Citrus Sinensis ID: 013696

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
Protein Sequence
MAKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNLRDESKTEGQRDGSGANATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ
Secondary Structure (PSIPRED)
ccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcccccccccccccccccccccccccHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHcccccccccccHccccccccccccccccHHHHHccccccccccccccccccccccHHHcHccccccHHHHcccccccccHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHEHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MAKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMkhkasskdnlvssslksakkpspsgnsysrnydpvshissslmneestpdatsekelgnecfkqKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYgksgmkvngheVRAVRNTIQKTGVAEIQDLTiskktenknlrdesktegqrdgsganathisgldkrnhrtkKAVLDASVQELATRATSRAVAEAaknitppksayefevswrgfagdHALQARLLKaispnalpQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWdetfcnestpiEYAEILDNLRSKYCLSQ
Flexible Loop (DISEMBL)
MAKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMkhkasskdnlvssslksakkpspsgnsysrnyDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGklkesiedsefalrlepqnqEIKKQLAEVKSLYEKEVFQKASKTLekygksgmkvnghevravrntiqktgvaeiqdltiskktenknlrdesktegqrdgsganathisgldkrnhrTKKAVLDASVQELATRATSRAvaeaaknitppksAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ
Low Complexity Region (SEG)
MAKHNRDQALDFQGFLNDLQDWDLSLNEkdkkmkhkasskdNLVssslksakkpspsGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNLRDESKTEGQRDGSGANATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ
Disordered region (IsUnstruct)
***********FQGFLNDLQDWD**********************************************************************CFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS*********************************************************************VRAVRNTIQKTGVA******************************************************************************SAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYC***
Disordered Region (DISOPRED)
*****RDQALDFQGFLNDLQDWD*****************************************************************ELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI*********************************************************************************************************************************SAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNEST**EYAEILDNLRSKYCLS*
Disordered Region (DISEMBL)
MAKHNRDQALDFQGFLNDLQDWDLSLNEK*******************************YSRNYDPVSHIS*****************LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENK*****************NATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ
Disordered Region (DISPRO)
MAKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKH*******************************************ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQ**************************************************************************************************RAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCL**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNLRDESKTEGQRDGSGANATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	438	2.2.26 [Sep-21-2011]
Q9D706	660	RNA polymerase II-associa	yes	no	0.682	0.453	0.307	6e-32
Q5ZKQ3	665	RNA polymerase II-associa	yes	no	0.696	0.458	0.286	6e-31
Q68FQ7	659	RNA polymerase II-associa	yes	no	0.742	0.493	0.310	9e-31
Q28IV3	657	RNA polymerase II-associa	yes	no	0.723	0.482	0.287	5e-30
Q9H6T3	665	RNA polymerase II-associa	no	no	0.737	0.485	0.298	8e-30
Q6NU95	660	RNA polymerase II-associa	N/A	no	0.703	0.466	0.277	9e-28
Q9LVH5	589	Outer envelope protein 64	no	no	0.223	0.166	0.525	2e-20
Q9MUK5	593	Translocon at the outer m	N/A	no	0.255	0.188	0.424	3e-19
Q80ZX8	901	Sperm-associated antigen	no	no	0.130	0.063	0.427	3e-18
Q07617	926	Sperm-associated antigen	no	no	0.310	0.146	0.395	2e-17

>sp|Q9D706|RPAP3_MOUSE RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1

 Score =  139 bits (349), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 179/361 (49%), Gaps = 62/361 (17%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A +EK+LGN  FK+ K+++AI+CY+R IA   T A+  ANRAMAYLK++R++EAE DCT+
Sbjct: 284 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQ 343

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV-KSLYEK- 200
           A+ LD  Y KA++RR TAR  LGK+ E+ +D E  L LEP N++   +L+ + K L EK 
Sbjct: 344 AIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKKELIEKG 403

Query: 201 ---EVFQKASKTLEKYGKSGMKVNGHEVRAVRN-------TIQKTGVAEIQDLTISKKTE 250
              +VF  +++              H V+AV N        ++K  + E  +L      E
Sbjct: 404 HWDDVFLDSTQ------------RHHVVKAVDNPPRGSPKALKKVFIEETGNL-----IE 446

Query: 251 NKNLRDESKTEGQRD------GSGANATHISGL-----DKRNHRTKK--AVLDASV---- 293
             +  D S T  + D      G+G       G+     D+   +  K  AV D S     
Sbjct: 447 TVDAPDSSATVPESDRATAAVGTGTKKNPSEGVSLPAGDRPRAKVLKIEAVSDTSAPQAQ 506

Query: 294 ------------QELATRATSRAVAEAAKNITP-PKSAYEFEVSWRGFAGDHALQARLLK 340
                       ++ + RA       AA  + P P ++++ E  +R       +  + +K
Sbjct: 507 VGVKQDARQPGSEKASVRAEQMPGQLAAAGLPPVPANSFQLESDFRQLRSSPEMLYQYVK 566

Query: 341 AISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKY--LEYLTMVPRFDLVIMCL 398
            I P+  P++F+  L   +   I+K++  F+      A+ +  LE L+ + RFD+ +M +
Sbjct: 567 NIEPSLYPKLFQKNLDPDVFNQIIKILHDFYIEREKPALIFEVLERLSQLRRFDMAVMFM 626

Query: 399 S 399
           S
Sbjct: 627 S 627

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.
Mus musculus (taxid: 10090)

>sp|Q5ZKQ3|RPAP3_CHICK RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1

 Score =  135 bits (340), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 182/367 (49%), Gaps = 62/367 (16%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A +EK+LGN  FK+ K++ AI+CY+R IA   T A+  ANRAMAYLK+++++EAE+DCT+
Sbjct: 283 AVTEKDLGNGYFKEGKYEAAIECYTRGIAADGTNALLPANRAMAYLKIQKYEEAENDCTQ 342

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 202
           AL LD  Y KA++RR  AR  LGKLKE+++D E  L+LEP N++   +L ++++    E+
Sbjct: 343 ALLLDASYSKAFARRGAARVALGKLKEAMQDFEAVLKLEPGNKQAINELTKIRN----EL 398

Query: 203 FQKASKTLEKYGKSGMKVN--------GHEVRAVRNT--IQKTGVAEIQDLTIS------ 246
            +K     E+Y    +K +         H    +++T  +++  V E+ D  ++      
Sbjct: 399 AEKEQSCHEEYPAVLIKESEIKNIVKLTHNPLNLKSTKPLRRIAVEEVDDDVLNSDFSSS 458

Query: 247 -------------KKTEN---------------KNLRDESKTEGQRDGSGANATHISGLD 278
                        + TEN               K L+ E  T+       A A  +S   
Sbjct: 459 TSLVNNWKNSVNIETTENLDQDDQLTSMDIPKAKQLKIEEITDVSSPQLPAGAKGVS--- 515

Query: 279 KRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARL 338
                   +VL  S+ +   R    +   A+     P ++++ E  +R            
Sbjct: 516 --------SVLHPSMNKQIERENKASFRSASPVPAIPANSFQLESDFRKLKDCPEKMYLY 567

Query: 339 LKAISPNALPQIFKNALSASILIDIVKVVATFFT--GEVDLAIKYLEYLTMVPRFDLVIM 396
           LK I P+  P++F+ +L   +   I++++  F+    E  L ++ L+ L+ + RFD+ +M
Sbjct: 568 LKQIEPSIYPKLFQKSLDPDLFNQILRILHDFYIEKEEPSLILEILQRLSELKRFDMAVM 627

Query: 397 CLSLADK 403
            +S ++K
Sbjct: 628 FMSGSEK 634

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Gallus gallus (taxid: 9031)

>sp|Q68FQ7|RPAP3_RAT RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1

 Score =  135 bits (339), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 184/354 (51%), Gaps = 29/354 (8%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A +EK+LGN  FK+ K+++AI+CY+R IA   T A+  ANRAMAYLK+++++EAE DCT+
Sbjct: 282 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQ 341

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV-KSLYEK- 200
           A+ LD  Y KA++RR TAR  LGK+ E+ +D E  L LEP N++   +L+ + K L EK 
Sbjct: 342 AILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIKKELIEKG 401

Query: 201 ---EVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTG-VAEIQDLTISKKTENKNLRD 256
              +VF  +++             G      +  I++TG + E  D   S  T  ++ R 
Sbjct: 402 RWDDVFLDSTQRHNVVKPVDSPHRGSPKALKKVFIEETGNLIESVDAPESSATVPESDRA 461

Query: 257 ESKTEGQRDGSGANATHISGLDKRNHRTKK--AVLDAS-----------VQELATRATSR 303
               +  R    +    +S  +    +  K  AV D+S           V++  +  TS 
Sbjct: 462 AVAVDTGRKKDFSQGDSVSSGETPRAKVLKIEAVGDSSAPQAQVDVKQGVRQSVSEKTSV 521

Query: 304 AVAE-----AAKNITP-PKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSA 357
            VA+     AA  + P P ++++ E  +R       +  + +K I P+  P++F+  L  
Sbjct: 522 RVAQTPGQLAAVVLPPVPANSFQLESDFRQLRSSPEMLYQYVKKIEPSLYPKLFQKNLDP 581

Query: 358 SILIDIVKVVATFFTGEVDLAIKY--LEYLTMVPRFDLVIMCLSLADKADLRKV 409
            +   I+K++  F+      A+ +  LE L+ + RFD+ +M +S  ++ +L KV
Sbjct: 582 DVFNQIIKILHDFYVEREKPALIFEVLERLSQLRRFDMAVMFMSGTER-ELTKV 634

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Rattus norvegicus (taxid: 10116)

>sp|Q28IV3|RPAP3_XENTR RNA polymerase II-associated protein 3 OS=Xenopus tropicalis GN=rpap3 PE=2 SV=1

 Score =  132 bits (332), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 179/348 (51%), Gaps = 31/348 (8%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A  +K+LGN  FK+ K++ AIDCYS+ +    T A+  ANRAMAYLK+++++EAE DCT 
Sbjct: 284 AIMQKDLGNAYFKEGKYEIAIDCYSQGMEADTTNALLPANRAMAYLKIQKYKEAETDCTL 343

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ----EIKKQLAEVKS-- 196
           A++LD  Y KA++RR TAR  LGK KE+ ED E  L+L+P N+    E++K   E++S  
Sbjct: 344 AISLDASYCKAFARRGTARIMLGKQKEAKEDFEMVLKLDPGNKQAVLELEKISRELRSNE 403

Query: 197 -------------LYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDL 243
                          EK   Q+++K L +     ++  G  V +  +++ ++   +   +
Sbjct: 404 KDTKGNKERKLINAVEKLPHQRSTKPLRRM---VIEEVGGPVESCISSLNESNHGKADSM 460

Query: 244 TISKKTENKNLRDESKTEGQRDGSGANATHISGL-DKRNHRTKKAVLDASVQELATRATS 302
            +  K + ++L +E       D   A    I  + D        +  + SV + +     
Sbjct: 461 DLITKADKQDLNEEQNFCSLPDVPSAKVPKIEEISDTYGSCEPSSGEEHSVSQPSPPKIE 520

Query: 303 RAVAEAAKNI-----TPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSA 357
           + V   ++++       P ++++ E  +R   G+  L  R LK I P+   ++F+ AL  
Sbjct: 521 KVVTTFSESLNIGIPVVPTNSFQLESDFRRLKGNPDLLYRYLKQIEPSFYGKLFQKALDP 580

Query: 358 SILIDIVKVVATFFTGE--VDLAIKYLEYLTMVPRFDLVIMCLSLADK 403
            +  +I+ ++   +  +   DL  + L+ L+ + RFD+ +M LS +D+
Sbjct: 581 DLFSEILTILREQYINKDSCDLIFEILQRLSELKRFDMAVMFLSGSDR 628

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Xenopus tropicalis (taxid: 8364)

>sp|Q9H6T3|RPAP3_HUMAN RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2

 Score =  131 bits (330), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 184/368 (50%), Gaps = 45/368 (12%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIAL-SPTAVAYANRAMAYLKLRRFQEAEDDCTE 142
           A SEK+ GN  FK+ K++ AI+CY+R IA     A+  ANRAMAYLK+++++EAE DCT+
Sbjct: 282 AISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQ 341

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV-KSLYEK- 200
           A+ LD  Y KA++RR TAR  LGKL E+ +D E  L LEP N++   +L+++ K L EK 
Sbjct: 342 AILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKKELIEKG 401

Query: 201 ---EVF------QKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTG----VAEIQDLTISK 247
              +VF      Q   K ++     G      +V      I++TG      ++ D T + 
Sbjct: 402 HWDDVFLDSTQRQNVVKPIDNPPHPGSTKPLKKV-----IIEETGNLIQTIDVPDSTTAA 456

Query: 248 KTENK-----NLRDESKTEGQRDGSGANATHISGLDKRNHRTKKAVLD-------ASVQE 295
             EN      N+   + T  +++ S  +    S   +      + V D       AS+++
Sbjct: 457 APENNPINLANVIAATGTTSKKNSSQDDLFPTSDTPRAKVLKIEEVSDTSSLQPQASLKQ 516

Query: 296 LATRATSRAV--------AEAAKNITPPKSA--YEFEVSWRGFAGDHALQARLLKAISPN 345
              ++ S  +        A+ A  + PP  A  ++ E  +R       +  + LK I P+
Sbjct: 517 DVCQSYSEKMPIEIEQKPAQFATTVLPPIPANSFQLESDFRQLKSSPDMLYQYLKQIEPS 576

Query: 346 ALPQIFKNALSASILIDIVKVVATFFTGEVD--LAIKYLEYLTMVPRFDLVIMCLSLADK 403
             P++F+  L   +   IVK++  F+  +    L  + L+ L+ + RFD+ +M +S  +K
Sbjct: 577 LYPKLFQKNLDPDVFNQIVKILHDFYIEKEKPLLIFEILQRLSELKRFDMAVMFMSETEK 636

Query: 404 ADLRKVWD 411
              R +++
Sbjct: 637 KIARALFN 644

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Homo sapiens (taxid: 9606)

>sp|Q6NU95|RPAP3_XENLA RNA polymerase II-associated protein 3 OS=Xenopus laevis GN=rpap3 PE=2 SV=1

 Score =  125 bits (313), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 176/360 (48%), Gaps = 52/360 (14%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSI-ALSPTAVAYANRAMAYLKLRRFQEAEDDCTE 142
           A  +K+LGN  FK+ K++ AI+CYS+ + A +  A+  ANRAMAYLK+++++EAE DCT 
Sbjct: 284 AIMQKDLGNAYFKEGKYEIAIECYSQGMEADNTNALLPANRAMAYLKIQKYKEAEADCTL 343

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 202
           A++LD  Y KA++RR TA   LGK KE+ ED E  L+L+P N++   +LA++        
Sbjct: 344 AISLDASYCKAFARRGTASIMLGKQKEAKEDFEMVLKLDPGNKQAVLELAKI-------- 395

Query: 203 FQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKT------------------GVAEIQDLT 244
             +  +++EK  ++G K +    R + NT++K                   G AEI + +
Sbjct: 396 -SQELRSIEK-DRNGNKDSNQ--RKLINTVEKLPHLRSTKPLRRMVIEEVGGPAEIFNTS 451

Query: 245 ISKKTENK----------NLRDESKTEGQRDGSGANATHISGLDKRNHRTKKAVLDASVQ 294
           + +    K          N +D ++ +   +     +  I  +++ +             
Sbjct: 452 LKETNHRKADSVDLTAETNTQDLNQEQNICNSPDVPSPKIPKIEEISDTPGSCEPTTGED 511

Query: 295 ELATRATSRAVAEAAKNITP---------PKSAYEFEVSWRGFAGDHALQARLLKAISPN 345
            L +R +   + +     +          P ++++ E  +R   G+  L    LK I P 
Sbjct: 512 YLTSRPSPPKIEKVVSTFSESLNIGIPAVPTNSFQLESDFRRLKGNPDLLYVYLKQIEPT 571

Query: 346 ALPQIFKNALSASILIDIVKVVATFFTGE--VDLAIKYLEYLTMVPRFDLVIMCLSLADK 403
              ++FK AL   +  DI+ ++   F  +   DL  + L+ L+ + RFD+ +M LS +DK
Sbjct: 572 LYGKLFKKALDPDLFSDILTILREQFINKDSPDLIFEILQRLSELKRFDMAVMFLSESDK 631

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Xenopus laevis (taxid: 8355)

>sp|Q9LVH5|OE64C_ARATH Outer envelope protein 64, chloroplastic OS=Arabidopsis thaliana GN=OEP64 PE=1 SV=1

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 70/99 (70%), Gaps = 1/99 (1%)

Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146
           KE GN+ FK+K +++AI  YS +I LS   A  Y+NRA AYL+L  F +AE+DCT+A+ L
Sbjct: 478 KEKGNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITL 537

Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185
           D + +KAY RR TAR+ LG  K +IED  +AL LEP N+
Sbjct: 538 DKKNVKAYLRRGTAREMLGDCKGAIEDFRYALVLEPNNK 576

Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane. Not essential for an efficient import of pre-proteins into plastids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MUK5|TOC64_PEA Translocon at the outer membrane of chloroplasts 64 OS=Pisum sativum GN=TOC64 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 75/113 (66%), Gaps = 1/113 (0%)

Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146
           KE GN+ +K K++++AI  Y+ +I L    A  Y+NRA AYL+L  + +AE+DCT A++ 
Sbjct: 481 KEKGNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEEDCTTAISF 540

Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 199
           D + +KAY RR TAR+ LG  KE+I+D ++AL LEP N+        ++ L++
Sbjct: 541 DKKNVKAYFRRGTAREMLGYYKEAIDDFKYALVLEPTNKRAASSAERLRKLFQ 593

Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane.

Pisum sativum (taxid: 3888)

>sp|Q80ZX8|SPAG1_MOUSE Sperm-associated antigen 1 OS=Mus musculus GN=Spag1 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 78/124 (62%)

Query: 72  SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR 131
           ++ L  +E +  A  EK  GNE F    ++EA+  Y+RS++  PTA+AY NRA A +KL+
Sbjct: 201 TAGLTEKEKSFLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQ 260

Query: 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191
           R+  A +DC +AL LD   +KA  RRAT  K   KL+E+++D    L++EP N   KK L
Sbjct: 261 RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTL 320

Query: 192 AEVK 195
           +EV+
Sbjct: 321 SEVE 324

Plays a role in fertilization. Binds GTP and has GTPase activity.

Mus musculus (taxid: 10090)

>sp|Q07617|SPAG1_HUMAN Sperm-associated antigen 1 OS=Homo sapiens GN=SPAG1 PE=1 SV=3

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 82/149 (55%), Gaps = 13/149 (8%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 143
           AT EKE GNE F    ++EA+  Y+RSI+  PT VAY NRA A +KL+ +  A  DC + 
Sbjct: 209 ATREKEKGNEAFNSGDYEEAVMYYTRSISALPTVVAYNNRAQAEIKLQNWNSAFQDCEKV 268

Query: 144 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV--------- 194
           L L+   +KA  RRAT  K   KL+E+ ED    L +EP N   KK L+EV         
Sbjct: 269 LELEPGNVKALLRRATTYKHQNKLREATEDLSKVLDVEPDNDLAKKTLSEVERDLKNSEA 328

Query: 195 ----KSLYEKEVFQKASKTLEKYGKSGMK 219
               ++  ++ V Q+   + ++ GKSG K
Sbjct: 329 ASETQTKGKRMVIQEIENSEDEEGKSGRK 357

Plays a role in fertilization. Binds GTP and has GTPase activity.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
359487668	474	PREDICTED: RNA polymerase II-associated	0.988	0.913	0.620	1e-155
296089779	1097	unnamed protein product [Vitis vinifera]	0.988	0.394	0.620	1e-155
356575341	455	PREDICTED: RNA polymerase II-associated	0.977	0.940	0.572	1e-142
363808038	454	uncharacterized protein LOC100784528 [Gl	0.968	0.933	0.572	1e-141
224123972	434	predicted protein [Populus trichocarpa]	0.913	0.921	0.610	1e-138
224122920	471	predicted protein [Populus trichocarpa]	0.968	0.900	0.588	1e-136
356517104	474	PREDICTED: LOW QUALITY PROTEIN: RNA poly	0.865	0.799	0.592	1e-133
449454004	458	PREDICTED: RNA polymerase II-associated	0.965	0.923	0.561	1e-132
42562786	476	tetratricopeptide repeat domain-containi	0.981	0.903	0.502	1e-124
297853532	472	hypothetical protein ARALYDRAFT_474807 [	0.961	0.891	0.513	1e-124

>gi|359487668|ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated protein 3-like [Vitis vinifera]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 293/472 (62%), Positives = 342/472 (72%), Gaps = 39/472 (8%)

Query: 2   AKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKD-----NLVSSSLKSAKKPSP 56
           +KH RDQALDFQGFL DLQDW+LSL EKDKKMK +A  KD       V  S K +  P  
Sbjct: 7   SKHARDQALDFQGFLTDLQDWELSLKEKDKKMKAQAEEKDVPTARGNVKHSSKLSSSPGV 66

Query: 57  S---GNS--------YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAID 105
           S   G S        YSRN+D +S ISSS M EES PDA SEKELGNE FKQ+KFKEAID
Sbjct: 67  SLRLGQSRSDTRQHEYSRNHDAISRISSSFMTEESLPDAASEKELGNEYFKQRKFKEAID 126

Query: 106 CYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165
           CYSRSIAL PTAVAYANRAMAY+K++RF+EAEDDC EALNLDDRYIKAYSRRATARKELG
Sbjct: 127 CYSRSIALLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELG 186

Query: 166 KLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS-------KTLEKYGKSGM 218
           K KE+ ED+EFALRLEPQNQEIKKQ AE KSLYEKE+ QKAS       + L+K GKS +
Sbjct: 187 KFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASGALKSSVQGLQKVGKSVV 246

Query: 219 KVNG--HEVRAVRNTIQKTGVAEIQDL--------TISKKTENKNLRDESKTEGQRDGSG 268
           +VN     VR++ ++ Q  G A IQD         T  ++TENK   + SK  G  +   
Sbjct: 247 EVNADTQGVRSISSSSQGAGEAAIQDRFMVPANTSTSMEETENKGTGNRSKENGYLE--- 303

Query: 269 ANATHISGLDK--RNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWR 326
            NA   SGL+    NH+T +  + +S+QELA+RA SRA+ EAAKNIT P SAY+FEVSWR
Sbjct: 304 -NAVQNSGLEDVMSNHKTGQREMKSSLQELASRAASRAMVEAAKNITAPNSAYQFEVSWR 362

Query: 327 GFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLT 386
           G  GDHALQA  LKAISPNALPQIFKNALSA ILIDI+K +ATFF  E+DLA+K+L+ LT
Sbjct: 363 GLLGDHALQASYLKAISPNALPQIFKNALSAPILIDIIKCIATFFVTEMDLAVKFLDNLT 422

Query: 387 MVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ 438
            + RFD++IMCLS  DK DL K+WDE FCN++TP  YA+ L  LR +YC  Q
Sbjct: 423 KISRFDMIIMCLSSTDKTDLLKIWDEVFCNKATPSGYADTLGKLRPRYCFKQ 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089779|emb|CBI39598.3| unnamed protein product [Vitis vinifera]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 293/472 (62%), Positives = 342/472 (72%), Gaps = 39/472 (8%)

Query: 2    AKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKD-----NLVSSSLKSAKKPSP 56
            +KH RDQALDFQGFL DLQDW+LSL EKDKKMK +A  KD       V  S K +  P  
Sbjct: 630  SKHARDQALDFQGFLTDLQDWELSLKEKDKKMKAQAEEKDVPTARGNVKHSSKLSSSPGV 689

Query: 57   S---GNS--------YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAID 105
            S   G S        YSRN+D +S ISSS M EES PDA SEKELGNE FKQ+KFKEAID
Sbjct: 690  SLRLGQSRSDTRQHEYSRNHDAISRISSSFMTEESLPDAASEKELGNEYFKQRKFKEAID 749

Query: 106  CYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165
            CYSRSIAL PTAVAYANRAMAY+K++RF+EAEDDC EALNLDDRYIKAYSRRATARKELG
Sbjct: 750  CYSRSIALLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELG 809

Query: 166  KLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS-------KTLEKYGKSGM 218
            K KE+ ED+EFALRLEPQNQEIKKQ AE KSLYEKE+ QKAS       + L+K GKS +
Sbjct: 810  KFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASGALKSSVQGLQKVGKSVV 869

Query: 219  KVNG--HEVRAVRNTIQKTGVAEIQDL--------TISKKTENKNLRDESKTEGQRDGSG 268
            +VN     VR++ ++ Q  G A IQD         T  ++TENK   + SK  G  +   
Sbjct: 870  EVNADTQGVRSISSSSQGAGEAAIQDRFMVPANTSTSMEETENKGTGNRSKENGYLE--- 926

Query: 269  ANATHISGLDK--RNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWR 326
             NA   SGL+    NH+T +  + +S+QELA+RA SRA+ EAAKNIT P SAY+FEVSWR
Sbjct: 927  -NAVQNSGLEDVMSNHKTGQREMKSSLQELASRAASRAMVEAAKNITAPNSAYQFEVSWR 985

Query: 327  GFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLT 386
            G  GDHALQA  LKAISPNALPQIFKNALSA ILIDI+K +ATFF  E+DLA+K+L+ LT
Sbjct: 986  GLLGDHALQASYLKAISPNALPQIFKNALSAPILIDIIKCIATFFVTEMDLAVKFLDNLT 1045

Query: 387  MVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ 438
             + RFD++IMCLS  DK DL K+WDE FCN++TP  YA+ L  LR +YC  Q
Sbjct: 1046 KISRFDMIIMCLSSTDKTDLLKIWDEVFCNKATPSGYADTLGKLRPRYCFKQ 1097

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575341|ref|XP_003555800.1| PREDICTED: RNA polymerase II-associated protein 3-like [Glycine max]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 261/456 (57%), Positives = 333/456 (73%), Gaps = 28/456 (6%)

Query: 10  LDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRN----Y 65
           +DF GFLNDLQDW+ S  +K +  K  ASS     S  ++ A K        +RN    Y
Sbjct: 1   MDFHGFLNDLQDWEFSRKDKARPQKENASSSRITGSVGVEKASKGDTISFDNARNSPGQY 60

Query: 66  D--PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANR 123
           D   ++H+ SS + E+  PDA SEK+LGNE FKQKKFKEA DCYSRSIALSPTAVAYANR
Sbjct: 61  DLSRINHLHSSFVPED-VPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANR 119

Query: 124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183
           AMA +KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK+KES++D+EFALRLEP 
Sbjct: 120 AMANIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMDDAEFALRLEPN 179

Query: 184 NQEIKKQLAEVKSLYEKEVFQKASKTL-------EKYGKSGMKVNGHEVRAVRNTIQKTG 236
           NQEIKKQ A+ KS YEK++ QKAS  L       +K GKS  KVNG  +  +  + QK+G
Sbjct: 180 NQEIKKQYADAKSFYEKDILQKASGVLRSTVQGTQKVGKSEEKVNGDSIHPISRSTQKSG 239

Query: 237 VAEI-------------QDLTISKKTENKNLRDESKTEGQRD-GSGANATHISGLDKRNH 282
           +AE+             ++  +++  + + ++  S  + Q D GS    +  + L++RNH
Sbjct: 240 LAEVHHHKKDNKRQILVKESLLTEDVDGREIKARSWPQSQGDDGSKGGLSASNSLEQRNH 299

Query: 283 RTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLLKAI 342
           R  K  + ASVQ+LA+RA SRA++EAAKN+TPP +AY+FEVSWR F+GD ALQARLLKAI
Sbjct: 300 RITKPEMKASVQQLASRAASRAMSEAAKNVTPPTTAYQFEVSWRAFSGDLALQARLLKAI 359

Query: 343 SPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLAD 402
           SP+ LP+IFKNALS++ILI+I+K +A+ FT ++DL + YLE+LT VPRFD+++MCLS  +
Sbjct: 360 SPHELPKIFKNALSSTILIEIIKCLASLFTEDMDLVVSYLEHLTKVPRFDVIVMCLSSTN 419

Query: 403 KADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ 438
           K D+RK+WDE F  E+TPIEYAEILDNL+SK+ L Q
Sbjct: 420 KDDIRKIWDEVFSGEATPIEYAEILDNLQSKFGLGQ 455

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808038|ref|NP_001242466.1| uncharacterized protein LOC100784528 [Glycine max] gi|255641877|gb|ACU21207.1| unknown [Glycine max]

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 263/459 (57%), Positives = 335/459 (72%), Gaps = 35/459 (7%)

Query: 10  LDFQGFLNDLQDWDLSLNEKDKKMKH---------KASSKDNLVSSSLKSAKKPSPSGNS 60
           +DFQGFLNDLQDW+LS  +K +  K          KAS  D +   S   A+  SP    
Sbjct: 1   MDFQGFLNDLQDWELSRKDKTRAQKENLTGSVGVEKASKGDTI---SFDRARN-SPGQYD 56

Query: 61  YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAY 120
            SR  DP + + SS + E+  PDA SEK+LGNE FKQKKFKEA DCYSRSIALSPTAVAY
Sbjct: 57  LSRINDPFNRVHSSFVPED-VPDAVSEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAY 115

Query: 121 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180
           ANRAMA +KLRRFQEAEDDCTEALNLDDRYIKAYSR ATARKELGK+KES++D+ FALRL
Sbjct: 116 ANRAMANIKLRRFQEAEDDCTEALNLDDRYIKAYSRGATARKELGKIKESMDDAAFALRL 175

Query: 181 EPQNQEIKKQLAEVKSLYEKEVFQKASKTL-------EKYGKSGMKVNGHEVRAVRNTIQ 233
           EP NQEIKKQ A+ KSLYEK++ QKAS  L       +K  KS  K+NG  ++ + ++ Q
Sbjct: 176 EPNNQEIKKQYADAKSLYEKDILQKASGALRSTVQGTQKSQKSEEKINGDSIQPISHSTQ 235

Query: 234 KTGVAEI-------------QDLTISKKTENKNLRDESKTEGQR-DGSGANATHISGLDK 279
           K+G+AE+             ++  +++  +++  +  S+ + Q  DGS    +  + L++
Sbjct: 236 KSGLAEVNHHKKDNEQQILVKESLLTEDVDSRETKARSRPQSQGGDGSKEGLSASNSLEQ 295

Query: 280 RNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLL 339
           RNH   K  + ASVQ+LA+RA SR VAEAAKN+TPP +AY+FEVSWR F+GD ALQARLL
Sbjct: 296 RNHSITKLEMKASVQQLASRAASRVVAEAAKNVTPPTTAYQFEVSWRAFSGDLALQARLL 355

Query: 340 KAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLS 399
           KAISP+ LP+IFKNALS++ILI+I+K +A+FFT ++DL + YLE+LT VPRFD+++MCLS
Sbjct: 356 KAISPHELPKIFKNALSSAILIEIIKCLASFFTEDMDLVVSYLEHLTKVPRFDVIVMCLS 415

Query: 400 LADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ 438
             +K D+RK+WDE F +E+TPIEYAEILDNLRSK+ L Q
Sbjct: 416 STNKDDIRKIWDEVFSSEATPIEYAEILDNLRSKFGLGQ 454

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123972|ref|XP_002330255.1| predicted protein [Populus trichocarpa] gi|222871711|gb|EEF08842.1| predicted protein [Populus trichocarpa]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 281/460 (61%), Positives = 328/460 (71%), Gaps = 60/460 (13%)

Query: 2   AKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNS- 60
            KH RDQALDFQGFLNDLQDW+L L + DKKMK K+ + D  +    +S  K S + +S 
Sbjct: 6   GKHGRDQALDFQGFLNDLQDWEL-LKDTDKKMKKKSRASDVKIGEDGRSKGKTSAADSSR 64

Query: 61  -------YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL 113
                  YSRN+  ++ +SSS   +E T DAT+EKELGNE FKQKKF EAI+CYSRSIAL
Sbjct: 65  SGSGQYEYSRNFGAINRLSSSFTTDEITVDATTEKELGNEYFKQKKFNEAIECYSRSIAL 124

Query: 114 SPTAVAYANRAMAYLKLRR----FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE 169
           SPTAVAYANRAMAYLK++R    F+EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE
Sbjct: 125 SPTAVAYANRAMAYLKIKRQFFLFREAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE 184

Query: 170 SIEDSEFALRLEPQNQEIKKQLAEVKSLYEK-------EVFQKASKTL-------EKYGK 215
           SIEDSEFAL+LEP NQEIKKQ AEVKSLYEK       E+ QKAS TL       ++ G+
Sbjct: 185 SIEDSEFALKLEPNNQEIKKQYAEVKSLYEKASDYLMLEILQKASGTLRSSLQGTQQGGR 244

Query: 216 SGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNLRDESKTEGQRDGSGANATHIS 275
           S   VNGH V  V    QKTGV+       + K +N                        
Sbjct: 245 SEASVNGHAVHPVSIATQKTGVS-------ASKKDNT----------------------- 274

Query: 276 GLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQ 335
              K+N+RT++  L  SV ELA++A SRA+AEAAKNITPP SAY+FEVSW+GF+GD ALQ
Sbjct: 275 ---KKNNRTRRQELKTSVIELASQAASRAMAEAAKNITPPNSAYQFEVSWQGFSGDRALQ 331

Query: 336 ARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVI 395
           A LLK  SP+ALPQIFKNALS  ILIDI+K VA+FF  ++D A+KYLE LT VPRFD++I
Sbjct: 332 AHLLKVTSPSALPQIFKNALSVPILIDIIKCVASFFIDDMDFAVKYLENLTKVPRFDMLI 391

Query: 396 MCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYC 435
           MCLS  D +DL K+WD  FC+ STPIEYAEILDNLRSKYC
Sbjct: 392 MCLSSTDTSDLLKMWDGVFCSASTPIEYAEILDNLRSKYC 431

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122920|ref|XP_002318949.1| predicted protein [Populus trichocarpa] gi|222857325|gb|EEE94872.1| predicted protein [Populus trichocarpa]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 279/474 (58%), Positives = 339/474 (71%), Gaps = 50/474 (10%)

Query: 2   AKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-S 60
            KH RDQALDFQGFLNDLQDW+L L + DKKMK K++ K + V  S       S SG   
Sbjct: 6   GKHGRDQALDFQGFLNDLQDWEL-LKDTDKKMKKKSTGKTSAVDFS-------SSSGMYD 57

Query: 61  YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAY 120
           ++RN+D ++ +S+S   +EST DAT+EKELGNE FKQKK+KEAI+CYSRSIALSPTAVAY
Sbjct: 58  HARNFDAINRLSNSFAIDESTVDATTEKELGNEYFKQKKYKEAIECYSRSIALSPTAVAY 117

Query: 121 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180
           ANRAMAYLK++R  +AEDDCTEALNLDDRYIKAYSRRAT RKELGKLKESIEDSEFAL+L
Sbjct: 118 ANRAMAYLKIKR--QAEDDCTEALNLDDRYIKAYSRRATTRKELGKLKESIEDSEFALKL 175

Query: 181 EPQNQEIKKQLAEVKSLYEKE------------------VFQKASKTL-------EKYGK 215
           EP NQEIKKQ AEVKSLYEK                      KAS++L       +K G+
Sbjct: 176 EPNNQEIKKQYAEVKSLYEKASDSTICCYSGCYISLLQFFVTKASESLRSSLQGAQKGGR 235

Query: 216 SGMKVNGHEVRAVRNTIQKTGVAEIQ---------DLTISKKTENKNLRDESKTEGQR-D 265
           S   VNGH V  V N  Q+TG +  Q         D  + K    + ++++S   G R D
Sbjct: 236 SEASVNGHAVHPVSNVTQRTGASASQKDKAKENDGDGVVKKSVYVEEIKNKSTGAGSRSD 295

Query: 266 GSGANATHISGLDKRN----HRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEF 321
           G   N +  + +   N      T +  L ASV+ELA++A SRA+AEAAKNITPP SAY+F
Sbjct: 296 GQLGNDSRANAIPSSNAESIQVTGRQELKASVKELASQAASRAMAEAAKNITPPNSAYQF 355

Query: 322 EVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKY 381
           EVSWRGF+GD ALQA LLK ++P+ALPQIFKNALS +ILIDI+K V++FF  ++DLA+KY
Sbjct: 356 EVSWRGFSGDRALQAHLLKVVTPSALPQIFKNALSVTILIDIIKCVSSFFIDDMDLAVKY 415

Query: 382 LEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYC 435
           LE LT VPRFD++IMCL   DKADL K+WDE FC+E+TPI+YAEILD +RS+YC
Sbjct: 416 LENLTEVPRFDILIMCLPSTDKADLLKMWDEVFCSEATPIKYAEILDKMRSRYC 469

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517104|ref|XP_003527230.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II-associated protein 3-like [Glycine max]

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/405 (59%), Positives = 309/405 (76%), Gaps = 26/405 (6%)

Query: 55  SPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS 114
           SP     SR    ++H+ SS + E+  PDA SEK+LGNE FKQKKFKEA DCYSRSIALS
Sbjct: 75  SPGQYDLSR----INHLHSSFVPED-VPDAASEKDLGNEFFKQKKFKEARDCYSRSIALS 129

Query: 115 PTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 174
           PTAVAYANRAMA +KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK+KES++D+
Sbjct: 130 PTAVAYANRAMANIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMDDA 189

Query: 175 EFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTL-------EKYGKSGMKVNGHEVRA 227
           EFALRLEP NQEIKKQ A+ KS YEK++ QKAS  L       +K GKS  KVNG  +  
Sbjct: 190 EFALRLEPNNQEIKKQYADAKSFYEKDILQKASGVLRSTVQGTQKVGKSEEKVNGDSIHP 249

Query: 228 VRNTIQKTGVAEI-------------QDLTISKKTENKNLRDESKTEGQRD-GSGANATH 273
           + ++ QK+G+AE+             ++  +++  +++ ++  S+ + Q D GS    + 
Sbjct: 250 ISHSTQKSGLAEVHHHKKDNERKILVKESLLTEDVDSREIKARSRPQSQGDDGSKGGLSA 309

Query: 274 ISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHA 333
            + L++RNHR  K  + ASV++LA+RA SRA++EAAKN+TPP +AY+FEVSWR F+GD A
Sbjct: 310 SNSLEQRNHRITKPEMKASVEQLASRAASRAMSEAAKNVTPPTTAYQFEVSWRAFSGDLA 369

Query: 334 LQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDL 393
           LQARLLKAISP+ LP+IFKNALS++ILI+I+K +A+ FT ++DL + YLE+LT VPRFD+
Sbjct: 370 LQARLLKAISPHXLPKIFKNALSSTILIEIIKCLASLFTEDMDLVVSYLEHLTKVPRFDV 429

Query: 394 VIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ 438
           ++MCLS  +K D+RK+WDE F  E+TPIEYAEILDNL+SK+ L Q
Sbjct: 430 IVMCLSSTNKDDIRKIWDEVFSGEATPIEYAEILDNLQSKFGLGQ 474

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454004|ref|XP_004144746.1| PREDICTED: RNA polymerase II-associated protein 3-like [Cucumis sativus] gi|449517788|ref|XP_004165926.1| PREDICTED: RNA polymerase II-associated protein 3-like [Cucumis sativus]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 262/467 (56%), Positives = 320/467 (68%), Gaps = 44/467 (9%)

Query: 2   AKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSY 61
           AKH RDQ LDFQGFLNDLQDW++S   KDKK+K +A  K+       + A     S   Y
Sbjct: 6   AKHGRDQLLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKEDRRQTEKA-----SAADY 60

Query: 62  SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYA 121
            + YD V+ +S +   E S  DA SEKE GNE FKQKKFKEAIDCYSRSIALSPTAVA+A
Sbjct: 61  MKQYDAVNRLSRNFQTEGSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 120

Query: 122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181
           NRAMAYLK+RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK KE++ED+EFA RLE
Sbjct: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180

Query: 182 PQNQEIKKQLAEVKSLYEKEVFQKAS----------KTLEKYGKSGMKVNGHEVRAVRNT 231
           P NQEIKKQ A++++   K + +KAS          KTL+K   S  K+   ++  V ++
Sbjct: 181 PNNQEIKKQHADLRAFVGKAILEKASGASRSSTKNKKTLKK-SDSDAKI--QDIPPVSSS 237

Query: 232 IQKTGVAEIQDLTISKKTENKNLRDESKT-----EGQRDGSGANAT-------------- 272
             +TG+     L   ++ E     +  KT     E +   SGA  T              
Sbjct: 238 TSRTGL-----LAARERVEENGGGNAVKTSARLEESEDTSSGAEITSKKVATNGFHKDSS 292

Query: 273 -HISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGD 331
            ++S L+ R+H  +K  L ASV ELA++A SR++ EAAKNI  P +AY+FEVSWRGF+GD
Sbjct: 293 SYLSALE-RDHLPRKQELKASVYELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSGD 351

Query: 332 HALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRF 391
            ALQARLLK ISP  LPQIFK+AL+A ILIDIVK VATFF  E  LAI +LE L  VPRF
Sbjct: 352 QALQARLLKTISPAKLPQIFKDALTAPILIDIVKCVATFFIEEPALAISFLENLVNVPRF 411

Query: 392 DLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ 438
            +++MCLS ++K DL K+WDE FC+E+ PIEYAE+LD+LRSKY L Q
Sbjct: 412 SILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ 458

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562786|ref|NP_176039.2| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|53828529|gb|AAU94374.1| At1g56440 [Arabidopsis thaliana] gi|59958350|gb|AAX12885.1| At1g56440 [Arabidopsis thaliana] gi|110743110|dbj|BAE99447.1| hypothetical protein [Arabidopsis thaliana] gi|332195274|gb|AEE33395.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/478 (50%), Positives = 330/478 (69%), Gaps = 48/478 (10%)

Query: 2   AKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-S 60
           +KH RDQ  DFQGF NDLQDW+LSL +KDKK+K + ++  N  S + +    PS SG   
Sbjct: 6   SKHGRDQTQDFQGFFNDLQDWELSLKDKDKKIKQQPANSSNPSSETFR----PSGSGKYD 61

Query: 61  YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAY 120
           +++ Y  +  +SSSL+ E S  D++SEKE GNE FKQKKF EAIDCYSRSIALSP AV Y
Sbjct: 62  FAKKYRSIRDLSSSLIGE-SLLDSSSEKEQGNEFFKQKKFNEAIDCYSRSIALSPNAVTY 120

Query: 121 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180
           ANRAMAYLK++R++EAE DCTEALNLDDRYIKAYSRRATARKELG +KE+ ED+EFALRL
Sbjct: 121 ANRAMAYLKIKRYREAEVDCTEALNLDDRYIKAYSRRATARKELGMIKEAKEDAEFALRL 180

Query: 181 EPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYGKSGMKVNGHE---------------- 224
           EP++QE+KKQ A++KSL EKE+ +KA+  ++   +  +K +G +                
Sbjct: 181 EPESQELKKQYADIKSLLEKEIIEKATGAMQSTAQELLKTSGLDKKIQKPKTEMTSKPVT 240

Query: 225 ---------VRAVRNTIQKTGVAEIQDLTISKKTENKNLRDESKTE-------------- 261
                    V+ V  + + +G   I+++   +K++  +++  + TE              
Sbjct: 241 LVAKTNRDIVQPVLGSNESSGKKLIENIQPEEKSKEGSMKIPAITEILDSKKVTPGSQSY 300

Query: 262 -GQRDGSGANATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYE 320
             +   S  N T  SG +  N  +K+  L  SVQELA  A S A+ EA+KNI  PKSAYE
Sbjct: 301 EKEAKPSDRNGTQPSGPE--NQVSKQLELKPSVQELAAHAASLAMTEASKNIKTPKSAYE 358

Query: 321 FEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIK 380
           FE SWR F+GD AL+++LLK  +P++LPQIFKNAL++ +L+DI+K VA+FFT ++DLA+K
Sbjct: 359 FENSWRSFSGDSALRSQLLKVTTPSSLPQIFKNALTSPVLVDIIKCVASFFTEDMDLAVK 418

Query: 381 YLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ 438
           Y+E LT VPRF++++MCL+  +K +L K+W++ FCN++TP+EYAE+LD LRS+YCL Q
Sbjct: 419 YIENLTKVPRFNMLVMCLTSTEKNELLKIWEDVFCNKATPMEYAEVLDKLRSRYCLKQ 476

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853532|ref|XP_002894647.1| hypothetical protein ARALYDRAFT_474807 [Arabidopsis lyrata subsp. lyrata] gi|297340489|gb|EFH70906.1| hypothetical protein ARALYDRAFT_474807 [Arabidopsis lyrata subsp. lyrata]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/481 (51%), Positives = 327/481 (67%), Gaps = 60/481 (12%)

Query: 3   KHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SY 61
           KH RDQ    QGFLNDLQDW+LSL +KDKK+K +  +  N  S + +    PS SG   +
Sbjct: 7   KHGRDQT---QGFLNDLQDWELSLKDKDKKIKQQRDNSPNPSSENFR----PSGSGQYDF 59

Query: 62  SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYA 121
            +NY  V  +SSSL+ E S  D+ SEKE GNE FKQKKF EAIDCYSRSIALSP A+AYA
Sbjct: 60  VKNYHSVRDLSSSLIGE-SLLDSNSEKEQGNEFFKQKKFNEAIDCYSRSIALSPNAIAYA 118

Query: 122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181
           NRAMAYLK++R++EA+ DCTEALNLDDRYIKAYSRRATARKELG +KE+ ED+EFALRLE
Sbjct: 119 NRAMAYLKIKRYREADVDCTEALNLDDRYIKAYSRRATARKELGMIKEAKEDAEFALRLE 178

Query: 182 PQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQ 241
           P++QE+KKQ A++KSL EKE+ +KA+  ++   +  +K +G + +     IQK     ++
Sbjct: 179 PESQELKKQYADIKSLLEKEIIEKATGAMQSTAQELLKTSGLDKK-----IQKPNTETLK 233

Query: 242 DLTISKKTEN------------------KNLRDESKT-EGQRD----------------- 265
            +T+  KT                    +N++ E K+ EG +                  
Sbjct: 234 PVTLGTKTNRDMGQPVPGSKESSGKKLIENIQPEGKSIEGSKKIPAIMENLDSKKVTPRV 293

Query: 266 --------GSGANATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKS 317
                    S  N T  SG  + N  +KK  L  SVQELA  A S A++EA+KNI  PKS
Sbjct: 294 QSYEKEVKSSDRNGTQPSG--QGNQVSKKLELKPSVQELAAHAASLAMSEASKNIKAPKS 351

Query: 318 AYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDL 377
           AYEFE SWR F+GD ALQ +LLK +SP+ LPQIFKNA+++ +L+DI+K VA+FFT ++DL
Sbjct: 352 AYEFENSWRSFSGDLALQTQLLKVMSPSTLPQIFKNAMTSPVLVDIIKCVASFFTEDMDL 411

Query: 378 AIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLS 437
           A+KY+E LT VPRF++++MCL+L +K +L K+W++ FCN++TP+EYAE+LD LRS+YCL 
Sbjct: 412 AVKYIENLTKVPRFNMLVMCLTLTEKNELLKLWEDVFCNKATPMEYAEVLDKLRSRYCLK 471

Query: 438 Q 438
           Q
Sbjct: 472 Q 472

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
MGI|MGI:1277218	660	Rpap3 "RNA polymerase II assoc	0.305	0.203	0.463	2.3e-26
RGD|1310702	893	Spag1 "sperm associated antige	0.321	0.157	0.402	3.5e-24
MGI|MGI:1349387	901	Spag1 "sperm associated antige	0.436	0.211	0.341	5.5e-24
ZFIN|ZDB-GENE-040426-928	273	rpap3 "RNA polymerase II assoc	0.248	0.399	0.427	2.5e-22
TAIR|locus:2088600	589	TOC64-III "translocon at the o	0.264	0.196	0.487	2e-19
UNIPROTKB|Q9MUK5	593	TOC64 "Translocon at the outer	0.294	0.217	0.393	4.5e-19
UNIPROTKB|Q07617	926	SPAG1 "Sperm-associated antige	0.490	0.232	0.341	6.1e-19
UNIPROTKB|F1P4X4	304	TOMM34 "Uncharacterized protei	0.253	0.365	0.441	2.6e-18
FB|FBgn0015544	534	spag "spaghetti" [Drosophila m	0.267	0.219	0.372	5.9e-18
ZFIN|ZDB-GENE-050327-75	481	zgc:110801 "zgc:110801" [Danio	0.301	0.274	0.345	1.2e-16

MGI|MGI:1277218 Rpap3 "RNA polymerase II associated protein 3" [Mus musculus (taxid:10090)]

 Score = 297 (109.6 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
 Identities = 63/136 (46%), Positives = 91/136 (66%)

Query:    67 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAM 125
             P +  S     ++    A +EK+LGN  FK+ K+++AI+CY+R IA   T A+  ANRAM
Sbjct:   267 PAAGESKPTGGQQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAM 326

Query:   126 AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185
             AYLK++R++EAE DCT+A+ LD  Y KA++RR TAR  LGK+ E+ +D E  L LEP N+
Sbjct:   327 AYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNK 386

Query:   186 EIKKQLAEVKS-LYEK 200
             +   +L+ +K  L EK
Sbjct:   387 QAATELSRIKKELIEK 402

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1310702 Spag1 "sperm associated antigen 1" [Rattus norvegicus (taxid:10116)]

 Score = 234 (87.4 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
 Identities = 58/144 (40%), Positives = 83/144 (57%)

Query:    72 SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR 131
             ++ L  +E    A  EK  GNE F    ++EA+  Y+RS++  PTA AY NRA A +KL+
Sbjct:   201 TAGLTEKEKNFLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTATAYNNRAQAEIKLQ 260

Query:   132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191
             R+  A +DC +AL L+   IKA  RRAT  K   K  E+++D    L+ EP N   KK L
Sbjct:   261 RWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTL 320

Query:   192 AEVKSLYEKEVFQKASKTLEKYGK 215
             +EV+   E +  + AS+ L+  GK
Sbjct:   321 SEVER--ELKNSEPASE-LQTKGK 341

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

MGI|MGI:1349387 Spag1 "sperm associated antigen 1" [Mus musculus (taxid:10090)]

 Score = 249 (92.7 bits), Expect = 5.5e-24, Sum P(2) = 5.5e-24
 Identities = 69/202 (34%), Positives = 104/202 (51%)

Query:    72 SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR 131
             ++ L  +E +  A  EK  GNE F    ++EA+  Y+RS++  PTA+AY NRA A +KL+
Sbjct:   201 TAGLTEKEKSFLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQ 260

Query:   132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191
             R+  A +DC +AL LD   +KA  RRAT  K   KL+E+++D    L++EP N   KK L
Sbjct:   261 RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTL 320

Query:   192 AEV-KSLYEKEV---FQKASKTL-----EKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQD 242
             +EV + L   E     Q   K +     E  G  G K +  E R    +  +  +  IQ 
Sbjct:   321 SEVERDLKNSEPVSELQTKGKRMVIEEVENSGDEGGKGSADE-REDGGS-DEAAMGNIQK 378

Query:   243 LTISKKTENKNLRDESKTEGQR 264
               + +++E        +T G R
Sbjct:   379 KLMVRRSEGGRRSRRGRTPGPR 400

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-928 rpap3 "RNA polymerase II associated protein 3" [Danio rerio (taxid:7955)]

 Score = 235 (87.8 bits), Expect = 2.5e-22, Sum P(2) = 2.5e-22
 Identities = 47/110 (42%), Positives = 69/110 (62%)

Query:    84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTE 142
             A +EKE GN+ FK  +F  A++CY+R++   P   V   NRA  + +L++F  AE DC  
Sbjct:   128 ALAEKEKGNQFFKDGQFDSAVECYTRAMDADPYNPVPPTNRATCFYRLKKFAVAESDCNL 187

Query:   143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 192
             A+ LD +Y+KAY RRA  R  L K  E++ED E  L+L+P N E +++ A
Sbjct:   188 AIALDSKYVKAYIRRAATRTALEKHPEALEDYEMVLKLDPGNSERERERA 237

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2088600 TOC64-III "translocon at the outer membrane of chloroplasts 64-III" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 2.0e-19, P = 2.0e-19
 Identities = 59/121 (48%), Positives = 79/121 (65%)

Query:    66 DPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA 124
             DP S    ++  EES   A   KE GN+ FK+K +++AI  YS +I LS   A  Y+NRA
Sbjct:   460 DPKSS-KKAITKEESAEIA---KEKGNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRA 515

Query:   125 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184
              AYL+L  F +AE+DCT+A+ LD + +KAY RR TAR+ LG  K +IED  +AL LEP N
Sbjct:   516 AAYLELGGFLQAEEDCTKAITLDKKNVKAYLRRGTAREMLGDCKGAIEDFRYALVLEPNN 575

Query:   185 Q 185
             +
Sbjct:   576 K 576

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0031359 "integral to chloroplast outer membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|Q9MUK5 TOC64 "Translocon at the outer membrane of chloroplasts 64" [Pisum sativum (taxid:3888)]

 Score = 254 (94.5 bits), Expect = 4.5e-19, P = 4.5e-19
 Identities = 52/132 (39%), Positives = 86/132 (65%)

Query:    69 SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-SPTAVAYANRAMAY 127
             S  S S++++E + + + EK  GN+ +K K++++AI  Y+ +I L    A  Y+NRA AY
Sbjct:   464 SKSSKSVVSKEQSAEISKEK--GNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAY 521

Query:   128 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187
             L+L  + +AE+DCT A++ D + +KAY RR TAR+ LG  KE+I+D ++AL LEP N+  
Sbjct:   522 LELGSYLQAEEDCTTAISFDKKNVKAYFRRGTAREMLGYYKEAIDDFKYALVLEPTNKRA 581

Query:   188 KKQLAEVKSLYE 199
                   ++ L++
Sbjct:   582 ASSAERLRKLFQ 593

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q07617 SPAG1 "Sperm-associated antigen 1" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 6.1e-19, P = 6.1e-19
 Identities = 81/237 (34%), Positives = 114/237 (48%)

Query:    72 SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR 131
             ++ L  +E    AT EKE GNE F    ++EA+  Y+RSI+  PT VAY NRA A +KL+
Sbjct:   197 TAGLTEKEKDFLATREKEKGNEAFNSGDYEEAVMYYTRSISALPTVVAYNNRAQAEIKLQ 256

Query:   132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191
              +  A  DC + L L+   +KA  RRAT  K   KL+E+ ED    L +EP N   KK L
Sbjct:   257 NWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLREATEDLSKVLDVEPDNDLAKKTL 316

Query:   192 AEV-KSLYEKE------------VFQKASKTLEKYGKSGMKVNGHEVRAV-RNTIQKTGV 237
             +EV + L   E            V Q+   + ++ GKSG K   HE     +   +  G 
Sbjct:   317 SEVERDLKNSEAASETQTKGKRMVIQEIENSEDEEGKSGRK---HEDGGGDKKPAEPAGA 373

Query:   238 AEIQDLTISKKTENKNLRDESKTEGQRDGSGA---NATHISGLDKRNHRTKKAVLDA 291
             A      +    + K L  +++  G+R   GA     T  +G DKR+ R   A   A
Sbjct:   374 ARAAQPCVMGNIQKK-LTGKAEG-GKRPARGAPQRGQTPEAGADKRSPRRASAAAAA 428

GO:0005525 "GTP binding" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1P4X4 TOMM34 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 226 (84.6 bits), Expect = 2.6e-18, P = 2.6e-18
 Identities = 49/111 (44%), Positives = 68/111 (61%)

Query:    84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 143
             A + KE GN+  K+   K+AI+ YS S+ L+     Y NRA+ YL L++ +EA  DCTEA
Sbjct:   191 AQTLKEEGNKLVKKGNHKKAIEKYSESLKLNQECATYTNRALCYLTLKQHKEAVQDCTEA 250

Query:   144 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194
             L LD + +KA+ RRA A KEL   K SI D    L++EP+N    + L E+
Sbjct:   251 LRLDPKNVKAFYRRAQALKELKDYKSSIADINSLLKIEPKNTAALRLLQEL 301

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

FB|FBgn0015544 spag "spaghetti" [Drosophila melanogaster (taxid:7227)]

 Score = 201 (75.8 bits), Expect = 5.9e-18, Sum P(2) = 5.9e-18
 Identities = 44/118 (37%), Positives = 66/118 (55%)

Query:    84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTE 142
             A   K+ GN   KQ ++++AI  YS +IA+ P   + + NRA+ YLK   F +  +DC  
Sbjct:    96 ANDIKDRGNTYVKQGEYEKAIVAYSTAIAVYPHDPIYHINRALCYLKQESFDQCVEDCEA 155

Query:   143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200
             A+ LD   +KAY RR  A + LG   E+++D    L +EP+N E K+ LA +     K
Sbjct:   156 AIALDKLCVKAYYRRMQANESLGNNMEALKDCTTVLAIEPKNIEAKRSLARINDRLRK 213

GO:0008283 "cell proliferation" evidence=IMP

GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS

GO:0007446 "imaginal disc growth" evidence=IMP

GO:0051087 "chaperone binding" evidence=IPI

GO:0046529 "imaginal disc fusion, thorax closure" evidence=IMP

GO:0007444 "imaginal disc development" evidence=IMP

ZFIN|ZDB-GENE-050327-75 zgc:110801 "zgc:110801" [Danio rerio (taxid:7955)]

 Score = 231 (86.4 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 46/133 (34%), Positives = 78/133 (58%)

Query:    75 LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF 133
             +  EE    A   KE  N+ FK K ++ AI  Y+ ++ L+PT  + Y+NR+++YL+   +
Sbjct:     1 MAEEERNASAEKLKEKANDYFKDKDYENAIKYYTEALDLNPTNPIYYSNRSLSYLRTECY 60

Query:   134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193
               A  D T AL LD  Y+K Y RRAT+   LGK K +++D E  +R+ P +++ K +  E
Sbjct:    61 GYALADATRALELDKNYLKGYYRRATSNMALGKFKAALKDYETVVRVRPNDKDAKMKYQE 120

Query:   194 VKSLYEKEVFQKA 206
                + +++ F++A
Sbjct:   121 CNKIVKQKAFERA 133

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	438
pfam13877	94	pfam13877, RPAP3_C, Potential Monad-binding region	9e-28
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-20
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	3e-16
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-12
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-09
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	9e-09
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	5e-05
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	5e-05
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	9e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	3e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	7e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.001
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.002

>gnl|CDD|222431 pfam13877, RPAP3_C, Potential Monad-binding region of RPAP3

 Score =  105 bits (264), Expect = 9e-28
 Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 1/92 (1%)

Query: 313 TPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFF- 371
             PK+AYEFE +WR  +GD  L+ + LK I P++LP++F N+L   +L DI+K +     
Sbjct: 2   PAPKNAYEFERAWRRLSGDPDLRYQYLKNIPPDSLPKLFGNSLDPDLLGDILKALNEHLV 61

Query: 372 TGEVDLAIKYLEYLTMVPRFDLVIMCLSLADK 403
             + DL  + LE L+ V RFD+ +M LS ++K
Sbjct: 62  PKDPDLVAEILENLSKVKRFDMALMFLSKSEK 93

This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus. Length = 94

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 85.1 bits (211), Expect = 2e-20
 Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 1/97 (1%)

Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146
             LGN  +K   + EA++ Y +++ L P  A AY N A AY KL +++EA +D  +AL L
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183
           D    KAY     A  +LGK +E++E  E AL L+P 
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 80.4 bits (198), Expect = 3e-16
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 1/146 (0%)

Query: 29  KDKKMKHKASSKDNLVSSSLKSAKKPS-PSGNSYSRNYDPVSHISSSLMNEESTPDATSE 87
           K ++ K K + K+    +  K +  P            +      ++L  EE    A   
Sbjct: 71  KKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDESSVANLSEEERKKYAAKL 130

Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           KE GN+ ++ K F +AI  YS++I   P  V Y+NRA  +  L  +++  +D T AL LD
Sbjct: 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD 190

Query: 148 DRYIKAYSRRATARKELGKLKESIED 173
             Y KA +RRA A   LGK  +++ D
Sbjct: 191 PDYSKALNRRANAYDGLGKYADALLD 216

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 2/67 (2%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL-RRFQEAEDDC 140
           +A + K LGN  FK   + EAI+ Y +++ L P  A AY N A+AYLKL + ++EA +D 
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 141 TEALNLD 147
            +AL LD
Sbjct: 62  EKALELD 68

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK-LKESIEDSE 175
           A A  N   A  KL  + EA +   +AL LD    +AY   A A  +LGK  +E++ED E
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 176 FALRLEP 182
            AL L+P
Sbjct: 63  KALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 178
           A  N    Y KL  + EA +   +AL LD     AY   A A  +LGK +E++ED E AL
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 179 RLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
            L+P N +    L    + Y+   +++A +  EK
Sbjct: 62  ELDPDNAKAYYNLG--LAYYKLGKYEEALEAYEK 93

Length = 100

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 56.3 bits (136), Expect = 9e-09
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 1/114 (0%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           +   E F    F  A+D Y+++I L P  A  YA+RA A +KL  F EA  D  +A+ LD
Sbjct: 7   DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD 66

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 201
               KAY R+ TA  +L + + +    E    L P +    K + E      +E
Sbjct: 67  PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120

Length = 356

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 17/65 (26%), Positives = 28/65 (43%)

Query: 116 TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 175
            A A  N A+   +L  + EA +   +AL L     + +   A A   L +L  ++ D +
Sbjct: 4   LAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYD 63

Query: 176 FALRL 180
            AL  
Sbjct: 64  EALEY 68

Length = 78

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 150
           A A  N   AYLKL ++ EA +   +AL L+   
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 39.0 bits (92), Expect = 9e-05
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           A A  N   AYLKL  + EA +   +AL LD
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELD 31

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSP--------TAVAYANRAMAYLKLRRFQE 135
           A +   L     +   + EA++   +++ L+         TA A  N A  YL L  + E
Sbjct: 5   AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64

Query: 136 AEDDCTEALNLDDR 149
           A +   +AL L + 
Sbjct: 65  ALEYLEKALALREA 78

Length = 78

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 37.4 bits (88), Expect = 3e-04
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT 116
           LGN   K  K+ EA++ Y +++ L+P 
Sbjct: 7   LGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 41.0 bits (94), Expect = 7e-04
 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 7/123 (5%)

Query: 95  FKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-DR 149
           ++   ++EA++ Y +++ L P     A A          L R++EA +   +AL L+ D 
Sbjct: 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD 200

Query: 150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKT 209
             +A         +LGK +E++E  E AL L+P N E    LA +  L E   +++A + 
Sbjct: 201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALL--LLELGRYEEALEA 258

Query: 210 LEK 212
           LEK
Sbjct: 259 LEK 261

Length = 291

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSPT 116
             LGN   K   + EA++ Y +++ L P 
Sbjct: 5   YNLGNAYLKLGDYDEALEYYEKALELDPN 33

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 150
           A A  N  +AY KL  ++EA +   +AL LD   
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	438
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.97
PF13877	94	RPAP3_C: Potential Monad-binding region of RPAP3	99.94
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.8
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.8
KOG0553	304	consensus TPR repeat-containing protein [General f	99.79
PRK15359	144	type III secretion system chaperone protein SscB;	99.7
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.68
KOG1126	638	consensus DNA-binding cell division cycle control	99.68
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.66
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.63
KOG1126	638	consensus DNA-binding cell division cycle control	99.61
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.6
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.59
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.58
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.56
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.53
KOG4234	271	consensus TPR repeat-containing protein [General f	99.53
PRK11189	296	lipoprotein NlpI; Provisional	99.53
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.52
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.51
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.51
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.5
PRK11189	296	lipoprotein NlpI; Provisional	99.5
PRK12370	553	invasion protein regulator; Provisional	99.49
PRK12370	553	invasion protein regulator; Provisional	99.49
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.48
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.48
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.47
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.46
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.46
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.46
PRK15359	144	type III secretion system chaperone protein SscB;	99.46
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.46
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.41
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.39
PLN02789	320	farnesyltranstransferase	99.39
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.38
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.37
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.37
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.36
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.34
KOG0553	304	consensus TPR repeat-containing protein [General f	99.34
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.34
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.33
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.32
PLN02789	320	farnesyltranstransferase	99.32
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.3
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.3
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.29
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.29
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.28
KOG1125	579	consensus TPR repeat-containing protein [General f	99.27
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.26
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.26
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.26
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.23
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.22
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.21
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.21
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.21
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.21
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.21
KOG1125	579	consensus TPR repeat-containing protein [General f	99.2
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.2
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.19
KOG1129	478	consensus TPR repeat-containing protein [General f	99.18
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.17
KOG1129	478	consensus TPR repeat-containing protein [General f	99.17
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.14
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.14
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.13
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.09
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.08
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.07
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.07
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.06
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.06
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.06
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.05
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.05
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.04
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.03
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.03
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.03
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.01
PRK14574	822	hmsH outer membrane protein; Provisional	99.0
PRK15331	165	chaperone protein SicA; Provisional	99.0
KOG2076	895	consensus RNA polymerase III transcription factor	98.99
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.98
PRK10803	263	tol-pal system protein YbgF; Provisional	98.95
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.94
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.94
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.93
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.93
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.92
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.91
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.91
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.91
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.9
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.9
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.9
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.9
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.89
KOG2003	840	consensus TPR repeat-containing protein [General f	98.88
PRK14574	822	hmsH outer membrane protein; Provisional	98.85
PF12688	120	TPR_5: Tetratrico peptide repeat	98.85
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.84
PRK11906	458	transcriptional regulator; Provisional	98.83
KOG2076	895	consensus RNA polymerase III transcription factor	98.81
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.81
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.8
KOG2003	840	consensus TPR repeat-containing protein [General f	98.78
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.78
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.77
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.77
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.77
PF13512	142	TPR_18: Tetratricopeptide repeat	98.72
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.71
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.7
PF13371	73	TPR_9: Tetratricopeptide repeat	98.7
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.69
PF13371	73	TPR_9: Tetratricopeptide repeat	98.67
KOG4555	175	consensus TPR repeat-containing protein [Function	98.67
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.66
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.66
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.66
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.64
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.64
KOG4234	271	consensus TPR repeat-containing protein [General f	98.64
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.63
PRK10803	263	tol-pal system protein YbgF; Provisional	98.62
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.62
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.62
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.62
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.6
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.6
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.59
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.58
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.57
PRK15331	165	chaperone protein SicA; Provisional	98.54
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.54
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.54
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.53
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.52
PRK11906	458	transcriptional regulator; Provisional	98.52
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.5
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.49
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.48
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.47
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.46
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.46
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.45
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.44
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.44
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.4
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.38
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.37
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.37
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.35
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.35
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.31
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.28
PF13512	142	TPR_18: Tetratricopeptide repeat	98.25
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.25
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.25
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.24
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.23
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.21
KOG4555	175	consensus TPR repeat-containing protein [Function	98.2
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.18
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.12
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.08
PF12688	120	TPR_5: Tetratrico peptide repeat	98.07
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.04
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.97
PLN03218	1060	maturation of RBCL 1; Provisional	97.97
PF13431	34	TPR_17: Tetratricopeptide repeat	97.93
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.93
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.93
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.92
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.92
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.91
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.9
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.9
PLN03218	1060	maturation of RBCL 1; Provisional	97.88
PF13428	44	TPR_14: Tetratricopeptide repeat	97.88
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.86
KOG1310	758	consensus WD40 repeat protein [General function pr	97.85
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.82
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.81
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.78
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.78
PF13428	44	TPR_14: Tetratricopeptide repeat	97.78
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.75
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.69
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.67
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.63
PLN03077	857	Protein ECB2; Provisional	97.62
PLN03077	857	Protein ECB2; Provisional	97.61
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.6
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.59
PF13431	34	TPR_17: Tetratricopeptide repeat	97.59
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.55
PRK04841	903	transcriptional regulator MalT; Provisional	97.55
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.53
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.53
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.52
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.47
KOG1586	288	consensus Protein required for fusion of vesicles	97.4
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.35
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.26
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.25
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.23
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.21
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	97.16
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.15
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.13
KOG2471	696	consensus TPR repeat-containing protein [General f	97.12
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.1
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.09
PRK04841	903	transcriptional regulator MalT; Provisional	97.08
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.07
PRK10941	269	hypothetical protein; Provisional	97.06
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.04
KOG1586	288	consensus Protein required for fusion of vesicles	97.02
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.95
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.93
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.88
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.87
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.86
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.8
KOG2471	696	consensus TPR repeat-containing protein [General f	96.79
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.75
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.71
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.69
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.64
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.58
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.48
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.45
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.44
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.44
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.35
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.33
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.32
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.32
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.26
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.26
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.21
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.19
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.18
KOG3364	149	consensus Membrane protein involved in organellar	96.18
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.17
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.07
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.02
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.0
PRK10941	269	hypothetical protein; Provisional	95.95
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.94
KOG2047	835	consensus mRNA splicing factor [RNA processing and	95.87
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.84
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.81
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.67
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.66
KOG2047	835	consensus mRNA splicing factor [RNA processing and	95.64
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.59
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.57
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.49
KOG3364	149	consensus Membrane protein involved in organellar	95.45
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.39
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.37
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.31
COG2912	269	Uncharacterized conserved protein [Function unknow	95.23
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.22
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.9
KOG2300	629	consensus Uncharacterized conserved protein [Funct	94.81
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.49
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.33
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.21
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.17
KOG1585	308	consensus Protein required for fusion of vesicles	94.1
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.1
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.07
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.06
KOG1585	308	consensus Protein required for fusion of vesicles	94.0
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.0
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.9
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.78
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.72
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	93.56
COG5191	435	Uncharacterized conserved protein, contains HAT (H	93.46
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.33
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.23
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	93.16
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.12
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	93.12
KOG1310	758	consensus WD40 repeat protein [General function pr	92.94
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.58
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	92.48
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	92.43
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.41
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.22
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	91.93
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	91.59
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.55
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	91.5
COG3118	304	Thioredoxin domain-containing protein [Posttransla	91.47
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	91.32
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	91.23
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.94
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	90.75
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	90.58
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.31
COG2912	269	Uncharacterized conserved protein [Function unknow	90.26
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	90.19
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	89.79
KOG2300	629	consensus Uncharacterized conserved protein [Funct	89.63
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	89.5
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	89.48
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	89.02
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	88.89
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	88.89
KOG0529	421	consensus Protein geranylgeranyltransferase type I	87.16
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	87.03
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.82
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	86.78
KOG2041	1189	consensus WD40 repeat protein [General function pr	86.66
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	85.89
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	85.82
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	85.61
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	85.41
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	85.36
COG3629	280	DnrI DNA-binding transcriptional activator of the	85.25
KOG3616	1636	consensus Selective LIM binding factor [Transcript	85.06
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	84.74
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	83.99
KOG4814	872	consensus Uncharacterized conserved protein [Funct	83.93
KOG0529	421	consensus Protein geranylgeranyltransferase type I	83.91
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	83.31
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	83.24
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	82.87
KOG2581	493	consensus 26S proteasome regulatory complex, subun	82.63
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	82.53
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	82.21
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	82.03
COG3947	361	Response regulator containing CheY-like receiver a	81.92
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	81.55
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	81.34
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	81.2
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	80.9
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	80.25
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	80.22

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.97  E-value=7.2e-31  Score=246.21  Aligned_cols=407  Identities=26%  Similarity=0.397  Sum_probs=256.6

Q ss_pred             CchhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcCcCCCccchHHHHHhhhc--CC
Q 013696            1 MAKHNRDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLM--NE   78 (438)
Q Consensus         1 ~~~~~r~~~~~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~g~~~eAi~~~~~al~--~~   78 (438)
                      +|+|+|+|++++|+|++||++||..|+.++.+|++++....+...+-.. .++..    ..|++.+.-.-++.-+.  .-
T Consensus        10 lq~qvrqna~e~Q~F~~DL~~WE~diK~KDkel~~Q~~~Pan~~~P~r~-~FR~~----ksGK~~~ssKK~Rs~I~~~dL   84 (536)
T KOG4648|consen   10 LQRQVRQNAREYQNFVKDLYSWEQDIKNKDKELQKQPLSPANKDLPVRS-HFRTD----KSGKESPSSKKARSPIEKQDL   84 (536)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHhCCCCccccCCchhh-hcccC----CCCCcCcchhhhhcchhhccC
Confidence            4899999999999999999999999999999999997554444333211 22211    22333333333332222  00


Q ss_pred             CCCh-------hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc
Q 013696           79 ESTP-------DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY  150 (438)
Q Consensus        79 p~~~-------~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~  150 (438)
                      +-+.       .+.-++..|+.||++|+|++||.||.+++.++|. +..+.|+|++|+++++|..|+.+|..|+.+|..+
T Consensus        85 ~vd~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y  164 (536)
T KOG4648|consen   85 PVDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY  164 (536)
T ss_pred             CccHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence            1111       1112589999999999999999999999999996 9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhchhhhh----h---hh--ccC-----
Q 013696          151 IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTL----E---KY--GKS-----  216 (438)
Q Consensus       151 ~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ka~~~~~~~~~----~---~~--~~~-----  216 (438)
                      .+||.|+|.++..+|+..+|..+++.+|+|.|.+.+....+..+....++.|..+...-.    +   ..  .+.     
T Consensus       165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~F  244 (536)
T KOG4648|consen  165 VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKF  244 (536)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhh
Confidence            999999999999999999999999999999999999988888877777766655433110    0   00  000     


Q ss_pred             -Cccc-cCc---cccccccc---cccCCc-cccCcc---ch--hhhcccc-------------ccccc----c---ccC-
Q 013696          217 -GMKV-NGH---EVRAVRNT---IQKTGV-AEIQDL---TI--SKKTENK-------------NLRDE----S---KTE-  261 (438)
Q Consensus       217 -~~~~-~~~---~v~~v~~~---~~~~~~-~~~~~~---~~--~~~~~~~-------------~~~~~----~---~~~-  261 (438)
                       .... ..+   .++|+...   .+.+.. +.+...   ..  .+.+..+             ++.+.    +   ++. 
T Consensus       245 sk~~~~~~~i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~  324 (536)
T KOG4648|consen  245 SKKAMRSVPVVDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTK  324 (536)
T ss_pred             hhhhccccceeEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcch
Confidence             0000 000   01111100   000000 000000   00  0000000             00000    0   000 


Q ss_pred             ------CC-CCCCC-------CCccccc---------Cccc--c------cccccc------cccchhhHHHhhhhhhHH
Q 013696          262 ------GQ-RDGSG-------ANATHIS---------GLDK--R------NHRTKK------AVLDASVQELATRATSRA  304 (438)
Q Consensus       262 ------~~-~~~~~-------~~~~~~~---------~~~~--~------~~~~~~------~~~~~~~~~~~~~~~~~~  304 (438)
                            .+ ...++       .++++.+         ...+  .      .+++.+      ..+.....+++......+
T Consensus       325 ~T~~~~~P~~~~~~~~~sr~~~~ii~~~~~~~~~~~~~~~~~~V~~i~~~~~PP~~~i~~~~~~N~iQT~~i~~sss~~A  404 (536)
T KOG4648|consen  325 QTAVKVAPAVETPKETETRKDTKIVPESDNEAKPSAPKKTAVEVPKVQTQVSPPKTTIERSPEVNTVQTEKIEQASSNNA  404 (536)
T ss_pred             hheeeeccccccchhhhhhhccccccccccccccCCccccccccCCCCCCCCCCcceeEecCCcceeeeeeccccccccC
Confidence                  00 00000       0000000         0000  0      000000      000000011111111111


Q ss_pred             HHHhc---cCCCCCCCHHHHHHHHHhccCCHHHHHHHHhhcCCCchhHHhhhcCCHHHHHHHHHHHHhhcccc-HHHHHH
Q 013696          305 VAEAA---KNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGE-VDLAIK  380 (438)
Q Consensus       305 ~~~~~---~~~~~P~~~~ef~~~w~~~~~~~~~~~~yL~~i~p~~l~~lf~~~l~~~~l~~il~~l~~~~~~~-~~~~~~  380 (438)
                      |...+   -.+.+|+...+|-..|..+.+ |. +|+||+.++-.++.+|.......+.|.+.++..+.+++++ +.-...
T Consensus       405 ~~~~PI~~~~~~A~T~T~~~~~s~~~~~~-P~-r~~~LK~~EV~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~K~~~~A~  482 (536)
T KOG4648|consen  405 MSPSPIERFLPPAPTSTAQFHVTWKELSG-PQ-KYQYLKSIEVPNLCKILGAGFDSDTFADLLRTIHDFFVPNKEPNTAA  482 (536)
T ss_pred             CCCCchhhhCCCCCCccchhcccHhhhcc-ch-hhhheeeeeccchhhhcccccchHHHHHHHhhhccccccCCCCccce
Confidence            11111   235689999999999999977 33 9999999999999999999999999999999999999854 333455


Q ss_pred             HHHHhccCCchhHHHhhcChhhHHHHHHHHHHhh
Q 013696          381 YLEYLTMVPRFDLVIMCLSLADKADLRKVWDETF  414 (438)
Q Consensus       381 ~L~~l~~~~RF~~~~~~ls~~ek~~~~~l~~~l~  414 (438)
                      .|.-.++..-|.+..||++-.++..|.-++..+.
T Consensus       483 ~~L~~~~~~~F~i~s~~~~~~~~~~~~~~~~~~~  516 (536)
T KOG4648|consen  483 VLLEISKNDEFTILAMLMSAEEKKMVSSILNAIK  516 (536)
T ss_pred             eeeccCCCchhhHHHHHHhhhccccHHHHHHhhc
Confidence            6667889999999999999999999988777654

>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3

Probab=99.94  E-value=9.8e-27  Score=187.29  Aligned_cols=93  Identities=38%  Similarity=0.670  Sum_probs=89.4

Q ss_pred             CCCCCCHHHHHHHHHhccCCHHHHHHHHhhcCCCchhHHhhhcCCHHHHHHHHHHHHhhcc-ccHHHHHHHHHHhccCCc
Q 013696          312 ITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFT-GEVDLAIKYLEYLTMVPR  390 (438)
Q Consensus       312 ~~~P~~~~ef~~~w~~~~~~~~~~~~yL~~i~p~~l~~lf~~~l~~~~l~~il~~l~~~~~-~~~~~~~~~L~~l~~~~R  390 (438)
                      |++|+|++||+++||+++++++.+|+||+.|+|+.||+||+++|++++|++||.+|++++. .|+..|+++|++|++++|
T Consensus         1 p~~P~~~~eF~~~w~~~~~~~~~~~~yL~~i~p~~l~~if~~~l~~~~L~~il~~l~~~~~~~~~~~i~~~L~~L~~~~R   80 (94)
T PF13877_consen    1 PPAPKNSYEFERDWRRLKKDPEERYEYLKSIPPDSLPKIFKNSLEPEFLSEILEALNEHFIPEDPEFIFEILEALSKVKR   80 (94)
T ss_pred             CcCCCCHHHHHHHHHHHcCCHHHHHHHHHhCChHHHHHHHHccCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHhcCCCC
Confidence            4689999999999999999999999999999999999999999999999999999998887 688999999999999999


Q ss_pred             hhHHHhhcChhhHH
Q 013696          391 FDLVIMCLSLADKA  404 (438)
Q Consensus       391 F~~~~~~ls~~ek~  404 (438)
                      |+|++|||+++||+
T Consensus        81 F~l~~~fl~~~eK~   94 (94)
T PF13877_consen   81 FDLAVMFLSSSEKK   94 (94)
T ss_pred             HHHHHHhcCHhhCC
Confidence            99999999999985

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.80  E-value=1.6e-18  Score=173.81  Aligned_cols=185  Identities=18%  Similarity=0.227  Sum_probs=125.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHH
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE   89 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~   89 (438)
                      .|++.++++..+.+++..+.+++...+         +....+..++..| .+|..+-||..|+++|...|+.+++  +.+
T Consensus       257 NLGnV~ke~~~~d~Avs~Y~rAl~lrp---------n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~A--y~N  325 (966)
T KOG4626|consen  257 NLGNVYKEARIFDRAVSCYLRALNLRP---------NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDA--YNN  325 (966)
T ss_pred             hHHHHHHHHhcchHHHHHHHHHHhcCC---------cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHH--HhH
Confidence            467777888888888888777775443         3344566677776 7888888888888888888888777  557


Q ss_pred             HHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Q 013696           90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK  168 (438)
Q Consensus        90 ~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~  168 (438)
                      +|+++-..|+..+|+.||.+|+.+.|+ +.+.+|+|.+|..+|.+++|...|.+++...|..+.++.++|.+|..+|+++
T Consensus       326 lanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~  405 (966)
T KOG4626|consen  326 LANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLD  405 (966)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHH
Confidence            777777777777777777777777776 6666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhch
Q 013696          169 ESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKA  206 (438)
Q Consensus       169 eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~  206 (438)
                      +|+.+|+.++++.|...++          .+....|...|.++|..++
T Consensus       406 ~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP  453 (966)
T KOG4626|consen  406 DAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP  453 (966)
T ss_pred             HHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence            6666666666666665554          3444555555555555544

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.80  E-value=2.9e-19  Score=179.02  Aligned_cols=185  Identities=24%  Similarity=0.284  Sum_probs=160.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHH
Q 013696           10 LDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEK   88 (438)
Q Consensus        10 ~~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~   88 (438)
                      -++++.+++.+..+++-..+.+++..++         .-..++..+|..| .+|+...||.+|.+++.++|+..++  |.
T Consensus       188 s~lgnLlka~Grl~ea~~cYlkAi~~qp---------~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dA--Yi  256 (966)
T KOG4626|consen  188 SDLGNLLKAEGRLEEAKACYLKAIETQP---------CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDA--YI  256 (966)
T ss_pred             cchhHHHHhhcccchhHHHHHHHHhhCC---------ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHH--Hh
Confidence            3567788888888888888888888775         3456778899888 8899999999999999999999999  67


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Q 013696           89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL  167 (438)
Q Consensus        89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~  167 (438)
                      ++|++|-..+.|+.|+.||.+|+.+.|+ +.++.|+|.+|..+|..+-|+..|++||.+.|+.+.||.++|.++...|+.
T Consensus       257 NLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V  336 (966)
T KOG4626|consen  257 NLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSV  336 (966)
T ss_pred             hHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccch
Confidence            9999999999999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhc
Q 013696          168 KESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       168 ~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~  205 (438)
                      .+|..+|.++|.+.|..+++          ++.+++|..+|.++++..
T Consensus       337 ~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~  384 (966)
T KOG4626|consen  337 TEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF  384 (966)
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC
Confidence            99999999999999988877          344556666666666544

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.79  E-value=1.1e-18  Score=163.02  Aligned_cols=119  Identities=42%  Similarity=0.614  Sum_probs=112.2

Q ss_pred             ChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 013696           81 TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  159 (438)
Q Consensus        81 ~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~  159 (438)
                      ...+..++..|+-+++.++|.+|+..|++||+++|. +..|+|+|.+|.++|.|+.|+++|+.||.+||.+.++|.|+|.
T Consensus        78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~  157 (304)
T KOG0553|consen   78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGL  157 (304)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            345677999999999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696          160 ARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (438)
Q Consensus       160 a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (438)
                      +|..+|+|.+|++.|+++|.|+|+|...+..|.-|...++
T Consensus       158 A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~  197 (304)
T KOG0553|consen  158 AYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLN  197 (304)
T ss_pred             HHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999988888887776554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.70  E-value=5.5e-16  Score=134.88  Aligned_cols=129  Identities=15%  Similarity=0.142  Sum_probs=120.5

Q ss_pred             hHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696           67 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN  145 (438)
Q Consensus        67 Ai~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~  145 (438)
                      -..+|++++.++|++     +..+|..++..|+|++|+.+|.+++.++|. ..+|.++|.++..+|++++|+..|.+++.
T Consensus        12 ~~~~~~~al~~~p~~-----~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         12 PEDILKQLLSVDPET-----VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHHcCHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            357899999999864     447899999999999999999999999999 99999999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013696          146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (438)
Q Consensus       146 l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~k  200 (438)
                      ++|+++.+++++|.++..+|++++|+..|++++.+.|+++..+...+.+...++.
T Consensus        87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~  141 (144)
T PRK15359         87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT  141 (144)
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888887776654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.68  E-value=5.8e-16  Score=165.97  Aligned_cols=178  Identities=11%  Similarity=0.156  Sum_probs=151.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc
Q 013696           20 QDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK   98 (438)
Q Consensus        20 ~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g   98 (438)
                      +.|+++++...+.+....      ..+.....+..+|..| ..|++++|+..|++++.++|....+  +..+|.++...|
T Consensus       308 ~~y~~A~~~~~~al~~~~------~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~--~~~la~~~~~~g  379 (615)
T TIGR00990       308 ESYEEAARAFEKALDLGK------LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQS--YIKRASMNLELG  379 (615)
T ss_pred             hhHHHHHHHHHHHHhcCC------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHCC
Confidence            567788877777775431      1122233445566666 8899999999999999999998887  679999999999


Q ss_pred             cHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013696           99 KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA  177 (438)
Q Consensus        99 ~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~a  177 (438)
                      +|++|+.+|.++++++|+ +.+|+++|.+|+.+|++++|+.+|++++.++|++..+++.+|.++..+|++++|+..|+++
T Consensus       380 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a  459 (615)
T TIGR00990       380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC  459 (615)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999999999999 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCHHHH----------HHHHHHHHHHHHHHhhc
Q 013696          178 LRLEPQNQEIK----------KQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       178 l~l~P~~~~~~----------~~l~~a~~~~~ka~~~~  205 (438)
                      +.+.|.++.++          +++.+|+..|.+++.+.
T Consensus       460 l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~  497 (615)
T TIGR00990       460 KKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE  497 (615)
T ss_pred             HHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            99999998773          44566666666666544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=1.2e-16  Score=162.44  Aligned_cols=194  Identities=24%  Similarity=0.246  Sum_probs=159.9

Q ss_pred             HHHHHHHHHhHH---------HHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCC
Q 013696            9 ALDFQGFLNDLQ---------DWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNE   78 (438)
Q Consensus         9 ~~~l~~~~~~l~---------~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~   78 (438)
                      +..+.+.++.++         .|++++....+-..+.         .+....+..+|.+| .+++|++|..+|+.+-..+
T Consensus       313 ~~~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~---------~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~  383 (638)
T KOG1126|consen  313 ASELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHH---------YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE  383 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhc---------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            445555555544         5666666555522222         22334557788887 9999999999997775554


Q ss_pred             C----------------------------------CChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHH
Q 013696           79 E----------------------------------STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR  123 (438)
Q Consensus        79 p----------------------------------~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~l  123 (438)
                      |                                  +.++.  |..+||||--+++++.||++|.+|++++|. +.+|..+
T Consensus       384 p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPes--Wca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLl  461 (638)
T KOG1126|consen  384 PYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPES--WCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLL  461 (638)
T ss_pred             cccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHH--HHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhc
Confidence            4                                  33455  889999999999999999999999999998 9999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHH
Q 013696          124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAE  193 (438)
Q Consensus       124 a~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~  193 (438)
                      |.=+.....|+.|..+|+.||.++|++..|||.+|.+|.++++++.|.-.|++|+.++|.+..+          .+..++
T Consensus       462 GhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~  541 (638)
T KOG1126|consen  462 GHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDK  541 (638)
T ss_pred             CChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhH
Confidence            9999999999999999999999999999999999999999999999999999999999999765          677889


Q ss_pred             HHHHHHHHHhhchhhhhhhh
Q 013696          194 VKSLYEKEVFQKASKTLEKY  213 (438)
Q Consensus       194 a~~~~~ka~~~~~~~~~~~~  213 (438)
                      |+.+|++|+.+++.++..+.
T Consensus       542 AL~~~~~A~~ld~kn~l~~~  561 (638)
T KOG1126|consen  542 ALQLYEKAIHLDPKNPLCKY  561 (638)
T ss_pred             HHHHHHHHHhcCCCCchhHH
Confidence            99999999998877665433

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.66  E-value=1.4e-15  Score=163.01  Aligned_cols=182  Identities=16%  Similarity=0.153  Sum_probs=153.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHH
Q 013696           13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELG   91 (438)
Q Consensus        13 ~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g   91 (438)
                      +.+...+++|++++....+.+...+         .....+..+|..| ..|++++|+..|++++..+|+++.+  ++.+|
T Consensus       338 g~~~~~~g~~~eA~~~~~kal~l~P---------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~--~~~lg  406 (615)
T TIGR00990       338 GTFKCLKGKHLEALADLSKSIELDP---------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI--YYHRA  406 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCC---------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHH
Confidence            3444456678888888777776543         1112334455555 8899999999999999999999888  77999


Q ss_pred             HHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHH
Q 013696           92 NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES  170 (438)
Q Consensus        92 ~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA  170 (438)
                      .+++..|+|++|+.+|.+++.++|+ ..++.++|.++..+|++++|+..|++++..+|+++.+++.+|.++..+|++++|
T Consensus       407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A  486 (615)
T TIGR00990       407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEA  486 (615)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence            9999999999999999999999999 888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHH-----------------HHHHHHHHHHHHHHHhhc
Q 013696          171 IEDSEFALRLEPQNQEI-----------------KKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       171 ~~~~~~al~l~P~~~~~-----------------~~~l~~a~~~~~ka~~~~  205 (438)
                      +..|++++.++|.+...                 .+++.+|...|++++.++
T Consensus       487 ~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~  538 (615)
T TIGR00990       487 IEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID  538 (615)
T ss_pred             HHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            99999999999975321                 256667777777776654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=2.9e-15  Score=149.20  Aligned_cols=147  Identities=28%  Similarity=0.428  Sum_probs=131.0

Q ss_pred             CCCCCCcC-cCCCccchHHHHHhhhcCCCC--C----------------------hhHHHHHHHHHHHHHhccHHHHHHH
Q 013696           52 KKPSPSGN-SYSRNYDPVSHISSSLMNEES--T----------------------PDATSEKELGNECFKQKKFKEAIDC  106 (438)
Q Consensus        52 ~~~~~~~y-~~g~~~eAi~~~~~al~~~p~--~----------------------~~a~~~~~~g~~~~~~g~y~~Ai~~  106 (438)
                      +.++|.+| ..++++.|+.+|.+++...-.  .                      ..+...+..|+.+|+.|+|..|+.+
T Consensus       301 ~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~  380 (539)
T KOG0548|consen  301 LARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKH  380 (539)
T ss_pred             HHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence            35688888 789999999999998874422  1                      0122267889999999999999999


Q ss_pred             HHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696          107 YSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       107 y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~  185 (438)
                      |+++|..+|+ +.+|.|||.||.+++.+..|+.+|..+++++|++.++|+|.|.++..+.+|+.|.+.|++++.++|.+.
T Consensus       381 YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~  460 (539)
T KOG0548|consen  381 YTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA  460 (539)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence            9999999999 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 013696          186 EIKKQLAEVKSLY  198 (438)
Q Consensus       186 ~~~~~l~~a~~~~  198 (438)
                      ++...+.++....
T Consensus       461 e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  461 EAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHHHHh
Confidence            8888877777644

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=1.4e-15  Score=154.68  Aligned_cols=155  Identities=14%  Similarity=0.170  Sum_probs=139.8

Q ss_pred             ccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHH
Q 013696           46 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR  123 (438)
Q Consensus        46 ~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~l  123 (438)
                      +..+..+-.+|.+| .+++++.|+.+|.++++++|++..+  |-.+|.-+.....|+.|..+|+.||.++|. ..+|+.+
T Consensus       418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYa--yTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl  495 (638)
T KOG1126|consen  418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYA--YTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL  495 (638)
T ss_pred             CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchh--hhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh
Confidence            44455778899999 7789999999999999999998888  459999999999999999999999999999 9999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHH
Q 013696          124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAE  193 (438)
Q Consensus       124 a~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~  193 (438)
                      |++|+++++++.|+-+|++|+.++|.+.....-+|..+.++|+.++|+..|++|+.++|.++-.          .+.+.+
T Consensus       496 G~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e  575 (638)
T KOG1126|consen  496 GTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE  575 (638)
T ss_pred             hhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence            9999999999999999999999999999999999999999999999999999999999999755          345555


Q ss_pred             HHHHHHHHH
Q 013696          194 VKSLYEKEV  202 (438)
Q Consensus       194 a~~~~~ka~  202 (438)
                      |+..+++..
T Consensus       576 al~~LEeLk  584 (638)
T KOG1126|consen  576 ALQELEELK  584 (638)
T ss_pred             HHHHHHHHH
Confidence            555555433

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=8.1e-15  Score=141.72  Aligned_cols=142  Identities=34%  Similarity=0.583  Sum_probs=128.3

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhH----------HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----HHHHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDA----------TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANR  123 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a----------~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----~~~~~~l  123 (438)
                      |..++.+.|+.+|.++|.++|+...+          ..++..|+..++.|+|..|.++|+.+|.++|+     +.+|.|+
T Consensus       214 yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr  293 (486)
T KOG0550|consen  214 YYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR  293 (486)
T ss_pred             ccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence            58889999999999999999987542          33789999999999999999999999999998     7789999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013696          124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE  201 (438)
Q Consensus       124 a~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ka  201 (438)
                      |.+...+|+..+|+.+|..|+.+|+.+.++|.++|.|+..+++|++|+++|++|+++..+ .+....+.+|...+.++
T Consensus       294 a~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkS  370 (486)
T KOG0550|consen  294 ALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKS  370 (486)
T ss_pred             HhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999987 66666666666655543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.59  E-value=2.8e-14  Score=135.01  Aligned_cols=97  Identities=24%  Similarity=0.264  Sum_probs=89.9

Q ss_pred             CCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh
Q 013696           53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  130 (438)
Q Consensus        53 ~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l  130 (438)
                      +..|..| .+|+|++||.+|.+++..+|.++..  +.+++.+|++.++|..|...++.|+.++.. ..+|..+|.+-..+
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~--~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L  178 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY--HINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL  178 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccc--hhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            4556666 9999999999999999999999888  559999999999999999999999999988 99999999999999


Q ss_pred             cCHHHHHHHHHHHhhcCCccH
Q 013696          131 RRFQEAEDDCTEALNLDDRYI  151 (438)
Q Consensus       131 ~~~~eA~~~~~~al~l~p~~~  151 (438)
                      |+..+|.++|+.+|.+.|.+.
T Consensus       179 g~~~EAKkD~E~vL~LEP~~~  199 (536)
T KOG4648|consen  179 GNNMEAKKDCETVLALEPKNI  199 (536)
T ss_pred             hhHHHHHHhHHHHHhhCcccH
Confidence            999999999999999999764

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.58  E-value=6.8e-14  Score=119.82  Aligned_cols=126  Identities=17%  Similarity=0.239  Sum_probs=115.8

Q ss_pred             HHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 013696           69 SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD  147 (438)
Q Consensus        69 ~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~  147 (438)
                      +.|.+++..+|++..+  ...+|..++..|+|++|+..|++++..+|. +.++.++|.++..+|++++|+..+.+++.++
T Consensus         4 ~~~~~~l~~~p~~~~~--~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQ--IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHHcCChhhHHH--HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4688999999998777  669999999999999999999999999998 9999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696          148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (438)
Q Consensus       148 p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  196 (438)
                      |+++..++.+|.++...|++++|+..|+++++++|++.....-...+..
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  130 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEA  130 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999876544444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.56  E-value=9.2e-14  Score=127.38  Aligned_cols=125  Identities=15%  Similarity=0.149  Sum_probs=117.1

Q ss_pred             CCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHH-HHhcC--HHHH
Q 013696           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY-LKLRR--FQEA  136 (438)
Q Consensus        61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~-~~l~~--~~eA  136 (438)
                      .++.++++..+.+++..+|++..+  |..+|.+|...|++++|+.+|.++++++|+ +.++.++|.++ ...|+  +++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~--w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQ--WALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            566789999999999999999998  779999999999999999999999999999 99999999985 67787  5999


Q ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       137 ~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      ...+++++.++|+++.+++.+|.++..+|+|++|+.+|+++++++|.+..-
T Consensus       130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r  180 (198)
T PRK10370        130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR  180 (198)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence            999999999999999999999999999999999999999999999887544

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=1.5e-13  Score=133.73  Aligned_cols=118  Identities=35%  Similarity=0.496  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLD  147 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----------------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~  147 (438)
                      +...+..|+.||+.|+|..|+..|.+|+..-..                ..++.|++.||+++++|..|+..|.++|.++
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~  287 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD  287 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            444789999999999999999999999886331                3679999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013696          148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE  201 (438)
Q Consensus       148 p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ka  201 (438)
                      |+|++|+||+|.++..+|+|+.|+.+|++|++++|.|..+..++..+...+.+.
T Consensus       288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988877776655543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.53  E-value=1.3e-13  Score=121.80  Aligned_cols=107  Identities=36%  Similarity=0.616  Sum_probs=100.8

Q ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHH
Q 013696           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  156 (438)
Q Consensus        83 ~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~  156 (438)
                      .+..++..|+-+|+.|+|++|...|..||.+.|.      ..+|.|+|.|+++++.++.|+.+|.+||+++|.+.+|+.|
T Consensus        94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~R  173 (271)
T KOG4234|consen   94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALER  173 (271)
T ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHH
Confidence            3555889999999999999999999999999987      6789999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 013696          157 RATARKELGKLKESIEDSEFALRLEPQNQEIKK  189 (438)
Q Consensus       157 lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~  189 (438)
                      +|.+|.++.+|++|+++|.+++.++|...++..
T Consensus       174 RAeayek~ek~eealeDyKki~E~dPs~~ear~  206 (271)
T KOG4234|consen  174 RAEAYEKMEKYEEALEDYKKILESDPSRREARE  206 (271)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence            999999999999999999999999999876643

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.53  E-value=2.7e-13  Score=132.29  Aligned_cols=125  Identities=21%  Similarity=0.169  Sum_probs=115.0

Q ss_pred             CCCccchHHHHHhhhcCCCCCh--hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696           61 YSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        61 ~g~~~eAi~~~~~al~~~p~~~--~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~  137 (438)
                      .+..+.++..+.++|...+.++  .+..++.+|.+|...|++++|+..|.++++++|+ +.+|+++|.+|..+|++++|+
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            3567889999999997544332  2445889999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~  185 (438)
                      ..|+++++++|++..+|+++|.++...|++++|+.+|+++++++|+++
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999999999999999999999999999997

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.52  E-value=4.4e-13  Score=123.52  Aligned_cols=167  Identities=18%  Similarity=0.119  Sum_probs=137.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL   90 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~   90 (438)
                      +...+-..+++++++....+.+...+         .....+..+|..| ..|++++|+..|.+++...|.+..+  +..+
T Consensus        37 la~~~~~~~~~~~A~~~~~~~l~~~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~  105 (234)
T TIGR02521        37 LALGYLEQGDLEVAKENLDKALEHDP---------DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDV--LNNY  105 (234)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCc---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH--HHHH
Confidence            34444556677787777777765543         1112334455556 7899999999999999999888777  6699


Q ss_pred             HHHHHHhccHHHHHHHHHHHhccC--CC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Q 013696           91 GNECFKQKKFKEAIDCYSRSIALS--PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL  167 (438)
Q Consensus        91 g~~~~~~g~y~~Ai~~y~~al~~~--p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~  167 (438)
                      |.+++..|++++|+..|.+++...  +. ...+.++|.++...|++++|+..|.+++..+|+++.++..+|.++...|++
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  185 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY  185 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence            999999999999999999999864  33 678899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHH
Q 013696          168 KESIEDSEFALRLEPQNQEIKK  189 (438)
Q Consensus       168 ~eA~~~~~~al~l~P~~~~~~~  189 (438)
                      ++|+..+++++.+.|.++..+.
T Consensus       186 ~~A~~~~~~~~~~~~~~~~~~~  207 (234)
T TIGR02521       186 KDARAYLERYQQTYNQTAESLW  207 (234)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHH
Confidence            9999999999999888766643

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=2.3e-13  Score=133.35  Aligned_cols=138  Identities=20%  Similarity=0.175  Sum_probs=126.0

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  132 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~  132 (438)
                      +|+-| -.++.++|+.+|+++|+++|+...+  |-.+|.-|..+++...|+.+|++|++++|. -.+|+.+|++|-.++.
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~a--WTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M  413 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSA--WTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM  413 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhcCcchhHH--HHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc
Confidence            44445 4578999999999999999999988  559999999999999999999999999998 9999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013696          133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (438)
Q Consensus       133 ~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a  194 (438)
                      ..=|+-+|++|+.+.|+++..|..+|.||.++++.++|+.+|.+|+...-.+..+...++++
T Consensus       414 h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL  475 (559)
T KOG1155|consen  414 HFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL  475 (559)
T ss_pred             hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988877764444433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.51  E-value=3.4e-13  Score=134.70  Aligned_cols=113  Identities=32%  Similarity=0.457  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg  165 (438)
                      +...|..++..|+|++|+.+|.++|+++|+ +.+|+++|.+|+.+|+|++|+.++++++.++|+++.+|+++|.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            568899999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696          166 KLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (438)
Q Consensus       166 ~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (438)
                      +|++|+.+|++++.++|++..+...+..+...+.
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888877776664

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.50  E-value=2.5e-13  Score=150.46  Aligned_cols=125  Identities=10%  Similarity=0.015  Sum_probs=110.3

Q ss_pred             CCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHH
Q 013696           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD  139 (438)
Q Consensus        61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~  139 (438)
                      .|++++|+..|++++..+|+ ..+  +..+|.++.+.|++++|+.+|.+++.++|+ +.++.++|.++...|++++|+..
T Consensus       589 ~Gr~~eAl~~~~~AL~l~P~-~~a--~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~  665 (987)
T PRK09782        589 PGQPELALNDLTRSLNIAPS-ANA--YVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM  665 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCC-HHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            48899999999999988885 555  678899999999999999999999999998 88899999999999999999999


Q ss_pred             HHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696          140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (438)
Q Consensus       140 ~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~  188 (438)
                      |.+++.++|+++.+++++|.++..+|++++|+.+|++++.++|++..+.
T Consensus       666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~  714 (987)
T PRK09782        666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT  714 (987)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence            9999999999999999999999999999999999999999999887773

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.50  E-value=5.6e-13  Score=130.06  Aligned_cols=125  Identities=19%  Similarity=0.106  Sum_probs=105.5

Q ss_pred             CCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHH
Q 013696           52 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK  129 (438)
Q Consensus        52 ~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~  129 (438)
                      +...|..| ..|++++|+..|.+++.++|+++.+  ++.+|..+...|+|++|+..|.++++++|+ ..+|.++|.++..
T Consensus        67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a--~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  144 (296)
T PRK11189         67 HYERGVLYDSLGLRALARNDFSQALALRPDMADA--YNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY  144 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            44556666 8899999999999999999999888  779999999999999999999999999999 9999999999999


Q ss_pred             hcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013696          130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR  179 (438)
Q Consensus       130 l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~  179 (438)
                      .|++++|+.+|++++.++|+++.....+ ..+...+++++|+..|.+++.
T Consensus       145 ~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~~~~  193 (296)
T PRK11189        145 GGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENLKQRYE  193 (296)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHHHHh
Confidence            9999999999999999999987322111 123345677777777765543

>PRK12370 invasion protein regulator; Provisional

Probab=99.49  E-value=2.1e-13  Score=144.23  Aligned_cols=130  Identities=14%  Similarity=0.033  Sum_probs=118.6

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..+++.+|+..+++++.++|+++.+  +..+|.++...|++++|+.+|+++++++|+ +.+++++|.++...|++++|+.
T Consensus       316 ~~~~~~~A~~~~~~Al~ldP~~~~a--~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~  393 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELDHNNPQA--LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQ  393 (553)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            3456899999999999999999988  669999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE-PQNQEIKKQL  191 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~-P~~~~~~~~l  191 (438)
                      .+++++.++|.++.+++.++.++...|++++|+..+++++..+ |+++.++..+
T Consensus       394 ~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~l  447 (553)
T PRK12370        394 TINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQ  447 (553)
T ss_pred             HHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHH
Confidence            9999999999999888888888888999999999999999886 7777654333

>PRK12370 invasion protein regulator; Provisional

Probab=99.49  E-value=3.5e-13  Score=142.60  Aligned_cols=141  Identities=9%  Similarity=-0.010  Sum_probs=122.9

Q ss_pred             CCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHh---------ccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh
Q 013696           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ---------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  130 (438)
Q Consensus        61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~---------g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l  130 (438)
                      .+.+++|+.+|++++.++|++..+  +..+|.++...         +++++|+..++++++++|+ +.++..+|.++...
T Consensus       274 ~~~~~~A~~~~~~Al~ldP~~a~a--~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~  351 (553)
T PRK12370        274 PYSLQQALKLLTQCVNMSPNSIAP--YCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH  351 (553)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence            356789999999999999999887  55888887644         4489999999999999999 99999999999999


Q ss_pred             cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----------HHHHHHHHHHHH
Q 013696          131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEK  200 (438)
Q Consensus       131 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~k  200 (438)
                      |++++|+..|++++.++|+++.+|+.+|.++...|++++|+..|+++++++|.++...          +.+++|...+.+
T Consensus       352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~  431 (553)
T PRK12370        352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE  431 (553)
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999986542          334555555555


Q ss_pred             HHh
Q 013696          201 EVF  203 (438)
Q Consensus       201 a~~  203 (438)
                      ++.
T Consensus       432 ~l~  434 (553)
T PRK12370        432 LRS  434 (553)
T ss_pred             HHH
Confidence            443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.48  E-value=6.8e-13  Score=122.23  Aligned_cols=133  Identities=14%  Similarity=0.145  Sum_probs=121.3

Q ss_pred             CCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc
Q 013696           54 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR  131 (438)
Q Consensus        54 ~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~  131 (438)
                      .+|..| ..|++++|+..+.+++..+|.+..+  +..+|.+++..|++++|+..|.+++...|. ..++.++|.++...|
T Consensus        36 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g  113 (234)
T TIGR02521        36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLA--YLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG  113 (234)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence            344455 7899999999999999999988877  669999999999999999999999999998 889999999999999


Q ss_pred             CHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696          132 RFQEAEDDCTEALNLD--DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (438)
Q Consensus       132 ~~~eA~~~~~~al~l~--p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~  188 (438)
                      ++++|+..|.+++...  +.....++.+|.++...|++++|...|.+++..+|.+..++
T Consensus       114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  172 (234)
T TIGR02521       114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESL  172 (234)
T ss_pred             cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHH
Confidence            9999999999999864  45678899999999999999999999999999999987764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.48  E-value=8e-13  Score=146.50  Aligned_cols=152  Identities=16%  Similarity=0.115  Sum_probs=137.7

Q ss_pred             CCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHH
Q 013696           56 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQ  134 (438)
Q Consensus        56 ~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~  134 (438)
                      |..+ ..|++++|+.+|.+++..+|.....  +..++..+...|++++|+.+|.++++++|++.++.++|.++.++|+++
T Consensus       549 a~all~~Gd~~eA~~~l~qAL~l~P~~~~l--~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~d  626 (987)
T PRK09782        549 ANTAQAAGNGAARDRWLQQAEQRGLGDNAL--YWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVP  626 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHH
Confidence            3444 7899999999999999999887665  446677777789999999999999999999888999999999999999


Q ss_pred             HHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhh
Q 013696          135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQ  204 (438)
Q Consensus       135 eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~  204 (438)
                      +|+..|.+++.++|+++.+++++|.++...|++++|+..|+++++++|+++.+          .+++.+|...|++++.+
T Consensus       627 eA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l  706 (987)
T PRK09782        627 AAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD  706 (987)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999987          46677888999999998


Q ss_pred             chhhh
Q 013696          205 KASKT  209 (438)
Q Consensus       205 ~~~~~  209 (438)
                      .+...
T Consensus       707 ~P~~a  711 (987)
T PRK09782        707 IDNQA  711 (987)
T ss_pred             CCCCc
Confidence            87653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.47  E-value=5.3e-13  Score=143.78  Aligned_cols=147  Identities=13%  Similarity=0.145  Sum_probs=128.8

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHH----HHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKE----AIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ  134 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~----Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~  134 (438)
                      ..|++++|+..|.+++..+|++..+  +..+|..++..|++++    |+..|++++.++|+ +.++.++|.++...|+++
T Consensus       224 ~~g~~~eA~~~~~~al~~~p~~~~~--~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~  301 (656)
T PRK15174        224 AVGKYQEAIQTGESALARGLDGAAL--RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNE  301 (656)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence            6789999999999999999988777  6689999999999986    89999999999998 889999999999999999


Q ss_pred             HHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhh
Q 013696          135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQ  204 (438)
Q Consensus       135 eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~  204 (438)
                      +|+..+++++.++|+++.++..+|.++..+|++++|+..|++++..+|++...          .++.++|...|.+++..
T Consensus       302 eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        302 KAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999987543          34667888888888777


Q ss_pred             chhh
Q 013696          205 KASK  208 (438)
Q Consensus       205 ~~~~  208 (438)
                      .+..
T Consensus       382 ~P~~  385 (656)
T PRK15174        382 RASH  385 (656)
T ss_pred             Chhh
Confidence            6543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.46  E-value=9.5e-13  Score=141.79  Aligned_cols=176  Identities=12%  Similarity=0.088  Sum_probs=146.7

Q ss_pred             HhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccc----hHHHHHhhhcCCCCChhHHHHHHHH
Q 013696           17 NDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYD----PVSHISSSLMNEESTPDATSEKELG   91 (438)
Q Consensus        17 ~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~e----Ai~~~~~al~~~p~~~~a~~~~~~g   91 (438)
                      ..++++++++....+.+...+         ........+|..| ..|++++    |+..|++++..+|++..+  +..+|
T Consensus       223 ~~~g~~~eA~~~~~~al~~~p---------~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a--~~~lg  291 (656)
T PRK15174        223 CAVGKYQEAIQTGESALARGL---------DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRI--VTLYA  291 (656)
T ss_pred             HHCCCHHHHHHHHHHHHhcCC---------CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHH--HHHHH
Confidence            344556666655555554332         1222334456666 7889886    899999999999998887  66999


Q ss_pred             HHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHH
Q 013696           92 NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES  170 (438)
Q Consensus        92 ~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA  170 (438)
                      ..+...|++++|+.+|++++.++|+ +.++.++|.+|...|++++|+..|.+++..+|+++.++..+|.++..+|++++|
T Consensus       292 ~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA  371 (656)
T PRK15174        292 DALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEA  371 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999999999999 889999999999999999999999999999999998888899999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013696          171 IEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       171 ~~~~~~al~l~P~~~~~~~~l~~a~~~~~ka~~~~  205 (438)
                      +..|+++++++|++.  ...+.+|...|.+++...
T Consensus       372 ~~~l~~al~~~P~~~--~~~~~ea~~~~~~~~~~~  404 (656)
T PRK15174        372 ESVFEHYIQARASHL--PQSFEEGLLALDGQISAV  404 (656)
T ss_pred             HHHHHHHHHhChhhc--hhhHHHHHHHHHHHHHhc
Confidence            999999999999875  445567888888777654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.46  E-value=4e-13  Score=121.47  Aligned_cols=130  Identities=18%  Similarity=0.121  Sum_probs=121.0

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  132 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~  132 (438)
                      +|..| ..|++..|...++++|+++|++..+  |..++..|.+.|+.+.|-+.|++|+.++|+ ..++.|.|.-++.+|+
T Consensus        41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a--~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~  118 (250)
T COG3063          41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLA--HLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR  118 (250)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence            44456 8999999999999999999999999  559999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          133 FQEAEDDCTEALNLDDR---YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       133 ~~eA~~~~~~al~l~p~---~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      |++|...|++|+. +|.   -+..|-++|.|-.+.|+++.|..+|+++|+++|+++..
T Consensus       119 ~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~  175 (250)
T COG3063         119 PEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA  175 (250)
T ss_pred             hHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH
Confidence            9999999999996 454   46789999999999999999999999999999999876

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.46  E-value=2.2e-12  Score=111.61  Aligned_cols=112  Identities=10%  Similarity=-0.026  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg  165 (438)
                      .+.+|..++..|++++|...|+-+..++|. ...|+++|.|+..+|+|.+|+..|.+|+.++|+++.++++.|.|+..+|
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG  117 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence            789999999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013696          166 KLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (438)
Q Consensus       166 ~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (438)
                      +.+.|...|+.++.+.-.+++-..-..+|...+
T Consensus       118 ~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L  150 (157)
T PRK15363        118 NVCYAIKALKAVVRICGEVSEHQILRQRAEKML  150 (157)
T ss_pred             CHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence            999999999999999865554444444454444

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.46  E-value=5.6e-13  Score=115.94  Aligned_cols=104  Identities=13%  Similarity=0.092  Sum_probs=99.4

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..|++++|+..|.+++..+|.+..+  +..+|.++...|+|++|+.+|.+++.++|+ +.+++++|.|+..+|++++|+.
T Consensus        36 ~~g~~~~A~~~~~~al~~~P~~~~a--~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~  113 (144)
T PRK15359         36 QEGDYSRAVIDFSWLVMAQPWSWRA--HIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE  113 (144)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence            8899999999999999999999888  779999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELG  165 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg  165 (438)
                      .|.+++.++|+++.++.++|.+...++
T Consensus       114 ~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359        114 AFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            999999999999999999998876543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=1e-12  Score=128.94  Aligned_cols=159  Identities=17%  Similarity=0.121  Sum_probs=143.7

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL   90 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~   90 (438)
                      +++|+.-..+=|+++.....+++-.+         +-..++.-+|-.| .+.+...|++.|++|+.++|.+..+  |+.+
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkLNp---------~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA--WYGL  404 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKLNP---------KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA--WYGL  404 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhcCc---------chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH--Hhhh
Confidence            45677777777888888888886553         2334667788888 8999999999999999999998888  8899


Q ss_pred             HHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Q 013696           91 GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE  169 (438)
Q Consensus        91 g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~e  169 (438)
                      |..|--++-..-|+-+|++|+.+.|+ ...|..+|.||.++++.++|+++|.+|+.....+..++.++|.+|.+++++++
T Consensus       405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e  484 (559)
T KOG1155|consen  405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE  484 (559)
T ss_pred             hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence            99999999999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhC
Q 013696          170 SIEDSEFALRLE  181 (438)
Q Consensus       170 A~~~~~~al~l~  181 (438)
                      |..+|++.+...
T Consensus       485 Aa~~yek~v~~~  496 (559)
T KOG1155|consen  485 AAQYYEKYVEVS  496 (559)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999844

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.41  E-value=3.1e-12  Score=146.40  Aligned_cols=102  Identities=14%  Similarity=0.142  Sum_probs=54.4

Q ss_pred             CCCCcC-cCCCccchHHHHHhhhcCCCCChhH------------HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHH
Q 013696           54 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDA------------TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVA  119 (438)
Q Consensus        54 ~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a------------~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~  119 (438)
                      .+|..| ..|++++|+.+|++++..+|++...            +....+|..+...|++++|+.+|+++++++|. +.+
T Consensus       308 ~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a  387 (1157)
T PRK11447        308 ALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYA  387 (1157)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            344444 5555555555555555555544321            01123355555555555555555555555555 555


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHH
Q 013696          120 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS  155 (438)
Q Consensus       120 ~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~  155 (438)
                      +.++|.+|...|++++|+..|++++.++|++..++.
T Consensus       388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~  423 (1157)
T PRK11447        388 VLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR  423 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            555555555555555555555555555555554443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.39  E-value=3.1e-12  Score=115.73  Aligned_cols=157  Identities=18%  Similarity=0.126  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc
Q 013696           20 QDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK   98 (438)
Q Consensus        20 ~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g   98 (438)
                      ++...+-+..+++|++.+...         ..+..++..| ..|..+-|-+.|++++.++|++.++  +++.|..++.+|
T Consensus        49 gd~~~A~~nlekAL~~DPs~~---------~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV--LNNYG~FLC~qg  117 (250)
T COG3063          49 GDYAQAKKNLEKALEHDPSYY---------LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV--LNNYGAFLCAQG  117 (250)
T ss_pred             CCHHHHHHHHHHHHHhCcccH---------HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccch--hhhhhHHHHhCC
Confidence            455666667788887775111         1233344456 8899999999999999999999999  889999999999


Q ss_pred             cHHHHHHHHHHHhcc--CCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013696           99 KFKEAIDCYSRSIAL--SPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE  175 (438)
Q Consensus        99 ~y~~Ai~~y~~al~~--~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~  175 (438)
                      +|++|...|.+|+..  .+. +..|.|+|.|.++.|+++.|..+|++++.++|+++.+..-++..++..|+|-.|..+++
T Consensus       118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~  197 (250)
T COG3063         118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE  197 (250)
T ss_pred             ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence            999999999999983  233 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHH
Q 013696          176 FALRLEPQNQEI  187 (438)
Q Consensus       176 ~al~l~P~~~~~  187 (438)
                      +...-.+...+.
T Consensus       198 ~~~~~~~~~A~s  209 (250)
T COG3063         198 RYQQRGGAQAES  209 (250)
T ss_pred             HHHhcccccHHH
Confidence            988777655554

>PLN02789 farnesyltranstransferase

Probab=99.39  E-value=1.1e-11  Score=121.60  Aligned_cols=135  Identities=16%  Similarity=0.065  Sum_probs=124.4

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc-cHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCH--HH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK-KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF--QE  135 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g-~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~--~e  135 (438)
                      ..+.+++|+..+.++|.++|.+..+  |..+|.++...| ++++|+.++.+++..+|. ..+|.+++.++.++++.  ++
T Consensus        49 ~~e~serAL~lt~~aI~lnP~~yta--W~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~  126 (320)
T PLN02789         49 SDERSPRALDLTADVIRLNPGNYTV--WHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK  126 (320)
T ss_pred             cCCCCHHHHHHHHHHHHHCchhHHH--HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence            4578899999999999999999998  779999999998 689999999999999999 89999999999999874  78


Q ss_pred             HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696          136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (438)
Q Consensus       136 A~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  196 (438)
                      ++.++.+++.++|.|..+|..+|.++..+|+|++|++++.++|+++|.|..++....-+..
T Consensus       127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~  187 (320)
T PLN02789        127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT  187 (320)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999776665543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.38  E-value=4.5e-12  Score=139.74  Aligned_cols=143  Identities=18%  Similarity=0.157  Sum_probs=81.1

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..|++++|+..|.+++...|+. ..  +..+|.++...|++++|+..+.+++..+|+ ..+++++|.+|..+|++++|+.
T Consensus       715 ~~g~~~~A~~~~~~~~~~~~~~-~~--~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~  791 (899)
T TIGR02917       715 RQKDYPAAIQAYRKALKRAPSS-QN--AIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK  791 (899)
T ss_pred             HCCCHHHHHHHHHHHHhhCCCc-hH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence            5555666666666665555544 22  345555556666666666666666555555 5555555666666666666666


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhch
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKA  206 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~  206 (438)
                      .|++++..+|+++.++.++|.++...|+ .+|+..+++++.+.|+++..          .+++.+|...|++++...+
T Consensus       792 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       792 HYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            6666666666555555566666665555 55666666666555555544          2334445555555555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=9e-12  Score=123.01  Aligned_cols=151  Identities=16%  Similarity=0.188  Sum_probs=140.3

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  132 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~  132 (438)
                      .|.-+ -.|++-.|.+.++.+|.++|.+...  |..+|..|....+-++-...|.+|..++|. +.+|+.||.+++-+++
T Consensus       332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l--yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q  409 (606)
T KOG0547|consen  332 RGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL--YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ  409 (606)
T ss_pred             hhhhhhhcCCchhhhhhHHHHHhcCcccchH--HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH
Confidence            34433 7799999999999999999988887  669999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHH
Q 013696          133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEV  202 (438)
Q Consensus       133 ~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~  202 (438)
                      |++|+.+|++++.++|.++-+|..++.+.+++++++++...|+.+.+--|..++.          ++++..|.+.|.+++
T Consensus       410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai  489 (606)
T KOG0547|consen  410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI  489 (606)
T ss_pred             HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999887          678888999999998


Q ss_pred             hhchh
Q 013696          203 FQKAS  207 (438)
Q Consensus       203 ~~~~~  207 (438)
                      .+.+.
T Consensus       490 ~LE~~  494 (606)
T KOG0547|consen  490 ELEPR  494 (606)
T ss_pred             hhccc
Confidence            88743

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.37  E-value=8.6e-12  Score=125.89  Aligned_cols=125  Identities=14%  Similarity=0.067  Sum_probs=66.7

Q ss_pred             cCCCccchHHHHHhhhcCCCCChh---HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPD---ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE  135 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~---a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~e  135 (438)
                      ..|++++|+..+.+++...|....   +..+..+|..+...|++++|+.+|.++++.+|+ ..++..+|.+|...|++++
T Consensus       153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  232 (389)
T PRK11788        153 QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAA  232 (389)
T ss_pred             HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHH
Confidence            445555555555555554443321   112334555555555555555555555555555 4555555555555555555


Q ss_pred             HHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          136 AEDDCTEALNLDDRY-IKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       136 A~~~~~~al~l~p~~-~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      |+..+.+++..+|.+ ..++..++.+|...|++++|+..+++++.+.|+.
T Consensus       233 A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~  282 (389)
T PRK11788        233 AIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA  282 (389)
T ss_pred             HHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            555555555555544 2344555555555555555555555555555544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=3.4e-12  Score=127.51  Aligned_cols=109  Identities=36%  Similarity=0.543  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg  165 (438)
                      ++..|+..+..|+|+.|+.+|..+|.++|. ...|.|+..||..+|+|++|+++..++++++|+.+++|.++|.++..+|
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG   84 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence            568899999999999999999999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013696          166 KLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (438)
Q Consensus       166 ~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  195 (438)
                      +|++|+..|.+.|+.+|+|..+...+.++.
T Consensus        85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             cHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999988888887

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.34  E-value=1e-11  Score=142.17  Aligned_cols=132  Identities=16%  Similarity=0.171  Sum_probs=119.7

Q ss_pred             CCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HH--------------H
Q 013696           56 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AV--------------A  119 (438)
Q Consensus        56 ~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~--------------~  119 (438)
                      |..+ ..|++++|+..|++++..+|++..+  +..+|.+|+..|++++|+.+|+++++++|+ ..              .
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a--~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKDSEA--LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            4444 7899999999999999999999888  679999999999999999999999999987 21              1


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 013696          120 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK  189 (438)
Q Consensus       120 ~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~  189 (438)
                      ...+|.+++..|++++|+..|++++.++|+++.+++.+|.++...|++++|+..|+++++++|++..++.
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~  423 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR  423 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            2355889999999999999999999999999999999999999999999999999999999999987643

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.34  E-value=5.7e-12  Score=118.30  Aligned_cols=119  Identities=18%  Similarity=0.237  Sum_probs=107.9

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..++|.+|+..|.+||.++|.++..  |.+++.+|.+.|.|+.|++....||.+||. ..+|..+|.+|+.+|+|++|+.
T Consensus        93 ~~~~Y~eAv~kY~~AI~l~P~nAVy--ycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~  170 (304)
T KOG0553|consen   93 KNKDYQEAVDKYTEAIELDPTNAVY--YCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE  170 (304)
T ss_pred             HhhhHHHHHHHHHHHHhcCCCcchH--HHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence            7789999999999999999999887  569999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhh
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLK---ESIEDSEFALRL  180 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~---eA~~~~~~al~l  180 (438)
                      .|.+||.++|++...+.+|..+...++...   .+...++-+..+
T Consensus       171 aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~i  215 (304)
T KOG0553|consen  171 AYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLI  215 (304)
T ss_pred             HHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhc
Confidence            999999999999999999999998888766   444444444443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=8.1e-12  Score=123.32  Aligned_cols=153  Identities=18%  Similarity=0.243  Sum_probs=139.2

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  132 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~  132 (438)
                      ++..| ..++-.+-...|..+..++|.+++.  |+.+|..++-.++|++|+..|+++++++|. +.+|..++.+.+++++
T Consensus       366 ~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dv--YyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k  443 (606)
T KOG0547|consen  366 RAAAYADENQSEKMWKDFNKAEDLDPENPDV--YYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHK  443 (606)
T ss_pred             HHHHHhhhhccHHHHHHHHHHHhcCCCCCch--hHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHH
Confidence            33445 6778888999999999999999999  779999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHH-----------HHHHHHHH
Q 013696          133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ------NQEI-----------KKQLAEVK  195 (438)
Q Consensus       133 ~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~------~~~~-----------~~~l~~a~  195 (438)
                      ++++...|+.++...|+.+..|...|.++..+++|+.|++.|.+|+.|.|.      +...           .+++..|.
T Consensus       444 ~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~  523 (606)
T KOG0547|consen  444 IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAE  523 (606)
T ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHH
Confidence            999999999999999999999999999999999999999999999999998      3221           57888999


Q ss_pred             HHHHHHHhhchhhh
Q 013696          196 SLYEKEVFQKASKT  209 (438)
Q Consensus       196 ~~~~ka~~~~~~~~  209 (438)
                      .++.+++++++.-.
T Consensus       524 ~Ll~KA~e~Dpkce  537 (606)
T KOG0547|consen  524 NLLRKAIELDPKCE  537 (606)
T ss_pred             HHHHHHHccCchHH
Confidence            99999999885433

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.33  E-value=2.1e-11  Score=134.52  Aligned_cols=151  Identities=15%  Similarity=0.122  Sum_probs=125.7

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  132 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~  132 (438)
                      .|..| ..|++++|+..|++++..+|+...+  +..+|.+++..|+|++|+..+.+++..+|. ..++..+|.++...|+
T Consensus       131 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  208 (899)
T TIGR02917       131 RGLAYLGLGQLELAQKSYEQALAIDPRSLYA--KLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGN  208 (899)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChhh--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Confidence            34444 6788999999999999988887777  668899999999999999999999998887 8888888999999999


Q ss_pred             HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHH
Q 013696          133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEV  202 (438)
Q Consensus       133 ~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~  202 (438)
                      +++|+..|++++.++|+++.+++.+|.++...|++++|...+.++++..|.++.+          .+++.+|...+.+++
T Consensus       209 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l  288 (899)
T TIGR02917       209 IELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDAL  288 (899)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988888888888877554          355667777777766


Q ss_pred             hhchh
Q 013696          203 FQKAS  207 (438)
Q Consensus       203 ~~~~~  207 (438)
                      ...+.
T Consensus       289 ~~~~~  293 (899)
T TIGR02917       289 KSAPE  293 (899)
T ss_pred             HhCCC
Confidence            65543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=1.7e-11  Score=123.01  Aligned_cols=165  Identities=19%  Similarity=0.184  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhcc
Q 013696           21 DWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKK   99 (438)
Q Consensus        21 ~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~   99 (438)
                      .-+++|..+..+-+-.+         +-..+.--+|..| ..+++.-|...|.+++.+.|.++-.  ++.+|.+.|..+.
T Consensus       361 EhdQAmaaY~tAarl~~---------G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv--~~Elgvvay~~~~  429 (611)
T KOG1173|consen  361 EHDQAMAAYFTAARLMP---------GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLV--LHELGVVAYTYEE  429 (611)
T ss_pred             hHHHHHHHHHHHHHhcc---------CCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchh--hhhhhheeehHhh
Confidence            44555665555554443         1111222344445 6789999999999999999999988  7799999999999


Q ss_pred             HHHHHHHHHHHhccCCC--------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH
Q 013696          100 FKEAIDCYSRSIALSPT--------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI  171 (438)
Q Consensus       100 y~~Ai~~y~~al~~~p~--------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~  171 (438)
                      |.+|+.+|..++..-+.        ...+.|+|.+|.+++.|++|+.+|+++|.+.|.++.++..+|.+|..+|+++.|+
T Consensus       430 y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Ai  509 (611)
T KOG1173|consen  430 YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAI  509 (611)
T ss_pred             hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHH
Confidence            99999999999954322        4568999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696          172 EDSEFALRLEPQNQEIKKQLAEVKS  196 (438)
Q Consensus       172 ~~~~~al~l~P~~~~~~~~l~~a~~  196 (438)
                      ++|.++|.+.|+|.-+..-+..|++
T Consensus       510 d~fhKaL~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  510 DHFHKALALKPDNIFISELLKLAIE  534 (611)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHH
Confidence            9999999999999766555554443

>PLN02789 farnesyltranstransferase

Probab=99.32  E-value=1.7e-11  Score=120.27  Aligned_cols=177  Identities=11%  Similarity=0.059  Sum_probs=144.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCC-CccchHHHHHhhhcCCCCChhHHH
Q 013696            9 ALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYS-RNYDPVSHISSSLMNEESTPDATS   86 (438)
Q Consensus         9 ~~~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g-~~~eAi~~~~~al~~~p~~~~a~~   86 (438)
                      -.-++..+...+..++++...++.+...+...         ..+...+.++ .+| ++.+|+..+++++..+|++..+  
T Consensus        40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~y---------taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa--  108 (320)
T PLN02789         40 MDYFRAVYASDERSPRALDLTADVIRLNPGNY---------TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI--  108 (320)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH---------HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH--
Confidence            34455666667788888888888887664111         1221222223 455 5799999999999999999998  


Q ss_pred             HHHHHHHHHHhccH--HHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 013696           87 EKELGNECFKQKKF--KEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE  163 (438)
Q Consensus        87 ~~~~g~~~~~~g~y--~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~  163 (438)
                      |..+|.++.+.|.+  ++++.++.++++++|. ..+|.++|.++..+|+|++|+.+|.++|+++|.|..+|+.+|.++..
T Consensus       109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~  188 (320)
T PLN02789        109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR  188 (320)
T ss_pred             hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence            77999999888874  7889999999999999 99999999999999999999999999999999999999999999988


Q ss_pred             c---CCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696          164 L---GKL----KESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (438)
Q Consensus       164 l---g~~----~eA~~~~~~al~l~P~~~~~~~~l~~a~~  196 (438)
                      +   |.+    ++++.+..+++.++|+|..++..+.-+..
T Consensus       189 ~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~  228 (320)
T PLN02789        189 SPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFK  228 (320)
T ss_pred             ccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Confidence            7   434    47888889999999999999877666553

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=2.1e-11  Score=122.37  Aligned_cols=163  Identities=16%  Similarity=0.135  Sum_probs=140.7

Q ss_pred             cccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHH
Q 013696           45 SSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN  122 (438)
Q Consensus        45 ~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~  122 (438)
                      .|.....+...|.-| ..|++.+|..+|.++..++|....+  |...|..|...|..++|+.+|..|-++.|. ...+..
T Consensus       308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpa--Wl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY  385 (611)
T KOG1173|consen  308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPA--WLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY  385 (611)
T ss_pred             CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHH--HHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH
Confidence            344555566666666 7899999999999999999999888  669999999999999999999999999988 566667


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHhhcCCccHH-----------------------------------------HHHHHHHHH
Q 013696          123 RAMAYLKLRRFQEAEDDCTEALNLDDRYIK-----------------------------------------AYSRRATAR  161 (438)
Q Consensus       123 la~~~~~l~~~~eA~~~~~~al~l~p~~~~-----------------------------------------a~~~lg~a~  161 (438)
                      +|+-|..+++++.|..+|.+|+.+.|.++-                                         .+.++|.++
T Consensus       386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~  465 (611)
T KOG1173|consen  386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY  465 (611)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence            788888889999999999999888886531                                         256899999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhchhhh
Q 013696          162 KELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKT  209 (438)
Q Consensus       162 ~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~~~~  209 (438)
                      .++++|++|+.+|+++|.+.|.+...          .++++.|...|.+++.+++.+.
T Consensus       466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~  523 (611)
T KOG1173|consen  466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI  523 (611)
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence            99999999999999999999999876          7889999999999999987663

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=2.8e-11  Score=114.54  Aligned_cols=106  Identities=36%  Similarity=0.576  Sum_probs=97.7

Q ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC---CC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHH
Q 013696           82 PDATSEKELGNECFKQKKFKEAIDCYSRSIALS---PT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  156 (438)
Q Consensus        82 ~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~---p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~  156 (438)
                      ..|..++..||-||+.++|..|+.+|+++|...   |+  +.+|+|||.|.+.+|+|..|+.+|.+|+.++|.+.++|+|
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            457779999999999999999999999999974   55  8899999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          157 RATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       157 lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      -|.|+..+.++.+|..+++..+.++-....+
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~  189 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKA  189 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            9999999999999999999998887655444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.29  E-value=5.2e-11  Score=120.18  Aligned_cols=170  Identities=14%  Similarity=0.069  Sum_probs=136.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL   90 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~   90 (438)
                      +...+...++|++++......++..+....    ......+..+|..| ..|++++|+..|.+++..+|+...+  +..+
T Consensus       147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~l  220 (389)
T PRK11788        147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLR----VEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRA--SILL  220 (389)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH--HHHH
Confidence            344555667788877776665544321100    00011112344444 7899999999999999999987777  6699


Q ss_pred             HHHHHHhccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Q 013696           91 GNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK  168 (438)
Q Consensus        91 g~~~~~~g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~  168 (438)
                      |..+...|++++|+..|.+++..+|.  ..++..++.+|...|++++|+..+.+++..+|+...+ ..+|.++...|+++
T Consensus       221 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~  299 (389)
T PRK11788        221 GDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPE  299 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHH
Confidence            99999999999999999999999987  6778899999999999999999999999999987554 89999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHH
Q 013696          169 ESIEDSEFALRLEPQNQEIK  188 (438)
Q Consensus       169 eA~~~~~~al~l~P~~~~~~  188 (438)
                      +|+..|+++++.+|++....
T Consensus       300 ~A~~~l~~~l~~~P~~~~~~  319 (389)
T PRK11788        300 AAQALLREQLRRHPSLRGFH  319 (389)
T ss_pred             HHHHHHHHHHHhCcCHHHHH
Confidence            99999999999999987654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.29  E-value=3.4e-11  Score=113.19  Aligned_cols=133  Identities=17%  Similarity=0.123  Sum_probs=115.3

Q ss_pred             CCCCCcC-cCCCccchHHHHHhhhcCCCCChhH-HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHH
Q 013696           53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMA  126 (438)
Q Consensus        53 ~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~  126 (438)
                      ...|..| ..|++++|+..|++++..+|.++.. ..++.+|.+++..|++++|+..|.++++.+|+    ..+++.+|.+
T Consensus        37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~  116 (235)
T TIGR03302        37 YEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLS  116 (235)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHH
Confidence            3444444 8899999999999999999987642 24789999999999999999999999999997    3479999999


Q ss_pred             HHHh--------cCHHHHHHHHHHHhhcCCccHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696          127 YLKL--------RRFQEAEDDCTEALNLDDRYIKAY-----------------SRRATARKELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       127 ~~~l--------~~~~eA~~~~~~al~l~p~~~~a~-----------------~~lg~a~~~lg~~~eA~~~~~~al~l~  181 (438)
                      +...        |++++|+..|.+++..+|++..++                 +.+|..|...|++.+|+..|++++...
T Consensus       117 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~  196 (235)
T TIGR03302       117 NYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY  196 (235)
T ss_pred             HHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Confidence            9987        889999999999999999986442                 467888999999999999999999998


Q ss_pred             CCCH
Q 013696          182 PQNQ  185 (438)
Q Consensus       182 P~~~  185 (438)
                      |+.+
T Consensus       197 p~~~  200 (235)
T TIGR03302       197 PDTP  200 (235)
T ss_pred             CCCc
Confidence            8764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.28  E-value=1e-10  Score=125.38  Aligned_cols=131  Identities=8%  Similarity=-0.030  Sum_probs=121.3

Q ss_pred             CCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh
Q 013696           53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  130 (438)
Q Consensus        53 ~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l  130 (438)
                      ..++..- ..|.+++|...++.++++.|++..+  ..+++.++.+.+++++|+..+++++..+|+ +.+++.+|.++..+
T Consensus        90 ~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a--~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~  167 (694)
T PRK15179         90 VLVARALEAAHRSDEGLAVWRGIHQRFPDSSEA--FILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEI  167 (694)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHH--HHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Confidence            3344443 7899999999999999999999999  559999999999999999999999999999 99999999999999


Q ss_pred             cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696          131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       131 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~  185 (438)
                      |+|++|+..|++++..+|+++.++..+|.++...|+.++|...|++++.+..+-.
T Consensus       168 g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~  222 (694)
T PRK15179        168 GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA  222 (694)
T ss_pred             cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence            9999999999999999999999999999999999999999999999999885543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.27  E-value=3.5e-11  Score=121.30  Aligned_cols=156  Identities=14%  Similarity=0.100  Sum_probs=134.8

Q ss_pred             ccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----------
Q 013696           48 LKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------  116 (438)
Q Consensus        48 ~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----------  116 (438)
                      ...++..+|... ..++-..||..+.+|++++|++.++  +..+|..|...|.-.+|+.++.+-|...|.          
T Consensus       318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nlea--LmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~  395 (579)
T KOG1125|consen  318 HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEA--LMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGEN  395 (579)
T ss_pred             HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHH--HHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcc
Confidence            344667777776 7778888999999999999999999  669999999999888888888777644321          


Q ss_pred             ----------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 013696          117 ----------------------------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (438)
Q Consensus       117 ----------------------------------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~  162 (438)
                                                        +.++..||..|...|+|+.|+.+|+.||+.+|++...|.++|.++.
T Consensus       396 ~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA  475 (579)
T KOG1125|consen  396 EDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA  475 (579)
T ss_pred             ccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence                                              4667779999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhc
Q 013696          163 ELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       163 ~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~  205 (438)
                      .-.+..+|+..|++||+|.|+...+          ++.|.+|..+|-.++.+.
T Consensus       476 N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq  528 (579)
T KOG1125|consen  476 NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ  528 (579)
T ss_pred             CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence            9999999999999999999988665          788888888888888766

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.26  E-value=6.2e-11  Score=111.42  Aligned_cols=163  Identities=15%  Similarity=0.061  Sum_probs=128.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhH-HHHHHHH
Q 013696           14 GFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDA-TSEKELG   91 (438)
Q Consensus        14 ~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a-~~~~~~g   91 (438)
                      ..+-..++|++++....+.+...+...      .....+..+|.+| ..|++++|+..|++++...|+++.+ ..++.+|
T Consensus        41 ~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g  114 (235)
T TIGR03302        41 KEALDSGDYTEAIKYFEALESRYPFSP------YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRG  114 (235)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCch------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHH
Confidence            334456788888888888776554111      1111234456666 8899999999999999999987762 2377999


Q ss_pred             HHHHHh--------ccHHHHHHHHHHHhccCCC-HH---H--------------HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696           92 NECFKQ--------KKFKEAIDCYSRSIALSPT-AV---A--------------YANRAMAYLKLRRFQEAEDDCTEALN  145 (438)
Q Consensus        92 ~~~~~~--------g~y~~Ai~~y~~al~~~p~-~~---~--------------~~~la~~~~~l~~~~eA~~~~~~al~  145 (438)
                      .+++..        |++++|+..|.+++..+|+ ..   +              ...+|.+|+..|++.+|+..|++++.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~  194 (235)
T TIGR03302       115 LSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVE  194 (235)
T ss_pred             HHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            999987        8999999999999999998 22   1              24678999999999999999999999


Q ss_pred             cCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696          146 LDDR---YIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (438)
Q Consensus       146 l~p~---~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P  182 (438)
                      ..|+   .+.+++++|.++..+|++++|..+++....-.|
T Consensus       195 ~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       195 NYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            9765   468999999999999999999998877665444

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.26  E-value=1.6e-10  Score=103.50  Aligned_cols=104  Identities=18%  Similarity=0.191  Sum_probs=89.2

Q ss_pred             HHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 013696           71 ISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNL  146 (438)
Q Consensus        71 ~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l  146 (438)
                      +...+..+++...+..++.+|..+...|+|++|+.+|.+++.+.|+    ..++.++|.+|..+|++++|+..+.+++.+
T Consensus        22 ~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  101 (172)
T PRK02603         22 ILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL  101 (172)
T ss_pred             HHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3444555555566767899999999999999999999999998765    578999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 013696          147 DDRYIKAYSRRATARKELGKLKESIEDS  174 (438)
Q Consensus       147 ~p~~~~a~~~lg~a~~~lg~~~eA~~~~  174 (438)
                      .|+++.++..+|.++..+|+...|...+
T Consensus       102 ~p~~~~~~~~lg~~~~~~g~~~~a~~~~  129 (172)
T PRK02603        102 NPKQPSALNNIAVIYHKRGEKAEEAGDQ  129 (172)
T ss_pred             CcccHHHHHHHHHHHHHcCChHhHhhCH
Confidence            9999999999999999999854444333

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.26  E-value=1.7e-10  Score=102.99  Aligned_cols=127  Identities=16%  Similarity=0.070  Sum_probs=106.1

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ  134 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~  134 (438)
                      |-...|..+...+...++..+....+..+..+|.++...|+|++|+.+|.+++.+.|+    +.+|.++|.+|...|+++
T Consensus        10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~   89 (168)
T CHL00033         10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT   89 (168)
T ss_pred             ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence            3444577777778777777777777888999999999999999999999999998765    568999999999999999


Q ss_pred             HHHHHHHHHhhcCCccHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCCH
Q 013696          135 EAEDDCTEALNLDDRYIKAYSRRATARK-------ELGKLK-------ESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       135 eA~~~~~~al~l~p~~~~a~~~lg~a~~-------~lg~~~-------eA~~~~~~al~l~P~~~  185 (438)
                      +|+..|.+++.++|.+..++.++|.++.       .+|+++       +|+..|++++.++|.+.
T Consensus        90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            9999999999999999999999999999       666766       55555556666666554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.23  E-value=3.9e-11  Score=116.04  Aligned_cols=139  Identities=17%  Similarity=0.135  Sum_probs=105.9

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..++++++...+.++....+.......|..+|.++.+.|++++|+.+|+++++++|+ ..+...++.++...|+++++..
T Consensus       122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~  201 (280)
T PF13429_consen  122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEARE  201 (280)
T ss_dssp             HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence            668888888888886654422223334778899999999999999999999999998 8888888888888899988888


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (438)
                      .+.......|+++..|..+|.++..+|++++|+.+|+++++.+|+++.....+..++...
T Consensus       202 ~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~  261 (280)
T PF13429_consen  202 ALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQA  261 (280)
T ss_dssp             HHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccc
Confidence            888888777888888888999999999999999999999999999988876666665533

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.22  E-value=4.2e-11  Score=90.16  Aligned_cols=66  Identities=35%  Similarity=0.473  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 013696          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG-KLKESIEDSEFALRLEP  182 (438)
Q Consensus       117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg-~~~eA~~~~~~al~l~P  182 (438)
                      +.+|.++|.+++..|+|++|+.+|++++.++|+++.+|+++|.++..+| ++.+|+.+++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4567777777777777777777777777777777777777777777777 57777777777777776

...

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.21  E-value=2.2e-10  Score=122.84  Aligned_cols=132  Identities=8%  Similarity=0.011  Sum_probs=120.9

Q ss_pred             hcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHH
Q 013696           75 LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKA  153 (438)
Q Consensus        75 l~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a  153 (438)
                      ....|+...+  +..+|.+....|.|++|...+..++++.|+ ..++.+++.++.+++++++|+..+++++..+|+++.+
T Consensus        79 ~~~~~~~~~~--~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~  156 (694)
T PRK15179         79 VRRYPHTELF--QVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE  156 (694)
T ss_pred             HHhccccHHH--HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH
Confidence            3456666677  779999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhchhh
Q 013696          154 YSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASK  208 (438)
Q Consensus       154 ~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~~~  208 (438)
                      ++.+|.++..+|+|++|+..|++++..+|+++.+          .++.++|...|++++......
T Consensus       157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~  221 (694)
T PRK15179        157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG  221 (694)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence            9999999999999999999999999999998876          477888999999998776543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.21  E-value=4.8e-11  Score=113.35  Aligned_cols=149  Identities=18%  Similarity=0.234  Sum_probs=127.2

Q ss_pred             CCCCCc-CcCCCccchHHHHHhhhcCCCCChhHHHH----------HHHHHHHHHhccHHHHHHHHHHHhccCCC-H---
Q 013696           53 KPSPSG-NSYSRNYDPVSHISSSLMNEESTPDATSE----------KELGNECFKQKKFKEAIDCYSRSIALSPT-A---  117 (438)
Q Consensus        53 ~~~~~~-y~~g~~~eAi~~~~~al~~~p~~~~a~~~----------~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~---  117 (438)
                      ..++.. |..|+...++...+.+|+++|+......+          ..-+......++|.++++.+++.++-+|. +   
T Consensus       227 ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir  306 (504)
T KOG0624|consen  227 YKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR  306 (504)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccccee
Confidence            344444 58899999999999999999998665432          22344566789999999999999999998 3   


Q ss_pred             -HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696          118 -VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (438)
Q Consensus       118 -~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  196 (438)
                       ..+..+..||..-+++.+|++.|.+++.++|+++.++..+|.+|..-..|+.|+.+|++|+.++++|..+...++.|.+
T Consensus       307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akr  386 (504)
T KOG0624|consen  307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKR  386 (504)
T ss_pred             eeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence             3345567899999999999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             HHHHH
Q 013696          197 LYEKE  201 (438)
Q Consensus       197 ~~~ka  201 (438)
                      +..++
T Consensus       387 lkkqs  391 (504)
T KOG0624|consen  387 LKKQS  391 (504)
T ss_pred             HHHHh
Confidence            76543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.21  E-value=7.8e-11  Score=117.79  Aligned_cols=105  Identities=16%  Similarity=0.177  Sum_probs=99.0

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~  137 (438)
                      |..|+|++|+.+|.+++.++|++..+  +..+|.+|...|+|++|+.++.+++.++|. +.+|+++|.+|+.+|+|++|+
T Consensus        13 ~~~~~~~~Ai~~~~~Al~~~P~~~~a--~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~   90 (356)
T PLN03088         13 FVDDDFALAVDLYTQAIDLDPNNAEL--YADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK   90 (356)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence            57899999999999999999999888  679999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARKELG  165 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg  165 (438)
                      .+|++++.++|++..+...++.+...+.
T Consensus        91 ~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         91 AALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999988888876663

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.21  E-value=3.7e-10  Score=93.70  Aligned_cols=102  Identities=14%  Similarity=0.147  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc---HHHHHHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRAT  159 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~---~~a~~~lg~  159 (438)
                      ++.+|..++..|+|++|+..|.+++..+|+    +.+++.+|.++...|++++|+..|..++..+|++   +.+++.+|.
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            679999999999999999999999999886    5789999999999999999999999999998885   678999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696          160 ARKELGKLKESIEDSEFALRLEPQNQEIK  188 (438)
Q Consensus       160 a~~~lg~~~eA~~~~~~al~l~P~~~~~~  188 (438)
                      ++..+|++++|+..+++++...|++..+.
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence            99999999999999999999999987653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1e-10  Score=113.65  Aligned_cols=145  Identities=23%  Similarity=0.279  Sum_probs=129.6

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------------HHHHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------AVAYANRAMA  126 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------------~~~~~~la~~  126 (438)
                      -+|++++|+..-...+++++.+.++  ++..|.+++-.++.+.|+.+|++++.++|+             -..+...|.-
T Consensus       181 ~~~~~~~a~~ea~~ilkld~~n~~a--l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~  258 (486)
T KOG0550|consen  181 FLGDYDEAQSEAIDILKLDATNAEA--LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGND  258 (486)
T ss_pred             hcccchhHHHHHHHHHhcccchhHH--HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhh
Confidence            6799999999999999999999888  779999999999999999999999999998             1456778999


Q ss_pred             HHHhcCHHHHHHHHHHHhhcCCcc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHH
Q 013696          127 YLKLRRFQEAEDDCTEALNLDDRY----IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLA  192 (438)
Q Consensus       127 ~~~l~~~~eA~~~~~~al~l~p~~----~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~  192 (438)
                      .++.|+|..|.+.|+.+|.++|++    ++.|.++|.++..+|+..+|+.+++.++.|+|....+          ++.++
T Consensus       259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e  338 (486)
T KOG0550|consen  259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE  338 (486)
T ss_pred             HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999986    5679999999999999999999999999999987665          66777


Q ss_pred             HHHHHHHHHHhhch
Q 013696          193 EVKSLYEKEVFQKA  206 (438)
Q Consensus       193 ~a~~~~~ka~~~~~  206 (438)
                      +|.+.|++++.+..
T Consensus       339 ~AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  339 EAVEDYEKAMQLEK  352 (486)
T ss_pred             HHHHHHHHHHhhcc
Confidence            77777777766553

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.20  E-value=6.1e-11  Score=119.56  Aligned_cols=118  Identities=19%  Similarity=0.255  Sum_probs=107.1

Q ss_pred             ccchHHHHHhhhcCCC--CChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHH
Q 013696           64 NYDPVSHISSSLMNEE--STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC  140 (438)
Q Consensus        64 ~~eAi~~~~~al~~~p--~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~  140 (438)
                      +..-.+.|-.+-...|  .+++.  +..+|..|+-.|+|+.|+.||+.||..+|+ ..+|..+|..+..-.+.++|+..|
T Consensus       410 l~~i~~~fLeaa~~~~~~~Dpdv--Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY  487 (579)
T KOG1125|consen  410 LAHIQELFLEAARQLPTKIDPDV--QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAY  487 (579)
T ss_pred             HHHHHHHHHHHHHhCCCCCChhH--HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence            4444566667766777  44555  569999999999999999999999999999 999999999999999999999999


Q ss_pred             HHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696          141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       141 ~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~  183 (438)
                      .+|+++.|.++.++|++|.++..+|.|++|+.+|-.||.+.+.
T Consensus       488 ~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  488 NRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             HHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999999876

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.20  E-value=2.8e-10  Score=88.33  Aligned_cols=97  Identities=40%  Similarity=0.591  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg  165 (438)
                      ++.+|..++..|++++|+..+.++++..|. ..++..+|.++...+++++|+.+|.+++.+.|.+..+++.+|.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            678999999999999999999999999998 7889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCC
Q 013696          166 KLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       166 ~~~eA~~~~~~al~l~P~  183 (438)
                      ++++|...+.+++.++|.
T Consensus        83 ~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          83 KYEEALEAYEKALELDPN  100 (100)
T ss_pred             hHHHHHHHHHHHHccCCC
Confidence            999999999999998874

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=9e-11  Score=106.55  Aligned_cols=99  Identities=39%  Similarity=0.599  Sum_probs=94.2

Q ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 013696           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (438)
Q Consensus        83 ~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~  161 (438)
                      .+..++..|+.||.-++|..||.+|.++|.++|. +..|.|++.||+++++|+.+..+|.+|++++|+.+++++.+|.+.
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~   88 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL   88 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence            3555789999999999999999999999999999 899999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhC
Q 013696          162 KELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       162 ~~lg~~~eA~~~~~~al~l~  181 (438)
                      .....|++|+..+.++..+.
T Consensus        89 l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   89 LQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             HhhccccHHHHHHHHHHHHH
Confidence            99999999999999997664

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.18  E-value=3.8e-11  Score=113.40  Aligned_cols=145  Identities=12%  Similarity=0.093  Sum_probs=126.8

Q ss_pred             ccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHH
Q 013696           46 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR  123 (438)
Q Consensus        46 ~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~l  123 (438)
                      |.+...+.+++..| .++++++|.++|..+++.+|.+.++.+  -+|..||-.++.+-|+.+|++.+++.-. +..+.|+
T Consensus       287 P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiA--cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Ni  364 (478)
T KOG1129|consen  287 PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIA--CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNI  364 (478)
T ss_pred             CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeee--eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhH
Confidence            33444445556667 789999999999999999999999866  8899999999999999999999999877 9999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHhhcCC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013696          124 AMAYLKLRRFQEAEDDCTEALNLDD---RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA  192 (438)
Q Consensus       124 a~~~~~l~~~~eA~~~~~~al~l~p---~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  192 (438)
                      |.|.+..++++-++-.|.+|+...-   .-.+.||++|.+....|++.-|..+|+-+|.-+|++.++..++.
T Consensus       365 gLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLa  436 (478)
T KOG1129|consen  365 GLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLA  436 (478)
T ss_pred             HHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHH
Confidence            9999999999999999999998754   33678999999999999999999999999999999998865543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.17  E-value=3.6e-10  Score=103.62  Aligned_cols=110  Identities=19%  Similarity=0.211  Sum_probs=101.0

Q ss_pred             hccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHH-HHcCC--HHHHHH
Q 013696           97 QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR-KELGK--LKESIE  172 (438)
Q Consensus        97 ~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~-~~lg~--~~eA~~  172 (438)
                      .++.++++..+.+++..+|+ ..+|..+|.+|..+|++++|+..|.+++.++|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            67789999999999999999 999999999999999999999999999999999999999999985 67788  599999


Q ss_pred             HHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhch
Q 013696          173 DSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKA  206 (438)
Q Consensus       173 ~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~  206 (438)
                      .++++++++|++..+          .+++.+|...|++++.+.+
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~  175 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS  175 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            999999999999887          4677888888888887763

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.17  E-value=2.9e-10  Score=107.52  Aligned_cols=164  Identities=14%  Similarity=0.119  Sum_probs=143.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHH
Q 013696           13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELG   91 (438)
Q Consensus        13 ~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g   91 (438)
                      .-+..++++.+.+++.+...++..+-+++         ++.-++..| .-++.+-|+.+|++.|.+.-.+++.  +.++|
T Consensus       297 ARi~eam~~~~~a~~lYk~vlk~~~~nvE---------aiAcia~~yfY~~~PE~AlryYRRiLqmG~~speL--f~Nig  365 (478)
T KOG1129|consen  297 ARIHEAMEQQEDALQLYKLVLKLHPINVE---------AIACIAVGYFYDNNPEMALRYYRRILQMGAQSPEL--FCNIG  365 (478)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCccce---------eeeeeeeccccCCChHHHHHHHHHHHHhcCCChHH--HhhHH
Confidence            44566777888888888887776653332         445566666 7788999999999999999888888  77999


Q ss_pred             HHHHHhccHHHHHHHHHHHhccC--CC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Q 013696           92 NECFKQKKFKEAIDCYSRSIALS--PT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL  167 (438)
Q Consensus        92 ~~~~~~g~y~~Ai~~y~~al~~~--p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~  167 (438)
                      .|++-.++|+-++.+|.+++...  |.  +.+|+|+|.+....|++..|..+|+-|+..|+++..++.++|..-...|+.
T Consensus       366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i  445 (478)
T KOG1129|consen  366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI  445 (478)
T ss_pred             HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence            99999999999999999999975  44  899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHH
Q 013696          168 KESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       168 ~eA~~~~~~al~l~P~~~~~  187 (438)
                      .+|...++.|-.+.|+-.+.
T Consensus       446 ~~Arsll~~A~s~~P~m~E~  465 (478)
T KOG1129|consen  446 LGARSLLNAAKSVMPDMAEV  465 (478)
T ss_pred             HHHHHHHHHhhhhCcccccc
Confidence            99999999999999986554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.14  E-value=1.9e-10  Score=86.50  Aligned_cols=65  Identities=40%  Similarity=0.647  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc-CHHHHHHHHHHHhhcCC
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-RFQEAEDDCTEALNLDD  148 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~-~~~eA~~~~~~al~l~p  148 (438)
                      +..|..+|.+++..|+|++|+.+|.++++++|+ +.+|+++|.||..+| ++++|+.+++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            344889999999999999999999999999999 999999999999999 79999999999999998

...

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.14  E-value=1e-09  Score=120.63  Aligned_cols=132  Identities=10%  Similarity=0.112  Sum_probs=113.5

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      -.|++++|+..+.++...+|....+  +..+|.++...|++++|+.+|+++++++|. +.++..+|.++...|++++|+.
T Consensus        27 ~~g~~~~A~~~~~~~~~~~~~~a~~--~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~  104 (765)
T PRK10049         27 WAGQDAEVITVYNRYRVHMQLPARG--YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALV  104 (765)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            5688889999998888777766666  568899999999999999999999999988 8888899999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a  194 (438)
                      .+++++..+|+++. ++.+|.++...|++++|+..|++++.++|++..+...+..+
T Consensus       105 ~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~  159 (765)
T PRK10049        105 KAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQA  159 (765)
T ss_pred             HHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999988 88999999999999999999999999999988875554443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.13  E-value=7.6e-10  Score=121.59  Aligned_cols=185  Identities=12%  Similarity=0.062  Sum_probs=136.1

Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChh--HHHHHHHHHHH
Q 013696           18 DLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNEC   94 (438)
Q Consensus        18 ~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~--a~~~~~~g~~~   94 (438)
                      ..+++.+++..+...++..+ ..     +...  ....+..| ..|++++|+..|++++..+|....  ......++..+
T Consensus       249 ~~g~~~eA~~~~~~ll~~~~-~~-----P~~a--~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~  320 (765)
T PRK10049        249 ARDRYKDVISEYQRLKAEGQ-II-----PPWA--QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL  320 (765)
T ss_pred             HhhhHHHHHHHHHHhhccCC-CC-----CHHH--HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence            44677888877777554421 10     1000  01124455 788888899888888887776521  12244677778


Q ss_pred             HHhccHHHHHHHHHHHhccCCC----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 013696           95 FKQKKFKEAIDCYSRSIALSPT----------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA  158 (438)
Q Consensus        95 ~~~g~y~~Ai~~y~~al~~~p~----------------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg  158 (438)
                      ...|++++|+..+.++....|.                ..++..+|.++...|++++|+..+++++...|+++.+++.+|
T Consensus       321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA  400 (765)
T PRK10049        321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYA  400 (765)
T ss_pred             HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            8888899888888888887662                346778888888888888998888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhchhhhh
Q 013696          159 TARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTL  210 (438)
Q Consensus       159 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~~~~~  210 (438)
                      .++...|++++|+..+++++.++|++..+          .+++.+|...+++.+...+..+.
T Consensus       401 ~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~  462 (765)
T PRK10049        401 SVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG  462 (765)
T ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence            88888888889999999888888888554          56777888888888777765544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.09  E-value=6.8e-10  Score=96.14  Aligned_cols=89  Identities=18%  Similarity=0.103  Sum_probs=84.7

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~  137 (438)
                      |..|++++|...|+-+..++|.+...  |+++|.++-..|+|.+||.+|.+++.++|+ +.++++.|.||+.+|+.+.|.
T Consensus        46 y~~G~l~~A~~~f~~L~~~Dp~~~~y--~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~  123 (157)
T PRK15363         46 MEVKEFAGAARLFQLLTIYDAWSFDY--WFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAI  123 (157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence            38899999999999999999998888  889999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHhhcCCc
Q 013696          138 DDCTEALNLDDR  149 (438)
Q Consensus       138 ~~~~~al~l~p~  149 (438)
                      ..|+.||.+...
T Consensus       124 ~aF~~Ai~~~~~  135 (157)
T PRK15363        124 KALKAVVRICGE  135 (157)
T ss_pred             HHHHHHHHHhcc
Confidence            999999988643

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.08  E-value=5.5e-10  Score=107.96  Aligned_cols=155  Identities=17%  Similarity=0.134  Sum_probs=91.7

Q ss_pred             CCCCCcCcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC--CC-HHHHHHHHHHHHH
Q 013696           53 KPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--PT-AVAYANRAMAYLK  129 (438)
Q Consensus        53 ~~~~~~y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~--p~-~~~~~~la~~~~~  129 (438)
                      .+++..+..+++++|+..+.+++...+ ++..  +......+...|+++++...+.++....  +. +..|..+|.++.+
T Consensus        82 ~~l~~l~~~~~~~~A~~~~~~~~~~~~-~~~~--l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~  158 (280)
T PF13429_consen   82 ERLIQLLQDGDPEEALKLAEKAYERDG-DPRY--LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ  158 (280)
T ss_dssp             ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccc-ccch--hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence            334433567888888888888776553 3333  4466777888899999999988877654  33 7888889999999


Q ss_pred             hcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHH
Q 013696          130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYE  199 (438)
Q Consensus       130 l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~  199 (438)
                      .|++++|+.+|++++.++|++..+...++.++...|+++++...+.......|.++..          .++..+|+..|+
T Consensus       159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~  238 (280)
T PF13429_consen  159 LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE  238 (280)
T ss_dssp             CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence            9999999999999999999999999999999999999998888888877777666544          577788888888


Q ss_pred             HHHhhchhhhh
Q 013696          200 KEVFQKASKTL  210 (438)
Q Consensus       200 ka~~~~~~~~~  210 (438)
                      +++..++.++.
T Consensus       239 ~~~~~~p~d~~  249 (280)
T PF13429_consen  239 KALKLNPDDPL  249 (280)
T ss_dssp             HHHHHSTT-HH
T ss_pred             ccccccccccc
Confidence            88777665443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.07  E-value=3.2e-09  Score=105.69  Aligned_cols=138  Identities=20%  Similarity=0.141  Sum_probs=125.4

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~  137 (438)
                      |..|++++|...++..+...|+++....  ..|.+++..+++.+|++.+.+++.++|+ ...+.++|.+|++.|++.+|+
T Consensus       317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~--~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai  394 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAAQPDNPYYLE--LAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI  394 (484)
T ss_pred             HHhcccchHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence            3779999999999999999999998844  8899999999999999999999999999 899999999999999999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (438)
                      ..+...+.-+|+++..|..+|.+|..+|+-.+|...+-..+.+......+...+..|.+.+
T Consensus       395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999988887666666655555543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.07  E-value=2.2e-10  Score=113.88  Aligned_cols=115  Identities=38%  Similarity=0.599  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 013696           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL  164 (438)
Q Consensus        86 ~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l  164 (438)
                      .++..|+.+++.+.|+.|+..|.++|+++|+ +..+.+++.++++.++|..|+.++.+||+++|.+.++|+++|.++..+
T Consensus         6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l   85 (476)
T KOG0376|consen    6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL   85 (476)
T ss_pred             hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence            3668899999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013696          165 GKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (438)
Q Consensus       165 g~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~k  200 (438)
                      +++.+|+.+|+....+.|+++.+...+.++..+..+
T Consensus        86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE  121 (476)
T ss_pred             HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998888888776554

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.06  E-value=2e-09  Score=102.49  Aligned_cols=117  Identities=25%  Similarity=0.392  Sum_probs=105.3

Q ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 013696           82 PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA  160 (438)
Q Consensus        82 ~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a  160 (438)
                      .++..+..+|..++..|++.+|+..|..|++.+|+ ..+++.+|.+|+.+|+-..|+.+++++|++.|+...|...+|.+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v  115 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence            44555889999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHH
Q 013696          161 RKELGKLKESIEDSEFALRLEPQNQ---EIKKQLAEVKSLY  198 (438)
Q Consensus       161 ~~~lg~~~eA~~~~~~al~l~P~~~---~~~~~l~~a~~~~  198 (438)
                      +.++|.+++|..+|+.+|..+|++.   +++..+..+.+.+
T Consensus       116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~  156 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHW  156 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHH
Confidence            9999999999999999999999664   4444554444443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=3.9e-09  Score=99.85  Aligned_cols=130  Identities=18%  Similarity=0.172  Sum_probs=115.2

Q ss_pred             CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc---CHHHHH
Q 013696           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEAE  137 (438)
Q Consensus        62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~---~~~eA~  137 (438)
                      ...+.-+..++..|..+|++.+.  |..+|.+|+..|++..|...|.+++++.|+ +..+..+|.++....   .-.++.
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~eg--W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~  213 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEG--WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR  213 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence            34566777888889999999998  779999999999999999999999999998 999999998877765   467899


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE  193 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~  193 (438)
                      ..+++++.+||.++.+.+.+|..++..|+|.+|+..++..|.+.|.+..-...++.
T Consensus       214 ~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~  269 (287)
T COG4235         214 ALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER  269 (287)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence            99999999999999999999999999999999999999999999988655444433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.06  E-value=5.8e-09  Score=96.46  Aligned_cols=135  Identities=18%  Similarity=0.156  Sum_probs=122.3

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..|+-+.+.....++....|.+...  +..+|...+..|+|..|+..++++..+.|+ +.+|..+|.+|.+.|++++|..
T Consensus        78 ~~G~a~~~l~~~~~~~~~~~~d~~l--l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~  155 (257)
T COG5010          78 LRGDADSSLAVLQKSAIAYPKDREL--LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARR  155 (257)
T ss_pred             hcccccchHHHHhhhhccCcccHHH--HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHH
Confidence            6677788888888888778877777  557999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  196 (438)
                      .|.+++++.|..+.++.++|..|.-.|+++.|...+..+...-+.+..+..++.-+..
T Consensus       156 ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~  213 (257)
T COG5010         156 AYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVG  213 (257)
T ss_pred             HHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999988888888776665544

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.05  E-value=1.1e-09  Score=113.00  Aligned_cols=189  Identities=19%  Similarity=0.160  Sum_probs=146.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL   90 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~   90 (438)
                      .-.++..++.|..-|-.+...=+.......+.    ...........| ..||+-.--.+|++++.+. +...+.+.+.+
T Consensus       417 Al~I~Erlemw~~vi~CY~~lg~~~kaeei~~----q~lek~~d~~lyc~LGDv~~d~s~yEkawEls-n~~sarA~r~~  491 (777)
T KOG1128|consen  417 ALVIFERLEMWDPVILCYLLLGQHGKAEEINR----QELEKDPDPRLYCLLGDVLHDPSLYEKAWELS-NYISARAQRSL  491 (777)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhcccchHHHHHH----HHhcCCCcchhHHHhhhhccChHHHHHHHHHh-hhhhHHHHHhh
Confidence            34677888999887664322111110000000    000012233446 6788888888999999877 44555556788


Q ss_pred             HHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Q 013696           91 GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE  169 (438)
Q Consensus        91 g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~e  169 (438)
                      |...+..++|++|..+++.+++++|- ...|+++|.|.++++++..|..+|.+++.++|++..+|.+++.+|..+|+-.+
T Consensus       492 ~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~r  571 (777)
T KOG1128|consen  492 ALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKR  571 (777)
T ss_pred             ccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHH
Confidence            88889999999999999999999998 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhc
Q 013696          170 SIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       170 A~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~  205 (438)
                      |...+.+|++-+-.+...          .++.++|+..|.+.+..+
T Consensus       572 a~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  572 AFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             HHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            999999999999666554          467788888888766654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.05  E-value=5.7e-09  Score=110.75  Aligned_cols=137  Identities=18%  Similarity=0.132  Sum_probs=115.4

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCCChhHHH-----------------------------------HHHHHHHHHHhc
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATS-----------------------------------EKELGNECFKQK   98 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~-----------------------------------~~~~g~~~~~~g   98 (438)
                      +|-+| .+|+.+.|+..+.++++++|.+..+..                                   +..+++-||-.|
T Consensus       205 ig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~  284 (1018)
T KOG2002|consen  205 IGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKK  284 (1018)
T ss_pred             hhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcc
Confidence            33344 778888888888888888876533211                                   567888888899


Q ss_pred             cHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHH
Q 013696           99 KFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-IKAYSRRATARKELGKLKESIED  173 (438)
Q Consensus        99 ~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~-~~a~~~lg~a~~~lg~~~eA~~~  173 (438)
                      +|..+...+..++...-.    +..+|++|.+|..+|+|++|..+|.++++.++++ .-+++++|..|...|+++.|+.+
T Consensus       285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~  364 (1018)
T KOG2002|consen  285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC  364 (1018)
T ss_pred             cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH
Confidence            999999999888886633    6779999999999999999999999999999998 88999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHH
Q 013696          174 SEFALRLEPQNQEIKKQL  191 (438)
Q Consensus       174 ~~~al~l~P~~~~~~~~l  191 (438)
                      |++++..+|++.+...-+
T Consensus       365 fEkv~k~~p~~~etm~iL  382 (1018)
T KOG2002|consen  365 FEKVLKQLPNNYETMKIL  382 (1018)
T ss_pred             HHHHHHhCcchHHHHHHH
Confidence            999999999998874333

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.04  E-value=2e-09  Score=91.91  Aligned_cols=103  Identities=13%  Similarity=0.072  Sum_probs=91.9

Q ss_pred             HHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696          105 DCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       105 ~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~  183 (438)
                      ..|.+++.++|. ..+.+.+|.+++..|++++|+..+++++.++|.++.+|+++|.++..+|++++|+.+|++++.++|.
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            468899999998 8889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHH----------HHHHHHHHHHHHHHHhhchh
Q 013696          184 NQEI----------KKQLAEVKSLYEKEVFQKAS  207 (438)
Q Consensus       184 ~~~~----------~~~l~~a~~~~~ka~~~~~~  207 (438)
                      ++..          .+++.+|...|++++...+.
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  117 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGE  117 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            9776          45566677777777666543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.03  E-value=6e-10  Score=87.44  Aligned_cols=80  Identities=29%  Similarity=0.363  Sum_probs=65.7

Q ss_pred             hccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Q 013696           97 QKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED  173 (438)
Q Consensus        97 ~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~  173 (438)
                      +|+|+.|+..|+++++.+|.   ...++++|.||+.+|+|++|+..+++ +..++.++...+.+|.++..+|+|++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            57888888888888888883   56677788899889999988888888 778888888888888889999999998888


Q ss_pred             HHHH
Q 013696          174 SEFA  177 (438)
Q Consensus       174 ~~~a  177 (438)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            8765

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.03  E-value=1.2e-09  Score=81.17  Aligned_cols=64  Identities=25%  Similarity=0.258  Sum_probs=50.5

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696          122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       122 ~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~  185 (438)
                      .+|..++..|+|++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|++++.++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5677888888888888888888888888888888888888888888888888888888888764

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=2.6e-09  Score=97.45  Aligned_cols=103  Identities=28%  Similarity=0.378  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhcc--------CCC-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696           85 TSEKELGNECFKQKKFKEAIDCYSRSIAL--------SPT-----------AVAYANRAMAYLKLRRFQEAEDDCTEALN  145 (438)
Q Consensus        85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~--------~p~-----------~~~~~~la~~~~~l~~~~eA~~~~~~al~  145 (438)
                      ..+...||-+|+.|+|.+|..+|..|+..        .|.           ..++.|.+.|++..|+|-++++.|...+.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            33789999999999999999999999864        233           35789999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       146 l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      .+|+|++|||++|.++...=+..+|..+|.++|+++|.-..+
T Consensus       259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            999999999999999999999999999999999999986554

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.01  E-value=1.4e-08  Score=93.40  Aligned_cols=123  Identities=21%  Similarity=0.103  Sum_probs=64.5

Q ss_pred             CCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHH
Q 013696           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD  139 (438)
Q Consensus        61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~  139 (438)
                      .|.+++|+++|+..|..+|.+...  ++..-.+.-.+|+--+||+.....++.++. ..+|..++.+|+..|+|+.|.-+
T Consensus        99 ~~~~~~A~e~y~~lL~ddpt~~v~--~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fC  176 (289)
T KOG3060|consen   99 TGNYKEAIEYYESLLEDDPTDTVI--RKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFC  176 (289)
T ss_pred             hhchhhHHHHHHHHhccCcchhHH--HHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence            355555555555555555544444  223333444445555555555555555554 55555555555555555555555


Q ss_pred             HHHHhhcCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCH
Q 013696          140 CTEALNLDDRYIKAYSRRATARKELG---KLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       140 ~~~al~l~p~~~~a~~~lg~a~~~lg---~~~eA~~~~~~al~l~P~~~  185 (438)
                      ++..+-+.|.++-.+.++|.+++-+|   ++.-|..+|.++++++|.+.
T Consensus       177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~  225 (289)
T KOG3060|consen  177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL  225 (289)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence            55555555555555555555555443   34455555555555555443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.00  E-value=6.2e-09  Score=113.73  Aligned_cols=149  Identities=12%  Similarity=0.049  Sum_probs=114.4

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~  137 (438)
                      |+.|++..|+..|.+++..+|.++.+..  .+..++...|++++|+.++++++.-.|. ...+..+|.+|..+|+|++|+
T Consensus        45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~--dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai  122 (822)
T PRK14574         45 ARAGDTAPVLDYLQEESKAGPLQSGQVD--DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL  122 (822)
T ss_pred             HhCCCHHHHHHHHHHHHhhCccchhhHH--HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            3778888999999999988888754422  7777777888888888888888832232 555555677888888888888


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH------H---HHHHHHHHHHHHHHhhchhh
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI------K---KQLAEVKSLYEKEVFQKASK  208 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~------~---~~l~~a~~~~~ka~~~~~~~  208 (438)
                      ..|++++..+|+++.+++.++.++...|++++|+..+++++..+|.+...      .   +...+|+..|++++...+.+
T Consensus       123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n  202 (822)
T PRK14574        123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS  202 (822)
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence            88888888888888888888888888888888888888888888886553      1   33335777777777777654


Q ss_pred             h
Q 013696          209 T  209 (438)
Q Consensus       209 ~  209 (438)
                      .
T Consensus       203 ~  203 (822)
T PRK14574        203 E  203 (822)
T ss_pred             H
Confidence            4

>PRK15331 chaperone protein SicA; Provisional

Probab=99.00  E-value=5.1e-09  Score=91.17  Aligned_cols=100  Identities=13%  Similarity=0.033  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg  165 (438)
                      .+..|..++..|+|++|...|+-..-.+|. ...|..+|.|+..+++|++|+..|..|..++++++...+..|.||..+|
T Consensus        40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~  119 (165)
T PRK15331         40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence            778999999999999999999999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHH
Q 013696          166 KLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       166 ~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      +...|+..|..++. .|.+..+
T Consensus       120 ~~~~A~~~f~~a~~-~~~~~~l  140 (165)
T PRK15331        120 KAAKARQCFELVNE-RTEDESL  140 (165)
T ss_pred             CHHHHHHHHHHHHh-CcchHHH
Confidence            99999999999998 5665544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.99  E-value=1.4e-08  Score=107.12  Aligned_cols=122  Identities=16%  Similarity=0.166  Sum_probs=118.4

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~  137 (438)
                      |-.|++++|...+.+++..+|.+..+  |+.+|.+|-..|+.++|+.++..|-.++|. ...|..+|.....+|++.+|.
T Consensus       150 farg~~eeA~~i~~EvIkqdp~~~~a--y~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~  227 (895)
T KOG2076|consen  150 FARGDLEEAEEILMEVIKQDPRNPIA--YYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR  227 (895)
T ss_pred             HHhCCHHHHHHHHHHHHHhCccchhh--HHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence            45599999999999999999999999  779999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P  182 (438)
                      -+|.+||+.+|.+.+.+++++..|.++|++..|...|.+++.+.|
T Consensus       228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999999999999999999999999

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.98  E-value=3.1e-09  Score=110.36  Aligned_cols=124  Identities=22%  Similarity=0.160  Sum_probs=113.5

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..+.-++|..++.++-.++|.....  |+..|..+...|++.+|..+|..|+.++|+ ..+...+|.+++..|+-.-|..
T Consensus       662 ~~~~~~~a~~CL~Ea~~~~~l~~~~--~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~  739 (799)
T KOG4162|consen  662 LSGNDDEARSCLLEASKIDPLSASV--YYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEK  739 (799)
T ss_pred             hcCCchHHHHHHHHHHhcchhhHHH--HHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHH
Confidence            5677888888999998888877666  779999999999999999999999999999 8889999999999998888888


Q ss_pred             --HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696          139 --DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       139 --~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~  185 (438)
                        ....++++||.++++|+.+|.++..+|+.++|.++|..|+.|++.+|
T Consensus       740 ~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  740 RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence              99999999999999999999999999999999999999999998876

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.95  E-value=2e-08  Score=95.87  Aligned_cols=103  Identities=8%  Similarity=0.015  Sum_probs=94.0

Q ss_pred             HHHHHHHHHH-HHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc---HHHHHH
Q 013696           85 TSEKELGNEC-FKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSR  156 (438)
Q Consensus        85 ~~~~~~g~~~-~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~---~~a~~~  156 (438)
                      ..++..|..+ ++.|+|++|+..|...+..+|+    +.+++.+|.+|+..|+|++|+..|.+++...|++   +.+++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3367788876 6679999999999999999998    5899999999999999999999999999988874   788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          157 RATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       157 lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      +|.++..+|++++|+..|+++++..|+...+
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            9999999999999999999999999998765

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.94  E-value=1.6e-08  Score=87.95  Aligned_cols=118  Identities=16%  Similarity=0.129  Sum_probs=100.0

Q ss_pred             cCCCccchHHHHHhhhcCCCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ  134 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~  134 (438)
                      ..++...+...++..+..+|+.+. ......+|..++..|+|++|+..|..++...|+    ..+..++|.+++..|+|+
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            345667777788888888888833 345778999999999999999999999998765    677899999999999999


Q ss_pred             HHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013696          135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL  178 (438)
Q Consensus       135 eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al  178 (438)
                      +|+..+.. +.-.+-.+.++..+|.++...|++++|+..|+++|
T Consensus       103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            99999966 34444557788999999999999999999999875

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.94  E-value=3e-09  Score=109.35  Aligned_cols=149  Identities=21%  Similarity=0.228  Sum_probs=121.7

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcC--------CCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC--------CC-
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMN--------EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--------PT-  116 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~--------~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~--------p~-  116 (438)
                      ++..| ..|+|+.|+..+..++.+        .|.  .+..++.+|..|..+++|.+|+..|.+|+.+.        |. 
T Consensus       205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~--va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v  282 (508)
T KOG1840|consen  205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLV--VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV  282 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHH--HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            33345 789999999999999987        222  22335679999999999999999999999873        33 


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CC
Q 013696          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLD--------DRYIKAYSRRATARKELGKLKESIEDSEFALRLE-----PQ  183 (438)
Q Consensus       117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~--------p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~-----P~  183 (438)
                      +.++.|+|..|.+.|+|.+|..+|++|+.+-        |.-...+..++.++..++++++|+.++++++++.     +.
T Consensus       283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~  362 (508)
T KOG1840|consen  283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED  362 (508)
T ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence            7889999999999999999999999999774        3345678899999999999999999999999875     33


Q ss_pred             CHHH-------------HHHHHHHHHHHHHHHhhc
Q 013696          184 NQEI-------------KKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       184 ~~~~-------------~~~l~~a~~~~~ka~~~~  205 (438)
                      ++..             .+.+.+|.++|.+++...
T Consensus       363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            3222             567788888888887765

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.93  E-value=5.3e-09  Score=77.64  Aligned_cols=64  Identities=22%  Similarity=0.306  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccH
Q 013696           88 KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI  151 (438)
Q Consensus        88 ~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~  151 (438)
                      +.+|..++..|+|++|+.+|+++++.+|. +.+++.+|.|+..+|++++|+..|++++.++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            36799999999999999999999999999 99999999999999999999999999999999875

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.93  E-value=5.3e-08  Score=89.60  Aligned_cols=145  Identities=17%  Similarity=0.090  Sum_probs=128.3

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      +.|+.+-|..++.+.-...|+....  .+..|..+-..|+|++|+++|...++-+|. ..++-..-.+...+|+--+|++
T Consensus        64 d~~~~~lAq~C~~~L~~~fp~S~RV--~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk  141 (289)
T KOG3060|consen   64 DTGRDDLAQKCINQLRDRFPGSKRV--GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIK  141 (289)
T ss_pred             HhcchHHHHHHHHHHHHhCCCChhH--HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHH
Confidence            5688899999999988888988888  558899999999999999999999999998 7777777777788999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-------------HHHHHHHHHHHHHHHhhc
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI-------------KKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~-------------~~~l~~a~~~~~ka~~~~  205 (438)
                      ....-+...+.+..+|.-++.+|...|+|.+|.-+++.++-+.|.++-.             ..++.-++.+|.+++.++
T Consensus       142 ~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  142 ELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999876             344556667777777766


Q ss_pred             h
Q 013696          206 A  206 (438)
Q Consensus       206 ~  206 (438)
                      +
T Consensus       222 ~  222 (289)
T KOG3060|consen  222 P  222 (289)
T ss_pred             h
Confidence            4

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.92  E-value=6.6e-08  Score=90.59  Aligned_cols=102  Identities=14%  Similarity=0.127  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc---HHHHHHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRAT  159 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~---~~a~~~lg~  159 (438)
                      +|+.|..+++.|+|..|...|..-++..|+    +.++|.||.+++.+|+|+.|...|..+++-.|++   +.+++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            779999999999999999999999999998    8999999999999999999999999999998876   577999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696          160 ARKELGKLKESIEDSEFALRLEPQNQEIK  188 (438)
Q Consensus       160 a~~~lg~~~eA~~~~~~al~l~P~~~~~~  188 (438)
                      +...+|+.++|...|+++++-.|+...+.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            99999999999999999999999987663

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.91  E-value=1.6e-08  Score=104.08  Aligned_cols=182  Identities=18%  Similarity=0.148  Sum_probs=143.0

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCC----
Q 013696            6 RDQALDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEES----   80 (438)
Q Consensus         6 r~~~~~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~----   80 (438)
                      +.-...+..++..+..+.+++.-+.+++..-. ......++.....+..++..| ..|+|.+|..++++++.+...    
T Consensus       241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e-~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~  319 (508)
T KOG1840|consen  241 ASMLNILALVYRSLGKYDEAVNLYEEALTIRE-EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA  319 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc
Confidence            34445678888888888888887777775442 222234455555667788888 899999999999999885422    


Q ss_pred             -Ch-hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCC--------C-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC--
Q 013696           81 -TP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSP--------T-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD--  147 (438)
Q Consensus        81 -~~-~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p--------~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~--  147 (438)
                       .+ .+..+.++|..+..+++|++|+.+|.+++++.-        . +..+.|+|.+|+++|+|.+|+..|.+||.+.  
T Consensus       320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~  399 (508)
T KOG1840|consen  320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE  399 (508)
T ss_pred             ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence             11 133377999999999999999999999998742        2 7789999999999999999999999999774  


Q ss_pred             ------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHH
Q 013696          148 ------DRYIKAYSRRATARKELGKLKESIEDSEFALRLE----PQNQEIK  188 (438)
Q Consensus       148 ------p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~----P~~~~~~  188 (438)
                            +.....+..+|..|.+++++.+|...|.++..+.    |+.+...
T Consensus       400 ~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~  450 (508)
T KOG1840|consen  400 LLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVT  450 (508)
T ss_pred             cccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchH
Confidence                  3346788999999999999999999999998775    5555553

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.91  E-value=2.2e-09  Score=84.17  Aligned_cols=82  Identities=22%  Similarity=0.284  Sum_probs=70.7

Q ss_pred             CCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHH
Q 013696           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD  139 (438)
Q Consensus        61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~  139 (438)
                      +|+|++|+..|++++..+|.+.....++.+|.+|++.|+|++|+..+++ +..++. ....+.+|.|++.+|+|++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            5889999999999999998653444577899999999999999999999 778887 67777889999999999999999


Q ss_pred             HHHH
Q 013696          140 CTEA  143 (438)
Q Consensus       140 ~~~a  143 (438)
                      ++++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9875

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.91  E-value=1.6e-08  Score=93.65  Aligned_cols=115  Identities=17%  Similarity=0.104  Sum_probs=109.6

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..|+|.+|+..++++..+.|++..+  |..+|.+|.+.|++++|-..|.+++++.|+ +.++.|+|+.|+-.|+++.|..
T Consensus       112 ~~g~~~~A~~~~rkA~~l~p~d~~~--~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~  189 (257)
T COG5010         112 RNGNFGEAVSVLRKAARLAPTDWEA--WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAET  189 (257)
T ss_pred             HhcchHHHHHHHHHHhccCCCChhh--hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHH
Confidence            7899999999999999999999999  669999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF  176 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~  176 (438)
                      .+..+....+.+..+..+++.+....|++.+|......
T Consensus       190 lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         190 LLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            99999999999999999999999999999999876543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=3.6e-08  Score=96.07  Aligned_cols=156  Identities=17%  Similarity=0.155  Sum_probs=135.2

Q ss_pred             CCCCCcCcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc
Q 013696           53 KPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR  131 (438)
Q Consensus        53 ~~~~~~y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~  131 (438)
                      ......|.-.++..|+.+-+++|..+|++..+  +...|+.+...|+.++|+-.|+.|+.+.|. -..|-.+-.||+..|
T Consensus       305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~a--lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~  382 (564)
T KOG1174|consen  305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEA--LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK  382 (564)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHhccCcccchH--HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence            33444467889999999999999999999999  568899999999999999999999999998 888999999999888


Q ss_pred             CHHHH------------------------------------HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013696          132 RFQEA------------------------------------EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE  175 (438)
Q Consensus       132 ~~~eA------------------------------------~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~  175 (438)
                      ++.+|                                    ...+++++.++|.+..|...+|..+..-|++..++..++
T Consensus       383 ~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe  462 (564)
T KOG1174|consen  383 RFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE  462 (564)
T ss_pred             hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence            86555                                    456677778889999999999999999999999999999


Q ss_pred             HHHhhCCCCHH---------HHHHHHHHHHHHHHHHhhchhhhh
Q 013696          176 FALRLEPQNQE---------IKKQLAEVKSLYEKEVFQKASKTL  210 (438)
Q Consensus       176 ~al~l~P~~~~---------~~~~l~~a~~~~~ka~~~~~~~~~  210 (438)
                      ++|...|++.-         +.+.+.+++..|..|+.+++.+..
T Consensus       463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~  506 (564)
T KOG1174|consen  463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR  506 (564)
T ss_pred             HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence            99999998742         367889999999999999876554

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.90  E-value=6.5e-08  Score=99.02  Aligned_cols=121  Identities=18%  Similarity=0.229  Sum_probs=114.3

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~  137 (438)
                      +++|+-++|..+...++..++.....  |..+|..+...++|++||+||+.|+.+.|+ ..+|.-++....++++|+...
T Consensus        52 ~~lg~~~ea~~~vr~glr~d~~S~vC--wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~  129 (700)
T KOG1156|consen   52 NCLGKKEEAYELVRLGLRNDLKSHVC--WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYL  129 (700)
T ss_pred             hcccchHHHHHHHHHHhccCcccchh--HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHH
Confidence            48999999999999999999888887  779999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~  181 (438)
                      ..-.+.+++.|.....|...|.++.-+|+|..|...++......
T Consensus       130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999888776655

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.90  E-value=1.2e-08  Score=101.71  Aligned_cols=123  Identities=17%  Similarity=0.040  Sum_probs=102.9

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHh----ccCCC-HHHHHHHHHHHHHhcCH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSI----ALSPT-AVAYANRAMAYLKLRRF  133 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al----~~~p~-~~~~~~la~~~~~l~~~  133 (438)
                      +..|++++|+..+++++..+|++..+  +.. +..++..|.+..+.....+++    ..+|. ..++..+|.++...|++
T Consensus        54 ~~~g~~~~A~~~~~~~l~~~P~~~~a--~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~  130 (355)
T cd05804          54 WIAGDLPKALALLEQLLDDYPRDLLA--LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY  130 (355)
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCcHHH--HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH
Confidence            37799999999999999999998866  334 666666655554444444444    34455 67788899999999999


Q ss_pred             HHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       134 ~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      ++|+..+++++.++|+++.++..+|.++...|++++|+..+++++.+.|.+
T Consensus       131 ~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~  181 (355)
T cd05804         131 DRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS  181 (355)
T ss_pred             HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence            999999999999999999999999999999999999999999999998754

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.90  E-value=6.7e-09  Score=110.26  Aligned_cols=137  Identities=22%  Similarity=0.193  Sum_probs=122.1

Q ss_pred             CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHH
Q 013696           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC  140 (438)
Q Consensus        62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~  140 (438)
                      +.+++|++.|.++|..+|.+..|  -+.+|.++...|++.+|+..|.+..+.-.+ +.+|.|+|.||+.+|+|..|++.|
T Consensus       626 k~~~KAlq~y~kvL~~dpkN~yA--ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY  703 (1018)
T KOG2002|consen  626 KHQEKALQLYGKVLRNDPKNMYA--ANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY  703 (1018)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhh--ccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence            56889999999999999999888  669999999999999999999998886665 889999999999999999999999


Q ss_pred             HHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013696          141 TEALNLD--DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (438)
Q Consensus       141 ~~al~l~--p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~k  200 (438)
                      +.+++..  .+++..+..||.+++..|.+.+|..++.+|+.+.|.++.+..++..+...+..
T Consensus       704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~  765 (1018)
T KOG2002|consen  704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAE  765 (1018)
T ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHH
Confidence            9999754  46789999999999999999999999999999999999886666655554443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.89  E-value=1.7e-08  Score=105.38  Aligned_cols=125  Identities=15%  Similarity=0.093  Sum_probs=106.4

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHh--------ccHHHHHHHHHHHhcc--CCC-HHHHHHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ--------KKFKEAIDCYSRSIAL--SPT-AVAYANRAMAYL  128 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~--------g~y~~Ai~~y~~al~~--~p~-~~~~~~la~~~~  128 (438)
                      ..+.+..|+.+|+++++++|++..+++  .++.++...        ++...|.....+++.+  +|. +.+|.-+|..+.
T Consensus       354 ~~~~~~~A~~lle~Ai~ldP~~a~a~A--~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~  431 (517)
T PRK10153        354 DAKSLNKASDLLEEILKSEPDFTYAQA--EKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQAL  431 (517)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCcHHHHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH
Confidence            345588999999999999999988865  666666443        3455667777777775  555 888999999999


Q ss_pred             HhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       129 ~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      ..|++++|...+++|+.++| +..+|..+|.++...|++++|++.|++|++++|.++..
T Consensus       432 ~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        432 VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence            99999999999999999999 58899999999999999999999999999999998754

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.88  E-value=3.8e-08  Score=96.75  Aligned_cols=149  Identities=17%  Similarity=0.114  Sum_probs=128.6

Q ss_pred             CcCcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHH
Q 013696           57 SGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE  135 (438)
Q Consensus        57 ~~y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~e  135 (438)
                      .+|..|++++|.+.|.++|..+....++  ++++|..+-.+|+.++|+.||-+...+--+ +.+++.++.+|..+.+..+
T Consensus       499 ~~f~ngd~dka~~~ykeal~ndasc~ea--lfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aq  576 (840)
T KOG2003|consen  499 IAFANGDLDKAAEFYKEALNNDASCTEA--LFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQ  576 (840)
T ss_pred             eeeecCcHHHHHHHHHHHHcCchHHHHH--HHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHH
Confidence            3478999999999999999988766667  889999999999999999999998887666 8999999999999999999


Q ss_pred             HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----------HHHHHHHHHHHHHHhhc
Q 013696          136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       136 A~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~ka~~~~  205 (438)
                      |++++.++..+-|+++..+..+|..|-+-|+-.+|.+++-...+..|.|.+..          .-.++++.+++++....
T Consensus       577 aie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq  656 (840)
T KOG2003|consen  577 AIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ  656 (840)
T ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999888888888887652          23356666666665555


Q ss_pred             hh
Q 013696          206 AS  207 (438)
Q Consensus       206 ~~  207 (438)
                      ++
T Consensus       657 p~  658 (840)
T KOG2003|consen  657 PN  658 (840)
T ss_pred             cc
Confidence            43

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.85  E-value=5.4e-08  Score=106.43  Aligned_cols=167  Identities=13%  Similarity=0.071  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc
Q 013696           20 QDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK   98 (438)
Q Consensus        20 ~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g   98 (438)
                      +++..++....+.++..+....         ....+...+ ..|++++|+.++++++  +|.+.....+..+|..|..+|
T Consensus        48 Gd~~~Al~~L~qaL~~~P~~~~---------av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~g  116 (822)
T PRK14574         48 GDTAPVLDYLQEESKAGPLQSG---------QVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEK  116 (822)
T ss_pred             CCHHHHHHHHHHHHhhCccchh---------hHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcC
Confidence            3445667777777766541110         000112223 6699999999999999  555555555667788999999


Q ss_pred             cHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013696           99 KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA  177 (438)
Q Consensus        99 ~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~a  177 (438)
                      +|++|++.|+++++.+|+ +.++..++.+|...+++++|+..+.+++..+|.+... ..++.++...+++.+|+..|+++
T Consensus       117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekl  195 (822)
T PRK14574        117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEA  195 (822)
T ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHH
Confidence            999999999999999999 8888899999999999999999999999999986554 55666676788888899999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHH
Q 013696          178 LRLEPQNQEIKKQLAEVKSLY  198 (438)
Q Consensus       178 l~l~P~~~~~~~~l~~a~~~~  198 (438)
                      +.++|++.++...+-.++..+
T Consensus       196 l~~~P~n~e~~~~~~~~l~~~  216 (822)
T PRK14574        196 VRLAPTSEEVLKNHLEILQRN  216 (822)
T ss_pred             HHhCCCCHHHHHHHHHHHHHc
Confidence            999999999877666655543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.85  E-value=9.1e-08  Score=80.09  Aligned_cols=108  Identities=25%  Similarity=0.114  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc---cHHHHHHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR---YIKAYSRRAT  159 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~---~~~a~~~lg~  159 (438)
                      +++.|.++-..|+.++|+.+|++++.....    ..++.++|.+|..+|++++|+..++.++.-.|+   +......++.
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al   83 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL   83 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence            679999999999999999999999997644    778999999999999999999999999999888   7788888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013696          160 ARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (438)
Q Consensus       160 a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~k  200 (438)
                      ++..+|++++|+..+-.++.-.      ...|.+++..|..
T Consensus        84 ~L~~~gr~~eAl~~~l~~la~~------~~~y~ra~~~ya~  118 (120)
T PF12688_consen   84 ALYNLGRPKEALEWLLEALAET------LPRYRRAIRFYAD  118 (120)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence            9999999999999998887522      2266677766643

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.84  E-value=3.1e-08  Score=93.91  Aligned_cols=144  Identities=18%  Similarity=0.150  Sum_probs=120.3

Q ss_pred             CCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC------HHHHHHHHH
Q 013696           53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAM  125 (438)
Q Consensus        53 ~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~------~~~~~~la~  125 (438)
                      ..+|.-| ..|-++.|...|........--..|  +..+-++|-...+|++||++-++...+.+.      +..|+.+|.
T Consensus       111 ~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~A--lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq  188 (389)
T COG2956         111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGA--LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQ  188 (389)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH
Confidence            4556667 7788899999888877654444445  668899999999999999999999999876      677999999


Q ss_pred             HHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHH
Q 013696          126 AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN-QEIKKQLAEVKSLY  198 (438)
Q Consensus       126 ~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~-~~~~~~l~~a~~~~  198 (438)
                      .+....+++.|...+.+|++-+|.++.+-..+|.++...|+|+.|++.++.+++.||.. +++...+.+|...+
T Consensus       189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l  262 (389)
T COG2956         189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL  262 (389)
T ss_pred             HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999976 34444444444433

>PRK11906 transcriptional regulator; Provisional

Probab=98.83  E-value=6.3e-08  Score=97.01  Aligned_cols=123  Identities=11%  Similarity=0.020  Sum_probs=111.1

Q ss_pred             CCccchHHHHHhhh---cCCCCChhHHHHHHHHHHHHHh---------ccHHHHHHHHHHHhccCCC-HHHHHHHHHHHH
Q 013696           62 SRNYDPVSHISSSL---MNEESTPDATSEKELGNECFKQ---------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYL  128 (438)
Q Consensus        62 g~~~eAi~~~~~al---~~~p~~~~a~~~~~~g~~~~~~---------g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~  128 (438)
                      .....|+.+|.+++   .++|....++.  .++.+++..         ....+|...-.+|++++|. +.+++.+|.++.
T Consensus       272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~--~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~  349 (458)
T PRK11906        272 ESIYRAMTIFDRLQNKSDIQTLKTECYC--LLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITG  349 (458)
T ss_pred             HHHHHHHHHHHHHhhcccCCcccHHHHH--HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            35678999999999   89999888844  778777664         3467899999999999998 999999999999


Q ss_pred             HhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696          129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (438)
Q Consensus       129 ~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~  186 (438)
                      ..++++.|+..|++|+.++|+.+.+|+.+|+++...|+.++|.+.++++++++|.-..
T Consensus       350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~  407 (458)
T PRK11906        350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK  407 (458)
T ss_pred             hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence            9999999999999999999999999999999999999999999999999999997543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.81  E-value=1e-07  Score=100.86  Aligned_cols=124  Identities=17%  Similarity=0.194  Sum_probs=113.9

Q ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 013696           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (438)
Q Consensus        83 ~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~  161 (438)
                      .+..+...||.++..|++++|...+.++|.++|. +.+|+.+|.||..+|+.+.|....-.|-.++|.+..-|.++|...
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            3555788999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhch
Q 013696          162 KELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKA  206 (438)
Q Consensus       162 ~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~  206 (438)
                      ..+|++.+|.-+|.+|++.+|.+.+.          .|.+..|..-|.+...+.+
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999776          4667777777777776665

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=3.2e-08  Score=96.85  Aligned_cols=114  Identities=19%  Similarity=0.204  Sum_probs=95.0

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCCC-------------hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHH
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEEST-------------PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVA  119 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~-------------~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~  119 (438)
                      -|+.| ..|+|..|+..|++++..-+..             .....+.+++.+|.++++|..|+.+.+++|.++|+ ..+
T Consensus       214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA  293 (397)
T KOG0543|consen  214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA  293 (397)
T ss_pred             hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence            34444 8999999999999988743211             11223789999999999999999999999999998 999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Q 013696          120 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK  168 (438)
Q Consensus       120 ~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~  168 (438)
                      +|.+|.+++.+++|+.|+.+|.+|++++|.|-.+..-+..+..+..++.
T Consensus       294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~  342 (397)
T KOG0543|consen  294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYE  342 (397)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999877777776665554443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=4.8e-08  Score=95.27  Aligned_cols=138  Identities=12%  Similarity=0.028  Sum_probs=84.6

Q ss_pred             ccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHH
Q 013696           48 LKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAM  125 (438)
Q Consensus        48 ~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~  125 (438)
                      +...+..+|.+| ..|++++|+..|+++.-++|.+..+..  ..|..+...|+|++--..-...+.++.. +.-|+--|.
T Consensus       231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD--~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~  308 (564)
T KOG1174|consen  231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD--LYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ  308 (564)
T ss_pred             cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH--HHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence            344456677776 899999999999999999998877654  4455555555555544444444444433 444444444


Q ss_pred             HHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          126 AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       126 ~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      ..+..++|..|+.+..++|+.+|++..++...|.++..+|+.++|+-.|+.|..+.|..-+.
T Consensus       309 ~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~  370 (564)
T KOG1174|consen  309 LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI  370 (564)
T ss_pred             hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH
Confidence            45555555555555555555555555555555555555555555555555555555544433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.78  E-value=2.7e-08  Score=97.83  Aligned_cols=128  Identities=19%  Similarity=0.120  Sum_probs=85.9

Q ss_pred             CccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHH
Q 013696           63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT  141 (438)
Q Consensus        63 ~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~  141 (438)
                      ++.+|-.+...++.++..++.+  +.+.|+..|..|+|++|.+.|..++.-+.. ..+++|+|..+..+|+.++|+.+|-
T Consensus       471 ~~~~aqqyad~aln~dryn~~a--~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~  548 (840)
T KOG2003|consen  471 DFADAQQYADIALNIDRYNAAA--LTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFL  548 (840)
T ss_pred             chhHHHHHHHHHhcccccCHHH--hhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHH
Confidence            3444445555555555444445  446677777777777777777777766655 6777777777777777777777777


Q ss_pred             HHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013696          142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA  192 (438)
Q Consensus       142 ~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  192 (438)
                      +.-.+--+++..++.++.+|..+.+..+|+++|-++..+-|+++.++..+.
T Consensus       549 klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~  599 (840)
T KOG2003|consen  549 KLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLA  599 (840)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence            666655566777777777777777777777777777777777776654443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.78  E-value=3.7e-08  Score=101.99  Aligned_cols=155  Identities=17%  Similarity=0.202  Sum_probs=132.7

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCc-CcCCCccchHHHHHhhhcCCCCChhHHHHHH
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSG-NSYSRNYDPVSHISSSLMNEESTPDATSEKE   89 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~   89 (438)
                      -++|+..+-.-||++..-.+....+..               +..|.. |..++|.++..+++..+.++|-....  |+.
T Consensus       462 ~LGDv~~d~s~yEkawElsn~~sarA~---------------r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~--wf~  524 (777)
T KOG1128|consen  462 LLGDVLHDPSLYEKAWELSNYISARAQ---------------RSLALLILSNKDFSEADKHLERSLEINPLQLGT--WFG  524 (777)
T ss_pred             HhhhhccChHHHHHHHHHhhhhhHHHH---------------HhhccccccchhHHHHHHHHHHHhhcCccchhH--HHh
Confidence            456777777778777664333322211               112222 46789999999999999999988887  889


Q ss_pred             HHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Q 013696           90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK  168 (438)
Q Consensus        90 ~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~  168 (438)
                      +|.+..+.+++..|..+|.+++.++|+ ..+|.|++.+|.++++-.+|-..+.+|++.+-.+.+.|-|.-.+....|.++
T Consensus       525 ~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~e  604 (777)
T KOG1128|consen  525 LGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFE  604 (777)
T ss_pred             ccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHH
Confidence            999999999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCC
Q 013696          169 ESIEDSEFALRLEP  182 (438)
Q Consensus       169 eA~~~~~~al~l~P  182 (438)
                      +|+..|.+.+.+.-
T Consensus       605 da~~A~~rll~~~~  618 (777)
T KOG1128|consen  605 DAIKAYHRLLDLRK  618 (777)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999987753

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.77  E-value=3.9e-08  Score=88.06  Aligned_cols=114  Identities=21%  Similarity=0.225  Sum_probs=96.9

Q ss_pred             CCCCCCcC-cCCCccchHHHHHhhhcCCCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHH
Q 013696           52 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL  128 (438)
Q Consensus        52 ~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~  128 (438)
                      +...|..| ..|++++|+.+|.+++...|+... +..+..+|.++...|+|++|+.+|.+++...|. ..++.++|.+|.
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  117 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH  117 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34455555 789999999999999988765442 445889999999999999999999999999998 889999999999


Q ss_pred             HhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696          129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       129 ~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~  185 (438)
                      .+|+...+...+..++.                    .+.+|++++++++.++|++.
T Consensus       118 ~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        118 KRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence            99998888877776653                    37889999999999999873

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.77  E-value=4.8e-08  Score=80.86  Aligned_cols=95  Identities=14%  Similarity=0.130  Sum_probs=85.0

Q ss_pred             cCCCccchHHHHHhhhcCCCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ  134 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~  134 (438)
                      ..|++++|+..|.+++...|++.. ...++.+|.+++..|+|+.|+.+|.+++..+|+    +.+++++|.++..+|+++
T Consensus        14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~   93 (119)
T TIGR02795        14 KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKE   93 (119)
T ss_pred             HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChH
Confidence            779999999999999998887632 233779999999999999999999999999887    678999999999999999


Q ss_pred             HHHHHHHHHhhcCCccHHHH
Q 013696          135 EAEDDCTEALNLDDRYIKAY  154 (438)
Q Consensus       135 eA~~~~~~al~l~p~~~~a~  154 (438)
                      +|+..+.+++...|++..+.
T Consensus        94 ~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        94 KAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHHHHHHHHCcCChhHH
Confidence            99999999999999987653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.77  E-value=2.1e-07  Score=85.66  Aligned_cols=140  Identities=19%  Similarity=0.206  Sum_probs=109.7

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhc--
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLR--  131 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~--  131 (438)
                      +..|+|.+|+..|+.++...|..+. ..+.+.+|.++++.|+|..|+..|++.+...|+    +.+++.+|.+++.+.  
T Consensus        16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~   95 (203)
T PF13525_consen   16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPG   95 (203)
T ss_dssp             HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCcc
Confidence            3789999999999999998887654 234779999999999999999999999999998    788999999987764  


Q ss_pred             ---------CHHHHHHHHHHHhhcCCccHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696          132 ---------RFQEAEDDCTEALNLDDRYIKA-----------------YSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       132 ---------~~~eA~~~~~~al~l~p~~~~a-----------------~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~  185 (438)
                               ...+|+..|+..+...|+...+                 -+..|.-|...|+|..|+.-++.+++-.|+.+
T Consensus        96 ~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~  175 (203)
T PF13525_consen   96 ILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP  175 (203)
T ss_dssp             HH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred             chhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence                     3458999999999999976321                 23467888999999999999999999999998


Q ss_pred             HHHHHHHHHHHHH
Q 013696          186 EIKKQLAEVKSLY  198 (438)
Q Consensus       186 ~~~~~l~~a~~~~  198 (438)
                      ....-+....+.|
T Consensus       176 ~~~~al~~l~~~y  188 (203)
T PF13525_consen  176 AAEEALARLAEAY  188 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            7754444444433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.72  E-value=3.6e-07  Score=77.96  Aligned_cols=103  Identities=20%  Similarity=0.193  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccH---HHHHHH
Q 013696           85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI---KAYSRR  157 (438)
Q Consensus        85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~---~a~~~l  157 (438)
                      ..++..|...++.|+|.+|++.|+......|.    ..+...+|.+|++.++|++|+..+++-|+++|.++   .+++.+
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~   90 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR   90 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence            34889999999999999999999999999986    78899999999999999999999999999999875   579999


Q ss_pred             HHHHHHcCC---------------HHHHHHHHHHHHhhCCCCHHH
Q 013696          158 ATARKELGK---------------LKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       158 g~a~~~lg~---------------~~eA~~~~~~al~l~P~~~~~  187 (438)
                      |.++..+..               ...|...|+++++..|++.-+
T Consensus        91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            999999987               889999999999999988654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.71  E-value=7.1e-08  Score=104.81  Aligned_cols=134  Identities=14%  Similarity=-0.005  Sum_probs=114.9

Q ss_pred             ccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-H----
Q 013696           44 VSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A----  117 (438)
Q Consensus        44 ~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~----  117 (438)
                      ..+....++.++...| ..+++++|+...+.++...|+...+  ++.+|..++..+++.+|...  .++.+.+. .    
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~--yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~  101 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA--LYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI  101 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh--HHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence            3444444556666677 8999999999999999999999888  67899999999988877665  55555443 3    


Q ss_pred             ---------------HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696          118 ---------------VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (438)
Q Consensus       118 ---------------~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P  182 (438)
                                     .+++.+|.||-++|++++|...++++++++|+|+.++.++|..|... +.++|+.++.+|+...-
T Consensus       102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i  180 (906)
T PRK14720        102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI  180 (906)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence                           89999999999999999999999999999999999999999999999 99999999999998743

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.70  E-value=6.8e-07  Score=84.57  Aligned_cols=140  Identities=16%  Similarity=0.108  Sum_probs=114.1

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhH-HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcC-
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR-  132 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~-  132 (438)
                      +..|+|++|+..|++++...|..+.+ .+.+.+|.++++.++|++|+..|++.++.+|+    +.+++.+|.|+..++. 
T Consensus        43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~  122 (243)
T PRK10866         43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS  122 (243)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh
Confidence            37799999999999999999988664 23579999999999999999999999999987    7889999999765541 


Q ss_pred             -----------------HHHHHHHHHHHhhcCCccHH---H--------------HHHHHHHHHHcCCHHHHHHHHHHHH
Q 013696          133 -----------------FQEAEDDCTEALNLDDRYIK---A--------------YSRRATARKELGKLKESIEDSEFAL  178 (438)
Q Consensus       133 -----------------~~eA~~~~~~al~l~p~~~~---a--------------~~~lg~a~~~lg~~~eA~~~~~~al  178 (438)
                                       -..|+..|++.+...|+...   +              -+..|.-|.+.|+|..|+.-++.++
T Consensus       123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~  202 (243)
T PRK10866        123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQML  202 (243)
T ss_pred             hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence                             35788999999999997632   2              2345667889999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHH
Q 013696          179 RLEPQNQEIKKQLAEVKSLY  198 (438)
Q Consensus       179 ~l~P~~~~~~~~l~~a~~~~  198 (438)
                      .-.|+.+....-+......|
T Consensus       203 ~~Yp~t~~~~eal~~l~~ay  222 (243)
T PRK10866        203 RDYPDTQATRDALPLMENAY  222 (243)
T ss_pred             HHCCCCchHHHHHHHHHHHH
Confidence            99999877654444444443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.70  E-value=6.5e-08  Score=73.38  Aligned_cols=64  Identities=31%  Similarity=0.454  Sum_probs=48.9

Q ss_pred             HHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       124 a~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      ..+|+..++|++|+.++++++.++|+++.+|+.+|.++..+|++.+|+.+|++++++.|+++.+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            4567777777777777777777777777777777777777777777777777777777776655

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.69  E-value=1.1e-07  Score=73.43  Aligned_cols=88  Identities=28%  Similarity=0.457  Sum_probs=81.9

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..|++++|+..+.+++...|.+..+  +..+|.++...|++++|+.+|.+++...|. ..++..+|.++...|+++.|..
T Consensus        12 ~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   89 (100)
T cd00189          12 KLGDYDEALEYYEKALELDPDNADA--YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALE   89 (100)
T ss_pred             HHhcHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHH
Confidence            6789999999999999999888766  779999999999999999999999999998 7899999999999999999999


Q ss_pred             HHHHHhhcCCc
Q 013696          139 DCTEALNLDDR  149 (438)
Q Consensus       139 ~~~~al~l~p~  149 (438)
                      .+.+++..+|.
T Consensus        90 ~~~~~~~~~~~  100 (100)
T cd00189          90 AYEKALELDPN  100 (100)
T ss_pred             HHHHHHccCCC
Confidence            99999988873

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.67  E-value=9.8e-08  Score=72.38  Aligned_cols=69  Identities=28%  Similarity=0.431  Sum_probs=63.8

Q ss_pred             HHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 013696           91 GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  159 (438)
Q Consensus        91 g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~  159 (438)
                      ...|+..++|+.|+.++++++.++|+ +.+|..+|.||..+|+|.+|+.++++++..+|+++.+...++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            57889999999999999999999999 9999999999999999999999999999999999887765543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.67  E-value=3.9e-07  Score=75.69  Aligned_cols=98  Identities=26%  Similarity=0.271  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc----HHHHHHHHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY----IKAYSRRATAR  161 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~----~~a~~~lg~a~  161 (438)
                      +-..|..+...|+.+.|++.|.++|.+.|. +.+|.|++.+|.-+|+.++|+.++.+|+.+..+-    ..+|..+|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            456788899999999999999999999999 9999999999999999999999999999997543    45799999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCC
Q 013696          162 KELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       162 ~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      ..+|+-+.|..+|+.+-++....
T Consensus       126 Rl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  126 RLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHhCchHHHHHhHHHHHHhCCHH
Confidence            99999999999999998887644

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.66  E-value=1.1e-07  Score=101.14  Aligned_cols=151  Identities=13%  Similarity=0.112  Sum_probs=124.7

Q ss_pred             cCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC---HHHHHHHHHH
Q 013696           51 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMA  126 (438)
Q Consensus        51 ~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~  126 (438)
                      .+.-+|..| ...+...|..+|.++..+++.+..+  ....+..|....+++.|.....++-+..|-   ...|..+|..
T Consensus       494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea--aaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA--AAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh--HHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            345566666 3447888899999999999887777  448888888889999888887777676665   4567779999


Q ss_pred             HHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHH
Q 013696          127 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKS  196 (438)
Q Consensus       127 ~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~  196 (438)
                      |+..+++..|+.+|+.|++.+|.+..+|..+|.+|...|+|..|+..|.++..++|.+.-.          .+.+.++..
T Consensus       572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald  651 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD  651 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999987643          566777777


Q ss_pred             HHHHHHh
Q 013696          197 LYEKEVF  203 (438)
Q Consensus       197 ~~~ka~~  203 (438)
                      .+...+.
T Consensus       652 ~l~~ii~  658 (1238)
T KOG1127|consen  652 ALGLIIY  658 (1238)
T ss_pred             HHHHHHH
Confidence            6665443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.66  E-value=4.8e-07  Score=94.50  Aligned_cols=133  Identities=14%  Similarity=0.090  Sum_probs=109.9

Q ss_pred             CCCCChhHHHHHHHHHHHHHhcc---HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc--------CHHHHHHHHHHHh
Q 013696           77 NEESTPDATSEKELGNECFKQKK---FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR--------RFQEAEDDCTEAL  144 (438)
Q Consensus        77 ~~p~~~~a~~~~~~g~~~~~~g~---y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~--------~~~eA~~~~~~al  144 (438)
                      .-|.+..++.++..|..++..+.   +..|+.+|+++++++|+ +.+|..++.+|....        +...+.....+++
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            34677788889999999887654   88999999999999999 899998888886653        2445666667766


Q ss_pred             hc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhchhhhh
Q 013696          145 NL--DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTL  210 (438)
Q Consensus       145 ~l--~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~~~~~  210 (438)
                      .+  +|.++.+|..+|..+...|++++|...|++|+.++|+ ..+          .|+.++|...|.+|+.+++..+.
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            64  7888899999999999999999999999999999995 444          45778899999999998877654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.66  E-value=6.8e-07  Score=89.31  Aligned_cols=120  Identities=19%  Similarity=0.106  Sum_probs=111.4

Q ss_pred             CCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHH
Q 013696           79 ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRR  157 (438)
Q Consensus        79 p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~l  157 (438)
                      |....+  +|..+..++..|+++.|...++..+...|+ +..+..++.+++..++..+|++.+++++.++|+.+-.+.++
T Consensus       303 ~~~~aa--~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~  380 (484)
T COG4783         303 RGGLAA--QYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL  380 (484)
T ss_pred             ccchHH--HHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence            444555  779999999999999999999999999999 88899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013696          158 ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (438)
Q Consensus       158 g~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~k  200 (438)
                      |.+|.+.|++++|+..++..+.-+|+++..|..+.+|......
T Consensus       381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~  423 (484)
T COG4783         381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN  423 (484)
T ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence            9999999999999999999999999999999888888776553

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.64  E-value=4.5e-07  Score=80.77  Aligned_cols=101  Identities=20%  Similarity=0.182  Sum_probs=84.0

Q ss_pred             HHHHHhccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcC
Q 013696           92 NECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR---YIKAYSRRATARKELG  165 (438)
Q Consensus        92 ~~~~~~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~---~~~a~~~lg~a~~~lg  165 (438)
                      +.+|-.+.|..+...+...++.++.   +.+|+++|.++..+|+|++|+..|.+++.+.|+   .+.+|+++|.++..+|
T Consensus         7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g   86 (168)
T CHL00033          7 NDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG   86 (168)
T ss_pred             cccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC
Confidence            3445556677777777666666654   788999999999999999999999999998765   3458999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013696          166 KLKESIEDSEFALRLEPQNQEIKKQLA  192 (438)
Q Consensus       166 ~~~eA~~~~~~al~l~P~~~~~~~~l~  192 (438)
                      ++++|+.+|++++.++|.+...+..+.
T Consensus        87 ~~~eA~~~~~~Al~~~~~~~~~~~~la  113 (168)
T CHL00033         87 EHTKALEYYFQALERNPFLPQALNNMA  113 (168)
T ss_pred             CHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            999999999999999999877644333

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.64  E-value=6.9e-07  Score=89.02  Aligned_cols=120  Identities=13%  Similarity=-0.024  Sum_probs=98.6

Q ss_pred             CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHH
Q 013696           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC  140 (438)
Q Consensus        62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~  140 (438)
                      +....+...+......+|....+  +..+|.++...|++++|+..++++++++|+ +.++..+|.+|...|++++|+..+
T Consensus        94 ~~~~~~~~~l~~~~~~~~~~~~~--~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l  171 (355)
T cd05804          94 GMRDHVARVLPLWAPENPDYWYL--LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFM  171 (355)
T ss_pred             cCchhHHHHHhccCcCCCCcHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34444444444433444444444  558899999999999999999999999999 889999999999999999999999


Q ss_pred             HHHhhcCCccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696          141 TEALNLDDRYI----KAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       141 ~~al~l~p~~~----~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~  183 (438)
                      .+++...|..+    ..|..+|.++...|++++|+..|++++...|.
T Consensus       172 ~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~  218 (355)
T cd05804         172 ESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE  218 (355)
T ss_pred             HhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence            99999987432    35678999999999999999999999877773

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.64  E-value=2.4e-07  Score=82.42  Aligned_cols=95  Identities=26%  Similarity=0.295  Sum_probs=86.6

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChh---HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPD---ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ  134 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~---a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~  134 (438)
                      |..|+|.+|..-|..+|.+-|....   +..|.+.|.++++++.++.||....++|+++|. ..++..+|.+|.++..|+
T Consensus       106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e  185 (271)
T KOG4234|consen  106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE  185 (271)
T ss_pred             hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH
Confidence            5899999999999999999887643   445779999999999999999999999999999 888999999999999999


Q ss_pred             HHHHHHHHHhhcCCccHHH
Q 013696          135 EAEDDCTEALNLDDRYIKA  153 (438)
Q Consensus       135 eA~~~~~~al~l~p~~~~a  153 (438)
                      +|+.+|.+.+.++|..-.+
T Consensus       186 ealeDyKki~E~dPs~~ea  204 (271)
T KOG4234|consen  186 EALEDYKKILESDPSRREA  204 (271)
T ss_pred             HHHHHHHHHHHhCcchHHH
Confidence            9999999999999986533

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.63  E-value=1.3e-07  Score=94.63  Aligned_cols=69  Identities=23%  Similarity=0.296  Sum_probs=63.2

Q ss_pred             CCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-H---HHHHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 013696           77 NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A---VAYANRAMAYLKLRRFQEAEDDCTEALNLD  147 (438)
Q Consensus        77 ~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~---~~~~~la~~~~~l~~~~eA~~~~~~al~l~  147 (438)
                      .+|+++.+  ++++|.+|+..|+|++|+.+|+++|+++|+ +   .+|+|+|.||..+|++++|+.++.+|+.+.
T Consensus        70 ~dP~~a~a--~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAED--AVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            46777777  779999999999999999999999999999 5   469999999999999999999999999984

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.62  E-value=1.8e-07  Score=89.34  Aligned_cols=94  Identities=13%  Similarity=0.057  Sum_probs=85.5

Q ss_pred             cCCCccchHHHHHhhhcCCCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ  134 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~  134 (438)
                      ..|+|++|+..|...+...|+... ..+++.+|.+|+..|+|++|+..|.+++..+|+    +.+++.+|.+|..+|+++
T Consensus       155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~  234 (263)
T PRK10803        155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA  234 (263)
T ss_pred             hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence            458999999999999999998853 233789999999999999999999999999887    899999999999999999


Q ss_pred             HHHHHHHHHhhcCCccHHH
Q 013696          135 EAEDDCTEALNLDDRYIKA  153 (438)
Q Consensus       135 eA~~~~~~al~l~p~~~~a  153 (438)
                      +|...|++++...|+...+
T Consensus       235 ~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        235 KAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHHHHCcCCHHH
Confidence            9999999999999988654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.62  E-value=1.2e-07  Score=70.79  Aligned_cols=60  Identities=25%  Similarity=0.199  Sum_probs=31.6

Q ss_pred             HhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696          129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (438)
Q Consensus       129 ~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~  188 (438)
                      ..|+|++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++.++
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~   62 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ   62 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            445555555555555555555555555555555555555555555555555555544443

...

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.62  E-value=1.1e-07  Score=97.46  Aligned_cols=134  Identities=11%  Similarity=0.068  Sum_probs=123.1

Q ss_pred             CCCCCcCcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc
Q 013696           53 KPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR  131 (438)
Q Consensus        53 ~~~~~~y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~  131 (438)
                      .++-.+|..++|...+...+..|...|.+++..+  ..|..+...|+-++|..+...++..++. ..+|.-+|.++..-+
T Consensus        12 ~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslA--mkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK   89 (700)
T KOG1156|consen   12 RRALKCYETKQYKKGLKLIKQILKKFPEHGESLA--MKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK   89 (700)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHH--hccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence            4444557778888889999999999999999855  8899999999999999999999999998 899999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696          132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (438)
Q Consensus       132 ~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~  188 (438)
                      +|++|+++|+.|+.++|+|...|.-++....++|+|+.....-.+.|++.|+....|
T Consensus        90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w  146 (700)
T KOG1156|consen   90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASW  146 (700)
T ss_pred             hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHH
Confidence            999999999999999999999999999999999999999999999999999887653

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.62  E-value=8.8e-07  Score=90.16  Aligned_cols=142  Identities=10%  Similarity=0.075  Sum_probs=94.8

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCC------------------------
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP------------------------  115 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p------------------------  115 (438)
                      ..|+++.|+..+++.+..+|+++.+  +..++.+|...|+|++|+..+.+..+..+                        
T Consensus       165 ~~g~~~~Al~~l~~~~~~~P~~~~a--l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~  242 (398)
T PRK10747        165 ARNENHAARHGVDKLLEVAPRHPEV--LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD  242 (398)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            6788999999999999888888888  55888888888888888866555543221                        


Q ss_pred             ------------------C-HHHHHHHHHHHHHhcCHHHHHHHHHHHhh-------------------------------
Q 013696          116 ------------------T-AVAYANRAMAYLKLRRFQEAEDDCTEALN-------------------------------  145 (438)
Q Consensus       116 ------------------~-~~~~~~la~~~~~l~~~~eA~~~~~~al~-------------------------------  145 (438)
                                        + +.++...|..+...|+.++|.....+++.                               
T Consensus       243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk  322 (398)
T PRK10747        243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIK  322 (398)
T ss_pred             cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHh
Confidence                              1 33444556666667776666666666654                               


Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---------HHHHHHHHHHHHHHHh
Q 013696          146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI---------KKQLAEVKSLYEKEVF  203 (438)
Q Consensus       146 l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~---------~~~l~~a~~~~~ka~~  203 (438)
                      ..|+++..++.+|.++...|+|.+|..+|++++.+.|++...         .++.++|..+|++++.
T Consensus       323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            345555566666777777777777777777777777766542         3444555555555544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.60  E-value=1.4e-07  Score=70.52  Aligned_cols=66  Identities=26%  Similarity=0.275  Sum_probs=60.6

Q ss_pred             HHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 013696           94 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  159 (438)
Q Consensus        94 ~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~  159 (438)
                      ++..|+|++|+..|++++..+|+ ..+++.+|.||+..|++++|...+.+++..+|+++..+..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            46789999999999999999998 9999999999999999999999999999999999888777664

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.60  E-value=1.8e-06  Score=81.73  Aligned_cols=104  Identities=14%  Similarity=0.083  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc---HHHHHH
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSR  156 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~---~~a~~~  156 (438)
                      +..++..|..++..|+|++|+..|++++...|.    ..+.+++|.+|+++++|++|+..+++.+++.|++   ..+++.
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~  111 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM  111 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence            334779999999999999999999999999998    4567999999999999999999999999999987   467999


Q ss_pred             HHHHHHHcCC------------------HHHHHHHHHHHHhhCCCCHHH
Q 013696          157 RATARKELGK------------------LKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       157 lg~a~~~lg~------------------~~eA~~~~~~al~l~P~~~~~  187 (438)
                      +|.++..+++                  ..+|+..|+..++..|+..-+
T Consensus       112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya  160 (243)
T PRK10866        112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT  160 (243)
T ss_pred             HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH
Confidence            9998766651                  357889999999999988544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.59  E-value=5.5e-07  Score=98.05  Aligned_cols=125  Identities=15%  Similarity=0.071  Sum_probs=106.9

Q ss_pred             CCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccH----
Q 013696           77 NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI----  151 (438)
Q Consensus        77 ~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~----  151 (438)
                      .+|.+..+  +..+...|...+++++|+.....++...|+ ..+|+.+|..|+..+++..|...  .++.+.+.+.    
T Consensus        26 ~~p~n~~a--~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~  101 (906)
T PRK14720         26 YSLSKFKE--LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI  101 (906)
T ss_pred             CCcchHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence            46777777  669999999999999999999999999999 88999999999999988777655  5555555444    


Q ss_pred             ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH---------HHHHHHHHHHHHHhhc
Q 013696          152 ---------------KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK---------QLAEVKSLYEKEVFQK  205 (438)
Q Consensus       152 ---------------~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~---------~l~~a~~~~~ka~~~~  205 (438)
                                     .|++.+|.||.++|++++|...|+++|+++|+|+.+.+         ++.+|..++.+++...
T Consensus       102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYRF  179 (906)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence                           89999999999999999999999999999999998722         6778888888887654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.58  E-value=1.6e-06  Score=79.78  Aligned_cols=103  Identities=19%  Similarity=0.157  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc---HHHHHHH
Q 013696           85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRR  157 (438)
Q Consensus        85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~---~~a~~~l  157 (438)
                      ..++..|..++..|+|.+|+..|++.+...|.    ..+.+.+|.++++.|+|..|+..+++.+...|++   ..+++.+
T Consensus         6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~   85 (203)
T PF13525_consen    6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML   85 (203)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence            34789999999999999999999999999987    7889999999999999999999999999999986   4689999


Q ss_pred             HHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHHH
Q 013696          158 ATARKELG-----------KLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       158 g~a~~~lg-----------~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      |.++..+.           ...+|+..|+..+...|+.+-+
T Consensus        86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~  126 (203)
T PF13525_consen   86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA  126 (203)
T ss_dssp             HHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred             HHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence            99977653           3458999999999999998644

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.57  E-value=3.9e-07  Score=91.24  Aligned_cols=68  Identities=21%  Similarity=0.143  Sum_probs=65.0

Q ss_pred             cCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696          113 LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKA---YSRRATARKELGKLKESIEDSEFALRL  180 (438)
Q Consensus       113 ~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a---~~~lg~a~~~lg~~~eA~~~~~~al~l  180 (438)
                      .+|+ +.+|+|+|.+|+.+|+|++|+..|++||.++|++..+   |+++|.+|..+|++++|+.+|++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4787 9999999999999999999999999999999999865   999999999999999999999999998

>PRK15331 chaperone protein SicA; Provisional

Probab=98.54  E-value=4.8e-07  Score=78.91  Aligned_cols=90  Identities=16%  Similarity=0.110  Sum_probs=82.9

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~  137 (438)
                      |..|++++|...|+-....+|.++.-  +..+|.++-..++|++|+.+|..+..++++ +..++..|.||+.+|+...|.
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y--~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYDFYNPDY--TMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence            48999999999999999999988776  789999999999999999999999999988 888999999999999999999


Q ss_pred             HHHHHHhhcCCccH
Q 013696          138 DDCTEALNLDDRYI  151 (438)
Q Consensus       138 ~~~~~al~l~p~~~  151 (438)
                      .+|..++. .|.+.
T Consensus       126 ~~f~~a~~-~~~~~  138 (165)
T PRK15331        126 QCFELVNE-RTEDE  138 (165)
T ss_pred             HHHHHHHh-CcchH
Confidence            99999998 45543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.54  E-value=7.1e-07  Score=78.59  Aligned_cols=93  Identities=24%  Similarity=0.228  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC----------HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC--
Q 013696          100 FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR----------FQEAEDDCTEALNLDDRYIKAYSRRATARKELGK--  166 (438)
Q Consensus       100 y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~----------~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~--  166 (438)
                      |+.|.+.|......+|. +..+++-|.+++.+.+          +++|+.-|+.||.++|+...+++.+|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            45666666666667776 6667776666666543          5667888888888899998999999988887765  


Q ss_pred             ---------HHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013696          167 ---------LKESIEDSEFALRLEPQNQEIKKQLA  192 (438)
Q Consensus       167 ---------~~eA~~~~~~al~l~P~~~~~~~~l~  192 (438)
                               |++|..+|++|..++|+|......++
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe  121 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE  121 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence                     78999999999999999876544433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.54  E-value=2.3e-06  Score=81.45  Aligned_cols=118  Identities=14%  Similarity=0.110  Sum_probs=57.9

Q ss_pred             CccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHHHHHH
Q 013696           63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDC  140 (438)
Q Consensus        63 ~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA~~~~  140 (438)
                      +++.|+..+.+++..+|+...+..  .+|.++...|+|+.|++.+..+++.+|.  +.+.-.+..||..+|+.++.+..+
T Consensus       195 ~~d~A~~~l~kAlqa~~~cvRAsi--~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL  272 (389)
T COG2956         195 DVDRARELLKKALQADKKCVRASI--ILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL  272 (389)
T ss_pred             hHHHHHHHHHHHHhhCccceehhh--hhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            444455555555555555544422  5555555555555555555555555555  444455555555555555555555


Q ss_pred             HHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696          141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       141 ~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~  183 (438)
                      .++.+..+. +.+-..++..-....-.+.|..++.+-++-.|+
T Consensus       273 ~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt  314 (389)
T COG2956         273 RRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPT  314 (389)
T ss_pred             HHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence            555544432 223333333333444444555555555555444

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.53  E-value=1.1e-06  Score=88.14  Aligned_cols=113  Identities=12%  Similarity=0.126  Sum_probs=99.0

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..++++.|+..+++....+|.   +  ...++.++...++..+|+....+++...|. ..++...|..++..++++.|+.
T Consensus       181 ~t~~~~~ai~lle~L~~~~pe---v--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~  255 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERDPE---V--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE  255 (395)
T ss_pred             hcccHHHHHHHHHHHHhcCCc---H--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            447899999999998887764   4  336788888899999999999999999998 8888889999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA  177 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~a  177 (438)
                      .+++++.+.|++..+|+.+|.+|..+|+|++|+..++.+
T Consensus       256 iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  256 IAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            999999999999999999999999999999998776643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.52  E-value=1.9e-07  Score=71.86  Aligned_cols=64  Identities=30%  Similarity=0.381  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC-------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-------DRYIKAYSRRATARKELGKLKESIEDSEFALRL  180 (438)
Q Consensus       117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~-------p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l  180 (438)
                      +.++.++|.+|..+|+|++|+.+|++++.+.       |..+.+++++|.++..+|++++|++++++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4556666666666666666666666666441       122456677777777777777777777777654

...

>PRK11906 transcriptional regulator; Provisional

Probab=98.52  E-value=2e-06  Score=86.43  Aligned_cols=127  Identities=13%  Similarity=0.033  Sum_probs=108.0

Q ss_pred             hHH--HHHHHHHHHHHhc---cHHHHHHHHHHHh---ccCCC-HHHHHHHHHHHHHh---------cCHHHHHHHHHHHh
Q 013696           83 DAT--SEKELGNECFKQK---KFKEAIDCYSRSI---ALSPT-AVAYANRAMAYLKL---------RRFQEAEDDCTEAL  144 (438)
Q Consensus        83 ~a~--~~~~~g~~~~~~g---~y~~Ai~~y~~al---~~~p~-~~~~~~la~~~~~l---------~~~~eA~~~~~~al  144 (438)
                      .++  .++..|...+..+   ..+.|+.+|.+|+   .++|. +.+|..+|.|++..         ..-.+|....++|+
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            555  5667777776554   4578999999999   99999 99999999999875         13567899999999


Q ss_pred             hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhchhhh
Q 013696          145 NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKT  209 (438)
Q Consensus       145 ~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~~~~  209 (438)
                      .++|.++.++..+|.++...|+++.|...|++|+.++|+...+          .++.++|...+++++.++|...
T Consensus       332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence            9999999999999999999999999999999999999999887          3566788888888888886543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.50  E-value=1.3e-06  Score=91.38  Aligned_cols=121  Identities=22%  Similarity=0.197  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg  165 (438)
                      |...|..+.+.++-++|..|..++-.++|. +..|+.+|.++...|++++|.+.|..|+.+||+++.+...+|.++...|
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G  732 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG  732 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence            557788888899999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHH--HHHHHHhhCCCCHHHHHHHHH----------HHHHHHHHHhhchh
Q 013696          166 KLKESIE--DSEFALRLEPQNQEIKKQLAE----------VKSLYEKEVFQKAS  207 (438)
Q Consensus       166 ~~~eA~~--~~~~al~l~P~~~~~~~~l~~----------a~~~~~ka~~~~~~  207 (438)
                      +..-|..  .+..+++++|.|+++|..+++          |..+|.-++.+..+
T Consensus       733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S  786 (799)
T KOG4162|consen  733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES  786 (799)
T ss_pred             CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence            9888877  999999999999999765554          44555555555533

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.49  E-value=1.9e-06  Score=88.56  Aligned_cols=147  Identities=12%  Similarity=0.088  Sum_probs=127.3

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD  139 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~  139 (438)
                      ..|+...|...+.+++..+|++.+.  |...-...+...+|+.|-..+.++....|...+|+.-+.....+++.++|+..
T Consensus       596 ~agdv~~ar~il~~af~~~pnseei--wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rl  673 (913)
T KOG0495|consen  596 KAGDVPAARVILDQAFEANPNSEEI--WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRL  673 (913)
T ss_pred             hcCCcHHHHHHHHHHHHhCCCcHHH--HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence            6799999999999999999998777  55666777889999999999999999999988888888889999999999999


Q ss_pred             HHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH----------HHHHHHHHHHHHHhhchhh
Q 013696          140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK----------QLAEVKSLYEKEVFQKASK  208 (438)
Q Consensus       140 ~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~----------~l~~a~~~~~ka~~~~~~~  208 (438)
                      |+.+++..|++.+.|..+|.++..+++.+.|...|...++..|+....|-          ++-+|...+.++...++.+
T Consensus       674 lEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~  752 (913)
T KOG0495|consen  674 LEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN  752 (913)
T ss_pred             HHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc
Confidence            99999999999999999999999999999999999999999999987743          3344555555555554433

>TIGR00540 hemY_coli hemY protein

Probab=98.48  E-value=1.9e-06  Score=88.04  Aligned_cols=140  Identities=9%  Similarity=-0.020  Sum_probs=109.3

Q ss_pred             CccchHHHHHhhhcCCC----CChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHH--HHHHHHHHHHhcCHHH
Q 013696           63 RNYDPVSHISSSLMNEE----STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVA--YANRAMAYLKLRRFQE  135 (438)
Q Consensus        63 ~~~eAi~~~~~al~~~p----~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~--~~~la~~~~~l~~~~e  135 (438)
                      ..+++.+.+..+....|    +++..  +..+|..+...|++++|+..+.++++..|+ ...  ...+....+..++...
T Consensus       240 ~~~~~~~~L~~~~~~~p~~~~~~~~l--~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~  317 (409)
T TIGR00540       240 MADEGIDGLLNWWKNQPRHRRHNIAL--KIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK  317 (409)
T ss_pred             HHhcCHHHHHHHHHHCCHHHhCCHHH--HHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence            33445566777777666    35555  668999999999999999999999999998 321  2334445555688999


Q ss_pred             HHHHHHHHhhcCCccH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCCHHH---------HHHHHHHHHHHHHHH
Q 013696          136 AEDDCTEALNLDDRYI--KAYSRRATARKELGKLKESIEDSE--FALRLEPQNQEI---------KKQLAEVKSLYEKEV  202 (438)
Q Consensus       136 A~~~~~~al~l~p~~~--~a~~~lg~a~~~lg~~~eA~~~~~--~al~l~P~~~~~---------~~~l~~a~~~~~ka~  202 (438)
                      ++..++++++..|+++  ..+..+|.++...|+|++|.++|+  .++++.|++...         .++..+|..+|++++
T Consensus       318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999  888899999999999999999999  688899987654         344556666666665


Q ss_pred             hh
Q 013696          203 FQ  204 (438)
Q Consensus       203 ~~  204 (438)
                      ..
T Consensus       398 ~~  399 (409)
T TIGR00540       398 GL  399 (409)
T ss_pred             HH
Confidence            43

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.47  E-value=4.8e-07  Score=81.57  Aligned_cols=105  Identities=19%  Similarity=0.116  Sum_probs=100.0

Q ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 013696           82 PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA  160 (438)
Q Consensus        82 ~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a  160 (438)
                      ..+..++.+|+.|-..|=+.-|.-.|.+++.+.|. +.++..+|..+...|+|+.|.+.|...+++||.+-.++.++|.+
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~  142 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  142 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence            34666899999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696          161 RKELGKLKESIEDSEFALRLEPQNQE  186 (438)
Q Consensus       161 ~~~lg~~~eA~~~~~~al~l~P~~~~  186 (438)
                      ++--|+|.-|.+++.+-.+-+|++|-
T Consensus       143 ~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         143 LYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             eeecCchHhhHHHHHHHHhcCCCChH
Confidence            99999999999999999999999984

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.46  E-value=1.1e-06  Score=93.71  Aligned_cols=167  Identities=14%  Similarity=0.058  Sum_probs=137.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHH
Q 013696           10 LDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEK   88 (438)
Q Consensus        10 ~~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~   88 (438)
                      ..|+.++++..+--++.+.+.++..-..         ++..+...++..| ...+++.|......+-+..|.......|.
T Consensus       496 ~~LG~iYrd~~Dm~RA~kCf~KAFeLDa---------tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~  566 (1238)
T KOG1127|consen  496 AFLGQIYRDSDDMKRAKKCFDKAFELDA---------TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV  566 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCc---------hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence            5678888888877777777777664442         2222334445557 77889999888666666666555555577


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Q 013696           89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL  167 (438)
Q Consensus        89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~  167 (438)
                      .+|..|.+.++...|+..|+.+++.+|. ..+|..+|.+|...|+|.-|++.|++|..++|.+..+.|..+.....+|+|
T Consensus       567 ~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkY  646 (1238)
T KOG1127|consen  567 QRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKY  646 (1238)
T ss_pred             hccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhH
Confidence            8999999999999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCH
Q 013696          168 KESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       168 ~eA~~~~~~al~l~P~~~  185 (438)
                      .+|+..+...+.-.....
T Consensus       647 keald~l~~ii~~~s~e~  664 (1238)
T KOG1127|consen  647 KEALDALGLIIYAFSLER  664 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999998887654433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.46  E-value=2.6e-07  Score=90.23  Aligned_cols=48  Identities=8%  Similarity=-0.041  Sum_probs=25.5

Q ss_pred             cCCCCCCcC-cCCCccchHHHHHhhhcC----CCCChhHHHHHHHHHHHHHhc
Q 013696           51 AKKPSPSGN-SYSRNYDPVSHISSSLMN----EESTPDATSEKELGNECFKQK   98 (438)
Q Consensus        51 ~~~~~~~~y-~~g~~~eAi~~~~~al~~----~p~~~~a~~~~~~g~~~~~~g   98 (438)
                      .-..+|..+ -.|.|++|+-+..+-|.+    .....++.+++++|++|...|
T Consensus        97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakG  149 (639)
T KOG1130|consen   97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKG  149 (639)
T ss_pred             ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcc
Confidence            334566666 567777777766555542    222233444555555554443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.45  E-value=2.2e-06  Score=80.47  Aligned_cols=97  Identities=11%  Similarity=0.059  Sum_probs=88.3

Q ss_pred             cCCCccchHHHHHhhhcCCCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ  134 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~  134 (438)
                      ..|+|.+|...|...++..|+... ..+++++|.+++.+|+|.+|...|..+++-.|+    +.+++-+|.|...+|+.+
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d  232 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD  232 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence            679999999999999999988743 445889999999999999999999999999887    799999999999999999


Q ss_pred             HHHHHHHHHhhcCCccHHHHHH
Q 013696          135 EAEDDCTEALNLDDRYIKAYSR  156 (438)
Q Consensus       135 eA~~~~~~al~l~p~~~~a~~~  156 (438)
                      +|-..++++++..|+...+...
T Consensus       233 ~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         233 EACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHH
Confidence            9999999999999998776543

>TIGR00540 hemY_coli hemY protein

Probab=98.44  E-value=5.2e-06  Score=84.80  Aligned_cols=127  Identities=9%  Similarity=-0.020  Sum_probs=112.8

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHhcCHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTA--VAYANRAMAYLKLRRFQEA  136 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~--~~~~~la~~~~~l~~~~eA  136 (438)
                      +..|++..|...+.++....|.....  +...|..+...|+++.|..+|.++.+..|+.  .+...++.+++..|+++.|
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~~~~~--~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAEPVLN--LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence            47799999999999999988765555  5578999999999999999999999998883  4555579999999999999


Q ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       137 ~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      ...++..++..|+++.++..++.++...|++++|...+.+.++....++..
T Consensus       173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~  223 (409)
T TIGR00540       173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEE  223 (409)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHH
Confidence            999999999999999999999999999999999999999999886655443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.44  E-value=3.4e-07  Score=88.70  Aligned_cols=172  Identities=14%  Similarity=0.120  Sum_probs=115.5

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcCcCCCccchHHHHHhhhcCCC--C--ChhHHH
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEE--S--TPDATS   86 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~g~~~eAi~~~~~al~~~p--~--~~~a~~   86 (438)
                      ...+.++..++|+++...+.+...-...   .+........+...+.+|..+++++|+.+|.+++.+.-  +  ...+..
T Consensus        40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~---~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~  116 (282)
T PF14938_consen   40 KAANCFKLAKDWEKAAEAYEKAADCYEK---LGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKC  116 (282)
T ss_dssp             HHHHHHHHTT-CHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            3456666777787777765554322210   00011112223344555655688899999999987431  1  223556


Q ss_pred             HHHHHHHHHHh-ccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc------cH-
Q 013696           87 EKELGNECFKQ-KKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR------YI-  151 (438)
Q Consensus        87 ~~~~g~~~~~~-g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~------~~-  151 (438)
                      +..+|..|... |++++|+++|.+|+.+...       ..++.+.|.++..+|+|++|+..|+++....-+      .+ 
T Consensus       117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~  196 (282)
T PF14938_consen  117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK  196 (282)
T ss_dssp             HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence            78899999998 9999999999999987421       567788899999999999999999998864321      22 


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696          152 KAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       152 ~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~  185 (438)
                      ..++..+.|+...|++..|...+++....+|...
T Consensus       197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFA  230 (282)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence            3467788899999999999999999999998654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.40  E-value=6.7e-06  Score=79.84  Aligned_cols=125  Identities=14%  Similarity=0.079  Sum_probs=60.1

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc--cHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK--KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  136 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g--~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA  136 (438)
                      .+++++.|...+...-+.+++..-.  ....+++.+..|  +|.+|.-.|+......+. +..+..+|.|++.+|+|++|
T Consensus       143 ~~~R~dlA~k~l~~~~~~~eD~~l~--qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eA  220 (290)
T PF04733_consen  143 KMNRPDLAEKELKNMQQIDEDSILT--QLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEA  220 (290)
T ss_dssp             HTT-HHHHHHHHHHHHCCSCCHHHH--HHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCcHHHH--HHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHH
Confidence            4455555555555544444332222  122333333333  355555555555444433 55555555555555555555


Q ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHH
Q 013696          137 EDDCTEALNLDDRYIKAYSRRATARKELGKL-KESIEDSEFALRLEPQNQE  186 (438)
Q Consensus       137 ~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~-~eA~~~~~~al~l~P~~~~  186 (438)
                      +..+..++..+|.++.++.+++.+...+|+. +.+.+++.+....+|.++.
T Consensus       221 e~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~  271 (290)
T PF04733_consen  221 EELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL  271 (290)
T ss_dssp             HHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence            5555555555555555555555555555555 3344455555555555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.38  E-value=8.4e-06  Score=83.90  Aligned_cols=126  Identities=11%  Similarity=-0.017  Sum_probs=111.0

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      .+++.++|+.+++++|+..|.....  |..+|.++-.+++.+.|...|..+++..|+ ..+|..++..-.+.|+.-.|..
T Consensus       663 ~ld~~eeA~rllEe~lk~fp~f~Kl--~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~  740 (913)
T KOG0495|consen  663 YLDNVEEALRLLEEALKSFPDFHKL--WLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS  740 (913)
T ss_pred             HhhhHHHHHHHHHHHHHhCCchHHH--HHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence            6788899999999999999888888  668899999999999999999999999998 8888888888888889999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      .++++...+|.++..|.-.-.+-...|+.+.|.....+||+-.|++...
T Consensus       741 ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~L  789 (913)
T KOG0495|consen  741 ILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLL  789 (913)
T ss_pred             HHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchh
Confidence            9999999999998888888888888899999999999999988887654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=4.7e-06  Score=84.87  Aligned_cols=118  Identities=16%  Similarity=0.150  Sum_probs=100.3

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQE  135 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~e  135 (438)
                      ..|+|++|.....+.+...|+...+  ++..-.++++.++|++|+..    ++.++.    ....+..|+|.++++..++
T Consensus        24 ~~~e~e~a~k~~~Kil~~~pdd~~a--~~cKvValIq~~ky~~ALk~----ikk~~~~~~~~~~~fEKAYc~Yrlnk~De   97 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSIVPDDEDA--IRCKVVALIQLDKYEDALKL----IKKNGALLVINSFFFEKAYCEYRLNKLDE   97 (652)
T ss_pred             cchHHHHHHHHHHHHHhcCCCcHhh--HhhhHhhhhhhhHHHHHHHH----HHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence            6789999999999999999999998  55778889999999999844    444542    3344789999999999999


Q ss_pred             HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696          136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (438)
Q Consensus       136 A~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~  186 (438)
                      |+.+++   .+++.+......+|.+++++|+|++|+..|+..++-+-++.+
T Consensus        98 alk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d  145 (652)
T KOG2376|consen   98 ALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD  145 (652)
T ss_pred             HHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence            999999   667788889999999999999999999999999777655443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.37  E-value=1.8e-07  Score=89.54  Aligned_cols=97  Identities=31%  Similarity=0.521  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg  165 (438)
                      .+..+.-.+..|.++.||+.|..+|.++|. +.+|..+|.+++++++...|+.+|..|+.++|+..+.|-.+|.++..+|
T Consensus       117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg  196 (377)
T KOG1308|consen  117 KKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG  196 (377)
T ss_pred             HHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence            566777788999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCC
Q 013696          166 KLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       166 ~~~eA~~~~~~al~l~P~  183 (438)
                      ++.+|..+|..+.+++-+
T Consensus       197 ~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  197 NWEEAAHDLALACKLDYD  214 (377)
T ss_pred             chHHHHHHHHHHHhcccc
Confidence            999999999999999754

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.35  E-value=9.9e-07  Score=67.80  Aligned_cols=63  Identities=22%  Similarity=0.393  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhccC---CC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALS---PT-----AVAYANRAMAYLKLRRFQEAEDDCTEALNL  146 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~---p~-----~~~~~~la~~~~~l~~~~eA~~~~~~al~l  146 (438)
                      +..+.++|.+|+..|+|++|+.+|++++.+.   ++     +.++.++|.||..+|++++|+.++++++.+
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3447899999999999999999999999862   22     678999999999999999999999999875

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.35  E-value=3e-06  Score=82.91  Aligned_cols=131  Identities=18%  Similarity=0.150  Sum_probs=107.5

Q ss_pred             cCCCCCCcC-cCCCccchHHHHHhhhcCCCCC----hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC----CC---HH
Q 013696           51 AKKPSPSGN-SYSRNYDPVSHISSSLMNEEST----PDATSEKELGNECFKQKKFKEAIDCYSRSIALS----PT---AV  118 (438)
Q Consensus        51 ~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~----~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~----p~---~~  118 (438)
                      .+..+|..| .+|+|+.||...+.-|.+....    .+-.++-++|+++.-.|+++.|+++|.+.+.+.    ..   +.
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            566777776 8999999999988877764332    222336699999999999999999999877653    22   67


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhhcCC------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696          119 AYANRAMAYLKLRRFQEAEDDCTEALNLDD------RYIKAYSRRATARKELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       119 ~~~~la~~~~~l~~~~eA~~~~~~al~l~p------~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~  181 (438)
                      ..+.+|..|.-+.+|+.||.++.+-+.+..      ....+++.+|.++..+|..+.|+-+.+..+++.
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            789999999999999999999998876643      346789999999999999999999988888765

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.31  E-value=1.6e-05  Score=80.98  Aligned_cols=129  Identities=10%  Similarity=0.024  Sum_probs=106.0

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCH-HH-HHHHHHHHHHhcCHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTA-VA-YANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~-~~-~~~la~~~~~l~~~~eA~  137 (438)
                      -.|+|+.|.....+.-...+ .+.. .+...+......|+++.|..+|.++.+.+|+. .+ ....+..++..|+++.|+
T Consensus        96 ~eGd~~~A~k~l~~~~~~~~-~p~l-~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         96 AEGDYQQVEKLMTRNADHAE-QPVV-NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             hCCCHHHHHHHHHHHHhccc-chHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            56899999987777655432 2333 23444666699999999999999999999983 23 334589999999999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ  190 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  190 (438)
                      ..+++++..+|+++.++..++.+|...|++++|+..+.+..+..+.++....+
T Consensus       174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~  226 (398)
T PRK10747        174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAM  226 (398)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999888876654443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.28  E-value=1.8e-05  Score=68.64  Aligned_cols=90  Identities=18%  Similarity=0.056  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc---HHHHHHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRAT  159 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~---~~a~~~lg~  159 (438)
                      .+......+..+++..+...+...+.-+|+    ..+.+.+|.+++..|+|++|+..|..++...|+.   ..+.+++|.
T Consensus        14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~   93 (145)
T PF09976_consen   14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR   93 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            445555556789999999999999999887    5678889999999999999999999999987655   468999999


Q ss_pred             HHHHcCCHHHHHHHHHH
Q 013696          160 ARKELGKLKESIEDSEF  176 (438)
Q Consensus       160 a~~~lg~~~eA~~~~~~  176 (438)
                      ++...|+|++|+..++.
T Consensus        94 ~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   94 ILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHcCCHHHHHHHHHh
Confidence            99999999999999976

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.25  E-value=7.2e-06  Score=70.05  Aligned_cols=95  Identities=21%  Similarity=0.233  Sum_probs=83.3

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhH-HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcC-
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR-  132 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~-  132 (438)
                      +..|+|.+|+..++.+....|....+ .+...+|.+|++.|+|++|+..|.+-|+++|.    ..+++.+|++++.+.. 
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~  100 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG  100 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh
Confidence            46789999999999999988766432 33679999999999999999999999999997    7889999999999887 


Q ss_pred             --------------HHHHHHHHHHHhhcCCccHHH
Q 013696          133 --------------FQEAEDDCTEALNLDDRYIKA  153 (438)
Q Consensus       133 --------------~~eA~~~~~~al~l~p~~~~a  153 (438)
                                    ...|..+|.+.+...|++..+
T Consensus       101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen  101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence                          889999999999999987543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=1.3e-05  Score=76.16  Aligned_cols=106  Identities=19%  Similarity=0.116  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 013696          100 FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK---LKESIEDSE  175 (438)
Q Consensus       100 y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~---~~eA~~~~~  175 (438)
                      .+.-+.-.+.-++.+|+ +.-|..+|.+|+.+|++..|...|.+|+++.|+++..+..+|.+++...+   -.++...|+
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            56677778888999999 99999999999999999999999999999999999999999999887654   469999999


Q ss_pred             HHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhc
Q 013696          176 FALRLEPQNQEI----------KKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       176 ~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~  205 (438)
                      ++++++|.|..+          .+++.+|...++.-+...
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            999999999987          455566666666555443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=2e-05  Score=75.93  Aligned_cols=126  Identities=17%  Similarity=0.142  Sum_probs=92.9

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-PTAVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~-p~~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ...+|..|+..++-.+..+.... ......+|.|+|..|+|++|+..|+-+...+ +.+..+.|+|-|++.+|.|.+|..
T Consensus        34 s~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~  112 (557)
T KOG3785|consen   34 SNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS  112 (557)
T ss_pred             hcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence            67889999999988876653322 2224578999999999999999999988854 338899999999999999999877


Q ss_pred             HHHHHh--------------hcCC------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696          139 DCTEAL--------------NLDD------------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (438)
Q Consensus       139 ~~~~al--------------~l~p------------~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~  186 (438)
                      ...+|-              +++.            +...-...+|.+++..-.|++|++.|.++|.-+|....
T Consensus       113 ~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a  186 (557)
T KOG3785|consen  113 IAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA  186 (557)
T ss_pred             HHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            655542              2221            11223445667777777888888888888888776543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.24  E-value=5.2e-06  Score=75.00  Aligned_cols=100  Identities=20%  Similarity=0.127  Sum_probs=93.1

Q ss_pred             cCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHH
Q 013696           51 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL  128 (438)
Q Consensus        51 ~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~  128 (438)
                      .+...|..| +.|-..-|.-.|.+++.+.|..+.+  ++.+|..+...|+|+.|.+.|+..++++|. ..++.|+|..++
T Consensus        67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~v--fNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEV--FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHH--HHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            345667778 8899999999999999999999999  779999999999999999999999999999 889999999999


Q ss_pred             HhcCHHHHHHHHHHHhhcCCccHH
Q 013696          129 KLRRFQEAEDDCTEALNLDDRYIK  152 (438)
Q Consensus       129 ~l~~~~eA~~~~~~al~l~p~~~~  152 (438)
                      .-|+|.-|.+++.+-.+-||++|-
T Consensus       145 Y~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             ecCchHhhHHHHHHHHhcCCCChH
Confidence            999999999999999999999984

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.23  E-value=2e-05  Score=82.08  Aligned_cols=70  Identities=23%  Similarity=0.234  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       118 ~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      .+++.+|..|...|++++|+.+.++||...|..+..|+..|.++...|++.+|..+++.|-.+++.+.-+
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyi  264 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYI  264 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHH
Confidence            4668899999999999999999999999999999999999999999999999999999999999988655

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.21  E-value=3.1e-06  Score=82.02  Aligned_cols=129  Identities=18%  Similarity=0.146  Sum_probs=95.8

Q ss_pred             CCCCcC-cCCCccchHHHHHhhhcCC----CCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC-----CC--HHHHH
Q 013696           54 PSPSGN-SYSRNYDPVSHISSSLMNE----ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-----PT--AVAYA  121 (438)
Q Consensus        54 ~~~~~y-~~g~~~eAi~~~~~al~~~----p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~-----p~--~~~~~  121 (438)
                      ..|..| ..+++++|...|.++....    .....+..+...|.+| +..++.+|+.+|.+++.+.     +.  +.++.
T Consensus        40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~  118 (282)
T PF14938_consen   40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLK  118 (282)
T ss_dssp             HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            344456 6688999999999886533    1222344455555555 4559999999999999974     22  78899


Q ss_pred             HHHHHHHHh-cCHHHHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696          122 NRAMAYLKL-RRFQEAEDDCTEALNLDDR------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       122 ~la~~~~~l-~~~~eA~~~~~~al~l~p~------~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~  183 (438)
                      ++|.+|... |++++|+.+|.+|+.+...      -...+...|.++..+|+|++|+..|+++....-.
T Consensus       119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~  187 (282)
T PF14938_consen  119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE  187 (282)
T ss_dssp             HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence            999999999 9999999999999987321      2456788999999999999999999999876543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.20  E-value=1.1e-05  Score=67.11  Aligned_cols=90  Identities=17%  Similarity=0.175  Sum_probs=82.6

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHhcCHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQ  134 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~l~~~~  134 (438)
                      ..|+.+.|++.|.++|.+.|..+.+  |++.+..+.-+|+.++|+..+++++++...     ..+|..+|..|..+|+-+
T Consensus        55 E~g~Ld~AlE~F~qal~l~P~raSa--yNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd  132 (175)
T KOG4555|consen   55 EAGDLDGALELFGQALCLAPERASA--YNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD  132 (175)
T ss_pred             hccchHHHHHHHHHHHHhcccchHh--hccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence            6689999999999999999999988  789999999999999999999999998743     577999999999999999


Q ss_pred             HHHHHHHHHhhcCCccH
Q 013696          135 EAEDDCTEALNLDDRYI  151 (438)
Q Consensus       135 eA~~~~~~al~l~p~~~  151 (438)
                      .|..+|..|-++.....
T Consensus       133 ~AR~DFe~AA~LGS~FA  149 (175)
T KOG4555|consen  133 AARADFEAAAQLGSKFA  149 (175)
T ss_pred             HHHHhHHHHHHhCCHHH
Confidence            99999999998876553

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.18  E-value=9.9e-06  Score=71.47  Aligned_cols=87  Identities=15%  Similarity=0.170  Sum_probs=69.6

Q ss_pred             ccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc----------cHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC
Q 013696           64 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQK----------KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  132 (438)
Q Consensus        64 ~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g----------~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~  132 (438)
                      |+.|.+.++.....+|.+.++  +.+.|.++..+.          -+++|+.-|++||.++|+ ..+++++|.+|..++.
T Consensus         7 FE~ark~aea~y~~nP~Dadn--L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADN--LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHH--HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHH--HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            567888999999999999888  668888876653          467899999999999999 9999999999988764


Q ss_pred             -----------HHHHHHHHHHHhhcCCccHH
Q 013696          133 -----------FQEAEDDCTEALNLDDRYIK  152 (438)
Q Consensus       133 -----------~~eA~~~~~~al~l~p~~~~  152 (438)
                                 |++|..+|++|...+|++..
T Consensus        85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence                       88899999999999998853

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.12  E-value=2e-05  Score=76.58  Aligned_cols=130  Identities=14%  Similarity=0.041  Sum_probs=98.9

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc--CHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR--RFQEA  136 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~--~~~eA  136 (438)
                      ..|++++|+..+.+.     .+.++.+  ..-.+|.+.++++.|.+.+..+-+.+.+ ..+...-|.+.+..|  .+.+|
T Consensus       114 ~~~~~~~AL~~l~~~-----~~lE~~a--l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A  186 (290)
T PF04733_consen  114 HEGDYEEALKLLHKG-----GSLELLA--LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDA  186 (290)
T ss_dssp             CCCHHHHHHCCCTTT-----TCHHHHH--HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             HcCCHHHHHHHHHcc-----CcccHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHH
Confidence            568888888777654     3445533  6678899999999999999999888877 333344444555555  69999


Q ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (438)
Q Consensus       137 ~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  196 (438)
                      ...|+......+..+..+..+|.++..+|+|++|...+..++..+|.+++...++.-+-.
T Consensus       187 ~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~  246 (290)
T PF04733_consen  187 FYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL  246 (290)
T ss_dssp             HHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            999999888888899999999999999999999999999999999999987665544333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=4.4e-05  Score=72.15  Aligned_cols=144  Identities=15%  Similarity=0.139  Sum_probs=111.9

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ...+|.+||+++..-....|.+..+  +-.+|.||+...+|..|..||.+.-.+.|. ....+.-|..+++.+.|..|+.
T Consensus        22 ~d~ry~DaI~~l~s~~Er~p~~rAg--LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr   99 (459)
T KOG4340|consen   22 RDARYADAIQLLGSELERSPRSRAG--LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR   99 (459)
T ss_pred             HHhhHHHHHHHHHHHHhcCccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence            4567999999999999999888888  459999999999999999999999999999 6666666788888888877766


Q ss_pred             HHHHHh----------------hcC--------------C--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696          139 DCTEAL----------------NLD--------------D--RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (438)
Q Consensus       139 ~~~~al----------------~l~--------------p--~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~  186 (438)
                      ......                ...              |  +.+....+.|.+.++-|+|++|++-|+.+++...-++-
T Consensus       100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl  179 (459)
T KOG4340|consen  100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL  179 (459)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence            443332                111              2  34566788999999999999999999999999877665


Q ss_pred             H----------HHHHHHHHHHHHHHHhhc
Q 013696          187 I----------KKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       187 ~----------~~~l~~a~~~~~ka~~~~  205 (438)
                      .          .+++..|+....+.++..
T Consensus       180 lAYniALaHy~~~qyasALk~iSEIieRG  208 (459)
T KOG4340|consen  180 LAYNLALAHYSSRQYASALKHISEIIERG  208 (459)
T ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence            4          455556665555544443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.07  E-value=3.7e-05  Score=64.37  Aligned_cols=86  Identities=22%  Similarity=0.191  Sum_probs=74.2

Q ss_pred             cCCCccchHHHHHhhhcCCCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ  134 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~  134 (438)
                      ..|+.++|+.+|++++........ ...+..+|..+...|++++|+..+++++...|+    ..+...+++++..+|+++
T Consensus        13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~   92 (120)
T PF12688_consen   13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPK   92 (120)
T ss_pred             hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHH
Confidence            689999999999999997544332 345779999999999999999999999998886    556777899999999999


Q ss_pred             HHHHHHHHHhh
Q 013696          135 EAEDDCTEALN  145 (438)
Q Consensus       135 eA~~~~~~al~  145 (438)
                      +|+..+-.++.
T Consensus        93 eAl~~~l~~la  103 (120)
T PF12688_consen   93 EALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHH
Confidence            99999988874

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.00011  Score=75.25  Aligned_cols=146  Identities=18%  Similarity=0.116  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc
Q 013696           20 QDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK   98 (438)
Q Consensus        20 ~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g   98 (438)
                      +.++++++..++.+...         +.++.+++.-..+. .+++|++|+...+.-....-.   ....+..+.|.|+.+
T Consensus        26 ~e~e~a~k~~~Kil~~~---------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~---~~~~fEKAYc~Yrln   93 (652)
T KOG2376|consen   26 GEYEEAVKTANKILSIV---------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI---NSFFFEKAYCEYRLN   93 (652)
T ss_pred             hHHHHHHHHHHHHHhcC---------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc---chhhHHHHHHHHHcc
Confidence            46677777666666443         23344454444444 778888888655544332211   111368899999999


Q ss_pred             cHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC------------------------------
Q 013696           99 KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD------------------------------  147 (438)
Q Consensus        99 ~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~------------------------------  147 (438)
                      +.++|+.+++   .+++. ..+...+|.+++++++|++|+..|+..++.+                              
T Consensus        94 k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v  170 (652)
T KOG2376|consen   94 KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEV  170 (652)
T ss_pred             cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCC
Confidence            9999999998   34454 5577778999999999999999998886443                              


Q ss_pred             C-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696          148 D-RYIKAYSRRATARKELGKLKESIEDSEFALRL  180 (438)
Q Consensus       148 p-~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l  180 (438)
                      | +....+|+.|.++...|+|.+|++.+++++++
T Consensus       171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~  204 (652)
T KOG2376|consen  171 PEDSYELLYNTACILIENGKYNQAIELLEKALRI  204 (652)
T ss_pred             CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            1 13456899999999999999999999999655

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.97  E-value=0.00028  Score=62.59  Aligned_cols=116  Identities=16%  Similarity=0.195  Sum_probs=94.1

Q ss_pred             hHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhc-cCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 013696           67 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA-LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEAL  144 (438)
Q Consensus        67 Ai~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~-~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al  144 (438)
                      +.....+.+.+.|.   ....+.+|+.+...|+|.+|..+|.+++. +.-+ +..+..++.+.+..+++..|...++...
T Consensus        75 ~~Rea~~~~~~ApT---vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~  151 (251)
T COG4700          75 HLREATEELAIAPT---VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM  151 (251)
T ss_pred             HHHHHHHHHhhchh---HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence            33334444444443   33366899999999999999999999987 3444 7888899999999999999999999999


Q ss_pred             hcCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696          145 NLDDR--YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       145 ~l~p~--~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~  185 (438)
                      +.+|.  .+.....+|.++..+|++.+|...|+.++...|+-.
T Consensus       152 e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~  194 (251)
T COG4700         152 EYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ  194 (251)
T ss_pred             hcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence            98874  467788889999999999999999999999999753

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.97  E-value=0.00015  Score=81.83  Aligned_cols=118  Identities=13%  Similarity=0.033  Sum_probs=74.6

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhcCHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--PTAVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~--p~~~~~~~la~~~~~l~~~~eA~  137 (438)
                      ..|++++|+..|....... -.+....|..+...|.+.|++++|...+..+.+..  |+...|..+..+|.+.|++++|+
T Consensus       626 k~G~~deAl~lf~eM~~~G-v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~  704 (1060)
T PLN03218        626 QKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL  704 (1060)
T ss_pred             hcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence            5566677777766665532 11223335566666777777777777777766643  44666677777777777777777


Q ss_pred             HHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013696          138 DDCTEALNL--DDRYIKAYSRRATARKELGKLKESIEDSEFALR  179 (438)
Q Consensus       138 ~~~~~al~l--~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~  179 (438)
                      ..|+.....  .| +...|..+..+|...|++++|++.|++...
T Consensus       705 ~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~  747 (1060)
T PLN03218        705 ELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKR  747 (1060)
T ss_pred             HHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            777766543  33 355667777777777777777777776654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.93  E-value=8e-06  Score=52.28  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=27.9

Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESI  171 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~  171 (438)
                      +|++||+++|+++.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            367888888888888888888888888888885

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.93  E-value=1.8e-05  Score=50.36  Aligned_cols=32  Identities=34%  Similarity=0.488  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696          152 KAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       152 ~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~  183 (438)
                      .+|+++|.++..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.93  E-value=0.00025  Score=73.98  Aligned_cols=98  Identities=18%  Similarity=0.168  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~  162 (438)
                      .+.++.++..|-..|+|++|+.+.++||...|. +..|...|.+|-+.|++.+|..+.+.|..+|..+-..-...+..+.
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            456789999999999999999999999999999 9999999999999999999999999999999999888888899999


Q ss_pred             HcCCHHHHHHHHHHHHhhC
Q 013696          163 ELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       163 ~lg~~~eA~~~~~~al~l~  181 (438)
                      +.|++++|...+..-.+-+
T Consensus       274 Ra~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  274 RAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HCCCHHHHHHHHHhhcCCC
Confidence            9999999999987766555

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.92  E-value=1.7e-05  Score=50.53  Aligned_cols=34  Identities=38%  Similarity=0.473  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc
Q 013696          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY  150 (438)
Q Consensus       117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~  150 (438)
                      +.+|+++|.+|..+|++++|+.+|++|++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3567788888888888888888888888887764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.92  E-value=1e-05  Score=81.02  Aligned_cols=103  Identities=19%  Similarity=0.118  Sum_probs=94.6

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~  137 (438)
                      +..++|+.|+..|.++|.++|+.....+  +++.++.+.++|..|+....++|+++|. ..+|+.+|.++..++.|.+|.
T Consensus        15 l~~~~fd~avdlysKaI~ldpnca~~~a--nRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~   92 (476)
T KOG0376|consen   15 LKDKVFDVAVDLYSKAIELDPNCAIYFA--NRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL   92 (476)
T ss_pred             cccchHHHHHHHHHHHHhcCCcceeeec--hhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence            3668899999999999999999887744  8899999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHH
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARKE  163 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~~  163 (438)
                      .+|+....+.|+.+.+...+..|-..
T Consensus        93 ~~l~~~~~l~Pnd~~~~r~~~Ec~~~  118 (476)
T KOG0376|consen   93 LDLEKVKKLAPNDPDATRKIDECNKI  118 (476)
T ss_pred             HHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence            99999999999999987777766554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=3.5e-05  Score=70.62  Aligned_cols=86  Identities=16%  Similarity=0.100  Sum_probs=79.7

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~  137 (438)
                      |-...|..|+.+|.++|.++|..+.-  +.+.+.++++..+++.+.....++++++|+ ..+++.+|.+.+....|.+|+
T Consensus        21 f~~k~y~~ai~~y~raI~~nP~~~~Y--~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI   98 (284)
T KOG4642|consen   21 FIPKRYDDAIDCYSRAICINPTVASY--YTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI   98 (284)
T ss_pred             cchhhhchHHHHHHHHHhcCCCcchh--hhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence            35667999999999999999987766  669999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHhhc
Q 013696          138 DDCTEALNL  146 (438)
Q Consensus       138 ~~~~~al~l  146 (438)
                      ..+.+|..+
T Consensus        99 ~~Lqra~sl  107 (284)
T KOG4642|consen   99 KVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHH
Confidence            999999655

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.90  E-value=0.00065  Score=63.48  Aligned_cols=141  Identities=17%  Similarity=0.148  Sum_probs=113.1

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhH-HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhc--
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLR--  131 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~--  131 (438)
                      +..|++.+|+..|+......|..+.+ .+...++.++++.++|++|+...++-+.+.|.    ..+++.+|.+++..=  
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~  124 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD  124 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence            36799999999999999988877553 23679999999999999999999999999987    677899999987643  


Q ss_pred             ------CHHHHHHHHHHHhhcCCccHH---------------HH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696          132 ------RFQEAEDDCTEALNLDDRYIK---------------AY--SRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (438)
Q Consensus       132 ------~~~eA~~~~~~al~l~p~~~~---------------a~--~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~  188 (438)
                            --.+|+..+...+...|+..-               +.  ...|.-|.+.|.|-.|+.-++.+++-.|+.....
T Consensus       125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~  204 (254)
T COG4105         125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR  204 (254)
T ss_pred             cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence                  245788999999999987521               11  2356778899999999999999999998887766


Q ss_pred             HHHHHHHHHHH
Q 013696          189 KQLAEVKSLYE  199 (438)
Q Consensus       189 ~~l~~a~~~~~  199 (438)
                      ..+....+.|.
T Consensus       205 eaL~~l~eaY~  215 (254)
T COG4105         205 EALARLEEAYY  215 (254)
T ss_pred             HHHHHHHHHHH
Confidence            55555555554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.90  E-value=0.00038  Score=64.89  Aligned_cols=125  Identities=23%  Similarity=0.234  Sum_probs=107.6

Q ss_pred             cCCCccchHHHHHhhhcCC-CCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhc----cCCC---HHHHHHHHHHHHHhc
Q 013696           60 SYSRNYDPVSHISSSLMNE-ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA----LSPT---AVAYANRAMAYLKLR  131 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~-p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~----~~p~---~~~~~~la~~~~~l~  131 (438)
                      ..+.|.-....+.+.++.+ |..+..  ...+|...++.|+.+.|-.+|++.-+    ++..   .....|.+.+|+..+
T Consensus       189 G~kEy~iS~d~~~~vi~~~~e~~p~L--~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n  266 (366)
T KOG2796|consen  189 GMKEYVLSVDAYHSVIKYYPEQEPQL--LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN  266 (366)
T ss_pred             cchhhhhhHHHHHHHHHhCCcccHHH--HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheeccc
Confidence            5577888899999999977 444445  55899999999999999999985443    3322   566888899999999


Q ss_pred             CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696          132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (438)
Q Consensus       132 ~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~  186 (438)
                      +|.+|...|++++..||.++.+..+.|.|+.-+|+...|+...+.++...|...-
T Consensus       267 n~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l  321 (366)
T KOG2796|consen  267 NFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL  321 (366)
T ss_pred             chHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence            9999999999999999999999999999999999999999999999999997643

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.88  E-value=0.00026  Score=80.02  Aligned_cols=120  Identities=12%  Similarity=0.063  Sum_probs=65.3

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhcCHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~--~p~~~~~~~la~~~~~l~~~~eA~  137 (438)
                      ..|++++|...|.+...... .+....|..+...|.+.|++++|+..|......  .|+...|..+..+|.+.|++++|.
T Consensus       484 k~G~vd~A~~vf~eM~~~Gv-~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~  562 (1060)
T PLN03218        484 KSGKVDAMFEVFHEMVNAGV-EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF  562 (1060)
T ss_pred             hCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            55666666666666554321 122233555556666666666666666655443  344555666666666666666666


Q ss_pred             HHHHHHhh----cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696          138 DDCTEALN----LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       138 ~~~~~al~----l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~  181 (438)
                      +.+.....    +.|+ ...|..+-.+|.+.|++++|.+.|+...+.+
T Consensus       563 ~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~g  609 (1060)
T PLN03218        563 DVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYN  609 (1060)
T ss_pred             HHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            66665543    2232 3445555555556666666666666555544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.88  E-value=2.7e-05  Score=52.91  Aligned_cols=40  Identities=35%  Similarity=0.296  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 013696          119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA  158 (438)
Q Consensus       119 ~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg  158 (438)
                      ++..+|.+|..+|++++|+..|+++++.+|+++.+|..+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            4555555555555555555555555555555555555554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.86  E-value=0.00019  Score=78.50  Aligned_cols=176  Identities=13%  Similarity=0.073  Sum_probs=109.3

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHH
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE   89 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~   89 (438)
                      .|-+.+...+.++++.+-.++-.+ .           +...+..+..+| ..|+.++|++.|++..... -.++...+..
T Consensus       365 ~Li~~y~k~G~~~~A~~vf~~m~~-~-----------d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~  431 (697)
T PLN03081        365 ALVDLYSKWGRMEDARNVFDRMPR-K-----------NLISWNALIAGYGNHGRGTKAVEMFERMIAEG-VAPNHVTFLA  431 (697)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCCC-C-----------CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHH
Confidence            344555555666666655443221 0           122344455556 6778888888887766533 2233444666


Q ss_pred             HHHHHHHhccHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Q 013696           90 LGNECFKQKKFKEAIDCYSRSIAL---SPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK  166 (438)
Q Consensus        90 ~g~~~~~~g~y~~Ai~~y~~al~~---~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~  166 (438)
                      +-..+.+.|.+++|..+|....+.   .|+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|+
T Consensus       432 ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~  509 (697)
T PLN03081        432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKN  509 (697)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCC
Confidence            677777778888888777777642   355666777777777777777777776653 2333 34557777777777777


Q ss_pred             HHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHH
Q 013696          167 LKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKE  201 (438)
Q Consensus       167 ~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka  201 (438)
                      ++.|...+++++.+.|++...          .+++++|.+.++..
T Consensus       510 ~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m  554 (697)
T PLN03081        510 LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL  554 (697)
T ss_pred             cHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence            777777777777777765322          34555666655543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.85  E-value=7.6e-05  Score=75.32  Aligned_cols=101  Identities=30%  Similarity=0.252  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc---CHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~---~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~  162 (438)
                      ++..|+-.+-.+....|+..|.+++...|. ...|.|++.++++.+   +--.|+.+|..|++++|...++|++++.++.
T Consensus       377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~  456 (758)
T KOG1310|consen  377 FKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALN  456 (758)
T ss_pred             HHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHH
Confidence            667888888888899999999999999999 899999999998864   7778999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          163 ELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       163 ~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      .++++.+|+++...+.-..|.+...
T Consensus       457 el~r~~eal~~~~alq~~~Ptd~a~  481 (758)
T KOG1310|consen  457 ELTRYLEALSCHWALQMSFPTDVAR  481 (758)
T ss_pred             HHhhHHHhhhhHHHHhhcCchhhhh
Confidence            9999999999998887778866543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.82  E-value=4.8e-05  Score=48.21  Aligned_cols=33  Identities=39%  Similarity=0.483  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          152 KAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       152 ~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      .+|+.+|.++..+|++++|+.+|+++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            456667777777777777777777777776654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.81  E-value=0.00092  Score=59.33  Aligned_cols=120  Identities=23%  Similarity=0.308  Sum_probs=55.3

Q ss_pred             CCccchHHHHHhhhcCCCCChhHHHHHHHHH-HHHHhccHHHHHHHHHHHhccCC---C-HHHHHHHHHHHHHhcCHHHH
Q 013696           62 SRNYDPVSHISSSLMNEESTPDATSEKELGN-ECFKQKKFKEAIDCYSRSIALSP---T-AVAYANRAMAYLKLRRFQEA  136 (438)
Q Consensus        62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~-~~~~~g~y~~Ai~~y~~al~~~p---~-~~~~~~la~~~~~l~~~~eA  136 (438)
                      +++..++..+..++...+.......  ..+. ++...|+++.|+.+|.+++..+|   . ...+..++..+...+++..|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  186 (291)
T COG0457         109 GKYEEALELLEKALALDPDPDLAEA--LLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEA  186 (291)
T ss_pred             hhHHHHHHHHHHHHcCCCCcchHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHH
Confidence            3344444444444444433322211  2222 44455555555555555544443   1 33334444444444455555


Q ss_pred             HHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696          137 EDDCTEALNLDDR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       137 ~~~~~~al~l~p~-~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~  183 (438)
                      +..+.+++...+. ....+..++.++...+++..|+..+..++...|.
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         187 LELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            5555555555544 3444555555555555555555555555555444

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.78  E-value=0.00015  Score=79.17  Aligned_cols=180  Identities=13%  Similarity=-0.015  Sum_probs=128.4

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHH
Q 013696           13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELG   91 (438)
Q Consensus        13 ~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g   91 (438)
                      -..+..++.++++.+-....++....        .+......+...| +.|++++|...|++...  | +  ...|..+.
T Consensus       332 l~a~~~~g~~~~a~~i~~~m~~~g~~--------~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d--~~t~n~lI  398 (697)
T PLN03081        332 IRIFSRLALLEHAKQAHAGLIRTGFP--------LDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-N--LISWNALI  398 (697)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhCCC--------CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-C--eeeHHHHH
Confidence            34445566777766655554443311        1122333445556 88999999999998754  2 2  33488999


Q ss_pred             HHHHHhccHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC--ccHHHHHHHHHHHHHcCCH
Q 013696           92 NECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD--RYIKAYSRRATARKELGKL  167 (438)
Q Consensus        92 ~~~~~~g~y~~Ai~~y~~al~~--~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p--~~~~a~~~lg~a~~~lg~~  167 (438)
                      ..|.+.|++++|++.|.+....  .|+...|..+-.++.+.|.+++|...|+...+..+  .+...|..+..+|.+.|++
T Consensus       399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~  478 (697)
T PLN03081        399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL  478 (697)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence            9999999999999999998874  47788899999999999999999999999975322  2456788899999999999


Q ss_pred             HHHHHHHHHHHhhCCCCHHH---------HHHHHHHHHHHHHHHhhch
Q 013696          168 KESIEDSEFALRLEPQNQEI---------KKQLAEVKSLYEKEVFQKA  206 (438)
Q Consensus       168 ~eA~~~~~~al~l~P~~~~~---------~~~l~~a~~~~~ka~~~~~  206 (438)
                      ++|.+.+++. ...|+....         .++++.+...+++.+...+
T Consensus       479 ~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p  525 (697)
T PLN03081        479 DEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP  525 (697)
T ss_pred             HHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence            9999998764 344543211         3445566666666655554

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.78  E-value=0.00069  Score=60.16  Aligned_cols=124  Identities=27%  Similarity=0.342  Sum_probs=111.2

Q ss_pred             cCCCccchHHHHHhhhcCCCC-ChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEES-TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEA  136 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~-~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA  136 (438)
                      ..|+++.|+..|.+++...|. ......+...+..+...+++..|+..+.+++...+.  ...+.+++.++...+++..|
T Consensus       142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  221 (291)
T COG0457         142 ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEA  221 (291)
T ss_pred             HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHH
Confidence            889999999999999886663 334444667777788999999999999999999987  68899999999999999999


Q ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       137 ~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~  183 (438)
                      +..+..++...|.....+..++..+...|.+.+|...+.+++...|.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         222 LEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            99999999999998888899999988888899999999999999997

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.78  E-value=5.6e-05  Score=51.32  Aligned_cols=43  Identities=30%  Similarity=0.321  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013696          151 IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE  193 (438)
Q Consensus       151 ~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~  193 (438)
                      +.+|+.+|.+|..+|++++|+..|+++++.+|++++++..+.+
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3578999999999999999999999999999999999877654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.75  E-value=0.00054  Score=60.82  Aligned_cols=122  Identities=15%  Similarity=0.099  Sum_probs=103.1

Q ss_pred             CCCCcC-cCCCccchHHHHHhhhc-CCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC---HHHHHHHHHHHH
Q 013696           54 PSPSGN-SYSRNYDPVSHISSSLM-NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYL  128 (438)
Q Consensus        54 ~~~~~y-~~g~~~eAi~~~~~al~-~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~  128 (438)
                      +++.+. ..|++.+|..+|.+++. +.-+++..  +..+++..+..+++..|...++...+.+|.   +.....+|.+|-
T Consensus        94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~--lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la  171 (251)
T COG4700          94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAM--LLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA  171 (251)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHH--HHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence            344444 88999999999999987 33344444  779999999999999999999999999987   777788899999


Q ss_pred             HhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013696          129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL  178 (438)
Q Consensus       129 ~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al  178 (438)
                      .+|++..|+..|+.++...|+ +.+..+.|..+..+|+..+|..-+..+.
T Consensus       172 a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         172 AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            999999999999999998875 6777888999999999988877665554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.69  E-value=0.0015  Score=61.02  Aligned_cols=102  Identities=16%  Similarity=0.081  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccH---HHHHH
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI---KAYSR  156 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~---~a~~~  156 (438)
                      +..|+..|...++.|+|.+|+..|+......|.    ..+...++.++++.++|++|+...++-+.+.|+++   .++|.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            455899999999999999999999999999887    78899999999999999999999999999999775   46888


Q ss_pred             HHHHHHHcC--------CHHHHHHHHHHHHhhCCCCH
Q 013696          157 RATARKELG--------KLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       157 lg~a~~~lg--------~~~eA~~~~~~al~l~P~~~  185 (438)
                      +|.++...=        -..+|+..|...+.-.|+..
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence            898876542        24689999999999999875

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.67  E-value=8.7e-05  Score=46.97  Aligned_cols=33  Identities=30%  Similarity=0.383  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc
Q 013696          118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY  150 (438)
Q Consensus       118 ~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~  150 (438)
                      .+|+.+|.+|+.+|+|++|+.+|++++.++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            456677777777777777777777777777654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.00028  Score=67.79  Aligned_cols=98  Identities=26%  Similarity=0.323  Sum_probs=84.6

Q ss_pred             CCCCCcC-cCCCccchHHHHHhhhcCCCCC--hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHH
Q 013696           53 KPSPSGN-SYSRNYDPVSHISSSLMNEEST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL  128 (438)
Q Consensus        53 ~~~~~~y-~~g~~~eAi~~~~~al~~~p~~--~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~  128 (438)
                      +.-|+.| ...+|..|+..|.+.|+..-.+  ..+..|.+++.+.+..|+|..||....+++.++|. ..+|+.-|.|++
T Consensus        85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~  164 (390)
T KOG0551|consen   85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLL  164 (390)
T ss_pred             HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHH
Confidence            4455555 7889999999999999865333  33555889999999999999999999999999999 999999999999


Q ss_pred             HhcCHHHHHHHHHHHhhcCCcc
Q 013696          129 KLRRFQEAEDDCTEALNLDDRY  150 (438)
Q Consensus       129 ~l~~~~eA~~~~~~al~l~p~~  150 (438)
                      .+.++.+|..+|+..++++...
T Consensus       165 eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  165 ELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHH
Confidence            9999999999999998876544

>PLN03077 Protein ECB2; Provisional

Probab=97.62  E-value=0.00061  Score=76.32  Aligned_cols=90  Identities=14%  Similarity=0.079  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC--ccHHHHHHHHHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD--RYIKAYSRRATARK  162 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~--~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p--~~~~a~~~lg~a~~  162 (438)
                      |..+...|.+.|+.++|+..|++..+.  .|+...|..+-.++.+.|.+++|...|+......+  -+...|..+..++.
T Consensus       557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~  636 (857)
T PLN03077        557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG  636 (857)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence            444444555555555555555544432  23333344443444444555555555544442111  12334444444455


Q ss_pred             HcCCHHHHHHHHHH
Q 013696          163 ELGKLKESIEDSEF  176 (438)
Q Consensus       163 ~lg~~~eA~~~~~~  176 (438)
                      +.|++++|.+.+++
T Consensus       637 r~G~~~eA~~~~~~  650 (857)
T PLN03077        637 RAGKLTEAYNFINK  650 (857)
T ss_pred             hCCCHHHHHHHHHH
Confidence            55555555444443

>PLN03077 Protein ECB2; Provisional

Probab=97.61  E-value=0.0006  Score=76.39  Aligned_cols=162  Identities=8%  Similarity=0.046  Sum_probs=123.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcC--CCCChhHHHH
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMN--EESTPDATSE   87 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~--~p~~~~a~~~   87 (438)
                      .|-+.+...++++++.+..+..    .+         +...+..+-.+| ..|+.++|+..|++....  .|+..   .+
T Consensus       529 aLi~~y~k~G~~~~A~~~f~~~----~~---------d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~---T~  592 (857)
T PLN03077        529 ALLDLYVRCGRMNYAWNQFNSH----EK---------DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV---TF  592 (857)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhc----CC---------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc---cH
Confidence            4556666677777777655442    11         222444555667 889999999999987763  34433   35


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 013696           88 KELGNECFKQKKFKEAIDCYSRSIA---LSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL  164 (438)
Q Consensus        88 ~~~g~~~~~~g~y~~Ai~~y~~al~---~~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l  164 (438)
                      ..+-..|.+.|.+++|..+|.....   +.|+...|..+..+|.+.|++++|.+.+++. .+.|+ +..|..+-.++...
T Consensus       593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~  670 (857)
T PLN03077        593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIH  670 (857)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHc
Confidence            5666789999999999999999884   3577888999999999999999999999875 35565 56777777788889


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHH
Q 013696          165 GKLKESIEDSEFALRLEPQNQEIKKQ  190 (438)
Q Consensus       165 g~~~eA~~~~~~al~l~P~~~~~~~~  190 (438)
                      |+.+.|....+++++++|++....-.
T Consensus       671 ~~~e~~e~~a~~l~~l~p~~~~~y~l  696 (857)
T PLN03077        671 RHVELGELAAQHIFELDPNSVGYYIL  696 (857)
T ss_pred             CChHHHHHHHHHHHhhCCCCcchHHH
Confidence            99999999999999999998766433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.60  E-value=0.0012  Score=66.65  Aligned_cols=105  Identities=22%  Similarity=0.127  Sum_probs=93.5

Q ss_pred             HHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH
Q 013696           92 NECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI  171 (438)
Q Consensus        92 ~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~  171 (438)
                      ..+...++|+.|+..+++..+.+|..  ...++.+++..++..+|+....+++...|.+...+...|..+...|+++.|+
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL  254 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL  254 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            34455689999999999999999873  3447889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013696          172 EDSEFALRLEPQNQEIKKQLAEVKSLY  198 (438)
Q Consensus       172 ~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (438)
                      ...+++..+.|++...|..+.++....
T Consensus       255 ~iAk~av~lsP~~f~~W~~La~~Yi~~  281 (395)
T PF09295_consen  255 EIAKKAVELSPSEFETWYQLAECYIQL  281 (395)
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence            999999999999999998888777543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.59  E-value=0.00018  Score=69.81  Aligned_cols=129  Identities=17%  Similarity=0.172  Sum_probs=106.7

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCCCh----hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----------HH
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----------AV  118 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~----~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----------~~  118 (438)
                      +|.++ .++.|+++++.|+.+++...++.    +...+..+|..|-...+|++|+-+..+|.++...           ..
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~  207 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM  207 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence            56666 78899999999999998653332    3344678999999999999999999999887422           46


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhhcC------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696          119 AYANRAMAYLKLRRFQEAEDDCTEALNLD------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       119 ~~~~la~~~~~l~~~~eA~~~~~~al~l~------p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~  183 (438)
                      +++.++.++..+|+...|.++|+.+.++.      +.+.....-+|.+|...|+.+.|..-|+.|+..-..
T Consensus       208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~  278 (518)
T KOG1941|consen  208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS  278 (518)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence            78889999999999999999999998764      345566788999999999999999999999877543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.59  E-value=5.5e-05  Score=48.34  Aligned_cols=32  Identities=44%  Similarity=0.740  Sum_probs=23.8

Q ss_pred             HHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696          106 CYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus       106 ~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~  137 (438)
                      +|+++|+++|+ +.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            36777777777 777777777777777777765

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.00062  Score=62.88  Aligned_cols=103  Identities=18%  Similarity=0.208  Sum_probs=85.7

Q ss_pred             CCCCCc-CcCCCccchHHHHHhhhc--------CCCCChhH--------HHHHHHHHHHHHhccHHHHHHHHHHHhccCC
Q 013696           53 KPSPSG-NSYSRNYDPVSHISSSLM--------NEESTPDA--------TSEKELGNECFKQKKFKEAIDCYSRSIALSP  115 (438)
Q Consensus        53 ~~~~~~-y~~g~~~eAi~~~~~al~--------~~p~~~~a--------~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p  115 (438)
                      ..-|+. |..|+|.+|...|..|+.        ..|..++-        -.+.+...|+...|+|-+++++....+...|
T Consensus       182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~  261 (329)
T KOG0545|consen  182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP  261 (329)
T ss_pred             HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence            344444 699999999999998865        23444331        1156889999999999999999999999999


Q ss_pred             C-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHH
Q 013696          116 T-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS  155 (438)
Q Consensus       116 ~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~  155 (438)
                      . ..+|+.+|.++...-+..+|..++..++.++|.-..+..
T Consensus       262 ~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs  302 (329)
T KOG0545|consen  262 GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS  302 (329)
T ss_pred             chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence            9 999999999999999999999999999999998765543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.55  E-value=0.00076  Score=75.88  Aligned_cols=123  Identities=12%  Similarity=0.032  Sum_probs=99.8

Q ss_pred             cCCCccchHHHHHhhhcCCCCCh---hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLK  129 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~---~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~  129 (438)
                      ..|++++|...+++++...+...   .+..+..+|..+...|++++|...+.+++.....       ..++.++|.+++.
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            78999999999999988544322   2334678899999999999999999999976432       4567889999999


Q ss_pred             hcCHHHHHHHHHHHhhcCCc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696          130 LRRFQEAEDDCTEALNLDDR--------YIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (438)
Q Consensus       130 l~~~~eA~~~~~~al~l~p~--------~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P  182 (438)
                      .|++++|...+.+++.+...        ....+..+|.++...|++++|...+.+++.+..
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence            99999999999999876321        233466789999999999999999999988743

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.53  E-value=0.0032  Score=58.98  Aligned_cols=88  Identities=26%  Similarity=0.336  Sum_probs=53.0

Q ss_pred             ccHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013696           98 KKFKEAIDCYSRSIAL-SPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF  176 (438)
Q Consensus        98 g~y~~Ai~~y~~al~~-~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~  176 (438)
                      +++.+|.-.|+..-+. .|.+......+.|++.+++|++|...++.|+..+++++..+.++-.+-..+|+-.++...+-.
T Consensus       187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~  266 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS  266 (299)
T ss_pred             hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            3466666666665553 334666666666666666666666666666666666666666666666666666555554444


Q ss_pred             HHhh-CCCCH
Q 013696          177 ALRL-EPQNQ  185 (438)
Q Consensus       177 al~l-~P~~~  185 (438)
                      -++. .|..+
T Consensus       267 QLk~~~p~h~  276 (299)
T KOG3081|consen  267 QLKLSHPEHP  276 (299)
T ss_pred             HHHhcCCcch
Confidence            3333 34443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.53  E-value=0.00017  Score=73.70  Aligned_cols=107  Identities=21%  Similarity=0.206  Sum_probs=95.7

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696           88 KELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (438)
Q Consensus        88 ~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg  165 (438)
                      +.-|....-.|+...|+.|+.+|+...|.  -....++|.++++-+-...|-..+.+++.+....+-.++.+|.++..+.
T Consensus       611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~  690 (886)
T KOG4507|consen  611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK  690 (886)
T ss_pred             ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence            34444455689999999999999999998  6678999999999999999999999999999888999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013696          166 KLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (438)
Q Consensus       166 ~~~eA~~~~~~al~l~P~~~~~~~~l~~a  194 (438)
                      +.+.|++.|+.|+.++|+++.....+..+
T Consensus       691 ~i~~a~~~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  691 NISGALEAFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             hhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            99999999999999999999987776544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.52  E-value=0.0026  Score=63.85  Aligned_cols=146  Identities=15%  Similarity=0.114  Sum_probs=125.4

Q ss_pred             cCCCccchHHHHHhhhcCCCCChh--HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~--a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~  137 (438)
                      ...+.+.+...|+.+|.+-|+..-  +-.|...|....++.+...|-..+..||...|...++-..-..-+++++++.+.
T Consensus       378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcR  457 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCR  457 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHH
Confidence            457889999999999998886533  444778888889999999999999999999999777766667778899999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHH-----------HHHHHHHHHHHHHHHhhc
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP-QNQEI-----------KKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P-~~~~~-----------~~~l~~a~~~~~ka~~~~  205 (438)
                      ..|++-|..+|.+..+|...|..-..+|+.+.|...|+-|+.... +.+++           .++++.+..+|++.+...
T Consensus       458 kLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt  537 (677)
T KOG1915|consen  458 KLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT  537 (677)
T ss_pred             HHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999886643 22333           678899999999887765

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.47  E-value=0.0012  Score=68.48  Aligned_cols=104  Identities=14%  Similarity=0.032  Sum_probs=81.8

Q ss_pred             CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHhcCHHHH
Q 013696           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEA  136 (438)
Q Consensus        62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~l~~~~eA  136 (438)
                      .....|...+.......|+....  +...|..+...|+.++|++.|++++.....     ...++.+|.|+..+.+|++|
T Consensus       247 ~~~~~a~~lL~~~~~~yP~s~lf--l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPNSALF--LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            34566778888888888876665  668899999999999999999998864433     56688899999999999999


Q ss_pred             HHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCH
Q 013696          137 EDDCTEALNLDDR-YIKAYSRRATARKELGKL  167 (438)
Q Consensus       137 ~~~~~~al~l~p~-~~~a~~~lg~a~~~lg~~  167 (438)
                      ..++.+..+.+.- ..-..|..|.|+..+|+.
T Consensus       325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            9999999886543 233456678888888887

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.0027  Score=58.33  Aligned_cols=171  Identities=11%  Similarity=0.053  Sum_probs=119.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHH--HhhcCCCCCccccccccccCCCCCCcCcCCCccchHHHHHhhhcCCCCChh----HH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKK--MKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTPD----AT   85 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~y~~g~~~eAi~~~~~al~~~p~~~~----a~   85 (438)
                      -.+.++--++|..+=....+.  +....     +........+...+.+|+.++..+|+.++++++.+.-+...    +.
T Consensus        40 Aan~yklaK~w~~AG~aflkaA~~h~k~-----~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk  114 (288)
T KOG1586|consen   40 AANMYKLAKNWSAAGDAFLKAADLHLKA-----GSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAK  114 (288)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhc-----CCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence            356777778888764433222  22111     01111222345566778888999999999999997654432    33


Q ss_pred             HHHHHHHHHHHh-ccHHHHHHHHHHHhccCCC--H-----HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccH------
Q 013696           86 SEKELGNECFKQ-KKFKEAIDCYSRSIALSPT--A-----VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI------  151 (438)
Q Consensus        86 ~~~~~g~~~~~~-g~y~~Ai~~y~~al~~~p~--~-----~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~------  151 (438)
                      .+..+|..|-.. .++++||.+|+.+-+....  .     .++...|..-..+++|.+|+..|++.....-++.      
T Consensus       115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~  194 (288)
T KOG1586|consen  115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA  194 (288)
T ss_pred             hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence            466888888777 8999999999999887654  2     2334445555668899999999999887655442      


Q ss_pred             H-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          152 K-AYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       152 ~-a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      + .++.-|.|+...++.-.+...+++...++|.....
T Consensus       195 KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  195 KDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             HHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence            2 35566788888899999999999999999987554

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.35  E-value=7e-05  Score=72.11  Aligned_cols=89  Identities=21%  Similarity=0.141  Sum_probs=82.1

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~  137 (438)
                      |..|.++.|++.|..++.++|.....  +..+|.++.+.++...|+..|..++.++|+ +.-|-.+|.+...+|+|++|-
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~l--~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa  202 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAIL--YAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA  202 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhhh--cccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence            57788999999999999999988877  559999999999999999999999999999 777888999999999999999


Q ss_pred             HHHHHHhhcCCc
Q 013696          138 DDCTEALNLDDR  149 (438)
Q Consensus       138 ~~~~~al~l~p~  149 (438)
                      .++..+.+++-+
T Consensus       203 ~dl~~a~kld~d  214 (377)
T KOG1308|consen  203 HDLALACKLDYD  214 (377)
T ss_pred             HHHHHHHhcccc
Confidence            999999988754

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.26  E-value=0.0073  Score=52.09  Aligned_cols=91  Identities=24%  Similarity=0.156  Sum_probs=70.0

Q ss_pred             HHHHHHHHhccHHHHHHHHHHHhccCCC-----------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696           89 ELGNECFKQKKFKEAIDCYSRSIALSPT-----------------------AVAYANRAMAYLKLRRFQEAEDDCTEALN  145 (438)
Q Consensus        89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----------------------~~~~~~la~~~~~l~~~~eA~~~~~~al~  145 (438)
                      ..|......|+...++..+.+++.+...                       ..+...++..+...|++++|+..+.+++.
T Consensus        11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~   90 (146)
T PF03704_consen   11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA   90 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence            3455556677778888888888877422                       13445567788889999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013696          146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALR  179 (438)
Q Consensus       146 l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~  179 (438)
                      ++|.+-.+|..+-.+|...|++.+|+..|+++.+
T Consensus        91 ~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   91 LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999987743

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.25  E-value=0.004  Score=58.38  Aligned_cols=128  Identities=16%  Similarity=0.082  Sum_probs=99.6

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh----cCHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKL----RRFQE  135 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l----~~~~e  135 (438)
                      ..|++++|.........     .++.+  .--+++.++.+.+-|.....+..+++.+ ..+..+|.+|.++    +.+..
T Consensus       120 ~~~~~deAl~~~~~~~~-----lE~~A--l~VqI~lk~~r~d~A~~~lk~mq~ided-~tLtQLA~awv~la~ggek~qd  191 (299)
T KOG3081|consen  120 HDGDFDEALKALHLGEN-----LEAAA--LNVQILLKMHRFDLAEKELKKMQQIDED-ATLTQLAQAWVKLATGGEKIQD  191 (299)
T ss_pred             cCCChHHHHHHHhccch-----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhccchhhhh
Confidence            77889999988877433     33544  4467888899999999999998888765 2233344444332    36888


Q ss_pred             HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013696          136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (438)
Q Consensus       136 A~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  195 (438)
                      |.-.|+..-...|..+......+.|+..+|+|++|...++.+|.-++++++.+.++--+.
T Consensus       192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a  251 (299)
T KOG3081|consen  192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA  251 (299)
T ss_pred             HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            999999998877788999999999999999999999999999999999998876654433

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.23  E-value=0.0061  Score=50.15  Aligned_cols=92  Identities=23%  Similarity=0.302  Sum_probs=70.8

Q ss_pred             HHHHHHHHhccHHHHHHHHHHHhccC---CC----------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-------CC
Q 013696           89 ELGNECFKQKKFKEAIDCYSRSIALS---PT----------AVAYANRAMAYLKLRRFQEAEDDCTEALNL-------DD  148 (438)
Q Consensus        89 ~~g~~~~~~g~y~~Ai~~y~~al~~~---p~----------~~~~~~la~~~~~l~~~~eA~~~~~~al~l-------~p  148 (438)
                      ..|.-.+..|-|++|...|++++...   |.          +.++..++.++..+|+|++++....++|..       +.
T Consensus        14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q   93 (144)
T PF12968_consen   14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ   93 (144)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence            34555667889999999999999874   32          456788999999999999999888888744       34


Q ss_pred             cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696          149 RY----IKAYSRRATARKELGKLKESIEDSEFALRL  180 (438)
Q Consensus       149 ~~----~~a~~~lg~a~~~lg~~~eA~~~~~~al~l  180 (438)
                      +.    +.+.+++|.++..+|+.++|+..|+.+-..
T Consensus        94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            43    456788999999999999999999987643

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.21  E-value=0.00059  Score=43.14  Aligned_cols=32  Identities=34%  Similarity=0.488  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696          152 KAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       152 ~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~  183 (438)
                      .+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            35666666666666666666666666666663

...

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.0005  Score=66.64  Aligned_cols=110  Identities=28%  Similarity=0.363  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCC---C-----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSP---T-----------------AVAYANRAMAYLKLRRFQEAEDDCTEALNL  146 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p---~-----------------~~~~~~la~~~~~l~~~~eA~~~~~~al~l  146 (438)
                      .++.|+..++.++|..|..-|.+++..-.   .                 ...+.|++.|-++.+.+..|+..+..++..
T Consensus       225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~  304 (372)
T KOG0546|consen  225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD  304 (372)
T ss_pred             hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence            56788899999999999999988876421   0                 346778999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696          147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (438)
Q Consensus       147 ~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  196 (438)
                      ++...++++++|.++..+.++++|++++..+....|++..+...+..+..
T Consensus       305 ~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~  354 (372)
T KOG0546|consen  305 ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ  354 (372)
T ss_pred             ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999988666655544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.15  E-value=0.018  Score=58.06  Aligned_cols=145  Identities=11%  Similarity=0.090  Sum_probs=81.7

Q ss_pred             CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHH
Q 013696           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC  140 (438)
Q Consensus        62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~  140 (438)
                      +++..|...+++||..+-.+...  |...+.+-++.+....|-..+.+|+.+-|. -..|+..-..-..+|+...|.+.|
T Consensus        87 ~e~~RARSv~ERALdvd~r~itL--WlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif  164 (677)
T KOG1915|consen   87 KEIQRARSVFERALDVDYRNITL--WLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF  164 (677)
T ss_pred             HHHHHHHHHHHHHHhcccccchH--HHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            34445555555555555444443  334555555555555555555555555555 444544444445555555555555


Q ss_pred             HHHhhcCCc--------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-
Q 013696          141 TEALNLDDR--------------------------------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI-  187 (438)
Q Consensus       141 ~~al~l~p~--------------------------------~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~-  187 (438)
                      ++-+...|+                                .+.+|.+.+.--...|+...|...|++|+..-.++..+ 
T Consensus       165 erW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e  244 (677)
T KOG1915|consen  165 ERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAE  244 (677)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence            555555443                                24556666666667777777777777777766665544 


Q ss_pred             ------------HHHHHHHHHHHHHHHhhchhh
Q 013696          188 ------------KKQLAEVKSLYEKEVFQKASK  208 (438)
Q Consensus       188 ------------~~~l~~a~~~~~ka~~~~~~~  208 (438)
                                  ..+++.|.-.|.=|+..-+++
T Consensus       245 ~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~  277 (677)
T KOG1915|consen  245 ILFVAFAEFEERQKEYERARFIYKYALDHIPKG  277 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence                        445556666666666554443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.13  E-value=0.0058  Score=60.21  Aligned_cols=115  Identities=17%  Similarity=0.147  Sum_probs=80.6

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..|++++|.+....+++..-+ +..    ..=.-..+-+++..=++..++.+...|+ +.++..+|..|++.+.|.+|..
T Consensus       275 ~l~~~~~A~~~i~~~Lk~~~D-~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~  349 (400)
T COG3071         275 RLGDHDEAQEIIEDALKRQWD-PRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASE  349 (400)
T ss_pred             HcCChHHHHHHHHHHHHhccC-hhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHH
Confidence            667777888777777765422 222    1112334566777777777777777777 7777888888888888888888


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL  180 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l  180 (438)
                      +++.|+...|+ ...|..+|.++.++|+..+|.+.++.++.+
T Consensus       350 ~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         350 ALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            88888777664 455677788888888888888777777744

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.12  E-value=0.00047  Score=69.25  Aligned_cols=104  Identities=13%  Similarity=0.096  Sum_probs=68.2

Q ss_pred             CcCCCccchHHHHHhhh-cCC------CCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhc-c--------CCC------
Q 013696           59 NSYSRNYDPVSHISSSL-MNE------ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA-L--------SPT------  116 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al-~~~------p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~-~--------~p~------  116 (438)
                      |-.|+|..|...+...- ...      |.......|+++|.+++..|.|.-++.+|.+|++ .        .|.      
T Consensus       251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls  330 (696)
T KOG2471|consen  251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS  330 (696)
T ss_pred             HHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence            45677777777664431 112      2222344467888888888888888888888885 1        111      


Q ss_pred             ----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 013696          117 ----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (438)
Q Consensus       117 ----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~  162 (438)
                          ..+.||.|..|++.|+.-.|.++|.++.+....+|..|.|+|.|..
T Consensus       331 ~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  331 QNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             cccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence                3566677777777777777777777777776677777777776654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.10  E-value=0.0036  Score=44.23  Aligned_cols=39  Identities=18%  Similarity=0.279  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 013696          152 KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ  190 (438)
Q Consensus       152 ~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  190 (438)
                      ..+|.+|.++.++|+|.+|..+.+.+|+++|+|.++..-
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L   40 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL   40 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            357888899999999999999999999999999877543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.09  E-value=0.00074  Score=42.66  Aligned_cols=32  Identities=31%  Similarity=0.396  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc
Q 013696          118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDR  149 (438)
Q Consensus       118 ~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~  149 (438)
                      .+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            46777777777777777777777777777764

...

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.08  E-value=0.0065  Score=68.36  Aligned_cols=122  Identities=14%  Similarity=0.014  Sum_probs=97.4

Q ss_pred             cCCCccchHHHHHhhhcCCCC-------ChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC------HHHHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEES-------TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMA  126 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~-------~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~------~~~~~~la~~  126 (438)
                      ..|++++|...+..+....+.       .........+|..++..|++++|..++.+++...+.      ..++..+|.+
T Consensus       421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~  500 (903)
T PRK04841        421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV  500 (903)
T ss_pred             HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence            678999999999887653221       112333456788999999999999999999986544      3467889999


Q ss_pred             HHHhcCHHHHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696          127 YLKLRRFQEAEDDCTEALNLDDR------YIKAYSRRATARKELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       127 ~~~l~~~~eA~~~~~~al~l~p~------~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~  181 (438)
                      +...|++++|...+.+++.....      ...++..+|.++...|++++|...+++++.+.
T Consensus       501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  561 (903)
T PRK04841        501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI  561 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999876332      13467788999999999999999999999873

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=0.0017  Score=62.90  Aligned_cols=85  Identities=21%  Similarity=0.177  Sum_probs=73.4

Q ss_pred             HHHHhccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHH
Q 013696           93 ECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES  170 (438)
Q Consensus        93 ~~~~~g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA  170 (438)
                      .+....+|..|+..++-.+..+..  ...-..+|.|++++|+|++|+..|+.+..-+.-+.+.+.++|.+++-+|.|.+|
T Consensus        31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA  110 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA  110 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence            345678899999999888877655  466777899999999999999999999998878889999999999999999999


Q ss_pred             HHHHHHH
Q 013696          171 IEDSEFA  177 (438)
Q Consensus       171 ~~~~~~a  177 (438)
                      ...-.++
T Consensus       111 ~~~~~ka  117 (557)
T KOG3785|consen  111 KSIAEKA  117 (557)
T ss_pred             HHHHhhC
Confidence            8876554

>PRK10941 hypothetical protein; Provisional

Probab=97.06  E-value=0.006  Score=58.43  Aligned_cols=71  Identities=11%  Similarity=0.076  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      .....|+=.+|...++++.|+.+.+..+.++|+++.-+.-+|.+|.++|.+..|..+++..++..|+++.+
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a  251 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS  251 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence            46678888999999999999999999999999999999999999999999999999999999999999876

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.04  E-value=0.005  Score=59.99  Aligned_cols=157  Identities=15%  Similarity=0.079  Sum_probs=114.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHH----HhhhcCCCCChhHHHH
Q 013696           13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHI----SSSLMNEESTPDATSE   87 (438)
Q Consensus        13 ~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~----~~al~~~p~~~~a~~~   87 (438)
                      .+.-+.|..|.+.+...++.+..-.             .+.-+..+. ++|.|++++.+-    ..+...+.......++
T Consensus        20 ~~~~~al~~w~~~L~~l~~~~~Rf~-------------~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~   86 (518)
T KOG1941|consen   20 NQTEKALQVWTKVLEKLSDLMGRFR-------------VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY   86 (518)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH-------------HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566778888887777766654331             111122223 567777666544    3333344333444557


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHhccC---CC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc------HHHHH
Q 013696           88 KELGNECFKQKKFKEAIDCYSRSIALS---PT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYS  155 (438)
Q Consensus        88 ~~~g~~~~~~g~y~~Ai~~y~~al~~~---p~---~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~------~~a~~  155 (438)
                      .+++..+.+..++.+++.+-...+.+-   |.   ......+|.+++.++.|+.+++.|+.|+++...+      ...+.
T Consensus        87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv  166 (518)
T KOG1941|consen   87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV  166 (518)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence            889999999999999999988888763   32   4566779999999999999999999999886443      35688


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696          156 RRATARKELGKLKESIEDSEFALRLEP  182 (438)
Q Consensus       156 ~lg~a~~~lg~~~eA~~~~~~al~l~P  182 (438)
                      .+|..+..+.++++|..+..+|+.+--
T Consensus       167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~  193 (518)
T KOG1941|consen  167 SLGSLFAQLKDYEKALFFPCKAAELVN  193 (518)
T ss_pred             hHHHHHHHHHhhhHHhhhhHhHHHHHH
Confidence            999999999999999999999998853

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.02  E-value=0.012  Score=54.21  Aligned_cols=96  Identities=20%  Similarity=0.241  Sum_probs=68.8

Q ss_pred             HHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHh-cCHHHHHHHHHHHhhcCCc------cHHHHHHH
Q 013696           92 NECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKL-RRFQEAEDDCTEALNLDDR------YIKAYSRR  157 (438)
Q Consensus        92 ~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~l-~~~~eA~~~~~~al~l~p~------~~~a~~~l  157 (438)
                      ..+|+.++..+|+.|+.++|++..+       +..+..+|.+|..- .+++.|+.+|++|-.....      --+++..-
T Consensus        81 ~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKv  160 (288)
T KOG1586|consen   81 ANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKV  160 (288)
T ss_pred             HHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHH
Confidence            3344555888888888888888654       34456777777664 7888888888888765432      23556666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          158 ATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       158 g~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      |..-..+|+|.+|+..|+++.+-.-+|+-.
T Consensus       161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LL  190 (288)
T KOG1586|consen  161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLL  190 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence            666778889999999998888777666544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.95  E-value=0.0075  Score=64.82  Aligned_cols=124  Identities=14%  Similarity=0.005  Sum_probs=101.5

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      +-+++.+|+....+.++..|+...+.+  ..|..+++.|++++|..+++..-...++ ...+-.+-.||..++++++|..
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~v--LkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKV--LKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHH--HHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            668899999999999999999988866  6789999999999999887766666666 6777888899999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~  186 (438)
                      .|+++++.+|. -...+.+=.+|.+-+.|.+--+.--+..+.-|.++-
T Consensus        99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y  145 (932)
T KOG2053|consen   99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY  145 (932)
T ss_pred             HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            99999999999 777777777888888886554444444456666653

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.93  E-value=0.0099  Score=57.46  Aligned_cols=147  Identities=13%  Similarity=0.032  Sum_probs=114.4

Q ss_pred             CCcCcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc-CCC----HHHHHHHHHHHHHh
Q 013696           56 PSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-SPT----AVAYANRAMAYLKL  130 (438)
Q Consensus        56 ~~~y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~-~p~----~~~~~~la~~~~~l  130 (438)
                      +..+..|++-+|....++.|...|.+..+  ++.--.+++.+|+...-...+.+.+-. +++    ..+.-..+.++...
T Consensus       111 ai~~~~g~~h~a~~~wdklL~d~PtDlla--~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  111 AILWGRGKHHEAAIEWDKLLDDYPTDLLA--VKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC  188 (491)
T ss_pred             HHhhccccccHHHHHHHHHHHhCchhhhh--hhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence            33457788999999999999999987777  667778889999999999999998877 666    23344567888899


Q ss_pred             cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------CCHH--H-----HHHHHHHHH
Q 013696          131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP-------QNQE--I-----KKQLAEVKS  196 (438)
Q Consensus       131 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P-------~~~~--~-----~~~l~~a~~  196 (438)
                      |-|++|++..++++++++.+.-+.+..+.++...|++.++++...+.-..=.       .|-.  +     ..+++.|+.
T Consensus       189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale  268 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE  268 (491)
T ss_pred             ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence            9999999999999999999999999999999999999999988765322111       1100  0     356677777


Q ss_pred             HHHHHHhh
Q 013696          197 LYEKEVFQ  204 (438)
Q Consensus       197 ~~~ka~~~  204 (438)
                      .|.+.+..
T Consensus       269 IyD~ei~k  276 (491)
T KOG2610|consen  269 IYDREIWK  276 (491)
T ss_pred             HHHHHHHH
Confidence            77765543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.88  E-value=0.0098  Score=56.63  Aligned_cols=85  Identities=12%  Similarity=0.151  Sum_probs=77.3

Q ss_pred             HHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH
Q 013696           93 ECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI  171 (438)
Q Consensus        93 ~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~  171 (438)
                      .+.+..+|.+||++..--.+.+|. ...+..+|.||+...+|..|..+|++.-.+.|...+..+..|..+++.+.+..|+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            348899999999999999999997 7778999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHH
Q 013696          172 EDSEFA  177 (438)
Q Consensus       172 ~~~~~a  177 (438)
                      ......
T Consensus        99 rV~~~~  104 (459)
T KOG4340|consen   99 RVAFLL  104 (459)
T ss_pred             HHHHHh
Confidence            766543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.87  E-value=0.024  Score=50.95  Aligned_cols=118  Identities=14%  Similarity=0.038  Sum_probs=89.8

Q ss_pred             hHHHHHhhhcCCCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHH
Q 013696           67 PVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCT  141 (438)
Q Consensus        67 Ai~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~  141 (438)
                      .+...++....++.... ......++..++..+++++|+..++.++....+    +.+-.++|.+.+.+|.+++|+..++
T Consensus        71 ~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~  150 (207)
T COG2976          71 SIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLD  150 (207)
T ss_pred             hHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence            34444555555544333 334568889999999999999999999976554    6777889999999999999998777


Q ss_pred             HHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696          142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       142 ~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~  185 (438)
                      ..-.-+- .+.....+|.++...|+-++|+..|.+++..+++..
T Consensus       151 t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         151 TIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             ccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence            6543111 123367899999999999999999999999985543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.86  E-value=0.024  Score=63.76  Aligned_cols=186  Identities=13%  Similarity=0.043  Sum_probs=134.3

Q ss_pred             HHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcCcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHH
Q 013696           14 GFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNE   93 (438)
Q Consensus        14 ~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~   93 (438)
                      .|.-.+...|++-+-.+++|+..+........+ .=.++-.+-.  ..|.-+.-...|++|-+... ....  +..+.-+
T Consensus      1466 af~LelsEiekAR~iaerAL~tIN~REeeEKLN-iWiA~lNlEn--~yG~eesl~kVFeRAcqycd-~~~V--~~~L~~i 1539 (1710)
T KOG1070|consen 1466 AFHLELSEIEKARKIAERALKTINFREEEEKLN-IWIAYLNLEN--AYGTEESLKKVFERACQYCD-AYTV--HLKLLGI 1539 (1710)
T ss_pred             HHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHH-HHHHHHhHHH--hhCcHHHHHHHHHHHHHhcc-hHHH--HHHHHHH
Confidence            444455666666666777777665222211000 0001111111  22444555677777777552 2233  5678888


Q ss_pred             HHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc--cHHHHHHHHHHHHHcCCHHHH
Q 013696           94 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR--YIKAYSRRATARKELGKLKES  170 (438)
Q Consensus        94 ~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~--~~~a~~~lg~a~~~lg~~~eA  170 (438)
                      |.+.+++++|.++|+..++...+ ...|...|..++..++-+.|...+.+|++.-|.  +.......|..-++.|+.+.+
T Consensus      1540 y~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRG 1619 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERG 1619 (1710)
T ss_pred             HHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhh
Confidence            99999999999999999998876 888999999999999999999999999999887  788888999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHH----------HHHHHHHHHHHhhc
Q 013696          171 IEDSEFALRLEPQNQEIKKQL----------AEVKSLYEKEVFQK  205 (438)
Q Consensus       171 ~~~~~~al~l~P~~~~~~~~l----------~~a~~~~~ka~~~~  205 (438)
                      ...|+-.|.-+|.-.+.|.-|          ..++.+|++++.++
T Consensus      1620 RtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1620 RTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             HHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            999999999999887775444          45666788877765

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.80  E-value=0.022  Score=55.09  Aligned_cols=99  Identities=10%  Similarity=-0.037  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHH-hcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK-LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL  164 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~-l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l  164 (438)
                      |..+.+...+.+..+.|-..|.+|++..+. ..+|...|..-++ .++.+.|...|+.+++..|.+...|.....-+..+
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~   83 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            456667777777788888888888754444 6777777777555 45666688888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHhhCCCCH
Q 013696          165 GKLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       165 g~~~eA~~~~~~al~l~P~~~  185 (438)
                      |+.+.|...|++++..-|...
T Consensus        84 ~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   84 NDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             T-HHHHHHHHHHHCCTSSCHH
T ss_pred             CcHHHHHHHHHHHHHhcCchh
Confidence            888888888888888777665

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.79  E-value=0.0053  Score=61.89  Aligned_cols=126  Identities=13%  Similarity=0.025  Sum_probs=99.7

Q ss_pred             HhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHh-cc------CCC---HHHHHHHHHHHHHhcCHHHHHHHHH
Q 013696           72 SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSI-AL------SPT---AVAYANRAMAYLKLRRFQEAEDDCT  141 (438)
Q Consensus        72 ~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al-~~------~p~---~~~~~~la~~~~~l~~~~eA~~~~~  141 (438)
                      ..++.+..+.+.+  +...++.+|-.|+|..|.+.+...- ..      .|.   ...|.|+|-+++.++.|.-+..+|.
T Consensus       230 K~vmn~a~~s~~~--l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~  307 (696)
T KOG2471|consen  230 KHVMNIAQDSSMA--LLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFL  307 (696)
T ss_pred             hhhhhhcCCCcHH--HHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHH
Confidence            3444455555555  6688999999999999999875532 11      233   3457999999999999999999999


Q ss_pred             HHhh---------cCC---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696          142 EALN---------LDD---------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (438)
Q Consensus       142 ~al~---------l~p---------~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (438)
                      +|++         +.|         ......|+.|..|...|+.-.|.++|.++....-.+|..|-.+.++--+-.
T Consensus       308 kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~  383 (696)
T KOG2471|consen  308 KALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL  383 (696)
T ss_pred             HHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            9995         111         235679999999999999999999999999999999999999988765443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.75  E-value=0.011  Score=58.64  Aligned_cols=91  Identities=20%  Similarity=0.358  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHhccCCC-------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC
Q 013696           88 KELGNECFKQKKFKEAIDCYSRSIALSPT-------------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD  148 (438)
Q Consensus        88 ~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------------------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p  148 (438)
                      ..-|..+|++++|..|+.-|..+|++...                   ..+-..+..||+++++.+.|+....+.|.++|
T Consensus       180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP  259 (569)
T PF15015_consen  180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP  259 (569)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence            34566788899999998888888876321                   13456789999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013696          149 RYIKAYSRRATARKELGKLKESIEDSEFAL  178 (438)
Q Consensus       149 ~~~~a~~~lg~a~~~lg~~~eA~~~~~~al  178 (438)
                      .++..+.+.|.+...+.+|.+|..-+--+.
T Consensus       260 ~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  260 SYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987655443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.71  E-value=0.043  Score=53.08  Aligned_cols=121  Identities=13%  Similarity=0.073  Sum_probs=96.4

Q ss_pred             ccchHHHHHhhhcCCCCChhHHHHHHHHHHHHH-hccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHH
Q 013696           64 NYDPVSHISSSLMNEESTPDATSEKELGNECFK-QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT  141 (438)
Q Consensus        64 ~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~-~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~  141 (438)
                      .+.|...|.+++...+.....  |...|..-+. .++.+.|...|+++++..|. ...|......+..+++.+.|...|+
T Consensus        17 ~~~aR~vF~~a~~~~~~~~~v--y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfe   94 (280)
T PF05843_consen   17 IEAARKVFKRARKDKRCTYHV--YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFE   94 (280)
T ss_dssp             HHHHHHHHHHHHCCCCS-THH--HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            567889999998655444555  5577887666 57777799999999999998 7778777888899999999999999


Q ss_pred             HHhhcCCccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696          142 EALNLDDRYI---KAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (438)
Q Consensus       142 ~al~l~p~~~---~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~  186 (438)
                      +++..-+...   ..|-....--...|+.+.......++..+.|.+..
T Consensus        95 r~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~  142 (280)
T PF05843_consen   95 RAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS  142 (280)
T ss_dssp             HHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence            9998866554   57888888888899999999999999999988543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.69  E-value=0.025  Score=53.09  Aligned_cols=113  Identities=16%  Similarity=0.145  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHh----hcCC--ccHHHHHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEAL----NLDD--RYIKAYSRRA  158 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA~~~~~~al----~l~p--~~~~a~~~lg  158 (438)
                      .+.+..++...|.|.-.+..|.+.++.+|.  +.....+|.+.++.|+.+.|..+|+++-    .++.  .+.....+.+
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            456777888899999999999999999966  8889999999999999999999999543    3332  3345677788


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696          159 TARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (438)
Q Consensus       159 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (438)
                      .+|...++|.+|...|.+++..+|.++.+.+.-+-+.-++.
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg  300 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG  300 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence            88899999999999999999999999887544444443333

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.64  E-value=0.0037  Score=38.91  Aligned_cols=31  Identities=29%  Similarity=0.299  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696          153 AYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       153 a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~  183 (438)
                      +++++|.++..+|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5667777777777777777777777776665

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.58  E-value=0.066  Score=54.62  Aligned_cols=101  Identities=15%  Similarity=0.174  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-CCccHHHHHHHHHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNL-DDRYIKAYSRRATARK  162 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l~~~~eA~~~~~~al~l-~p~~~~a~~~lg~a~~  162 (438)
                      -..+|.|..+.|+.++||+.|+..++.+|.   ..++.|+..|++.++.|.++...+.+--.+ -|..+...|..|....
T Consensus       262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka  341 (539)
T PF04184_consen  262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA  341 (539)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence            457888888888888888888888887765   567888888888888888887777664322 1444555555544332


Q ss_pred             H-cCC---------------HHHHHHHHHHHHhhCCCCHHH
Q 013696          163 E-LGK---------------LKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       163 ~-lg~---------------~~eA~~~~~~al~l~P~~~~~  187 (438)
                      + .|+               -..|++.+.+|++.||..+..
T Consensus       342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y  382 (539)
T PF04184_consen  342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY  382 (539)
T ss_pred             HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence            2 111               123455566666666655443

The molecular function of this protein is uncertain.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.068  Score=51.10  Aligned_cols=136  Identities=15%  Similarity=0.063  Sum_probs=84.0

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHH--HHHHHhcCHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRA--MAYLKLRRFQEAE  137 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la--~~~~~l~~~~eA~  137 (438)
                      ..|++.+|...|..++...|.+..+  ...++.+|...|+.+.|...+...=.-.....+....+  ..+.......+ .
T Consensus       146 ~~e~~~~a~~~~~~al~~~~~~~~~--~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~-~  222 (304)
T COG3118         146 EAEDFGEAAPLLKQALQAAPENSEA--KLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE-I  222 (304)
T ss_pred             hccchhhHHHHHHHHHHhCcccchH--HHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC-H
Confidence            5566777777777777777777666  33777777777777776665543211111111111111  11111111111 2


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHH
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN--QEIKKQLAEVKSLY  198 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~--~~~~~~l~~a~~~~  198 (438)
                      ..+.+.+.-+|+++.+-+.+|..+...|++++|.+.+-..++.+-+.  ..+...+-+...++
T Consensus       223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~  285 (304)
T COG3118         223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAF  285 (304)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhc
Confidence            34566667789999999999999999999999999999999887543  44455554444443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.45  E-value=0.0057  Score=39.38  Aligned_cols=29  Identities=28%  Similarity=0.303  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696          153 AYSRRATARKELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       153 a~~~lg~a~~~lg~~~eA~~~~~~al~l~  181 (438)
                      +|.++|.+|..+|+|++|+.+|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            57888999999999999999999966543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.44  E-value=0.014  Score=41.21  Aligned_cols=43  Identities=19%  Similarity=0.219  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 013696          118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA  160 (438)
Q Consensus       118 ~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a  160 (438)
                      ..++.+|..+.++|+|.+|..+++.+++++|+|..+......+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            3577889999999999999999999999999998876555443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.44  E-value=0.12  Score=51.12  Aligned_cols=122  Identities=11%  Similarity=-0.000  Sum_probs=96.3

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEA  136 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA  136 (438)
                      +..|+|..|.....+.-+..+....+  +..-+.+.-..|+++.|-.+..++-+.-++  -..+..++...+..|++..|
T Consensus        95 l~eG~~~qAEkl~~rnae~~e~p~l~--~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA  172 (400)
T COG3071          95 LFEGDFQQAEKLLRRNAEHGEQPVLA--YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA  172 (400)
T ss_pred             HhcCcHHHHHHHHHHhhhcCcchHHH--HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence            35688888888888866655443333  445666777889999999999998888444  66677788888889999999


Q ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (438)
Q Consensus       137 ~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P  182 (438)
                      ......++...|.++........+|...|+|.+....+.+.-+-.-
T Consensus       173 ~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~  218 (400)
T COG3071         173 RENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGL  218 (400)
T ss_pred             HHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC
Confidence            9999999999999999988888899999999888888777665543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.35  E-value=0.051  Score=58.70  Aligned_cols=93  Identities=20%  Similarity=0.221  Sum_probs=84.5

Q ss_pred             HHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH
Q 013696           94 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE  172 (438)
Q Consensus        94 ~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~  172 (438)
                      ....+++..|+....+.++..|+ ..+...-|..+.++|++++|..+++..-...+++-..+--+-.+|..+|++++|..
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            35578899999999999999999 77888889999999999999988888878888888899999999999999999999


Q ss_pred             HHHHHHhhCCCCHHH
Q 013696          173 DSEFALRLEPQNQEI  187 (438)
Q Consensus       173 ~~~~al~l~P~~~~~  187 (438)
                      .|++++..+|+ .+.
T Consensus        99 ~Ye~~~~~~P~-eel  112 (932)
T KOG2053|consen   99 LYERANQKYPS-EEL  112 (932)
T ss_pred             HHHHHHhhCCc-HHH
Confidence            99999999999 444

>smart00028 TPR Tetratricopeptide repeats

Probab=96.33  E-value=0.0069  Score=36.27  Aligned_cols=27  Identities=44%  Similarity=0.538  Sum_probs=10.8

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 013696          121 ANRAMAYLKLRRFQEAEDDCTEALNLD  147 (438)
Q Consensus       121 ~~la~~~~~l~~~~eA~~~~~~al~l~  147 (438)
                      +++|.++..+++++.|+.++++++.++
T Consensus         5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~   31 (34)
T smart00028        5 YNLGNAYLKLGDYDEALEYYEKALELD   31 (34)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            333444444444444444444443333

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>smart00028 TPR Tetratricopeptide repeats

Probab=96.32  E-value=0.006  Score=36.56  Aligned_cols=33  Identities=36%  Similarity=0.449  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          152 KAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       152 ~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      .+|+++|.++..+|++++|+.+|+++++++|.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578999999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.32  E-value=0.086  Score=52.67  Aligned_cols=167  Identities=17%  Similarity=0.182  Sum_probs=102.4

Q ss_pred             HHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-c---CCCccchHHHHHhhhc-CCCCChhHHHHHH
Q 013696           15 FLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-S---YSRNYDPVSHISSSLM-NEESTPDATSEKE   89 (438)
Q Consensus        15 ~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~---~g~~~eAi~~~~~al~-~~p~~~~a~~~~~   89 (438)
                      .++++++|.. |...-+.+...+ ......   ........+-++ +   .|+.++|+..+..++. ..+.+++.  +-.
T Consensus       150 SyRdiqdyda-mI~Lve~l~~~p-~~~~~~---~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~--~gL  222 (374)
T PF13281_consen  150 SYRDIQDYDA-MIKLVETLEALP-TCDVAN---QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT--LGL  222 (374)
T ss_pred             HhhhhhhHHH-HHHHHHHhhccC-ccchhc---chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH--HHH
Confidence            5677888866 555566665553 110000   000001112222 3   6899999999999554 44555555  446


Q ss_pred             HHHHHHH---------hccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHh-------hcC----C
Q 013696           90 LGNECFK---------QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRR-FQEAEDDCTEAL-------NLD----D  148 (438)
Q Consensus        90 ~g~~~~~---------~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~-~~eA~~~~~~al-------~l~----p  148 (438)
                      .|.+|-.         ....++|+.+|.++.+++|+...--|++.++...|. ++...+.-.-++       +..    -
T Consensus       223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~  302 (374)
T PF13281_consen  223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM  302 (374)
T ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence            6666532         235789999999999999885555667777766664 322222111111       111    1


Q ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696          149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (438)
Q Consensus       149 ~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~  188 (438)
                      .+.-.+..++.+..-.|++++|++++++++++.|...+..
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~  342 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE  342 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence            2333455677888899999999999999999998776543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.26  E-value=0.066  Score=49.60  Aligned_cols=92  Identities=17%  Similarity=0.148  Sum_probs=65.7

Q ss_pred             HHHhccHHHHHHHHHHHhcc------CCC--HHHHHHHHHHHHHhcCHH-------HHHHHHHHHhhcCC------ccHH
Q 013696           94 CFKQKKFKEAIDCYSRSIAL------SPT--AVAYANRAMAYLKLRRFQ-------EAEDDCTEALNLDD------RYIK  152 (438)
Q Consensus        94 ~~~~g~y~~Ai~~y~~al~~------~p~--~~~~~~la~~~~~l~~~~-------eA~~~~~~al~l~p------~~~~  152 (438)
                      +-....+++|++.|.-|+-.      .+.  +.++..+|.+|..+|+.+       .|+..|.+++....      +...
T Consensus        87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~  166 (214)
T PF09986_consen   87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT  166 (214)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence            33345677777777766653      122  677888888888888844       45666666665442      2357


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696          153 AYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       153 a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~  185 (438)
                      ..|.+|.++..+|++++|+.+|.+++...-...
T Consensus       167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            889999999999999999999999997764443

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.26  E-value=0.019  Score=61.28  Aligned_cols=114  Identities=29%  Similarity=0.450  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHh--cCHHHHHHHHHHHhhcCCccHHHHHHH
Q 013696           85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKL--RRFQEAEDDCTEALNLDDRYIKAYSRR  157 (438)
Q Consensus        85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~l--~~~~eA~~~~~~al~l~p~~~~a~~~l  157 (438)
                      ...+..|+..+..++|..|.--|..++.+-|.     +....+.+.||..+  ++|..++..|.-|+...|...++++.+
T Consensus        54 ~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r  133 (748)
T KOG4151|consen   54 LELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKR  133 (748)
T ss_pred             HHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhh
Confidence            33668899999999999999999999999885     66678888888765  599999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013696          158 ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (438)
Q Consensus       158 g~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (438)
                      +.+|..+++++-|+.++.-.....|.+..+...+.+....|
T Consensus       134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll  174 (748)
T KOG4151|consen  134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL  174 (748)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999988877666666665

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.21  E-value=0.044  Score=57.12  Aligned_cols=95  Identities=19%  Similarity=0.105  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  159 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~  159 (438)
                      +.+.|...|+..+|..+++.|...+...|.       +....+++.||+++.+.+.|.+.+..|-+.+|.++-..+..-.
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            567788889999999999999999987765       6778899999999999999999999999999999988888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhC
Q 013696          160 ARKELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       160 a~~~lg~~~eA~~~~~~al~l~  181 (438)
                      +...-|+-.+|+.+..+.....
T Consensus       437 ~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  437 SFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHhcchHHHHHHHHHHHhhh
Confidence            8888999999999988777554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.19  E-value=0.0079  Score=37.34  Aligned_cols=31  Identities=23%  Similarity=0.200  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc
Q 013696          119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDR  149 (438)
Q Consensus       119 ~~~~la~~~~~l~~~~eA~~~~~~al~l~p~  149 (438)
                      +++++|.||..+|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3445555555555555555555555554443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.18  E-value=0.14  Score=53.25  Aligned_cols=122  Identities=11%  Similarity=-0.015  Sum_probs=93.3

Q ss_pred             CCccchHHHHHhhhcCCCCChhHHH-----HHHHHHHH-H----HhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh
Q 013696           62 SRNYDPVSHISSSLMNEESTPDATS-----EKELGNEC-F----KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  130 (438)
Q Consensus        62 g~~~eAi~~~~~al~~~p~~~~a~~-----~~~~g~~~-~----~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l  130 (438)
                      ||-+.++..+.++.... +.....+     .+..+... +    .....+.|...........|+ +..++..|.++...
T Consensus       202 gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~  280 (468)
T PF10300_consen  202 GDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK  280 (468)
T ss_pred             CcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            78888899998887732 3322211     11111111 1    345678899999999999999 77789999999999


Q ss_pred             cCHHHHHHHHHHHhhcCCcc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          131 RRFQEAEDDCTEALNLDDRY----IKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       131 ~~~~eA~~~~~~al~l~p~~----~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      |+.++|+..+++++......    .-+++-+|+++..+++|++|..+|.+.++.+.-.
T Consensus       281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS  338 (468)
T PF10300_consen  281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS  338 (468)
T ss_pred             cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH
Confidence            99999999999999544332    3468899999999999999999999999876653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.18  E-value=0.11  Score=43.92  Aligned_cols=75  Identities=19%  Similarity=0.124  Sum_probs=61.0

Q ss_pred             CCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHhh-cCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696          114 SPTAVAYANRAMAYLKLR---RFQEAEDDCTEALN-LDDR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (438)
Q Consensus       114 ~p~~~~~~~la~~~~~l~---~~~eA~~~~~~al~-l~p~-~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~  188 (438)
                      ++.....+++|.++.+..   +..+.+..++..+. -.|. .-...|.+|..++++|+|+.|+.+.+..|+.+|+|.++.
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            455777888888888766   46678888888886 3343 356788999999999999999999999999999998874

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.17  E-value=0.044  Score=47.16  Aligned_cols=59  Identities=22%  Similarity=0.200  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN  145 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~  145 (438)
                      +..++..+...|++++|+..+.+++..+|. ..+|..+-.+|...|++.+|+..|.++..
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            567788889999999999999999999999 88999999999999999999999988753

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.07  E-value=0.0096  Score=38.32  Aligned_cols=28  Identities=25%  Similarity=0.296  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 013696          119 AYANRAMAYLKLRRFQEAEDDCTEALNL  146 (438)
Q Consensus       119 ~~~~la~~~~~l~~~~eA~~~~~~al~l  146 (438)
                      +|.++|.+|..+|+|++|+.+|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3566777777777777777777775533

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.02  E-value=0.084  Score=43.13  Aligned_cols=90  Identities=11%  Similarity=0.145  Sum_probs=52.1

Q ss_pred             HHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcC-----------HHHHHHHHHHHhhcCCccHHHHH
Q 013696           91 GNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR-----------FQEAEDDCTEALNLDDRYIKAYS  155 (438)
Q Consensus        91 g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~-----------~~eA~~~~~~al~l~p~~~~a~~  155 (438)
                      +..++..|++-+|++..+..+...++    +..+..-|.++..+..           .-.++++|.++..+.|..+..++
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~   82 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF   82 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence            45566666666666666666666554    2334444555544331           23456666677777766666666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696          156 RRATARKELGKLKESIEDSEFALRL  180 (438)
Q Consensus       156 ~lg~a~~~lg~~~eA~~~~~~al~l  180 (438)
                      .+|.-+.....|++++.-.+++|.+
T Consensus        83 ~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   83 ELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            6666555555566666666666554

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.00  E-value=0.058  Score=55.02  Aligned_cols=114  Identities=18%  Similarity=0.044  Sum_probs=77.5

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc-------CC---------------C-
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-------SP---------------T-  116 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~-------~p---------------~-  116 (438)
                      +..+...-++.-.+||+++|+...++.  .++...  .....+|..+|+++++.       +.               + 
T Consensus       180 RERnp~aRIkaA~eALei~pdCAdAYI--LLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt  255 (539)
T PF04184_consen  180 RERNPQARIKAAKEALEINPDCADAYI--LLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDT  255 (539)
T ss_pred             hcCCHHHHHHHHHHHHHhhhhhhHHHh--hccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcccc
Confidence            556677777778888888888777733  444321  11123344444444332       11               0 


Q ss_pred             ---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013696          117 ---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR--YIKAYSRRATARKELGKLKESIEDSEFA  177 (438)
Q Consensus       117 ---~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~--~~~a~~~lg~a~~~lg~~~eA~~~~~~a  177 (438)
                         ..+-..+|+|..++|+.++|++.+...++..|.  +...++++-.++..++.|.++...+.+.
T Consensus       256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence               234566889999999999999999999887764  4668889999999999998888877765

The molecular function of this protein is uncertain.

>PRK10941 hypothetical protein; Provisional

Probab=95.95  E-value=0.064  Score=51.42  Aligned_cols=76  Identities=14%  Similarity=0.101  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 013696           85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA  160 (438)
Q Consensus        85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a  160 (438)
                      ..+.++-.+|.+.++|+.|+.+.++.+.++|+ +.-+.-+|.+|.++|.+..|..+++.-+...|+++.+-.-...+
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            33667788999999999999999999999999 88899999999999999999999999999999998876554443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.94  E-value=0.027  Score=53.88  Aligned_cols=70  Identities=20%  Similarity=0.230  Sum_probs=43.5

Q ss_pred             HHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 013696           89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA  158 (438)
Q Consensus        89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg  158 (438)
                      ..+....+.|+.++|...|..|+.+.|. +.++...|.....-++.-+|-++|.+|+.++|.+.+|+.+++
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            4444455566666666666666666666 666666666666666666666666666666666666666554

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=95.87  E-value=0.3  Score=51.35  Aligned_cols=145  Identities=15%  Similarity=0.158  Sum_probs=103.8

Q ss_pred             cCCCccchHHHHHhhhc-CCCCChh---HHHHHHHHHHHHHhccHHHHHHHHHHHhccC-CC----HHHHHHHHHHHHHh
Q 013696           60 SYSRNYDPVSHISSSLM-NEESTPD---ATSEKELGNECFKQKKFKEAIDCYSRSIALS-PT----AVAYANRAMAYLKL  130 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~-~~p~~~~---a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~-p~----~~~~~~la~~~~~l  130 (438)
                      ..|+..+-+..|..++. .+|....   ...|...|..|...|+.+.|-..|+++.... +.    +.+|.+-|..-+..
T Consensus       359 ~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh  438 (835)
T KOG2047|consen  359 YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH  438 (835)
T ss_pred             hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence            34566777778877775 5554432   2236688888889999999999999988875 33    77888888888888


Q ss_pred             cCHHHHHHHHHHHhhcCC------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-----
Q 013696          131 RRFQEAEDDCTEALNLDD------------------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI-----  187 (438)
Q Consensus       131 ~~~~eA~~~~~~al~l~p------------------~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~-----  187 (438)
                      .+++.|....++|...-.                  ...+.|...+......|-++.....|++++.|.-..|..     
T Consensus       439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA  518 (835)
T KOG2047|consen  439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA  518 (835)
T ss_pred             hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            899999888888875421                  124567777777788888888888888888877666554     


Q ss_pred             -----HHHHHHHHHHHHHHHhh
Q 013696          188 -----KKQLAEVKSLYEKEVFQ  204 (438)
Q Consensus       188 -----~~~l~~a~~~~~ka~~~  204 (438)
                           .....++.+.|++++.+
T Consensus       519 mfLEeh~yfeesFk~YErgI~L  540 (835)
T KOG2047|consen  519 MFLEEHKYFEESFKAYERGISL  540 (835)
T ss_pred             HHHHhhHHHHHHHHHHHcCCcc
Confidence                 33445666666666554

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.84  E-value=0.032  Score=53.41  Aligned_cols=70  Identities=19%  Similarity=0.060  Sum_probs=63.0

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 013696          121 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ  190 (438)
Q Consensus       121 ~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  190 (438)
                      .+.|.-..+.|+.+.|...|+.|+.++|+++.++..+|.......+.-+|-.+|-+||.+.|.|.+++-+
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn  189 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN  189 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence            4445556688999999999999999999999999999999999999999999999999999999998443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.81  E-value=0.12  Score=46.34  Aligned_cols=96  Identities=17%  Similarity=0.096  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc--cH----HHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR--YI----KAYSR  156 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~--~~----~a~~~  156 (438)
                      +..+|..|.+.|+++.|+++|.++......    ...++++-.+.+..++|..+..+..++-.+-..  +.    +.-..
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~  118 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY  118 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            779999999999999999999998887644    677888899999999999999999998765322  22    22344


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696          157 RATARKELGKLKESIEDSEFALRLEP  182 (438)
Q Consensus       157 lg~a~~~lg~~~eA~~~~~~al~l~P  182 (438)
                      -|..+...|+|.+|-..|-.++.-..
T Consensus       119 ~gL~~l~~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen  119 EGLANLAQRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             HHHHHHHhchHHHHHHHHHccCcCCC
Confidence            57778889999999999877664443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.67  E-value=0.051  Score=56.16  Aligned_cols=104  Identities=16%  Similarity=0.183  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHH-hccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 013696           84 ATSEKELGNECFK-QKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  159 (438)
Q Consensus        84 a~~~~~~g~~~~~-~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~  159 (438)
                      .+.+..++..|++ .|+..+|+.||..++-..|.   -.++..+|.++.+.|...+|--.+..|+.-.|.....++.+|.
T Consensus       212 sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~  291 (886)
T KOG4507|consen  212 SWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGN  291 (886)
T ss_pred             hHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHH
Confidence            3335666777765 69999999999999998876   6778999999999999999999999999888877777999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          160 ARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       160 a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      ++..+|.|......|..+.+..|.....
T Consensus       292 i~aml~~~N~S~~~ydha~k~~p~f~q~  319 (886)
T KOG4507|consen  292 IYAMLGEYNHSVLCYDHALQARPGFEQA  319 (886)
T ss_pred             HHHHHhhhhhhhhhhhhhhccCcchhHH
Confidence            9999999999999999999999987665

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.66  E-value=0.11  Score=48.19  Aligned_cols=90  Identities=12%  Similarity=0.103  Sum_probs=69.1

Q ss_pred             cCCCccchHHHHHhhhc-----CCCCChhHHHHHHHHHHHHHhcc-------HHHHHHHHHHHhccC--CC-----HHHH
Q 013696           60 SYSRNYDPVSHISSSLM-----NEESTPDATSEKELGNECFKQKK-------FKEAIDCYSRSIALS--PT-----AVAY  120 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~-----~~p~~~~a~~~~~~g~~~~~~g~-------y~~Ai~~y~~al~~~--p~-----~~~~  120 (438)
                      ....+++|++.|.-|+-     ..+....|..+..+|+.|...|+       +..|+..|.+++...  |.     ..+.
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            34467889998887765     22333556678888999988887       567777788887754  22     5778


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHhhcCCc
Q 013696          121 ANRAMAYLKLRRFQEAEDDCTEALNLDDR  149 (438)
Q Consensus       121 ~~la~~~~~l~~~~eA~~~~~~al~l~p~  149 (438)
                      +.+|..+.++|++++|..+|.+++.....
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            89999999999999999999999976543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=95.64  E-value=0.28  Score=51.54  Aligned_cols=198  Identities=13%  Similarity=0.048  Sum_probs=130.7

Q ss_pred             hhhhHHHHHHHHHhHHHHH----HHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCC
Q 013696            5 NRDQALDFQGFLNDLQDWD----LSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEE   79 (438)
Q Consensus         5 ~r~~~~~l~~~~~~l~~we----~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p   79 (438)
                      +|||......|.+...-++    +.+.-+.+++++..|....+ ++  ...+...|..| ..|+.+.|...|++++...=
T Consensus       342 LRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~G-s~--~~Lw~~faklYe~~~~l~~aRvifeka~~V~y  418 (835)
T KOG2047|consen  342 LRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVG-SP--GTLWVEFAKLYENNGDLDDARVIFEKATKVPY  418 (835)
T ss_pred             HhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCC-Ch--hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence            3445444444444433322    23445566666665443322 11  11223344446 88999999999999998652


Q ss_pred             CCh--hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------------------HHHHHHHHHHHHHhcCHHHHHH
Q 013696           80 STP--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------------AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        80 ~~~--~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------------------~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ...  -+..|.+.|..-....+++.|+.+.++|...=..                   ..+|...+......|-++....
T Consensus       419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~  498 (835)
T KOG2047|consen  419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA  498 (835)
T ss_pred             cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence            222  1444778888888889999999999988764111                   2445555666666777888888


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHH-------------HHHHHHHHHHHHHHh
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP--QNQEIK-------------KQLAEVKSLYEKEVF  203 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P--~~~~~~-------------~~l~~a~~~~~ka~~  203 (438)
                      .|++.|.+.--.|....+.|..+....-+++|.+.|++.+.|-|  .-.++|             ..++.|..+|++++.
T Consensus       499 vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~  578 (835)
T KOG2047|consen  499 VYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD  578 (835)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence            88899888877888888888888888888999999999888874  333332             235677777777776


Q ss_pred             hc
Q 013696          204 QK  205 (438)
Q Consensus       204 ~~  205 (438)
                      .-
T Consensus       579 ~C  580 (835)
T KOG2047|consen  579 GC  580 (835)
T ss_pred             cC
Confidence            43

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.59  E-value=0.19  Score=49.67  Aligned_cols=103  Identities=20%  Similarity=0.100  Sum_probs=71.8

Q ss_pred             cCCCccchHHHHHhhhcCCCC----ChhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc---CC-----------------
Q 013696           60 SYSRNYDPVSHISSSLMNEES----TPDATSEKELGNECFKQKKFKEAIDCYSRSIAL---SP-----------------  115 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~----~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~---~p-----------------  115 (438)
                      ..|.++-|...+.++...++.    .+..  ....+..++..|+..+|+......+..   .+                 
T Consensus       158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v--~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (352)
T PF02259_consen  158 KAGNFQLALSALNRLFQLNPSSESLLPRV--FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESL  235 (352)
T ss_pred             HCCCcHHHHHHHHHHhccCCcccCCCcch--HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccc
Confidence            668888888888887765421    2333  457788888888888888887777761   00                 


Q ss_pred             --------C-------HHHHHHHHHHHHHh------cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 013696          116 --------T-------AVAYANRAMAYLKL------RRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL  164 (438)
Q Consensus       116 --------~-------~~~~~~la~~~~~l------~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l  164 (438)
                              .       +.++..+|......      +.+++++..|..++.++|...++|+.+|..+..+
T Consensus       236 ~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  236 EVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             ccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence                    0       45566666666666      6777888888888888888888888888765543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.57  E-value=0.02  Score=52.70  Aligned_cols=57  Identities=18%  Similarity=0.275  Sum_probs=35.1

Q ss_pred             HHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          128 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       128 ~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      ...++.+.|.+.|.+++.+-|.....|+++|....+.|+++.|...|+++|+++|.+
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            344555666666666666666666666666666666666666666666666666654

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.49  E-value=0.24  Score=50.55  Aligned_cols=98  Identities=12%  Similarity=0.097  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 013696          101 KEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK-LKESIEDSEFAL  178 (438)
Q Consensus       101 ~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~-~~eA~~~~~~al  178 (438)
                      ..=+..|++|+...+. ...|.+...-..+.+.+.+--..|.+++...|+++..|..-|.-.+..+. .+.|.+.|.++|
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            3445678999988885 88887776666666679999999999999999999999998888777776 899999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHH
Q 013696          179 RLEPQNQEIKKQLAEVKSLY  198 (438)
Q Consensus       179 ~l~P~~~~~~~~l~~a~~~~  198 (438)
                      +.+|+++..+..+-...-.|
T Consensus       168 R~npdsp~Lw~eyfrmEL~~  187 (568)
T KOG2396|consen  168 RFNPDSPKLWKEYFRMELMY  187 (568)
T ss_pred             hcCCCChHHHHHHHHHHHHH
Confidence            99999999977666555433

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.45  E-value=0.15  Score=43.14  Aligned_cols=80  Identities=13%  Similarity=0.131  Sum_probs=64.8

Q ss_pred             hhHHHHHHHHHHHHHhc---cHHHHHHHHHHHhc-cCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHH
Q 013696           82 PDATSEKELGNECFKQK---KFKEAIDCYSRSIA-LSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS  155 (438)
Q Consensus        82 ~~a~~~~~~g~~~~~~g---~y~~Ai~~y~~al~-~~p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~  155 (438)
                      ......+++++++.+..   +..+.|.+++..+. -.|.  -...+.+|..+.++++|+.++.+++..++.+|+|..+.-
T Consensus        30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            34445778999998765   46788999999997 4565  677888999999999999999999999999999988765


Q ss_pred             HHHHHH
Q 013696          156 RRATAR  161 (438)
Q Consensus       156 ~lg~a~  161 (438)
                      ..-.+.
T Consensus       110 Lk~~ie  115 (149)
T KOG3364|consen  110 LKETIE  115 (149)
T ss_pred             HHHHHH
Confidence            544433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.39  E-value=0.027  Score=60.17  Aligned_cols=107  Identities=9%  Similarity=-0.049  Sum_probs=69.6

Q ss_pred             cCCCccchHHHHHhhh----------cCCCCChh--------HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHH
Q 013696           60 SYSRNYDPVSHISSSL----------MNEESTPD--------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYA  121 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al----------~~~p~~~~--------a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~  121 (438)
                      .-++.+.|+++|+++-          ..+|...+        -..|...|..+-..|+.+.|+.+|..|-.       |+
T Consensus       870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------~f  942 (1416)
T KOG3617|consen  870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------YF  942 (1416)
T ss_pred             hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------hh
Confidence            3467788888887752          22222111        11156677777788888888888876533       45


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013696          122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL  178 (438)
Q Consensus       122 ~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al  178 (438)
                      .+-.+.+.+|+.++|-...+     ...+-.|.|.+|..|...|++.+|+..|.+|-
T Consensus       943 s~VrI~C~qGk~~kAa~iA~-----esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  943 SMVRIKCIQGKTDKAARIAE-----ESGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             hheeeEeeccCchHHHHHHH-----hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            55555556677666654333     34567778888888888888888888777653

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.37  E-value=0.088  Score=43.01  Aligned_cols=89  Identities=16%  Similarity=0.278  Sum_probs=74.1

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhH-HHHHHHHHHHHHhcc-----------HHHHHHHHHHHhccCCC-HHHHHHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKK-----------FKEAIDCYSRSIALSPT-AVAYANRAM  125 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a-~~~~~~g~~~~~~g~-----------y~~Ai~~y~~al~~~p~-~~~~~~la~  125 (438)
                      |..|++-+|++..+..+...++...+ ..+...|..++....           .-.|+++|.++..+.|. +..++.+|.
T Consensus         7 ~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~   86 (111)
T PF04781_consen    7 FARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELAS   86 (111)
T ss_pred             HHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHH
Confidence            47899999999999999988776643 446788888877543           45789999999999999 888999998


Q ss_pred             HHHHhcCHHHHHHHHHHHhhcC
Q 013696          126 AYLKLRRFQEAEDDCTEALNLD  147 (438)
Q Consensus       126 ~~~~l~~~~eA~~~~~~al~l~  147 (438)
                      -+-...-|+++..-+.+++.+.
T Consensus        87 ~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   87 QLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HhhhHHHHHHHHHHHHHHhccc
Confidence            8777788999999999998764

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.31  E-value=0.36  Score=50.27  Aligned_cols=128  Identities=16%  Similarity=0.010  Sum_probs=99.0

Q ss_pred             hHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHH-HHHHHHHh
Q 013696           67 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA-EDDCTEAL  144 (438)
Q Consensus        67 Ai~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA-~~~~~~al  144 (438)
                      ++..+...+.+++.++.......+...+...+....++-....++..+|. +.++.++|.+....|....+ ..++..+.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            55666666677777777533223677777888888899999999999998 88899998888777765554 55556699


Q ss_pred             hcCCccHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013696          145 NLDDRYIKAYSRR------ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (438)
Q Consensus       145 ~l~p~~~~a~~~l------g~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a  194 (438)
                      ...|++.....-+      |.....+|+..++..++.++..+.|.++.+.+.+--+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            9999987765544      8888999999999999999999999998875554433

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.23  E-value=0.28  Score=46.62  Aligned_cols=71  Identities=17%  Similarity=0.151  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      .....|+=..|...++++.|..+..+.+.++|.++.-+.-+|.+|.++|.+.-|++++...++..|+++.+
T Consensus       181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a  251 (269)
T COG2912         181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA  251 (269)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence            55667777889999999999999999999999999999999999999999999999999999999998876

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.22  E-value=0.32  Score=55.17  Aligned_cols=125  Identities=12%  Similarity=0.001  Sum_probs=112.5

Q ss_pred             cC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcCH
Q 013696           58 GN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRF  133 (438)
Q Consensus        58 ~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l~~~  133 (438)
                      .| ..+++++|.++|+.-++...+....  |..+|..++++.+-+.|-..+.+|++.-|.   .......|..-++.|+-
T Consensus      1539 iy~k~ek~~~A~ell~~m~KKF~q~~~v--W~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQTRKV--WIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred             HHHHhhcchhHHHHHHHHHHHhcchhhH--HHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            35 5678999999999999877655556  779999999999999999999999999987   67778889999999999


Q ss_pred             HHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       134 ~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      +.+...|+-.+.-.|.-...|.-+...-.++|+..-+...|++++.+.=.-
T Consensus      1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred             hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence            999999999999999999999999999999999999999999999887543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.90  E-value=0.66  Score=46.12  Aligned_cols=121  Identities=20%  Similarity=0.130  Sum_probs=93.9

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc---CCC------HHHHHHHHHHHHHh
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL---SPT------AVAYANRAMAYLKL  130 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~---~p~------~~~~~~la~~~~~l  130 (438)
                      ..|+.+-|+.+-+++-...|..+.+  +...-......|+|+.|++..+...+.   .++      +.++...++..+. 
T Consensus       166 r~GareaAr~yAe~Aa~~Ap~l~WA--~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-  242 (531)
T COG3898         166 RLGAREAARHYAERAAEKAPQLPWA--ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-  242 (531)
T ss_pred             hcccHHHHHHHHHHHHhhccCCchH--HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-
Confidence            6688888888888888888877776  335555667788999998887665543   233      3444545544443 


Q ss_pred             cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696          131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       131 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~  183 (438)
                      .+...|..+...++++.|+.+.+-..-+.+++..|+..++-..++.+.+.+|.
T Consensus       243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH  295 (531)
T COG3898         243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH  295 (531)
T ss_pred             CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence            35778889999999999999999999999999999999999999999999985

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.81  E-value=0.46  Score=48.37  Aligned_cols=119  Identities=12%  Similarity=0.029  Sum_probs=91.1

Q ss_pred             cCCCccchHHHHHhhhcC---CCC-----ChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMN---EES-----TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAY  127 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~---~p~-----~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~  127 (438)
                      ..|++.+|+.......+.   .|.     ...+..+..+|..+..-+-|+.|...|..|.++-..    +.+-.|+|..|
T Consensus       335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y  414 (629)
T KOG2300|consen  335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY  414 (629)
T ss_pred             HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence            558899998887766653   233     123455778999999999999999999999998755    66678899999


Q ss_pred             HHhcCHHHHHHHHHHHhhcCCcc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696          128 LKLRRFQEAEDDCTEALNLDDRY----------IKAYSRRATARKELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       128 ~~l~~~~eA~~~~~~al~l~p~~----------~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~  181 (438)
                      +..++-+.   .|+-.-.+.|.+          ..++|..|.-.+..+++.||...+.+.|+..
T Consensus       415 L~~~~~ed---~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  415 LRIGDAED---LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHhccHHH---HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            99876443   333333455543          3568889999999999999999999999987

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.49  E-value=0.22  Score=39.32  Aligned_cols=48  Identities=17%  Similarity=0.085  Sum_probs=35.2

Q ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       137 ~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      +..+++++.-+|+++.+.+.+|.++...|++++|++.+-.+++.+++.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            456677777888888888888888888888888888888888877665

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.33  E-value=0.82  Score=48.66  Aligned_cols=113  Identities=16%  Similarity=0.091  Sum_probs=91.1

Q ss_pred             CCccchHHHHHhhhc-------CCCCChhHHHHHHHHHHHHHh----c-cHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 013696           62 SRNYDPVSHISSSLM-------NEESTPDATSEKELGNECFKQ----K-KFKEAIDCYSRSIALSPTAVAYANRAMAYLK  129 (438)
Q Consensus        62 g~~~eAi~~~~~al~-------~~p~~~~a~~~~~~g~~~~~~----g-~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~  129 (438)
                      +|.+.|+.+|..+..       ..  .+.+  .+.+|.+|.+.    . ++..|+.+|.++-.... +.+.+.+|.||..
T Consensus       263 ~d~e~a~~~l~~aa~~~~~~a~~~--~~~a--~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~  337 (552)
T KOG1550|consen  263 QDLESAIEYLKLAAESFKKAATKG--LPPA--QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYET  337 (552)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhc--CCcc--ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHc
Confidence            578999999998876       22  3345  66899999884    3 78999999999987643 6677788888887


Q ss_pred             hc---CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhC
Q 013696          130 LR---RFQEAEDDCTEALNLDDRYIKAYSRRATARKEL----GKLKESIEDSEFALRLE  181 (438)
Q Consensus       130 l~---~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l----g~~~eA~~~~~~al~l~  181 (438)
                      -.   ++..|.++|..|...  .++.+++++|.+|..-    -+...|..++.++-..+
T Consensus       338 g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  338 GTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             CCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            66   678999999999875  5789999999988753    36789999999999888

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.21  E-value=0.075  Score=48.99  Aligned_cols=59  Identities=20%  Similarity=0.230  Sum_probs=53.1

Q ss_pred             HHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccH
Q 013696           93 ECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI  151 (438)
Q Consensus        93 ~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~  151 (438)
                      ...+.++++.|.+.|.+++.+.|. ...|+.+|....+.|+++.|...|++.++++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            456678999999999999999999 88899999999999999999999999999999764

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.17  E-value=0.2  Score=41.47  Aligned_cols=85  Identities=18%  Similarity=0.163  Sum_probs=62.5

Q ss_pred             CCccchHHHHHhhhcCCCCC----------hhHHHHHHHHHHHHHhccHHHHHHHHHHHhc-------cCCC-----HHH
Q 013696           62 SRNYDPVSHISSSLMNEEST----------PDATSEKELGNECFKQKKFKEAIDCYSRSIA-------LSPT-----AVA  119 (438)
Q Consensus        62 g~~~eAi~~~~~al~~~p~~----------~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~-------~~p~-----~~~  119 (438)
                      |-|.+|...+++++......          .++..+-.++-++...|+|++++..-.++|.       ++.+     ..+
T Consensus        23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa  102 (144)
T PF12968_consen   23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA  102 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence            55788888888888754332          2345566888999999999988776666664       4444     456


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 013696          120 YANRAMAYLKLRRFQEAEDDCTEALNL  146 (438)
Q Consensus       120 ~~~la~~~~~l~~~~eA~~~~~~al~l  146 (438)
                      .+++|.++..+|+.++|+..|+.+-++
T Consensus       103 Vfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen  103 VFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            789999999999999999999988653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.10  E-value=2.3  Score=39.93  Aligned_cols=97  Identities=22%  Similarity=0.163  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC-----CccHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-----DRYIKAY  154 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~-----p~~~~a~  154 (438)
                      |..-+++|...++|++|-.++.++++...+       +.+|-..|+....+..+.++...|++|..+.     |+-...-
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAma  113 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMA  113 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHH
Confidence            344456677778899988888888854322       5667777888888888999999999988663     3333333


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696          155 SRRATARKELGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       155 ~~lg~a~~~lg~~~eA~~~~~~al~l~P~  183 (438)
                      ...|--..+..+.++|++.|++++.+--.
T Consensus       114 leKAak~lenv~Pd~AlqlYqralavve~  142 (308)
T KOG1585|consen  114 LEKAAKALENVKPDDALQLYQRALAVVEE  142 (308)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence            34444455666788888888888876543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.10  E-value=0.49  Score=47.00  Aligned_cols=137  Identities=12%  Similarity=0.097  Sum_probs=104.5

Q ss_pred             CCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 013696           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDC  140 (438)
Q Consensus        61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~~  140 (438)
                      ..+...|...-.+++++.|+...+-.  .-+..+++.|+..++-..++.+++..|.+.++    ..|....--+.++.-+
T Consensus       242 dadp~~Ar~~A~~a~KL~pdlvPaav--~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRl  315 (531)
T COG3898         242 DADPASARDDALEANKLAPDLVPAAV--VAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRL  315 (531)
T ss_pred             cCChHHHHHHHHHHhhcCCccchHHH--HHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHH
Confidence            34577788889999999999888744  77899999999999999999999999985543    2333333333444444


Q ss_pred             HH---HhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHh
Q 013696          141 TE---ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVF  203 (438)
Q Consensus       141 ~~---al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~  203 (438)
                      ++   .-.+.|++....+.++.+-...|+|..|...-+.+.++.|.....          .++-.++..++.+++.
T Consensus       316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            44   446779999999999999999999999999999999999976543          2444555566666553

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.07  E-value=0.75  Score=40.29  Aligned_cols=95  Identities=12%  Similarity=-0.071  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg  165 (438)
                      +......-...++.+++...+...--+.|. +.+-..-|..+...|+|.+|+..++.+..-.|..+.+--.++.|++.+|
T Consensus        13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~   92 (160)
T PF09613_consen   13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG   92 (160)
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence            567777788888999999999888888999 8888888999999999999999999999999999988889999999999


Q ss_pred             CHHHHHHHHHHHHhhCC
Q 013696          166 KLKESIEDSEFALRLEP  182 (438)
Q Consensus       166 ~~~eA~~~~~~al~l~P  182 (438)
                      +..- ..+-..++.-.+
T Consensus        93 D~~W-r~~A~evle~~~  108 (160)
T PF09613_consen   93 DPSW-RRYADEVLESGA  108 (160)
T ss_pred             ChHH-HHHHHHHHhcCC
Confidence            8642 223344555544

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.06  E-value=0.53  Score=45.89  Aligned_cols=99  Identities=12%  Similarity=0.016  Sum_probs=80.5

Q ss_pred             HHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-CCcc---HHHHHHHHHHHHH
Q 013696           89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL-DDRY---IKAYSRRATARKE  163 (438)
Q Consensus        89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l-~p~~---~~a~~~lg~a~~~  163 (438)
                      ..+...+..|++.+|...+.+.+.-.|. -.++..--.+++.+|+...-...+++.+-. +++-   +...-.++..+..
T Consensus       108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E  187 (491)
T KOG2610|consen  108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE  187 (491)
T ss_pred             hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence            3455677889999999999999999998 555555557788889999888999999876 5554   4444456778899


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          164 LGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       164 lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      .|-|++|...-.+++++||.+..+
T Consensus       188 ~g~y~dAEk~A~ralqiN~~D~Wa  211 (491)
T KOG2610|consen  188 CGIYDDAEKQADRALQINRFDCWA  211 (491)
T ss_pred             hccchhHHHHHHhhccCCCcchHH
Confidence            999999999999999999998776

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.00  E-value=0.43  Score=44.55  Aligned_cols=122  Identities=16%  Similarity=0.130  Sum_probs=73.3

Q ss_pred             cCCCccchHHHHHhhhcCCC--CCh-hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEE--STP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLK  129 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p--~~~-~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~  129 (438)
                      ....+.++..+|+++..+.-  ..+ .+-.-...+--....-+.++|+..|++++.+...       ...+...+.++.+
T Consensus        83 e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr  162 (308)
T KOG1585|consen   83 ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR  162 (308)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence            44556677777777655321  111 1211234555566677778888888888776422       3455666777777


Q ss_pred             hcCHHHHHHHHHHHhhc----C--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696          130 LRRFQEAEDDCTEALNL----D--DRYIKAYSRRATARKELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       130 l~~~~eA~~~~~~al~l----~--p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~  181 (438)
                      ++.|.+|-..+.+-..+    +  ++..+++...-.+|....+|..|..+|+..-++.
T Consensus       163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip  220 (308)
T KOG1585|consen  163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP  220 (308)
T ss_pred             hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence            88888776655554332    2  3334555555566666678888888887766654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.00  E-value=0.099  Score=34.05  Aligned_cols=25  Identities=40%  Similarity=0.379  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHh
Q 013696          120 YANRAMAYLKLRRFQEAEDDCTEAL  144 (438)
Q Consensus       120 ~~~la~~~~~l~~~~eA~~~~~~al  144 (438)
                      +.++|.+|..+|+|++|+.++++++
T Consensus         5 ~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    5 LNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcchhhHHHHHHH
Confidence            3444444444444444444444444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.90  E-value=0.14  Score=33.39  Aligned_cols=31  Identities=29%  Similarity=0.329  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696          151 IKAYSRRATARKELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       151 ~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~  181 (438)
                      ..++.++|.+|..+|++++|+.++++++.+.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            3578899999999999999999999998764

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.78  E-value=2.1  Score=41.30  Aligned_cols=124  Identities=13%  Similarity=-0.002  Sum_probs=89.4

Q ss_pred             CcCCCccchHHHHHhhhcCC----CCChh--HHHHHHHHHHHHHhc-cHHHHHHHHHHHhcc----CC------C-----
Q 013696           59 NSYSRNYDPVSHISSSLMNE----ESTPD--ATSEKELGNECFKQK-KFKEAIDCYSRSIAL----SP------T-----  116 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~----p~~~~--a~~~~~~g~~~~~~g-~y~~Ai~~y~~al~~----~p------~-----  116 (438)
                      ..+|+++.|.-+|.++-...    |+...  +..+++.|...+..+ +|+.|+..+++++++    .+      +     
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            46789999999999886544    32222  455889999999999 999999999999987    21      1     


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHH---HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696          117 AVAYANRAMAYLKLRRFQEAED---DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (438)
Q Consensus       117 ~~~~~~la~~~~~l~~~~eA~~---~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P  182 (438)
                      ..++..++.+|+..+.++...+   ..+.+-.-.|+.+..++..=.++...++.+++.+.+.+++.--+
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            4567888999999887664433   33334344566666664444444448999999999999887654

It is also involved in sporulation [].

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.72  E-value=0.76  Score=36.28  Aligned_cols=44  Identities=25%  Similarity=0.211  Sum_probs=20.2

Q ss_pred             HHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc
Q 013696          106 CYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR  149 (438)
Q Consensus       106 ~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~  149 (438)
                      .+.+.++.+|+ ..+.+.+|.++...|++++|++.+-.+++.+++
T Consensus        10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~   54 (90)
T PF14561_consen   10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD   54 (90)
T ss_dssp             HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            34444444444 444444555555555555555555555444443

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.56  E-value=3.4  Score=39.19  Aligned_cols=124  Identities=9%  Similarity=0.039  Sum_probs=89.1

Q ss_pred             CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHh-ccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHH-HHHH
Q 013696           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ-KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ-EAED  138 (438)
Q Consensus        62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~-g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~-eA~~  138 (438)
                      ..-..|+.+-..+|.++|.+...+.  .+-.++... .+..+-+++..+.++-+|. -.+|..+-.+...+|++. .-+.
T Consensus        57 E~S~RAl~LT~d~i~lNpAnYTVW~--yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe  134 (318)
T KOG0530|consen   57 EKSPRALQLTEDAIRLNPANYTVWQ--YRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE  134 (318)
T ss_pred             ccCHHHHHHHHHHHHhCcccchHHH--HHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence            3445566666677777777666633  333333332 3456667778888888887 777777777777777777 6778


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      .+..++..+..+.-+|..+-++....+.|+.-+.+....|..+-.|..+
T Consensus       135 f~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSA  183 (318)
T KOG0530|consen  135 FTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSA  183 (318)
T ss_pred             HHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccch
Confidence            8888888888888888888888888888888888888888887666555

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=93.46  E-value=0.2  Score=48.28  Aligned_cols=93  Identities=15%  Similarity=0.103  Sum_probs=76.1

Q ss_pred             HHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          107 YSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR-RATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       107 y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~-lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      |.++-...|+ +..|...+....+.+.|.+--..|.+++...|.++..|.. -+.-+...+++..+...|.++|+++|.+
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            4444444555 7777777777778888999999999999999999999877 5566788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 013696          185 QEIKKQLAEVKSLYE  199 (438)
Q Consensus       185 ~~~~~~l~~a~~~~~  199 (438)
                      +..|.++-...-.|-
T Consensus       176 p~iw~eyfr~El~yi  190 (435)
T COG5191         176 PRIWIEYFRMELMYI  190 (435)
T ss_pred             chHHHHHHHHHHHHH
Confidence            999887776665554

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.33  E-value=0.35  Score=43.63  Aligned_cols=90  Identities=18%  Similarity=0.116  Sum_probs=70.2

Q ss_pred             cCCCccchHHHHHhhhcCCC-CChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEE-STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEA  136 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p-~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA  136 (438)
                      ..|++++|+..+..++..-. .+..+..-..+|.+.+..|.+++|+..+...-  ++.  +...-.+|.+++..|+-++|
T Consensus       101 e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~A  178 (207)
T COG2976         101 EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEA  178 (207)
T ss_pred             hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHH
Confidence            77999999999999986432 22334445688999999999999998865432  233  45567789999999999999


Q ss_pred             HHHHHHHhhcCCccH
Q 013696          137 EDDCTEALNLDDRYI  151 (438)
Q Consensus       137 ~~~~~~al~l~p~~~  151 (438)
                      ...|.+++..+++.+
T Consensus       179 r~ay~kAl~~~~s~~  193 (207)
T COG2976         179 RAAYEKALESDASPA  193 (207)
T ss_pred             HHHHHHHHHccCChH
Confidence            999999999985543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.23  E-value=5.7  Score=35.41  Aligned_cols=127  Identities=7%  Similarity=-0.016  Sum_probs=92.0

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHhcCHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQ  134 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~l~~~~  134 (438)
                      ..+..++|+..|...-...-......+....|.+....|+-..|+..|..+-.-.|-     -.+...-|..+...|.|+
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~  149 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD  149 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence            347788888888887665544455555778899999999999999999998776654     234455567778888998


Q ss_pred             HHHHHHHHHh-hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          135 EAEDDCTEAL-NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       135 eA~~~~~~al-~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      .-..-.+..- .-+|--..+.-.+|.+-.+.|++..|...|..... +...+..
T Consensus       150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprn  202 (221)
T COG4649         150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRN  202 (221)
T ss_pred             HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHH
Confidence            8665444332 22333456677789999999999999999998876 4333433

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=93.16  E-value=0.67  Score=51.94  Aligned_cols=99  Identities=20%  Similarity=0.186  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhc-------CHHHHHHHHHHHhhcCCccHHHHHH
Q 013696           88 KELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLR-------RFQEAEDDCTEALNLDDRYIKAYSR  156 (438)
Q Consensus        88 ~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~-------~~~eA~~~~~~al~l~p~~~~a~~~  156 (438)
                      .....++...+.|+.|+..|++.-.-.|.    ..+.+..|...+..-       .+.+|+.-|++.. -.|.-|--|..
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  557 (932)
T PRK13184        479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG  557 (932)
T ss_pred             ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence            34566788889999999999999999997    688899998877643       3666666666543 34566777999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          157 RATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       157 lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      .|.+|..+|+|++-+..|.-|++-.|..|++
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            9999999999999999999999999999876

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.12  E-value=0.4  Score=48.74  Aligned_cols=124  Identities=15%  Similarity=0.059  Sum_probs=96.5

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~  137 (438)
                      +..|+...|-.....+|...|..+....  ..+.++...|.|+.|.....-+-.+-.. ..+..-+-....+++++++|.
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~  377 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL  377 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence            4668888888888888888888888744  6688889999999998887665544333 444445556778899999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      ......+.-.-.++....--|..-..+|-+++|.-++.+++.++|..
T Consensus       378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            98888887776777766666666778899999999999999999853

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=93.12  E-value=2.6  Score=40.62  Aligned_cols=114  Identities=16%  Similarity=0.063  Sum_probs=57.0

Q ss_pred             CccchHHHHHhhhcCCCCChhHHHHHHHHHHHHH----hccHHHHHHHHHHHhccCC-C-HHHHHHHHHHHHHhc-----
Q 013696           63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSP-T-AVAYANRAMAYLKLR-----  131 (438)
Q Consensus        63 ~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~----~g~y~~Ai~~y~~al~~~p-~-~~~~~~la~~~~~l~-----  131 (438)
                      +..+|+.+|..+...  ..+.+  .+.+|..|..    ..++.+|..+|.++....- . ..+.+++|.+|..-.     
T Consensus        92 ~~~~A~~~~~~~a~~--g~~~a--~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~  167 (292)
T COG0790          92 DKTKAADWYRCAAAD--GLAEA--LFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV  167 (292)
T ss_pred             cHHHHHHHHHHHhhc--ccHHH--HHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence            355555555533322  23333  3355555555    3356666666666655532 2 233555555554421     


Q ss_pred             --CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Q 013696          132 --RFQEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLEP  182 (438)
Q Consensus       132 --~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~----lg~~~eA~~~~~~al~l~P  182 (438)
                        +...|...|.++-...  ++.+.+++|.+|..    -.++.+|..+|.++-....
T Consensus       168 ~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         168 AYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             cHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence              2224555555555544  55556666655543    1255566666666655544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=92.94  E-value=0.26  Score=50.59  Aligned_cols=90  Identities=17%  Similarity=-0.002  Sum_probs=76.5

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHh---ccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ---KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE  135 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~---g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~e  135 (438)
                      ..+....|+..|.+++...|.....  +-+.+.++++.   |+.-.|+.....|++++|. ..+++.++.++..++++.+
T Consensus       386 y~~~~~~~i~~~s~a~q~~~~~~~~--l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e  463 (758)
T KOG1310|consen  386 YESIVSGAISHYSRAIQYVPDAIYL--LENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE  463 (758)
T ss_pred             hhHHHHHHHHHHHHHhhhccchhHH--HHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHH
Confidence            4456788999999999988877666  55778887774   5677888889999999999 8999999999999999999


Q ss_pred             HHHHHHHHhhcCCccH
Q 013696          136 AEDDCTEALNLDDRYI  151 (438)
Q Consensus       136 A~~~~~~al~l~p~~~  151 (438)
                      |+.+...+....|.+.
T Consensus       464 al~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  464 ALSCHWALQMSFPTDV  479 (758)
T ss_pred             hhhhHHHHhhcCchhh
Confidence            9999998888888654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.58  E-value=3.1  Score=40.93  Aligned_cols=113  Identities=19%  Similarity=0.143  Sum_probs=89.7

Q ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc--C-C------
Q 013696           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEALNL--D-D------  148 (438)
Q Consensus        83 ~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~l~~~~eA~~~~~~al~l--~-p------  148 (438)
                      .+..+...+..+.+.|.++.|...+.++...++.     +.+....+..+...|+..+|+..+...+..  . +      
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~  224 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN  224 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence            3445789999999999999999999999987632     566777788899999999999988888761  0 0      


Q ss_pred             -------------------------ccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013696          149 -------------------------RYIKAYSRRATARKEL------GKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (438)
Q Consensus       149 -------------------------~~~~a~~~lg~a~~~l------g~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  195 (438)
                                               ...++++.+|.....+      +.+++++..|..++.++|....++..++...
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~  302 (352)
T PF02259_consen  225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN  302 (352)
T ss_pred             HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence                                     1145677888877777      8889999999999999998887766655443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=92.48  E-value=3.2  Score=39.96  Aligned_cols=116  Identities=17%  Similarity=0.019  Sum_probs=83.3

Q ss_pred             CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc-------cHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----h
Q 013696           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK-------KFKEAIDCYSRSIALSPTAVAYANRAMAYLK----L  130 (438)
Q Consensus        62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g-------~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~----l  130 (438)
                      .++.+|..+|.++-...-... +...+.+|..|..-.       +...|+..|.++.... .+.+.+++|.+|..    .
T Consensus       127 ~d~~~A~~~~~~Aa~~g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-~~~a~~~lg~~y~~G~Gv~  204 (292)
T COG0790         127 LDLVKALKYYEKAAKLGNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-NPDAQLLLGRMYEKGLGVP  204 (292)
T ss_pred             cCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-CHHHHHHHHHHHHcCCCCC
Confidence            388999999999988753221 233557777776641       3347888998887755 47788889988865    3


Q ss_pred             cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhhCC
Q 013696          131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG---------------KLKESIEDSEFALRLEP  182 (438)
Q Consensus       131 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg---------------~~~eA~~~~~~al~l~P  182 (438)
                      .++.+|..+|.+|-....  ..++++++ ++...|               +...|..++..+-...+
T Consensus       205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  268 (292)
T COG0790         205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF  268 (292)
T ss_pred             cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence            489999999999999887  88899999 666555               44555555555544443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=92.43  E-value=2.1  Score=42.93  Aligned_cols=98  Identities=14%  Similarity=0.007  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhcc----CCC-HHHHHHHHHHHHH---hcCHHHHHHHHHH-HhhcCCccHHHHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIAL----SPT-AVAYANRAMAYLK---LRRFQEAEDDCTE-ALNLDDRYIKAYSRR  157 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~----~p~-~~~~~~la~~~~~---l~~~~eA~~~~~~-al~l~p~~~~a~~~l  157 (438)
                      ..++-..|....+|+.=+...+..-.+    .+. ..+.+..|.++.+   .|+.++|+..+.. .....+.++..+..+
T Consensus       144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~  223 (374)
T PF13281_consen  144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL  223 (374)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence            456667788888998888887766555    222 5667777888888   8999999999988 445567788899999


Q ss_pred             HHHHHHc---------CCHHHHHHHHHHHHhhCCCC
Q 013696          158 ATARKEL---------GKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       158 g~a~~~l---------g~~~eA~~~~~~al~l~P~~  184 (438)
                      |.+|..+         ...++|+.+|.+++.++|+.
T Consensus       224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            9888643         23578888888888888654

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.41  E-value=0.21  Score=32.58  Aligned_cols=30  Identities=27%  Similarity=0.339  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696          152 KAYSRRATARKELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       152 ~a~~~lg~a~~~lg~~~eA~~~~~~al~l~  181 (438)
                      .+|..+|.+-...++|++|+.+|.++|.+.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            457778888888888888888888888663

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.22  E-value=1.8  Score=46.02  Aligned_cols=123  Identities=15%  Similarity=0.029  Sum_probs=90.2

Q ss_pred             cCCCCCCcCcCC------CccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc---cHHHHHHHHHHHhccCCCHHHHH
Q 013696           51 AKKPSPSGNSYS------RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK---KFKEAIDCYSRSIALSPTAVAYA  121 (438)
Q Consensus        51 ~~~~~~~~y~~g------~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g---~y~~Ai~~y~~al~~~p~~~~~~  121 (438)
                      +..++|.+|..|      ++..|..+|.++-...  ++.+  .+.+|.++..-.   ++..|..+|..|.... ...+++
T Consensus       290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a--~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~  364 (552)
T KOG1550|consen  290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDA--QYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIY  364 (552)
T ss_pred             cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchH--HHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHH
Confidence            445666666322      6778999999988766  4556  558899988765   6889999999987632 277888


Q ss_pred             HHHHHHHHh----cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Q 013696          122 NRAMAYLKL----RRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL-GKLKESIEDSEFALRL  180 (438)
Q Consensus       122 ~la~~~~~l----~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l-g~~~eA~~~~~~al~l  180 (438)
                      ++|.||..-    .+...|..++.++...+  ++.+.+.++..+... +++..+...+...-.+
T Consensus       365 ~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~  426 (552)
T KOG1550|consen  365 RLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL  426 (552)
T ss_pred             HHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence            899998753    48999999999999987  677777777766544 7777666555544333

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=91.93  E-value=7.5  Score=39.66  Aligned_cols=136  Identities=13%  Similarity=0.086  Sum_probs=92.3

Q ss_pred             cCCC-ccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHH--HHHHhcc---------CCC----HHHHHHH
Q 013696           60 SYSR-NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDC--YSRSIAL---------SPT----AVAYANR  123 (438)
Q Consensus        60 ~~g~-~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~--y~~al~~---------~p~----~~~~~~l  123 (438)
                      ..|. -++|++.++.++...+.+.....    -...+-...|.+|+..  +.+.+.+         .|-    ...-..+
T Consensus       391 ~~g~~dekalnLLk~il~ft~yD~ec~n----~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L  466 (549)
T PF07079_consen  391 EIGQCDEKALNLLKLILQFTNYDIECEN----IVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL  466 (549)
T ss_pred             hcCCccHHHHHHHHHHHHhccccHHHHH----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence            4554 77889999999888877765422    2333444556666543  2333332         222    2332223


Q ss_pred             --HHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 013696          124 --AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE  201 (438)
Q Consensus       124 --a~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ka  201 (438)
                        |.-++..|+|.++..+..=..+++| .+.+|..+|.++...++|++|..++..   +-|++........+|..+..+-
T Consensus       467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh  542 (549)
T PF07079_consen  467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKH  542 (549)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHh
Confidence              4567789999999999999999999 899999999999999999999998864   4443333344666777766654


Q ss_pred             Hh
Q 013696          202 VF  203 (438)
Q Consensus       202 ~~  203 (438)
                      +.
T Consensus       543 ~~  544 (549)
T PF07079_consen  543 LP  544 (549)
T ss_pred             hh
Confidence            43

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=91.59  E-value=0.68  Score=36.72  Aligned_cols=30  Identities=27%  Similarity=0.356  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696          152 KAYSRRATARKELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       152 ~a~~~lg~a~~~lg~~~eA~~~~~~al~l~  181 (438)
                      .+..++|.++...|++++|+..+++++++.
T Consensus        42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen   42 YALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            344555555555566666666666655554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.55  E-value=1.1  Score=39.26  Aligned_cols=73  Identities=12%  Similarity=0.027  Sum_probs=61.0

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ  134 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~  134 (438)
                      ..++.+++...+.-.--+.|+.+....  ..|+.++..|+|.+|+..++......|. +.+-..++.|+..+++..
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~--~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDL--FDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHH--HHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence            345677777887777778999999854  8899999999999999999998888887 777788899998888743

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=91.50  E-value=1.4  Score=33.71  Aligned_cols=59  Identities=12%  Similarity=0.168  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALN  145 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~  145 (438)
                      ....|.-++...+..+|+..++++++..++    -.++..+..+|...|+|.+.+.+.-+=+.
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            557788888888888899999888887766    34455556777788888887776554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.47  E-value=2.3  Score=40.96  Aligned_cols=99  Identities=17%  Similarity=0.117  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHH---HHHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR---RATARK  162 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~---lg~a~~  162 (438)
                      -...|......|++.+|...|..++...|. ..+...++.||+..|+++.|...+...=.-..  .+.+..   .-..+.
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~--~~~~~~l~a~i~ll~  214 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ--DKAAHGLQAQIELLE  214 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch--hhHHHHHHHHHHHHH
Confidence            346778889999999999999999999998 89999999999999999998776665322111  122222   112233


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696          163 ELGKLKESIEDSEFALRLEPQNQEIK  188 (438)
Q Consensus       163 ~lg~~~eA~~~~~~al~l~P~~~~~~  188 (438)
                      ......+ ...+.+.+.-+|++.++.
T Consensus       215 qaa~~~~-~~~l~~~~aadPdd~~aa  239 (304)
T COG3118         215 QAAATPE-IQDLQRRLAADPDDVEAA  239 (304)
T ss_pred             HHhcCCC-HHHHHHHHHhCCCCHHHH
Confidence            3333222 246778889999998873

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=91.32  E-value=0.82  Score=43.58  Aligned_cols=40  Identities=20%  Similarity=0.160  Sum_probs=15.2

Q ss_pred             HHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 013696          105 DCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEAL  144 (438)
Q Consensus       105 ~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al  144 (438)
                      .+|.+|+.+.|. ...|..+|.++...|+.-.|+-+|-+++
T Consensus         3 ~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl   43 (278)
T PF10373_consen    3 RYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSL   43 (278)
T ss_dssp             HHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHH
Confidence            334444444443 3334444444333344444444344433

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=91.23  E-value=1.4  Score=34.97  Aligned_cols=59  Identities=22%  Similarity=0.281  Sum_probs=48.8

Q ss_pred             HHHHHhccHHHHHHHHHHHhccCCC----------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc
Q 013696           92 NECFKQKKFKEAIDCYSRSIALSPT----------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY  150 (438)
Q Consensus        92 ~~~~~~g~y~~Ai~~y~~al~~~p~----------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~  150 (438)
                      ....+.|+|..|++.+.+.+.....          ..+..++|.++...|++++|+..++.|+.+....
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            3457889999999998888876422          3667889999999999999999999999886554

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.94  E-value=0.77  Score=29.53  Aligned_cols=33  Identities=24%  Similarity=0.136  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCC
Q 013696          152 KAYSRRATARKELGKLKESIED--SEFALRLEPQN  184 (438)
Q Consensus       152 ~a~~~lg~a~~~lg~~~eA~~~--~~~al~l~P~~  184 (438)
                      +.++.+|..+...|+|++|+..  |+-+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4566667777777777777777  43666666543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=90.75  E-value=0.26  Score=49.25  Aligned_cols=90  Identities=19%  Similarity=0.161  Sum_probs=70.6

Q ss_pred             CCCcCcCCCccchHHHHHhhhcCCC--------CChh--------HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-H
Q 013696           55 SPSGNSYSRNYDPVSHISSSLMNEE--------STPD--------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A  117 (438)
Q Consensus        55 ~~~~y~~g~~~eAi~~~~~al~~~p--------~~~~--------a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~  117 (438)
                      ...+|++++|..|+..|..+|++-.        ..+.        ....-.+..||.+.++.+.|+.+-.++|.++|. .
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            3344788888888888888877421        1111        122446788999999999999999999999998 8


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 013696          118 VAYANRAMAYLKLRRFQEAEDDCTEAL  144 (438)
Q Consensus       118 ~~~~~la~~~~~l~~~~eA~~~~~~al  144 (438)
                      .-+...|.|+..+.+|.+|-.-+.-|.
T Consensus       263 rnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999977666554

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=90.58  E-value=1.9  Score=44.31  Aligned_cols=87  Identities=13%  Similarity=0.058  Sum_probs=72.4

Q ss_pred             chHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC-HHHHHHHHHHH
Q 013696           66 DPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR-FQEAEDDCTEA  143 (438)
Q Consensus        66 eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~-~~eA~~~~~~a  143 (438)
                      .-...|+.++...+.+...  |......+.+.+.|.+--..|.+++...|+ +.+|..-|.-.+..+. .+.|...+.++
T Consensus        89 rIv~lyr~at~rf~~D~~l--W~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKL--WLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHH--HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            3456889999888777776  557766667777799999999999999999 8898888877777665 99999999999


Q ss_pred             hhcCCccHHHH
Q 013696          144 LNLDDRYIKAY  154 (438)
Q Consensus       144 l~l~p~~~~a~  154 (438)
                      |+.+|++++.|
T Consensus       167 LR~npdsp~Lw  177 (568)
T KOG2396|consen  167 LRFNPDSPKLW  177 (568)
T ss_pred             hhcCCCChHHH
Confidence            99999998764

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.31  E-value=0.45  Score=31.04  Aligned_cols=29  Identities=24%  Similarity=0.305  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 013696          118 VAYANRAMAYLKLRRFQEAEDDCTEALNL  146 (438)
Q Consensus       118 ~~~~~la~~~~~l~~~~eA~~~~~~al~l  146 (438)
                      .+|..+|.+.+..++|.+|+.+|.+++.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45667777777777788888877777765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.26  E-value=1.7  Score=41.36  Aligned_cols=73  Identities=18%  Similarity=0.206  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  159 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~  159 (438)
                      ..++=..+...++++.|..+-.+.+.++|. +.-+.-+|.+|.++|-+.-|+.+++..+..-|+.+.+-.-++.
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            456667788899999999999999999999 8889999999999999999999999999999999877655543

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.19  E-value=4.4  Score=38.44  Aligned_cols=104  Identities=15%  Similarity=0.192  Sum_probs=83.0

Q ss_pred             HHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc-CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH-HHH
Q 013696           95 FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK-ESI  171 (438)
Q Consensus        95 ~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~-~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~-eA~  171 (438)
                      .+...-..|+..-..+|.++|. -.+|..+-.|+..++ +..+-+++++..+.-+|.|...|+-+-.+...+|++. .-+
T Consensus        54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL  133 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL  133 (318)
T ss_pred             hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence            3445556778888889999998 666766666666665 6777889999999999999999999999999999988 788


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013696          172 EDSEFALRLEPQNQEIKKQLAEVKSLY  198 (438)
Q Consensus       172 ~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (438)
                      +....++..+..|-.++....=+.+.|
T Consensus       134 ef~~~~l~~DaKNYHaWshRqW~~r~F  160 (318)
T KOG0530|consen  134 EFTKLMLDDDAKNYHAWSHRQWVLRFF  160 (318)
T ss_pred             HHHHHHHhccccchhhhHHHHHHHHHH
Confidence            999999999998887765544444433

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=89.79  E-value=8.9  Score=37.79  Aligned_cols=111  Identities=11%  Similarity=-0.014  Sum_probs=79.3

Q ss_pred             HHHHhhhcCCCCChhHHHHHHHHHHHHHh------------ccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHH
Q 013696           69 SHISSSLMNEESTPDATSEKELGNECFKQ------------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE  135 (438)
Q Consensus        69 ~~~~~al~~~p~~~~a~~~~~~g~~~~~~------------g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~e  135 (438)
                      ..|++.+..+|.+..+  |..+....-..            .-.+..+..|++||+.+|+ ..++..+-.++.+..+-+.
T Consensus         6 ~el~~~v~~~P~di~~--Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~   83 (321)
T PF08424_consen    6 AELNRRVRENPHDIEA--WLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEK   83 (321)
T ss_pred             HHHHHHHHhCcccHHH--HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Confidence            4577888889998887  33444332221            2256778899999999998 6666666666677778888


Q ss_pred             HHHHHHHHhhcCCccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhC
Q 013696          136 AEDDCTEALNLDDRYIKAYSRRATARK---ELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       136 A~~~~~~al~l~p~~~~a~~~lg~a~~---~lg~~~eA~~~~~~al~l~  181 (438)
                      ...-.++++..+|+++..|..+-....   ..-.+......|.++|+.-
T Consensus        84 l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L  132 (321)
T PF08424_consen   84 LAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRAL  132 (321)
T ss_pred             HHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence            899999999999999887765443333   2345778888888887654

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.63  E-value=9.6  Score=39.24  Aligned_cols=122  Identities=15%  Similarity=0.057  Sum_probs=90.9

Q ss_pred             cCCCccchHHHHHhhhcCCC-CChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----------HHHHHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEE-STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----------AVAYANRAMAY  127 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p-~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----------~~~~~~la~~~  127 (438)
                      ..+.|+.|...|..+++.-. .+..+..-.++|..|.+.|+-+.--+..+.   +.|.           +.+++..|.-.
T Consensus       379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfa  455 (629)
T KOG2300|consen  379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFA  455 (629)
T ss_pred             hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHH
Confidence            67889999999999987542 233444456889999998876553333322   3332           56788889999


Q ss_pred             HHhcCHHHHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          128 LKLRRFQEAEDDCTEALNLDDR------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       128 ~~l~~~~eA~~~~~~al~l~p~------~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      ++.+++.||.....+.+++...      ..-.+..+|.+..-+|+..++....+-++.+....
T Consensus       456 f~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi  518 (629)
T KOG2300|consen  456 FKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI  518 (629)
T ss_pred             HHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC
Confidence            9999999999999999987621      12345567888889999999999999999887443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=89.50  E-value=1.1  Score=42.60  Aligned_cols=62  Identities=15%  Similarity=0.048  Sum_probs=50.9

Q ss_pred             HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013696          136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL  197 (438)
Q Consensus       136 A~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~  197 (438)
                      |+.+|.+|+.+.|++...|+.+|.++...|+.-.|+-+|-+++...-..+.+..++......
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999998776667777666655543

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.48  E-value=2.1  Score=42.93  Aligned_cols=91  Identities=16%  Similarity=0.168  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC----C----ccHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLD----D----RYIKAY  154 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~----p----~~~~a~  154 (438)
                      +.++|.-|...|+.+.|+++|.++-.....    ...+.|+-.+-..+|+|..-..+-.+|.+.-    .    -.++..
T Consensus       153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~  232 (466)
T KOG0686|consen  153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK  232 (466)
T ss_pred             HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Confidence            679999999999999999999997666554    6678888888889999998888888777651    0    123456


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Q 013696          155 SRRATARKELGKLKESIEDSEFA  177 (438)
Q Consensus       155 ~~lg~a~~~lg~~~eA~~~~~~a  177 (438)
                      ..-|.+...+++|..|..+|-.+
T Consensus       233 C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  233 CAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC
Confidence            66778888888999998887554

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=89.02  E-value=4.6  Score=34.95  Aligned_cols=80  Identities=13%  Similarity=-0.016  Sum_probs=60.5

Q ss_pred             HHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Q 013696           89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL  167 (438)
Q Consensus        89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~  167 (438)
                      .....-...++.+++.......--+.|+ +.+-..-|..+...|+|.+|+..++....-.+..+.+--.++.|++.+|+.
T Consensus        15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            4444444577777777777776667788 777777788888888888888888888887777777777788888888875


Q ss_pred             H
Q 013696          168 K  168 (438)
Q Consensus       168 ~  168 (438)
                      .
T Consensus        95 ~   95 (153)
T TIGR02561        95 E   95 (153)
T ss_pred             H
Confidence            3

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=88.89  E-value=7  Score=37.62  Aligned_cols=94  Identities=18%  Similarity=0.183  Sum_probs=69.8

Q ss_pred             HHHhccHHHHHHHHHHHhccC----CC-----HHHHHHHHHHHHHhc-CHHHHHHHHHHHhhc----CC---c-------
Q 013696           94 CFKQKKFKEAIDCYSRSIALS----PT-----AVAYANRAMAYLKLR-RFQEAEDDCTEALNL----DD---R-------  149 (438)
Q Consensus        94 ~~~~g~y~~Ai~~y~~al~~~----p~-----~~~~~~la~~~~~l~-~~~eA~~~~~~al~l----~p---~-------  149 (438)
                      ..++|+++.|..+|.++-...    |+     +..+++.|...+..+ +++.|..++++|+.+    ..   .       
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            367899999999999887643    54     678999999999999 999999999999987    22   1       


Q ss_pred             cHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCCHHH
Q 013696          150 YIKAYSRRATARKELGKLK---ESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       150 ~~~a~~~lg~a~~~lg~~~---eA~~~~~~al~l~P~~~~~  187 (438)
                      ....+..++.+|...+.++   +|...++.+-.-.|+.+..
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~  123 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEV  123 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHH
Confidence            1345777888998888765   3444444444445665544

It is also involved in sporulation [].

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=88.89  E-value=6.4  Score=38.78  Aligned_cols=119  Identities=8%  Similarity=0.011  Sum_probs=84.4

Q ss_pred             ccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHH---HHHHHhcCHHHHHHH
Q 013696           64 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA---MAYLKLRRFQEAEDD  139 (438)
Q Consensus        64 ~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la---~~~~~l~~~~eA~~~  139 (438)
                      .+.-+..|++||..+|++....  ..+-..+.+..+-+.....+++++..+|+ ..+|...-   ...+..-.+......
T Consensus        47 ~E~klsilerAL~~np~~~~L~--l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~  124 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLL--LGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV  124 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            4556889999999999877763  34445556667788888999999999998 55543322   222223356677777


Q ss_pred             HHHHhhcC------------------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          140 CTEALNLD------------------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       140 ~~~al~l~------------------p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      |.+++..-                  ......+.+++.-....|..+.|+..++-.++++=-.
T Consensus       125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~  187 (321)
T PF08424_consen  125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFR  187 (321)
T ss_pred             HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCC
Confidence            77776431                  1124567788888899999999999999999998433

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=87.16  E-value=15  Score=37.05  Aligned_cols=131  Identities=17%  Similarity=0.112  Sum_probs=94.5

Q ss_pred             chHHHHHhhhcCCCCChhHHHHHHHHH----------HHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc--C
Q 013696           66 DPVSHISSSLMNEESTPDATSEKELGN----------ECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR--R  132 (438)
Q Consensus        66 eAi~~~~~al~~~p~~~~a~~~~~~g~----------~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~--~  132 (438)
                      ++++.-.+.+..+|....++.+.....          -..+..-.++-+.+...++..+|+ ..+|+.+..++.+.+  +
T Consensus        47 e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~  126 (421)
T KOG0529|consen   47 EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSD  126 (421)
T ss_pred             HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCch
Confidence            455666666677776655533222111          112233467778889999999999 889999999998877  4


Q ss_pred             HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696          133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGK----LKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (438)
Q Consensus       133 ~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~----~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  196 (438)
                      +..=+..|.++++.||.+.-+|..+-.+......    ..+=+++..+++.-++.|-.+|....-++.
T Consensus       127 ~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  127 WNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             HHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence            7888999999999999999888766655554433    467788888999889999888766555544

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=87.03  E-value=2.8  Score=42.49  Aligned_cols=96  Identities=23%  Similarity=0.250  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccC--------CC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALS--------PT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  156 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~--------p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~  156 (438)
                      +..+...+.-.|+|..|++.... |.++        |.  ...++..|-||+.+++|.+|+..|...+..-...-..+..
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~  203 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQ  203 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            34555667789999999998654 2222        22  4678899999999999999999999887432221111122


Q ss_pred             HHHHHHH-cCCHHHHHHHHHHHHhhCCC
Q 013696          157 RATARKE-LGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       157 lg~a~~~-lg~~~eA~~~~~~al~l~P~  183 (438)
                      +..-+-. .+..++....+--++.+.|.
T Consensus       204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~  231 (404)
T PF10255_consen  204 RSYQYDQINKKNEQMYALLAICLSLCPQ  231 (404)
T ss_pred             ccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence            2222222 24456666677777777785

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.82  E-value=3  Score=36.07  Aligned_cols=71  Identities=10%  Similarity=0.003  Sum_probs=57.8

Q ss_pred             CCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCH
Q 013696           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF  133 (438)
Q Consensus        61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~  133 (438)
                      .++.+++...+...--+.|+.+....  .-|..++..|+|.+|+..++....-.+. +..-..++.|+..+|+.
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~--~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDM--FDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccch--hHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            45666777777666668899988854  8899999999999999999999887777 77777788898888764

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=86.78  E-value=5.1  Score=40.18  Aligned_cols=37  Identities=19%  Similarity=0.121  Sum_probs=25.5

Q ss_pred             hhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhc
Q 013696           74 SLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA  112 (438)
Q Consensus        74 al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~  112 (438)
                      .|..+|-+.+.  +..++.++..+|+++.|.+..++||-
T Consensus        32 ll~~~PyHidt--Llqls~v~~~~gd~~~A~~lleRALf   68 (360)
T PF04910_consen   32 LLQKNPYHIDT--LLQLSEVYRQQGDHAQANDLLERALF   68 (360)
T ss_pred             HHHHCCCcHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34455666666  56778888888887777777777654

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=86.66  E-value=3.5  Score=44.08  Aligned_cols=81  Identities=16%  Similarity=0.109  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 013696           85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL  164 (438)
Q Consensus        85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l  164 (438)
                      .++.++|..+.....|++|.++|..+-..       -+...||+++..|++-+....    .=|++.+.+-.+|.++...
T Consensus       797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------e~~~ecly~le~f~~LE~la~----~Lpe~s~llp~~a~mf~sv  865 (1189)
T KOG2041|consen  797 DAFRNIGETFAEMMEWEEAAKYYSYCGDT-------ENQIECLYRLELFGELEVLAR----TLPEDSELLPVMADMFTSV  865 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccch-------HhHHHHHHHHHhhhhHHHHHH----hcCcccchHHHHHHHHHhh
Confidence            33677888888888888888888765332       345667777777776444332    2377778888889999999


Q ss_pred             CCHHHHHHHHHH
Q 013696          165 GKLKESIEDSEF  176 (438)
Q Consensus       165 g~~~eA~~~~~~  176 (438)
                      |.-++|++.|-+
T Consensus       866 GMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  866 GMCDQAVEAYLR  877 (1189)
T ss_pred             chHHHHHHHHHh
Confidence            999999888754

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=85.89  E-value=0.61  Score=45.74  Aligned_cols=109  Identities=15%  Similarity=0.065  Sum_probs=82.5

Q ss_pred             CcCCCccchHHHHHhhhcCCC---CC------------h--hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEE---ST------------P--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAY  120 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p---~~------------~--~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~  120 (438)
                      |..++|..|..-|.+++..-.   ..            .  ......+.+.+-++.+.|..|+..-..+++.++. ..++
T Consensus       233 ~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~  312 (372)
T KOG0546|consen  233 FKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAH  312 (372)
T ss_pred             hhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHH
Confidence            366777777777766654211   00            0  0111446778888899999999988888887777 8999


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Q 013696          121 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL  167 (438)
Q Consensus       121 ~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~  167 (438)
                      +.++..|..+.++++|++++..+....|++......+..+......+
T Consensus       313 ~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~  359 (372)
T KOG0546|consen  313 YRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY  359 (372)
T ss_pred             HHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence            99999999999999999999999999999988777666666555544

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=85.82  E-value=9.1  Score=39.34  Aligned_cols=112  Identities=12%  Similarity=0.157  Sum_probs=87.0

Q ss_pred             HHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH
Q 013696           94 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE  172 (438)
Q Consensus        94 ~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~  172 (438)
                      .+..|+.-.|-.-...+++..|. +.....++.++..+|.|+.|..+..-+-.+-....++..-+-....++|++++|..
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence            45578888888888899998888 77777889999999999999998877766555555565556666789999999998


Q ss_pred             HHHHHHhhCCCCHH----------HHHHHHHHHHHHHHHHhhc
Q 013696          173 DSEFALRLEPQNQE----------IKKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       173 ~~~~al~l~P~~~~----------~~~~l~~a~~~~~ka~~~~  205 (438)
                      .-.-.|.-+-.+++          .++..+++.-.+.+...++
T Consensus       379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~  421 (831)
T PRK15180        379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN  421 (831)
T ss_pred             HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence            88777755544444          3777788888887776665

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=85.61  E-value=1.2  Score=26.16  Aligned_cols=18  Identities=22%  Similarity=0.030  Sum_probs=7.3

Q ss_pred             HHHHHHHHHcCCHHHHHH
Q 013696          155 SRRATARKELGKLKESIE  172 (438)
Q Consensus       155 ~~lg~a~~~lg~~~eA~~  172 (438)
                      +.+|.++...|++++|..
T Consensus         5 ~~la~~~~~~G~~~eA~~   22 (26)
T PF07721_consen    5 LALARALLAQGDPDEAER   22 (26)
T ss_pred             HHHHHHHHHcCCHHHHHH
Confidence            334444444444444433

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=85.41  E-value=1.1  Score=26.30  Aligned_cols=24  Identities=29%  Similarity=-0.006  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHH
Q 013696          118 VAYANRAMAYLKLRRFQEAEDDCT  141 (438)
Q Consensus       118 ~~~~~la~~~~~l~~~~eA~~~~~  141 (438)
                      .+.+++|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            568899999999999999998775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=85.36  E-value=4  Score=41.59  Aligned_cols=56  Identities=16%  Similarity=0.200  Sum_probs=49.4

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013696           88 KELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA  143 (438)
Q Consensus        88 ~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~~~~a  143 (438)
                      ..-|..+|.+|+|.++..+-.-..++.|.+.+|..+|.|++...+|++|-.++...
T Consensus       466 LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  466 LADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            34455678899999999998889999999999999999999999999999887654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=85.25  E-value=5  Score=38.63  Aligned_cols=64  Identities=19%  Similarity=0.093  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL  180 (438)
Q Consensus       117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l  180 (438)
                      ..++..++..+...++++.++..+++.+.++|-+-.+|.++-.+|...|+...|+..|++.-.+
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            5677888999999999999999999999999999999999999999999999999999987664

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=85.06  E-value=5.4  Score=42.93  Aligned_cols=115  Identities=16%  Similarity=0.038  Sum_probs=73.9

Q ss_pred             CCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhc
Q 013696           53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR  131 (438)
Q Consensus        53 ~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~  131 (438)
                      ..++.-| ..|+|+-|.++|.++-.          .+.--..|-+.|+|.+|.+.-.++..-......|...+.-+-..|
T Consensus       769 ~~iadhyan~~dfe~ae~lf~e~~~----------~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehg  838 (1636)
T KOG3616|consen  769 GEIADHYANKGDFEIAEELFTEADL----------FKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHG  838 (1636)
T ss_pred             hHHHHHhccchhHHHHHHHHHhcch----------hHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhc
Confidence            3444556 78999999999877522          223345667789999988877766442222566777777777777


Q ss_pred             CHHHHHHHH------HHHhhcC-----------------Cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013696          132 RFQEAEDDC------TEALNLD-----------------DR-YIKAYSRRATARKELGKLKESIEDSEFA  177 (438)
Q Consensus       132 ~~~eA~~~~------~~al~l~-----------------p~-~~~a~~~lg~a~~~lg~~~eA~~~~~~a  177 (438)
                      +|.+|++.|      .+||++.                 |+ ......++|.-|...|+.+.|...|-++
T Consensus       839 kf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea  908 (1636)
T KOG3616|consen  839 KFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA  908 (1636)
T ss_pred             chhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence            777765543      2222221                 11 1345677888888888888888777655

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=84.74  E-value=2.6  Score=27.07  Aligned_cols=20  Identities=25%  Similarity=0.383  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHhccHHHHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDC  106 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~  106 (438)
                      ++.+|..++.+|+|++|+..
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHH
Confidence            44555555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=83.99  E-value=46  Score=35.89  Aligned_cols=122  Identities=11%  Similarity=0.059  Sum_probs=86.4

Q ss_pred             cchHHHHHhhhcCCC--CChhHHHHHHHHHHHH-HhccHHHHHHHHHHHhccCC--C-----HHHHHHHHHHHHHhcCHH
Q 013696           65 YDPVSHISSSLMNEE--STPDATSEKELGNECF-KQKKFKEAIDCYSRSIALSP--T-----AVAYANRAMAYLKLRRFQ  134 (438)
Q Consensus        65 ~eAi~~~~~al~~~p--~~~~a~~~~~~g~~~~-~~g~y~~Ai~~y~~al~~~p--~-----~~~~~~la~~~~~l~~~~  134 (438)
                      ..|+.+++-+++..+  ...++.....+|.+++ ...+++.|..+..+++.+..  +     -.+.+-++.+|.+.+...
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            346777777774222  2345677889999988 67899999999999988863  3     344566788888888777


Q ss_pred             HHHHHHHHHhhcCCc----cHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhC--CCCHHH
Q 013696          135 EAEDDCTEALNLDDR----YIKAYSRRA--TARKELGKLKESIEDSEFALRLE--PQNQEI  187 (438)
Q Consensus       135 eA~~~~~~al~l~p~----~~~a~~~lg--~a~~~lg~~~eA~~~~~~al~l~--P~~~~~  187 (438)
                       |...++++|..-.+    .....+++-  ..+...+++..|++.++....+.  .+++.+
T Consensus       118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~  177 (608)
T PF10345_consen  118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV  177 (608)
T ss_pred             -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence             99999999987544    233334433  22223379999999999998877  455544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.93  E-value=13  Score=39.50  Aligned_cols=71  Identities=14%  Similarity=0.021  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696          118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (438)
Q Consensus       118 ~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~------~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~  188 (438)
                      .++.|-|.-+++..+|..++++|...+..-|.+      .+....++.||.++.+.+.|+++++.|-+.+|.++-.+
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q  431 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ  431 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence            456677888999999999999999999876643      67788999999999999999999999999999887543

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=83.91  E-value=12  Score=37.81  Aligned_cols=125  Identities=16%  Similarity=0.134  Sum_probs=92.8

Q ss_pred             CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhcc--HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh-cC---HH
Q 013696           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKK--FKEAIDCYSRSIALSPT-AVAYANRAMAYLKL-RR---FQ  134 (438)
Q Consensus        62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~--y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l-~~---~~  134 (438)
                      .-+++-+.+...++..+|+...+  |+.+..++.+.+.  +..=+....++++.+|. -.+|..+=.++... ..   ..
T Consensus        89 ~~ld~eL~~~~~~L~~npksY~a--W~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~  166 (421)
T KOG0529|consen   89 ALLDEELKYVESALKVNPKSYGA--WHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEK  166 (421)
T ss_pred             HhhHHHHHHHHHHHHhCchhHHH--HHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccch
Confidence            35677788899999999998888  7788898887764  57788999999999998 44443333333222 22   66


Q ss_pred             HHHHHHHHHhhcCCccHHHHHHHHHHHHHc------CC------HHHHHHHHHHHHhhCCCCHHHH
Q 013696          135 EAEDDCTEALNLDDRYIKAYSRRATARKEL------GK------LKESIEDSEFALRLEPQNQEIK  188 (438)
Q Consensus       135 eA~~~~~~al~l~p~~~~a~~~lg~a~~~l------g~------~~eA~~~~~~al~l~P~~~~~~  188 (438)
                      +=+++++++|.-++.|.-||+.+..++..+      |+      ...-++....|+-.+|++..++
T Consensus       167 ~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~W  232 (421)
T KOG0529|consen  167 EELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCW  232 (421)
T ss_pred             hHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcccccee
Confidence            778899999999999999999999888732      31      2345556666777777776664

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=83.31  E-value=21  Score=31.93  Aligned_cols=76  Identities=18%  Similarity=0.090  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHH
Q 013696          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR---YIKAYSRRATARKELGKLKESIEDSEFALRLE--PQNQEIKKQL  191 (438)
Q Consensus       117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~---~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~--P~~~~~~~~l  191 (438)
                      ..++..+|.-|.+.|+++.|++.|.++......   -...++++-.+....|++..+..++.++-.+-  +++.+....+
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            678999999999999999999999998876532   24667888888889999999999999987664  3444444444


Q ss_pred             H
Q 013696          192 A  192 (438)
Q Consensus       192 ~  192 (438)
                      .
T Consensus       116 k  116 (177)
T PF10602_consen  116 K  116 (177)
T ss_pred             H
Confidence            3

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=83.24  E-value=7.5  Score=42.49  Aligned_cols=63  Identities=17%  Similarity=0.050  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHh----------hcCC----------ccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013696          117 AVAYANRAMAYLKLRRFQEAEDDCTEAL----------NLDD----------RYIKAYSRRATARKELGKLKESIEDSEF  176 (438)
Q Consensus       117 ~~~~~~la~~~~~l~~~~eA~~~~~~al----------~l~p----------~~~~a~~~lg~a~~~lg~~~eA~~~~~~  176 (438)
                      -..|++.|.-+...++.+.|+++|+++-          .-+|          .+...|...|.-+...|+.+.|+.+|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            5678888888888888888888888762          2233          2345566678888888998888888877


Q ss_pred             HHh
Q 013696          177 ALR  179 (438)
Q Consensus       177 al~  179 (438)
                      |-.
T Consensus       938 A~D  940 (1416)
T KOG3617|consen  938 AKD  940 (1416)
T ss_pred             hhh
Confidence            643

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.87  E-value=3.4  Score=46.00  Aligned_cols=123  Identities=14%  Similarity=0.117  Sum_probs=70.2

Q ss_pred             cCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 013696           51 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK  129 (438)
Q Consensus        51 ~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~  129 (438)
                      .+.+++.+- ..|...+|++.|-++     +++..  |.+.-....+.|+|++-+.++.-+-+....+.+-..+-.+|.+
T Consensus      1106 vWsqlakAQL~~~~v~dAieSyika-----dDps~--y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA-----DDPSN--YLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAK 1178 (1666)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhc-----CCcHH--HHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence            345555554 567778888888665     33444  4466677777888888887776665543222222222223333


Q ss_pred             hcCHHHHHHHH----------------HH----HhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696          130 LRRFQEAEDDC----------------TE----ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL  180 (438)
Q Consensus       130 l~~~~eA~~~~----------------~~----al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l  180 (438)
                      .++..+-+...                +.    |-++--.++..|.++|..+..+|.|+.|...-++|-..
T Consensus      1179 t~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1179 TNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred             hchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence            33332221110                00    00111134556788999999999999999988887544

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=82.63  E-value=20  Score=36.12  Aligned_cols=125  Identities=11%  Similarity=0.011  Sum_probs=83.7

Q ss_pred             cCCCccchHHHHHhhhcC-CCCC------hhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc-----CCC--HHHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMN-EEST------PDATSEKELGNECFKQKKFKEAIDCYSRSIAL-----SPT--AVAYANRAM  125 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~-~p~~------~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~-----~p~--~~~~~~la~  125 (438)
                      .+.++.+|...-+..+.. .-.+      ..+..|+.+...|-..|+...--..+...+..     +..  +.+.+.+-.
T Consensus       138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr  217 (493)
T KOG2581|consen  138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR  217 (493)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence            446667766666555431 1011      12333666666777777755444444333332     222  666777788


Q ss_pred             HHHHhcCHHHHHHHHHHHhhcCC----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          126 AYLKLRRFQEAEDDCTEALNLDD----RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       126 ~~~~l~~~~eA~~~~~~al~l~p----~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      +|+..+.|+.|.....++.--+.    ..+..+|.+|.+..-+++|..|.++|-.|++..|.+
T Consensus       218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            99999999999988887763221    235567889999999999999999999999999984

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.53  E-value=6.8  Score=29.76  Aligned_cols=26  Identities=19%  Similarity=0.179  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhc
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIA  112 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~  112 (438)
                      +...|..+-+.|+|.+|+.+|+.+++
T Consensus         9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe   34 (75)
T cd02682           9 YAINAVKAEKEGNAEDAITNYKKAIE   34 (75)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            44556666667777777776655443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=82.21  E-value=14  Score=41.80  Aligned_cols=125  Identities=14%  Similarity=0.134  Sum_probs=91.2

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhH-HHHHHHHHHHHHh-------ccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQ-------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  130 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a-~~~~~~g~~~~~~-------g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l  130 (438)
                      .-..|+.|+..|++.-...|...+. .+.+..|..+..+       ..+.+|+.-|++... .|. +--|...|.+|..+
T Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  565 (932)
T PRK13184        487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRL  565 (932)
T ss_pred             hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHh
Confidence            4467999999999988888776542 2256777776553       257888888877543 344 66699999999999


Q ss_pred             cCHHHHHHHHHHHhhcCCccHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          131 RRFQEAEDDCTEALNLDDRYIKA-------YSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       131 ~~~~eA~~~~~~al~l~p~~~~a-------~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      |+|++-++++.-|++..|++|..       .+|+-.+.+..  -..|....--++.+.|.....
T Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  627 (932)
T PRK13184        566 GEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKISS  627 (932)
T ss_pred             hhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcccccc
Confidence            99999999999999999988754       34444444332  245667777788888876543

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.03  E-value=5  Score=30.48  Aligned_cols=38  Identities=11%  Similarity=-0.000  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhhc
Q 013696          168 KESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       168 ~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~ka~~~~  205 (438)
                      ++|++.+.+++.+.|+++....-...+.++.+++-.+.
T Consensus        30 ~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk   67 (75)
T cd02682          30 KKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLE   67 (75)
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666677788888876666666667666665544

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=81.92  E-value=5.7  Score=38.25  Aligned_cols=57  Identities=25%  Similarity=0.146  Sum_probs=44.5

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013696          121 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA  177 (438)
Q Consensus       121 ~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~a  177 (438)
                      .-.+..|+..|.+.+|+..+++++.++|-+-..+..+-.++..+|+--.|+..|++.
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            344677788888888888888888888888888888888888888876666666543

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=81.55  E-value=7.4  Score=36.77  Aligned_cols=61  Identities=18%  Similarity=0.151  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013696          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR------YIKAYSRRATARKELGKLKESIEDSEFA  177 (438)
Q Consensus       117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~------~~~a~~~lg~a~~~lg~~~eA~~~~~~a  177 (438)
                      ..+...+|.-|+..|+|+.|+..++.+......      .......+..|+..+|+.+..+...-+.
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            445566777777777777777777777543221      1345566677777777776666554443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=81.34  E-value=6.1  Score=26.64  Aligned_cols=25  Identities=28%  Similarity=0.178  Sum_probs=21.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Q 013696          155 SRRATARKELGKLKESIEDSEFALR  179 (438)
Q Consensus       155 ~~lg~a~~~lg~~~eA~~~~~~al~  179 (438)
                      +.+|.+|..+|+++.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5788889999999999999998884

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=81.20  E-value=16  Score=36.65  Aligned_cols=97  Identities=15%  Similarity=-0.039  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC-----ccHHHHHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD-----RYIKAYSRRA  158 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p-----~~~~a~~~lg  158 (438)
                      ++.....+.+.|-|..|+++.+-.+.++|.   -.+.+.+-...++.++|+=-+..++.......     .-|...+.++
T Consensus       106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~a  185 (360)
T PF04910_consen  106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIA  185 (360)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHH
Confidence            556667778899999999999999999997   34456666677778888877877777655211     1345678899


Q ss_pred             HHHHHcCCH---------------HHHHHHHHHHHhhCCC
Q 013696          159 TARKELGKL---------------KESIEDSEFALRLEPQ  183 (438)
Q Consensus       159 ~a~~~lg~~---------------~eA~~~~~~al~l~P~  183 (438)
                      .++..+++-               +.|...+.+|+...|.
T Consensus       186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             HHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            999999998               7888888888888774

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=80.90  E-value=8.6  Score=35.06  Aligned_cols=69  Identities=17%  Similarity=0.137  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc----cHHHHHHHHHHHHHcCCHHHHH
Q 013696          101 KEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR----YIKAYSRRATARKELGKLKESI  171 (438)
Q Consensus       101 ~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~----~~~a~~~lg~a~~~lg~~~eA~  171 (438)
                      +.|...|-++-. .|.   +...+.+|..|. ..+.+.|+..+-+++.+.+.    ++..+..++.++..+|+++.|.
T Consensus       123 ~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            556666644332 233   777777777665 56778888888888877543    4778888888888888888875

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=80.25  E-value=15  Score=28.22  Aligned_cols=61  Identities=16%  Similarity=0.138  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHH---HHHHHcCCHHHHHHHHHHHHhh
Q 013696          120 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA---TARKELGKLKESIEDSEFALRL  180 (438)
Q Consensus       120 ~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg---~a~~~lg~~~eA~~~~~~al~l  180 (438)
                      ....|.-++..++.++|+...+++++..++....+..+|   .+|...|+|.+++.+.-+-+.+
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566677888999999999999998887766555544   6678889998888776554433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=80.22  E-value=42  Score=37.24  Aligned_cols=114  Identities=21%  Similarity=0.040  Sum_probs=86.3

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHhccCC--C--------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc-----HH
Q 013696           88 KELGNECFKQKKFKEAIDCYSRSIALSP--T--------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-----IK  152 (438)
Q Consensus        88 ~~~g~~~~~~g~y~~Ai~~y~~al~~~p--~--------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~-----~~  152 (438)
                      ...++......+|.+|-.+..++..--+  .        +....-+|.+....|+++.|+..++.++..=|.+     ..
T Consensus       419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~  498 (894)
T COG2909         419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV  498 (894)
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence            4567888888999999888777655321  1        4556667899999999999999999999877654     45


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHHHHH
Q 013696          153 AYSRRATARKELGKLKESIEDSEFALRL----EPQNQEIKKQLAEVKSLYEKE  201 (438)
Q Consensus       153 a~~~lg~a~~~lg~~~eA~~~~~~al~l----~P~~~~~~~~l~~a~~~~~ka  201 (438)
                      ++...|.+..-.|++.+|..+...+.++    +...-.++..+.++.-+..++
T Consensus       499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG  551 (894)
T COG2909         499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG  551 (894)
T ss_pred             hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence            7888999999999999999999998887    443444455555555544444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	438
1wao_1	477	Pp5 Structure Length = 477		7e-17
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		3e-16
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		3e-15
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		1e-12
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-12
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		2e-11
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		3e-11
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		3e-11
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		3e-11
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		5e-10
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-09
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		3e-09
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		5e-08
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		7e-08
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		4e-07
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		7e-07
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		1e-06
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		1e-06
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		1e-06
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		1e-06
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		3e-06
2l6j_A	111	Tah1 Complexed By Meevd Length = 111		7e-06
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		9e-06
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		1e-05
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		1e-05
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		1e-05
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		2e-05
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		2e-05
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		2e-05
4gcn_A	127	N-Terminal Domain Of Stress-Induced Protein-1 (Sti-		5e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-04
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		7e-04

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146
           K   N+ FK K ++ AI  YS++I L+P+ A+ Y NR++AYL+   +  A  D T A+ L
Sbjct: 10  KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69
Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKA 206
           D +YIK Y RRA +   LGK + ++ D E  ++++P +++ K +  E   + +++ F++A
Sbjct: 70  DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA 129

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146
           K   N+ FK K ++ AI  YS++I L+P+ A+ Y NR++AYL+   +  A  D T A+ L
Sbjct: 17  KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 76
Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKA 206
           D +YIK Y RRA +   LGK + ++ D E  ++++P +++ K +  E   + +++ F++A
Sbjct: 77  DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA 136

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 75  LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF 133
           L +EE + +A   K  GNE  K + F+ A+  Y ++I L+P  AV + NRA AY KL  +
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL-- 191
             A  DC  A+ +D  Y KAY R   A   L K  E++   + AL L+P N+  K  L  
Sbjct: 63  AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122
Query: 192 AEVK 195
           AE+K
Sbjct: 123 AELK 126

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A + K LGN  +KQ  +++AI+ Y +++ L P  A A+ N   AY K   +Q+A +   +
Sbjct: 9   AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
           AL LD    KA+ RR  A  + G  +++IED + AL L+P N + K+ L   K
Sbjct: 69  ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAK 121

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 7/110 (6%)
Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTE 142
           A  EK  GNE FK+  +  A+  Y+ ++   P  A+ Y+NRA    KL  FQ A DDC  
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 143 ALNLDDRYIKAYSRRA---TARKELGKLKESIEDSEFALRLEPQNQEIKK 189
            + LD ++IK Y R+A    A +E  K + + ED   AL+++P N+E ++
Sbjct: 73  CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYED---ALQVDPSNEEARE 119

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 81  TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDD 139
           +P A   KE GN  F  +K+ EA  CY R+I  +P  AV Y NRA+ YLK+++ ++A  D
Sbjct: 1   SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60
Query: 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180
           C  AL LD + +KA+      + E+    E+I + + A  L
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 73/122 (59%), Gaps = 7/122 (5%)
Query: 80  STPDATSEKEL---GNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR 132
           +TP A+S ++L   GNE FK   +  A+  Y++++ L  T    AV + NRA  +LKL  
Sbjct: 21  ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED 80
Query: 133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 192
           + +AE + ++A+  D   +KA  RR+ A ++LG+L +++ D +  + LEP+N+  ++ L 
Sbjct: 81  YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140
Query: 193 EV 194
            +
Sbjct: 141 NI 142

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 81  TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDD 139
           +P A   KE GN  F  +K+ EA  CY R+I  +P  AV Y NRA+ YLK+++ ++A  D
Sbjct: 6   SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 65
Query: 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180
           C  AL LD + +KA+      + E+    E+I + + A  L
Sbjct: 66  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 82  PD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 139
           PD A   K  GNECF++  + +A+  Y+ +I  +P  A  Y+NRA  Y KL  FQ A  D
Sbjct: 13  PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKD 72
Query: 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
           C E + L+  +IK Y+R+A A + +    ++++  + AL L+   +E
Sbjct: 73  CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKE 119

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL LD 
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
              +A+     A  + G   E+IE  + AL L+P N E K+ L   K
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNL 146
           KE GN+        +A+ CYS +I L P   V Y+NR+ AY K   +Q+A +D  + ++L
Sbjct: 8   KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
              + K YSR+A A + L + +E+    E  L+ E  N ++K+ L  +++
Sbjct: 68  KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL L  
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 74
Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
              +A+     A  + G   E+IE  + AL L P N E K+ L   K
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAK 121

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P +A A+ N   AY K   + EA +   +AL LD 
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 192
           R  +A+     A  + G   E+IE  + AL L+P++ E    L 
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 110

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 81  TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAY-ANRAMAYLKLRRFQEAEDD 139
           TP++   K  GN    +K++ +AID Y+++++++P    Y +NRA AY    + ++A +D
Sbjct: 8   TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAED 67
Query: 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181
              A  +D +Y KA+SR   AR ++   K + E  E  +  E
Sbjct: 68  AELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 82  PDATSEKEL-GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 139
           P+   E  L G E F +  +  A+  Y+  I  +P  A  Y+NRA A  KL  F EA  D
Sbjct: 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 195
Query: 140 CTEALNLDDRYIKAYSRRATAR 161
           C +A+  D  +++AY R+ATA+
Sbjct: 196 CNKAIEKDPNFVRAYIRKATAQ 217

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 22/151 (14%)
Query: 73  SSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA------------------LS 114
           S +  EE    A   K  GN  FK++K +EA+  Y  +IA                  L+
Sbjct: 168 SDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALA 227
Query: 115 PTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 174
                + N A   +KL+R+ EA   C   L  +++  KA  RR  A+ ELG++  + +D 
Sbjct: 228 VKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDF 287
Query: 175 EFALRLEPQNQEIKKQLAEV----KSLYEKE 201
             A +  P ++ I+++L  +    K+LY+K+
Sbjct: 288 RKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 143
           A + K+ GN+ F+ KK+ +AI  Y+ ++ L    V Y+N +  Y+ +   ++  +  T+A
Sbjct: 6   ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKA 65
Query: 144 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVF 203
           L L   Y K   RRA+A + LGK      D+ F L +   N +     A ++ + E+ + 
Sbjct: 66  LELKPDYSKVLLRRASANEGLGKFA----DAMFDLSVLSLNGDFND--ASIEPMLERNLN 119
Query: 204 QKA-SKTLEKYG 214
           ++A SK  EK+G
Sbjct: 120 KQAMSKLKEKFG 131

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 19/111 (17%)
Query: 91  GNECFKQKKFKEAIDCYSRSIALSPTAVA-------------------YANRAMAYLKLR 131
           GNE F QK +KEAID Y  ++    T +                    YAN +  YL + 
Sbjct: 18  GNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG 77
Query: 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182
              EAE+  +E L  ++   KA  RRA AR    KL E+ ED +  LR  P
Sbjct: 78  DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 91  GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149
           G E F +  +  A+  Y+  I  +P  A  Y+NRA A  KL  F EA  DC +A+  D  
Sbjct: 11  GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70
Query: 150 YIKAYSRRATARKELGKLKESIE 172
           +++AY R+ATA+  + +   ++E
Sbjct: 71  FVRAYIRKATAQIAVKEYASALE 93

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 27/149 (18%)
Query: 77  NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANR------------- 123
           +EE    +T  KE G   FK+ K+K+A+  Y + ++      +++N              
Sbjct: 140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 199
Query: 124 ---AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 180
              AM +LKL+ F  A + C +AL LD    K  SRR  A   +   + +  D +  L+L
Sbjct: 200 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259
Query: 181 EPQN-----------QEIKKQLAEVKSLY 198
            P N           Q I++QLA  K LY
Sbjct: 260 YPNNKAAKTQLAVCQQRIRRQLAREKKLY 288

>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd Length = 111

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 87  EKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEAL 144
           +KE GN  FKQ  ++EA+ CY + I   P   V Y+N+AMA +KL  + +A   C + L
Sbjct: 7   QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 17/125 (13%)
Query: 88  KELGNECFKQKKFKEAIDCYSRSI----------------ALSPTAVAYA-NRAMAYLKL 130
           K +GN  FK + ++ AI  Y++ +                 L P A++   N     LK+
Sbjct: 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 286
Query: 131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ 190
             +Q A D C EAL +D    KA  RRA   + L +  +++ D + A  + P+++ I+ +
Sbjct: 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 346
Query: 191 LAEVK 195
           L +VK
Sbjct: 347 LLKVK 351

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 27/154 (17%)
Query: 72  SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANR-------- 123
           S  + +EE    +T  KE G   FK+ K+K+A+  Y + ++      +++N         
Sbjct: 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194
Query: 124 --------AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 175
                   AM +LKL+ F  A + C +AL LD    K   RR  A   +   + +  D +
Sbjct: 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQ 254
Query: 176 FALRLEPQN-----------QEIKKQLAEVKSLY 198
             L+L P N           Q I++QLA  K LY
Sbjct: 255 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLY 288

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN   + + F  A+  Y R+++LSP  AV + N A  Y +      A D    A+ L  
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
            +  AY   A A KE G + E+ +    ALRL P + +    LA +K
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 88  KELGNECFKQKKFKEAIDCYSRSIAL----------------SPTAVAYANRAMAYLKLR 131
           KE G   FK  K+ +A+  Y + ++                 S    A+ N AM YLKLR
Sbjct: 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331
Query: 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191
            + +A + C +AL LD    K   RR  A+  + + + +  D E  L + PQN+  + Q+
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI 391
Query: 192 A 192
           +
Sbjct: 392 S 392

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A   K  GN  F  K F EAI  Y  +I L P   V Y+N +  Y+     ++  +  T+
Sbjct: 25  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIED 173
           AL +   + KA  RRA+A + LG   +++ D
Sbjct: 85  ALEIKPDHSKALLRRASANESLGNFTDAMFD 115

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 88  KELGNECFKQKKFKEAIDCYSRSIAL----------------SPTAVAYANRAMAYLKLR 131
           KE G   FK  K+ +A+  Y + ++                 S    A+ N AM YLKLR
Sbjct: 272 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331
Query: 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191
            + +A + C +AL LD    K   RR  A+  + + + +  D E  L + PQN+  + Q+
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI 391

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A   K  GN  F  K F EAI  Y  +I L P   V Y+N +  Y+     ++  +  T+
Sbjct: 21  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 80
Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIED 173
           AL +   + KA  RRA+A + LG   +++ D
Sbjct: 81  ALEIKPDHSKALLRRASANESLGNFTDAMFD 111

>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 127

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 81  TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVA-YANRAMAYLKLRRFQEAEDD 139
           T  A +EK+LGN  +KQK F++A   Y ++I L P+ +  Y N+A  Y + ++F E    
Sbjct: 5   TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64
Query: 140 CTEALNL 146
           C +A+ +
Sbjct: 65  CEKAVEV 71

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL LD 
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD- 73
Query: 149 RYIKAYSRRATARKELGKLKE 169
                    A A++ LG  K+
Sbjct: 74  ------PNNAEAKQNLGNAKQ 88

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P +A A+ N   AY K   + EA +   +AL LD 
Sbjct: 9   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Query: 149 R 149
           R
Sbjct: 69  R 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	438
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-45
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-44
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-43
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-43
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	9e-43
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-42
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	3e-41
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	7e-41
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-40
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-37
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-34
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-34
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-33
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	2e-32
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-32
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	3e-32
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-30
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-29
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-25
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-28
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-24
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-27
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-26
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-19
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-27
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-24
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-14
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-26
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-23
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-22
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-23
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	7e-22
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-20
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-20
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-10
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-20
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-20
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-19
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-19
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-19
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-14
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-12
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-19
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-19
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-10
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-19
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-14
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-19
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-18
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-18
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-10
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-19
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-17
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-16
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	9e-16
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-18
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-15
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-15
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-18
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-18
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-18
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-18
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-17
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-17
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-16
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-15
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-17
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-17
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-16
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-13
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-10
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-17
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-17
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-16
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-16
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-13
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-16
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-16
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-16
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-12
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-16
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-16
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-15
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-15
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-15
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-14
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-15
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-11
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-15
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-14
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-13
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-13
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-11
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	9e-13
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	9e-09
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	9e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-12
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	9e-09
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-12
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	8e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	8e-11
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-12
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-11
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-11
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-11
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	2e-10
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	3e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-07
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	8e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	9e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	9e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	9e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	7e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	6e-04
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-04

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  155 bits (393), Expect = 1e-45
 Identities = 44/137 (32%), Positives = 78/137 (56%), Gaps = 1/137 (0%)

Query: 78  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136
           + +   A   K   N+ FK K ++ AI  YS++I L+P+ A+ Y NR++AYL+   +  A
Sbjct: 7   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 66

Query: 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
             D T A+ LD +YIK Y RRA +   LGK + ++ D E  ++++P +++ K +  E   
Sbjct: 67  LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126

Query: 197 LYEKEVFQKASKTLEKY 213
           + +++ F++A    E  
Sbjct: 127 IVKQKAFERAIAGDEHK 143

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  150 bits (381), Expect = 2e-44
 Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 1/125 (0%)

Query: 77  NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE 135
           +EE + +A   K  GNE  K + F+ A+  Y ++I L+P  AV + NRA AY KL  +  
Sbjct: 5   SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAG 64

Query: 136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
           A  DC  A+ +D  Y KAY R   A   L K  E++   + AL L+P N+  K  L   +
Sbjct: 65  AVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAE 124

Query: 196 SLYEK 200
               +
Sbjct: 125 LKLRE 129

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  147 bits (373), Expect = 3e-43
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 1/113 (0%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A  EK  GNE FK+  +  A+  Y+ ++   P  A+ Y+NRA    KL  FQ A DDC  
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
            + LD ++IK Y R+A     + +  ++    E AL+++P N+E ++ +    
Sbjct: 73  CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  146 bits (372), Expect = 3e-43
 Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 1/114 (0%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
               KE GN+        +A+ CYS +I L P   V Y+NR+ AY K   +Q+A +D  +
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
            ++L   + K YSR+A A + L + +E+    E  L+ E  N ++K+ L  +++
Sbjct: 64  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  146 bits (371), Expect = 9e-43
 Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 78  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRF 133
                     ++ GNE FK   +  A+  Y++++ L  T    AV + NRA  +LKL  +
Sbjct: 22  TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDY 81

Query: 134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193
            +AE + ++A+  D   +KA  RR+ A ++LG+L +++ D +  + LEP+N+  ++ L  
Sbjct: 82  DKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141

Query: 194 VKS 196
           +  
Sbjct: 142 ISG 144

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  145 bits (369), Expect = 1e-42
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 1/113 (0%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A   K  GNECF++  + +A+  Y+ +I  +P  A  Y+NRA  Y KL  FQ A  DC E
Sbjct: 16  ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
            + L+  +IK Y+R+A A + +    ++++  + AL L+   +E         
Sbjct: 76  CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  143 bits (362), Expect = 3e-41
 Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 3/127 (2%)

Query: 78  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136
              TP++   K  GN    +K++ +AID Y+++++++P   +  +NRA AY    + ++A
Sbjct: 5   MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKA 64

Query: 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN--QEIKKQLAEV 194
            +D   A  +D +Y KA+SR   AR ++   K + E  E  +  E       +K+ L   
Sbjct: 65  AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124

Query: 195 KSLYEKE 201
           K   E+ 
Sbjct: 125 KRKIEEA 131

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  140 bits (356), Expect = 7e-41
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A   +  G E F +  +  A+  Y+  I  +P  A  Y+NRA A  KL  F EA  DC +
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 202
           A+  D  +++AY R+ATA+  + +   ++E  + A   + +         E+  LY K  
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN-GSSAREIDQLYYKAS 122

Query: 203 FQK 205
            Q+
Sbjct: 123 QQR 125

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  140 bits (356), Expect = 1e-40
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 6/134 (4%)

Query: 78  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136
              +P A   KE GN  F  +K+ EA  CY R+I  +P  AV Y NRA+ YLK+++ ++A
Sbjct: 3   HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 62

Query: 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ-----EIKKQL 191
             DC  AL LD + +KA+      + E+    E+I + + A  L  + +     +I   L
Sbjct: 63  LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 122

Query: 192 AEVKSLYEKEVFQK 205
              K      + ++
Sbjct: 123 RIAKKKRWNSIEER 136

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  136 bits (345), Expect = 2e-37
 Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 6/191 (3%)

Query: 81  TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 139
           +P A   KE GN  F  +K+ EA  CY R+I  +P  AV Y NRA+ YLK+++ ++A  D
Sbjct: 1   SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60

Query: 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE-----IKKQLAEV 194
           C  AL LD + +KA+      + E+    E+I + + A  L  + +      I   L   
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120

Query: 195 KSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNL 254
           K      + ++      +      ++   E        Q+       D  I  +      
Sbjct: 121 KKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEA 180

Query: 255 RDESKTEGQRD 265
           + +       +
Sbjct: 181 KHDKYMADMDE 191

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score =  123 bits (312), Expect = 2e-34
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 8/127 (6%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141
            A  EKELGN+ +K+K F  A+  Y ++  L PT      N+A  Y +   + +  + C 
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62

Query: 142 EALNLD-------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194
           +A+ +         +  KAY+R   +  +  K K++I     +L        +KK     
Sbjct: 63  KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAE 122

Query: 195 KSLYEKE 201
           K L E+E
Sbjct: 123 KILKEQE 129

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score =  123 bits (311), Expect = 3e-34
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 8/121 (6%)

Query: 77  NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE 135
           +   T  A +EK+LGN  +KQK F++A   Y ++I L P+    Y N+A  Y + ++F E
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60

Query: 136 AEDDCTEALNLD-------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188
               C +A+ +            KA SR   A ++   L  +++    +L      + +K
Sbjct: 61  CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120

Query: 189 K 189
           K
Sbjct: 121 K 121

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  123 bits (310), Expect = 1e-33
 Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 19/158 (12%)

Query: 74  SLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------- 116
           S   ++      + ++ GNE F QK +KEAID Y  ++    T                 
Sbjct: 1   SNAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDR 60

Query: 117 --AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 174
                YAN +  YL +    EAE+  +E L  ++   KA  RRA AR    KL E+ ED 
Sbjct: 61  KNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDL 120

Query: 175 EFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
           +  LR  P    +  +  ++ +    E    +  T  K
Sbjct: 121 KLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSK 158

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  127 bits (321), Expect = 2e-32
 Identities = 44/129 (34%), Positives = 76/129 (58%), Gaps = 1/129 (0%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A   K   N+ FK K ++ AI  YS++I L+P+ A+ Y NR++AYL+   +  A  D T 
Sbjct: 6   AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 202
           A+ LD +YIK Y RRA +   LGK + ++ D E  ++++P +++ K +  E   + +++ 
Sbjct: 66  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 125

Query: 203 FQKASKTLE 211
           F++A    E
Sbjct: 126 FERAIAGDE 134

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score =  117 bits (296), Expect = 3e-32
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 3/110 (2%)

Query: 82  PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 140
                +KE GN  FKQ  ++EA+ CY + I   P   V Y+N+AMA +KL  + +A   C
Sbjct: 2   SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61

Query: 141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR-LEPQNQEIKK 189
            + L           R     + L   + ++   +  +  ++   +   +
Sbjct: 62  QQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDR 110

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  120 bits (302), Expect = 3e-32
 Identities = 36/152 (23%), Positives = 56/152 (36%), Gaps = 23/152 (15%)

Query: 77  NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----------------AVA 119
           +EE    A   KE GNE FK+ +  EAI  Y  ++                         
Sbjct: 31  DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90

Query: 120 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 179
             N A  Y K + + +A D  ++ L +D   +KA  +   A    G L+E+ E+   A  
Sbjct: 91  NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150

Query: 180 LEPQNQEIKKQLAEVKSLY------EKEVFQK 205
           L P N +I+       +        +K  F  
Sbjct: 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGG 182

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  119 bits (301), Expect = 1e-30
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 22/170 (12%)

Query: 72  SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------------- 116
           S  + +EE    +T  KE G   FK+ K+K+A+  Y + ++                   
Sbjct: 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194

Query: 117 -AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 175
              ++ N AM +LKL+ F  A + C +AL LD    K  SRR  A   +   + +  D +
Sbjct: 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 254

Query: 176 FALRLEPQNQEIKKQLAEVKSLY------EKEVFQKASKTLEKYGKSGMK 219
             L+L P N+  K QLA  +         EK+++    + L +       
Sbjct: 255 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKA 304

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  113 bits (286), Expect = 3e-29
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141
            A   +  G E F +  +  A+  Y+  I  +P  A  Y+NRA A  KL  F EA  DC 
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197

Query: 142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 201
           +A+  D  +++AY R+ATA+  + +   ++E  + A   + +           +  Y+  
Sbjct: 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  102 bits (256), Expect = 5e-25
 Identities = 21/103 (20%), Positives = 42/103 (40%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 143
           A  EK  GN+ +K ++F EAI+ Y+++  L        NRA A  +   ++ A     +A
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDA 64

Query: 144 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
           +         Y   + +   +G     + D +  +    ++  
Sbjct: 65  VEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT 107

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 83.0 bits (206), Expect = 3e-18
 Identities = 15/126 (11%), Positives = 45/126 (35%), Gaps = 4/126 (3%)

Query: 82  PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 140
            D T         +++ +++ AI   + ++         Y   + ++ ++        D 
Sbjct: 36  KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL 95

Query: 141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200
            + +    + +  + R A    +L   ++ ++ +E    + P+  E  +     K  + K
Sbjct: 96  KKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEG--KEYFTK 152

Query: 201 EVFQKA 206
             +  A
Sbjct: 153 SDWPNA 158

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 76.1 bits (188), Expect = 8e-16
 Identities = 6/95 (6%), Positives = 25/95 (26%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149
           +     +       +    ++I     ++     A    KLR  ++          ++  
Sbjct: 78  ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPE 137

Query: 150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184
             +                 +++     ++  P++
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 70.3 bits (173), Expect = 7e-14
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 1/80 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                 K   F EAI   +++I   P    AY  +A A + ++ +  A +    A   D 
Sbjct: 179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238

Query: 149 RYIKAYSRRATARKELGKLK 168
                 S R   +      +
Sbjct: 239 EVNNGSSAREIDQLYYKASQ 258

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  116 bits (292), Expect = 2e-28
 Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 143
           A + K+ GN+ F+ KK+ +AI  Y+ ++ L    V Y+N +  Y+ +   ++  +  T+A
Sbjct: 6   ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKA 65

Query: 144 LNLDDRYIKAYSRRATARKELGKLKESIED-SEFALRLEPQNQEIKKQLAEVKSLYEKEV 202
           L L   Y K   RRA+A + LGK  +++ D S  +L  +  +  I+  L    +      
Sbjct: 66  LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSK 125

Query: 203 FQKASKTLEK 212
            ++    ++ 
Sbjct: 126 LKEKFGDIDT 135

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  104 bits (261), Expect = 2e-24
 Identities = 35/218 (16%), Positives = 77/218 (35%), Gaps = 11/218 (5%)

Query: 2   AKHNRDQALDFQGFLN---DLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSG 58
            + ++ + L     +     +   +L+    D+  +      + L +   +S +    + 
Sbjct: 150 ERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKAD 209

Query: 59  NSYSR---NYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALS 114
            S+++    ++    +  +  +E+     A S +  G   F +     A +   ++I L 
Sbjct: 210 ESFTKAARLFEEQ--LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF 267

Query: 115 PTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 174
           P   +Y   A+         E  +   +AL LD      Y  R      L    ++ +D 
Sbjct: 268 PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327

Query: 175 EFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
           + A  L+P+N     QLA +   Y +  F        +
Sbjct: 328 DKAKELDPENIFPYIQLACL--AYRENKFDDCETLFSE 363

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 90.2 bits (224), Expect = 1e-19
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 3/132 (2%)

Query: 82  PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 140
           P   S   +      +    E  + + +++ L    +  Y +R      L+ + +A  D 
Sbjct: 268 PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327

Query: 141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200
            +A  LD   I  Y + A       K  +       A R  P+  E+    AE+  L +K
Sbjct: 328 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEI--LTDK 385

Query: 201 EVFQKASKTLEK 212
             F KA K  + 
Sbjct: 386 NDFDKALKQYDL 397

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 89.8 bits (223), Expect = 2e-19
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 14/127 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK---------LRRFQEAEDD 139
                  +  F +A+  Y  +I L       Y   A    K         +  F EA + 
Sbjct: 378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437

Query: 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 199
             +A  LD R  +A    A  + +   + E+I   E +  L    +E  + +       E
Sbjct: 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT----FAE 493

Query: 200 KEVFQKA 206
               Q+ 
Sbjct: 494 AAKVQQR 500

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 88.3 bits (219), Expect = 5e-19
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 4/127 (3%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G   F  + + +A   + ++  L P     Y   A    +  +F + E   +EA     
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
              +  +  A    +     ++++  + A+ LE +   I   +A    L  K      + 
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIA---PLVGKATLLTRNP 426

Query: 209 TLEKYGK 215
           T+E + +
Sbjct: 427 TVENFIE 433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 3/91 (3%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
              +  L       + F EA +   ++  L P    A    A   L+     EA     E
Sbjct: 415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIED 173
           + +L     +     A    E  K+++ I  
Sbjct: 475 SADLARTMEEKLQ--AITFAEAAKVQQRIRS 503

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  111 bits (280), Expect = 1e-27
 Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 1/134 (0%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141
           D     ELG +     +  +A+  +  ++   P   +AY  RA  +L + + + A  D T
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 201
           + + L   +  A  +R     + GKL E+ +D +  L+  P  QE K+  +++    E +
Sbjct: 62  KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121

Query: 202 VFQKASKTLEKYGK 215
             +  +        
Sbjct: 122 RLRSQALDAFDGAD 135

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  107 bits (269), Expect = 4e-26
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 5/120 (4%)

Query: 86  SEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDC 140
              E   E  +  ++ +A   Y   +   P+       +       + K  +  EA   C
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295

Query: 141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200
           +E L ++   + A   RA A        E+I+D E A      +Q+I++ L + + L ++
Sbjct: 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 1/126 (0%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
               + F    +  AI    + + +    A     RA  ++K    ++A  D   A  L 
Sbjct: 125 SQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK 184

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
               +A+ + +T   +LG  + S+ +    L+L+  ++       +VK L +     +  
Sbjct: 185 SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 244

Query: 208 KTLEKY 213
               +Y
Sbjct: 245 IRDGRY 250

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 18/139 (12%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP----------------TAVAYANRAMAYLKLRRF 133
            G+   KQ K  EA D + + +  +P                      ++A+       +
Sbjct: 77  RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136

Query: 134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193
             A     + L +     +    RA    + G+ +++I D + A +L+  N E   +++ 
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIST 196

Query: 194 VKSLYEKEVFQKASKTLEK 212
           +   Y+    + +   + +
Sbjct: 197 L--YYQLGDHELSLSEVRE 213

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 13/115 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                 K+ + ++AI     +  L      A+   +  Y +L   + +  +  E L LD 
Sbjct: 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219

Query: 149 RYIKAYSRRATARK------------ELGKLKESIEDSEFALRLEPQNQEIKKQL 191
            + + ++     +K              G+  ++    E  ++ EP   E   + 
Sbjct: 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  112 bits (283), Expect = 2e-27
 Identities = 29/139 (20%), Positives = 58/139 (41%), Gaps = 1/139 (0%)

Query: 78  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136
            +S  D     ELG +     +  +A+  +  ++   P   +AY  RA  +L + + + A
Sbjct: 20  FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA 79

Query: 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
             D T+ + L   +  A  +R     + GKL E+ +D +  L+  P   E K+  +++  
Sbjct: 80  LPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139

Query: 197 LYEKEVFQKASKTLEKYGK 215
             E +  +  +      G 
Sbjct: 140 SDEMQRLRSQALNAFGSGD 158

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  103 bits (258), Expect = 4e-24
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTE 142
            E   E  +  ++ +A   Y   +   P+       +       + K  +  EA   C+E
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 202
            L ++   + A   RA A        E+I+D E A      +Q+I++ L + + L ++  
Sbjct: 321 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ 380

Query: 203 FQKASKTLE 211
            +   K L 
Sbjct: 381 KRDYYKILG 389

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 87.4 bits (217), Expect = 7e-19
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 1/126 (0%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
                 F    +  AI    + + +    A     RA  ++K    ++A  D   A  L 
Sbjct: 148 SQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK 207

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
           +   +A+ + +T   +LG  + S+ +    L+L+  ++       +VK L +     +  
Sbjct: 208 NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 267

Query: 208 KTLEKY 213
               +Y
Sbjct: 268 IRDGRY 273

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 18/139 (12%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP----------------TAVAYANRAMAYLKLRRF 133
            G+   KQ K  EA D + + +  +P                      ++A+       +
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159

Query: 134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193
             A     + L +     +    RA    + G+ +++I D + A +L+  N E   +++ 
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIST 219

Query: 194 VKSLYEKEVFQKASKTLEK 212
           +   Y+    + +   + +
Sbjct: 220 L--YYQLGDHELSLSEVRE 236

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 76.3 bits (188), Expect = 3e-15
 Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 12/127 (9%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149
            G +   +  + +++               +       L   +  +A      A++ D  
Sbjct: 9   SGVDLGTENLYFQSMADVE----------KHLELGKKLLAAGQLADALSQFHAAVDGDPD 58

Query: 150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKT 209
              AY RRAT    +GK K ++ D    ++L+      + Q      L ++    +A   
Sbjct: 59  NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG--HLLLKQGKLDEAEDD 116

Query: 210 LEKYGKS 216
            +K  KS
Sbjct: 117 FKKVLKS 123

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 75.5 bits (186), Expect = 6e-15
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 1/101 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           + +   K +K  EAI   S  + + P    A  +RA AYL    + EA  D   A   ++
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK 189
              +       A++ L + ++        ++   + QEI K
Sbjct: 361 NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIK 401

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 19/140 (13%), Positives = 47/140 (33%), Gaps = 19/140 (13%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR------------AMAYLKLRRFQEA 136
           +    ++    + ++      + L       +A+             A   ++  R+ +A
Sbjct: 217 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 276

Query: 137 EDDCTEALNLD----DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 192
                  +  +    +  +++  R      +  K  E+I      L++EP N    K  A
Sbjct: 277 TSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336

Query: 193 EVKSLYEKEVFQKASKTLEK 212
           E      +E++ +A +  E 
Sbjct: 337 EA--YLIEEMYDEAIQDYET 354

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  108 bits (272), Expect = 1e-26
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 24/164 (14%)

Query: 77  NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSI------------------ALSPTAV 118
            EE    A   K  GN  FK++K +EA+  Y  +I                  AL+    
Sbjct: 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNP 231

Query: 119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 178
            + N A   +KL+R+ EA   C   L  +++  KA  RR  A+ ELG++  + +D   A 
Sbjct: 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291

Query: 179 RLEPQNQEIKKQLAEVKSLY------EKEVFQKASKTLEKYGKS 216
           +  P ++ I+++L  +          +KE+++   K  ++ G  
Sbjct: 292 KYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAK 335

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  101 bits (254), Expect = 2e-23
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 3/150 (2%)

Query: 76  MNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF 133
           ++       A   K  GN  F  K F EAI  Y  +I L P   V Y+N +  Y+     
Sbjct: 16  LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDL 75

Query: 134 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED-SEFALRLEPQNQEIKKQLA 192
           ++  +  T+AL +   + KA  RRA+A + LG   +++ D S  +L  +     I+  L 
Sbjct: 76  EKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLE 135

Query: 193 EVKSLYEKEVFQKASKTLEKYGKSGMKVNG 222
              +    +V  +     E  G   +  N 
Sbjct: 136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNT 165

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 99.4 bits (248), Expect = 1e-22
 Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 2/130 (1%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTE 142
            A +    G   F +    +A      SI L PT  +Y   A+        QE      +
Sbjct: 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQK 301

Query: 143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 202
           A++L+  Y   Y  R      L   K + ED + A  L P+N     QLA +  LY++  
Sbjct: 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACL--LYKQGK 359

Query: 203 FQKASKTLEK 212
           F ++     +
Sbjct: 360 FTESEAFFNE 369

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 92.1 bits (229), Expect = 3e-20
 Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 82  PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 140
           P   S   L      ++  +E    + +++ L+P     Y +R   Y  L+ ++ A++D 
Sbjct: 274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333

Query: 141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200
            +A +L+   +  Y + A    + GK  ES           P   E+    AE+  L ++
Sbjct: 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEI--LTDR 391

Query: 201 EVFQKASKTLEK 212
             F  A K  + 
Sbjct: 392 GDFDTAIKQYDI 403

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 15/138 (10%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G   F  + +K A + + ++ +L+P     Y   A    K  +F E+E    E      
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI--------------KKQLAEV 194
              +  +  A    + G    +I+  + A RLE   ++I               +Q ++ 
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435

Query: 195 KSLYEKEVFQKASKTLEK 212
            +  ++E F  A K L K
Sbjct: 436 PTQLDEEKFNAAIKLLTK 453

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 25/141 (17%), Positives = 39/141 (27%), Gaps = 21/141 (14%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK------------ 129
                         +  F  AI  Y  +  L       +        K            
Sbjct: 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDP 436

Query: 130 ----LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 185
                 +F  A    T+A  LD R  +A    A  + ++ K+ E+IE  E +  L     
Sbjct: 437 TQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496

Query: 186 EIKKQLAEVKSLYEKEVFQKA 206
           E  +      +  E    QK 
Sbjct: 497 EKLQAT----TFAEAAKIQKR 513

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 7/161 (4%)

Query: 99  KFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKA 153
                    ++   LSP+     AV   NR   +   + F EA      A+ LD      
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 154 YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKY 213
           YS  +      G L++ IE +  AL ++P + +   + A          F  A   L   
Sbjct: 62  YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA--NESLGNFTDAMFDLSVL 119

Query: 214 GKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNL 254
             +G          +   + K  +  + +     +     +
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQV 160

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 6/120 (5%)

Query: 96  KQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK 152
               +  A    S ++    +           +       +       T    L +    
Sbjct: 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL 244

Query: 153 AYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
           A             L ++    + ++ L P        LA    L +KE  Q+  K  +K
Sbjct: 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIF-LALT--LADKENSQEFFKFFQK 301

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 15/111 (13%), Positives = 28/111 (25%), Gaps = 26/111 (23%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141
               +         ++KF  AI   +++  L P    A    A   L++ +  EA +   
Sbjct: 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486

Query: 142 EALNL-------------------------DDRYIKAYSRRATARKELGKL 167
           ++  L                         D              +  G L
Sbjct: 487 DSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAKMELTLARYRAKGML 537

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  100 bits (251), Expect = 2e-23
 Identities = 45/214 (21%), Positives = 81/214 (37%), Gaps = 35/214 (16%)

Query: 72  SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSI----------------ALSP 115
           S  +  +E    A   KE G   FK  K+ +A+  Y + +                + S 
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 116 TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 175
              A+ N AM YLKLR + +A + C +AL LD    K   RR  A+  + + + +  D E
Sbjct: 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 176 FALRLEPQNQEIKKQLAEVKSLY------EKEVFQKASKTLEKYGKSGMKVNGHEVRAVR 229
             L + PQN+  + Q++  +         ++ ++    K   +                +
Sbjct: 376 KVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDA-------------K 422

Query: 230 NTIQKTGVAEIQDLTISKKTENKNLRDESKTEGQ 263
               K    +  +   ++K  +    +E K EG 
Sbjct: 423 EEANKAMGKKTSEGVTNEKGTDSQAMEEEKPEGH 456

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 95.6 bits (238), Expect = 7e-22
 Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 23/145 (15%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSI----------------ALSPTAVA-YANRAMA 126
           +   K +GN  FK + ++ AI  Y++ +                 L P A++   N    
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282

Query: 127 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
            LK+  +Q A D C EAL +D    KA  RRA   + L +  +++ D + A  + P+++ 
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342

Query: 187 IKKQLAEVKSLY------EKEVFQK 205
           I+ +L +VK         EK  + K
Sbjct: 343 IQAELLKVKQKIKAQKDKEKAAYAK 367

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 91.1 bits (227), Expect = 2e-20
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L N   ++    EA DCY+ ++ L PT A +  N A    +    +EA     +AL +  
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194
            +  A+S  A+  ++ GKL+E++   + A+R+ P   +    +   
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 89.5 bits (223), Expect = 8e-20
 Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L    ++Q     AID Y R+I L P    AY N A A  +     EAED    AL L  
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
            +  + +  A  ++E G ++E++     AL + P+       LA V  L ++   Q+A  
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV--LQQQGKLQEALM 360

Query: 209 TLEK 212
             ++
Sbjct: 361 HYKE 364

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 89.5 bits (223), Expect = 1e-19
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN   + + F  A+  Y R+++LSP  AV + N A  Y +      A D    A+ L  
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
            +  AY   A A KE G + E+ +    ALRL P + +    LA +    E+   ++A +
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI--KREQGNIEEAVR 326

Query: 209 TLEK 212
              K
Sbjct: 327 LYRK 330

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 89.5 bits (223), Expect = 1e-19
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L +  F+ ++   +    + +I  +P  A AY+N    Y +  + QEA +    AL L  
Sbjct: 39  LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
            +I  Y   A A    G ++ +++    AL+  P    ++  L  +  L      ++A  
Sbjct: 99  DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL--LKALGRLEEAKA 156

Query: 209 TLEK 212
              K
Sbjct: 157 CYLK 160

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 89.1 bits (222), Expect = 1e-19
 Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN      + +EA  CY ++I   P  AVA++N    +        A     +A+ LD 
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
            ++ AY       KE      ++     AL L P +  +   LA V   YE+ +   A  
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV--YYEQGLIDLAID 258

Query: 209 TLEK 212
           T  +
Sbjct: 259 TYRR 262

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 87.2 bits (217), Expect = 5e-19
 Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L          + A+  Y  ++  +P      ++       L R +EA+    +A+    
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
            +  A+S         G++  +I   E A+ L+P   +    L  V  L E  +F +A  
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV--LKEARIFDRAVA 224

Query: 209 TLEK 212
              +
Sbjct: 225 AYLR 228

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 86.8 bits (216), Expect = 8e-19
 Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 3/118 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG     Q +   AI  + +++ L P    AY N      + R F  A      AL+L  
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKA 206
            +   +   A    E G +  +I+    A+ L+P   +    LA    L EK    +A
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA--LKEKGSVAEA 290

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 86.4 bits (215), Expect = 9e-19
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN   ++ + +EAI+ Y  ++ L P     Y N A A +     + A      AL  + 
Sbjct: 73  LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
                 S      K LG+L+E+      A+  +P        L  V     +     A  
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV--FNAQGEIWLAIH 190

Query: 209 TLEK 212
             EK
Sbjct: 191 HFEK 194

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 81.0 bits (201), Expect = 6e-17
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 3/125 (2%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           EL +  ++   F+ A     +     P         +  + + RR   +    T A+  +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
               +AYS      KE G+L+E+IE    ALRL+P   +    LA    L      + A 
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA--LVAAGDMEGAV 121

Query: 208 KTLEK 212
           +    
Sbjct: 122 QAYVS 126

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 69.9 bits (172), Expect = 3e-13
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L N   +Q   +EA+  Y +++ + P  A A++N A    +  + QEA     EA+ +  
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 149 RYIKAYSRRATARKELG 165
            +  AYS      KE+ 
Sbjct: 371 TFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.5 bits (145), Expect = 6e-10
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 2/93 (2%)

Query: 120 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 179
               A    +   F+ AE  C +    +          ++   +  +L  S   S  A++
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 180 LEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
             P   E    L  V    E+   Q+A +    
Sbjct: 62  QNPLLAEAYSNLGNV--YKERGQLQEAIEHYRH 92

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 84.0 bits (209), Expect = 4e-20
 Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL-- 146
            G   +    + E+ID + ++I L P  +  +  +  A   L R++EA D     +N+  
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71

Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184
           D+     ++ +A A + +   +   E +E   +LE  +
Sbjct: 72  DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 58.6 bits (143), Expect = 5e-11
 Identities = 10/66 (15%), Positives = 25/66 (37%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 176
              Y    +       + E+ D   +A+ LD    K +  +  A   L + +E+++   +
Sbjct: 6   PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNY 65

Query: 177 ALRLEP 182
            + +  
Sbjct: 66  VINVIE 71

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 87.2 bits (217), Expect = 9e-20
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            GN    ++ +KEA D + +++         +       +KL + + A      A+ L++
Sbjct: 97  AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
              +A  +        G L E++         +P + +             KE  +KA +
Sbjct: 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVT--YAYKENREKALE 214

Query: 209 TLEK 212
            L+K
Sbjct: 215 MLDK 218

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 86.0 bits (214), Expect = 2e-19
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
             N      + + A+  Y +++ L  + A AY      Y+    ++EA+D   +AL    
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
                +    T   +L + K ++   + A+ L   + E + Q      L  + +  +A  
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMC--LANEGMLDEALS 180

Query: 209 TLEK 212
               
Sbjct: 181 QFAA 184

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 85.6 bits (213), Expect = 3e-19
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 1/98 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG    K ++ K A+    R++ L+     A     M         EA          D 
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
            +  A+             ++++E  + A+ ++P +  
Sbjct: 191 GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 84.9 bits (211), Expect = 5e-19
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                 +   +++A + ++++I  +   A+ Y N A     +   + A     +AL LD 
Sbjct: 29  QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
               AY             KE+ +  E ALR   +N +
Sbjct: 89  SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD 126

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 70.6 bits (174), Expect = 5e-14
 Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G     +    EA+  ++      P  A A+ N  + Y      ++A +   +A+++  
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224

Query: 149 RYIKAYSRRATARKELGK 166
            ++ A   +         
Sbjct: 225 DHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 65.6 bits (161), Expect = 2e-12
 Identities = 16/116 (13%), Positives = 40/116 (34%), Gaps = 4/116 (3%)

Query: 97  QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR 156
                 +     R   ++   +    +     +   +++A +  T+A+  +      Y  
Sbjct: 5   HHHHHHSSGLVPRGSHMAS--MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62

Query: 157 RATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
            A     + +L+ ++   + AL L+            V     KE++++A    EK
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV--YVVKEMYKEAKDMFEK 116

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 82.8 bits (206), Expect = 2e-19
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P +A A+ N   AY K   + EA +   +AL LD 
Sbjct: 41  LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184
           R  +A+     A  + G   E+IE  + AL L+P++
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 82.1 bits (204), Expect = 5e-19
 Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 1/98 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL LD 
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
           R  +A+     A  + G   E+IE  + AL L+P++ E
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 24/70 (34%), Positives = 36/70 (51%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 176
           A A+ N   AY K   + EA +   +AL LD R  +A+     A  + G   E+IE  + 
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 177 ALRLEPQNQE 186
           AL L+P++ E
Sbjct: 61  ALELDPRSAE 70

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 82.4 bits (205), Expect = 3e-19
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL LD 
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
              +A+     A  + G   E+IE  + AL L+P N E
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 67.8 bits (167), Expect = 4e-14
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL LD 
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108

Query: 149 RYIKAYSRRATARKELG 165
              +A      A+++ G
Sbjct: 109 NNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 58.2 bits (142), Expect = 1e-10
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 112 ALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE 169
           A+ P   A A+ N   AY K   + EA +   +AL LD    +A+     A  + G   E
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61

Query: 170 SIEDSEFALRLEPQNQE 186
           +IE  + AL L+P N E
Sbjct: 62  AIEYYQKALELDPNNAE 78

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 82.9 bits (206), Expect = 7e-19
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG    K        +   RS+A +P          + Y++++++  A     +    + 
Sbjct: 48  LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
                  R   A   LG+  E+I+  + AL L P   ++ + +A      +    ++A  
Sbjct: 108 INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS--YEQMGRHEEALP 165

Query: 209 TLEK 212
             +K
Sbjct: 166 HFKK 169

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 82.1 bits (204), Expect = 2e-18
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG    + +K+  A+    +    +P          +A   L RF EA D    AL L  
Sbjct: 82  LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
              K +   A + +++G+ +E++   + A  L+     
Sbjct: 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 81.7 bits (203), Expect = 2e-18
 Identities = 11/98 (11%), Positives = 27/98 (27%), Gaps = 1/98 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G    K  ++ +A+    +             +  +AY+K        +    +L    
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
             +K  +       ++ K   ++          P N  
Sbjct: 74  DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFN 111

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 59.4 bits (145), Expect = 1e-10
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG       +F EAID +  ++ L P     +   A +Y ++ R +EA     +A  LD+
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175

Query: 149 RYIKAYS 155
                 +
Sbjct: 176 GASVELA 182

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 57.5 bits (140), Expect = 5e-10
 Identities = 13/70 (18%), Positives = 27/70 (38%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 176
            V Y ++ +++ K  R+ +A     +  + D   +        A  + G +    E  E 
Sbjct: 8   QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER 67

Query: 177 ALRLEPQNQE 186
           +L   P N +
Sbjct: 68  SLADAPDNVK 77

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 83.7 bits (208), Expect = 8e-19
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149
            G       +  +A     +++AL  T    +  A  YL + R  EA     +AL    +
Sbjct: 124 RGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK 183

Query: 150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183
            +    R A+A    GK +E+      AL     
Sbjct: 184 DLDLRVRYASALLLKGKAEEAAR--AAALEHHHH 215

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 79.5 bits (197), Expect = 3e-17
 Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 87  EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN 145
            ++  +    +   ++A+     +  ++P  A  +  R + Y  L    +AE    +AL 
Sbjct: 87  YRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA 146

Query: 146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 205
           L+D   +  S  A     +G+L E++     AL   P++ +++ + A    L  K   ++
Sbjct: 147 LED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA--LLLKGKAEE 203

Query: 206 ASKTLEK 212
           A++    
Sbjct: 204 AARAAAL 210

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 75.3 bits (186), Expect = 7e-16
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 12/105 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-----------RFQEAE 137
           L     K      A++     +A +P     Y   + AY+ L              ++A 
Sbjct: 45  LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104

Query: 138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182
               +A  ++ RY   + +R      LG+  ++    + AL LE 
Sbjct: 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED 149

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 74.9 bits (185), Expect = 9e-16
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 12/109 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG + +   ++  A+  + R++  +P    A    A   LKL     A ++    +    
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70

Query: 149 RYIKAYSRRATA-----------RKELGKLKESIEDSEFALRLEPQNQE 186
           RY+  Y   + A            +  G L++++   + A R+ P+   
Sbjct: 71  RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP 119

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 55.2 bits (134), Expect = 6e-09
 Identities = 11/74 (14%), Positives = 26/74 (35%)

Query: 113 LSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE 172
           +           +    L R+  A      AL  + +  +A    A  + +LG +  ++E
Sbjct: 1   MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALE 60

Query: 173 DSEFALRLEPQNQE 186
           + +  +   P+   
Sbjct: 61  NGKTLVARTPRYLG 74

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 84.3 bits (209), Expect = 1e-18
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 1/99 (1%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           E G           A + +S+++A+ P     +    +   +   F  A +     L LD
Sbjct: 48  ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 107

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
             Y  A+  R  A    G+ K + +D     + +P +  
Sbjct: 108 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF 146

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 20/138 (14%), Positives = 39/138 (28%), Gaps = 7/138 (5%)

Query: 80  STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQ 134
           S       + L        + +  +    + +A         A     R + Y  L    
Sbjct: 1   SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA 60

Query: 135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194
            A +D ++AL +     + ++       + G    + E  +  L L+P            
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 120

Query: 195 KSLYEKEVFQKASKTLEK 212
             LY     + A   L  
Sbjct: 121 --LYYGGRDKLAQDDLLA 136

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 73.5 bits (181), Expect = 8e-15
 Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 3/125 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG    +   F  A + +   + L PT   A+ NR +A     R + A+DD       D 
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK-SLYEKEVFQKAS 207
                      A ++L + K++ E  +       + Q     +     ++ E+ + ++  
Sbjct: 143 NDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLK 201

Query: 208 KTLEK 212
                
Sbjct: 202 ADATD 206

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN   +Q   +      + + +L+   +         YL L     A      A+  + 
Sbjct: 188 LGN-ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246

Query: 149 RYIKAYSRRATARKELGKLKESIEDSE 175
                +         LG+ ++ + +S+
Sbjct: 247 HNFVEHRYALLELSLLGQDQDDLAESD 273

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 12/101 (11%), Positives = 28/101 (27%), Gaps = 5/101 (4%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEAEDDCTEALN 145
           L     ++   K+A +   +    S      +         +      +  + D T+  +
Sbjct: 151 LYL-AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS 209

Query: 146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
           L +   +           LG L  +    + A+     N  
Sbjct: 210 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 1/54 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           LG           A   +  ++A +    V +    +    L + Q+   +  +
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 3/125 (2%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
             G      +  +  +    ++  L+P   VA A+       L   Q       +A  L 
Sbjct: 213 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 272

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
            + + A +  +  ++ L  ++  +     A  L PQ                 E  Q+  
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG--KQALETVQRLL 330

Query: 208 KTLEK 212
             L +
Sbjct: 331 PVLCQ 335

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 85.2 bits (211), Expect = 4e-18
 Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                   +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
             + A +     ++ L  ++  +     A  L PQ                 E       
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG--RPALESIVAQLS 467

Query: 209 TLEK 212
             + 
Sbjct: 468 RPDP 471

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 84.4 bits (209), Expect = 9e-18
 Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G      +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 316 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 375

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
             + A +     ++ L  ++  +     A  L P+                 E  Q+   
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG--KQALETVQRLLP 433

Query: 209 TLEK 212
            L +
Sbjct: 434 VLCQ 437

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G      +  +  +    ++  L+P   VA A+ +     L   Q       +A  L  
Sbjct: 248 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP 307

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
           + + A +     ++ L  ++  +     A  L PQ                 E  Q+   
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG--KQALETVQRLLP 365

Query: 209 TLEK 212
            L +
Sbjct: 366 VLCQ 369

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 83.3 bits (206), Expect = 2e-17
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G      +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 180 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 239

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
           + + A +     ++ L  ++  +     A  L PQ        +        E  Q+   
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGG--KQALETVQRLLP 297

Query: 209 TLEK 212
            L +
Sbjct: 298 VLCQ 301

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 82.5 bits (204), Expect = 4e-17
 Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                   +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
           + + A +     ++ L  ++  +     A  L P+                 E  Q+   
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGG--KQALETVQRLLP 399

Query: 209 TLEK 212
            L +
Sbjct: 400 VLCQ 403

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 82.1 bits (203), Expect = 5e-17
 Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 1/93 (1%)

Query: 96  KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY 154
             +  +  +    ++  L+P   VA A+       L   Q       +A  L  + + A 
Sbjct: 390 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAI 449

Query: 155 SRRATARKELGKLKESIEDSEFALRLEPQNQEI 187
           +     R  L  +   +   + AL     +  +
Sbjct: 450 ASNGGGRPALESIVAQLSRPDPALAALTNDHLV 482

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 79.4 bits (196), Expect = 3e-16
 Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 1/99 (1%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
                    +  +  +    ++  L+P   VA A+       L   Q       +A  L 
Sbjct: 145 SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
            + + A +     ++ L  ++  +     A  L PQ   
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 243

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 79.0 bits (195), Expect = 4e-16
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 1/99 (1%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
                    +  +  +    ++  L+P   VA A+       L   Q       +A  L 
Sbjct: 77  SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 136

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
              + A +     ++ L  ++  +     A  L P+   
Sbjct: 137 PEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVV 175

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 78.6 bits (194), Expect = 6e-16
 Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                   +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 112 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTP 171

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
             + A +     ++ L  ++  +     A  L PQ                 E  Q+   
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG--KQALETVQRLLP 229

Query: 209 TLEK 212
            L +
Sbjct: 230 VLCQ 233

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 66.7 bits (163), Expect = 4e-12
 Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 8/120 (6%)

Query: 99  KFKEAIDCY-----SRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK 152
              EA+  +        + L+P   VA A+       L   Q       +A  L  + + 
Sbjct: 48  TAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVV 107

Query: 153 AYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
           A +     ++ L  ++  +     A  L P+                 E  Q     L +
Sbjct: 108 AIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG--KQALETVQALLPVLCQ 165

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 16/127 (12%), Positives = 30/127 (23%), Gaps = 3/127 (2%)

Query: 87  EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN 145
             +       +     A +     + L     +  A R                    LN
Sbjct: 7   HHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLN 66

Query: 146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 205
           L    + A +     ++ L  ++  +     A  L PQ                 E  Q+
Sbjct: 67  LTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG--KQALETVQR 124

Query: 206 ASKTLEK 212
               L +
Sbjct: 125 LLPVLCQ 131

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 81.9 bits (203), Expect = 9e-18
 Identities = 18/125 (14%), Positives = 31/125 (24%), Gaps = 2/125 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G    K+ +   AI  Y  ++    T    Y      +     F  A     + +    
Sbjct: 80  YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS-LYEKEVFQKAS 207
              K +     A     +  ++       L L+P         A   +          A 
Sbjct: 140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAK 199

Query: 208 KTLEK 212
              EK
Sbjct: 200 PYYEK 204

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 81.9 bits (203), Expect = 1e-17
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDC---TEALN 145
             +  FK   + EAI+ +++  A    +   Y  RA+ Y +L ++  A+ D       +N
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68

Query: 146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 205
                   +        + G+   +I+  + A+  +    ++  Q+      Y K  F  
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY--FYNKGNFPL 126

Query: 206 ASKTLEKY 213
           A + +EK 
Sbjct: 127 AIQYMEKQ 134

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 80.0 bits (198), Expect = 4e-17
 Identities = 17/127 (13%), Positives = 43/127 (33%), Gaps = 6/127 (4%)

Query: 90  LGNECFKQKKFKEAI---DCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN 145
                ++  K+  A    + Y   +  +   +  +       +K  +   A      A++
Sbjct: 43  RAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102

Query: 146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 205
            D   +  Y +  +     G    +I+  E  +R    + ++  +L +    Y  + + K
Sbjct: 103 RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQA--YYYNKEYVK 160

Query: 206 ASKTLEK 212
           A  +  K
Sbjct: 161 ADSSFVK 167

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 78.9 bits (195), Expect = 1e-16
 Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 10/135 (7%)

Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNL 146
            ++G+  + +  F  AI    + I  +      +     AY   + + +A+    + L L
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171

Query: 147 DDRYIKAYSRRATARKELG---KLKESIEDSEFALRLEPQN-QEIKKQLAEV-----KSL 197
                  Y  RA A        K   +    E  + +      + K +L E         
Sbjct: 172 KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231

Query: 198 YEKEVFQKASKTLEK 212
                  KA    + 
Sbjct: 232 TINRDKVKADAAWKN 246

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 12/115 (10%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEAEDDCTEALN 145
           LG   +  K++ +A   + + + L P   + Y  RA A        +   A+    + + 
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207

Query: 146 LD--------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 192
           +         D  I+A    A          ++    +  L L+P N++    L 
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK 262

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 5/100 (5%)

Query: 116 TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 175
                   A    K   + EA +   +           Y+RRA    EL K   + +D E
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 176 F---ALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
                +          +   ++  L +K     A +  + 
Sbjct: 62  TYFSKVNATKAKSADFEYYGKI--LMKKGQDSLAIQQYQA 99

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 14/80 (17%), Positives = 19/80 (23%), Gaps = 9/80 (11%)

Query: 96  KQKKFKEAIDCYSRSIALSPT---------AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146
              K   A   Y + I +              A    A  Y   R   +A+      L L
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

Query: 147 DDRYIKAYSRRATARKELGK 166
           D    KA        +    
Sbjct: 251 DPTNKKAIDGLKMKLEHHHH 270

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 1/125 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG        +  A     R++ L P  A  +           R QEA D    AL+++ 
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
            Y++     A +   + +   + +    A+ ++        + +   +    + F+    
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297

Query: 209 TLEKY 213
            + + 
Sbjct: 298 VMNRP 302

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 80.0 bits (198), Expect = 8e-17
 Identities = 14/118 (11%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 70  HISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL 128
            + S  +  +   D  + +          +++E       ++ ++P  A  +A+  + Y 
Sbjct: 124 QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183

Query: 129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
               +  A  +   A+ L     + +++         + +E+++    AL + P    
Sbjct: 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR 241

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 1/128 (0%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           E G    K     EA   +      +P    A+ +  +   +  +   A      A  LD
Sbjct: 26  EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 85

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
            + I  ++  A +         ++      L  +PQ +++     +     +    Q   
Sbjct: 86  PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145

Query: 208 KTLEKYGK 215
                  +
Sbjct: 146 FFFAAPNE 153

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 20/133 (15%), Positives = 38/133 (28%), Gaps = 18/133 (13%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG    + +K   AI   + +  L P     +A  A+++        A       L    
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 149 RYIKAYSRRATAR---------------KELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193
           +Y +  S    A                    + +E       AL + P + ++   L  
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180

Query: 194 VKSLYEKEVFQKA 206
           +        +  A
Sbjct: 181 L--YNLSNNYDSA 191

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 3/115 (2%)

Query: 99  KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRR 157
              +    Y                  ++ LKL    EA               +A+   
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 158 ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
              + E  K   +I     A  L+P++  +   LA   S   +     A  +L  
Sbjct: 62  GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV--SHTNEHNANAALASLRA 114

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 79.0 bits (195), Expect = 3e-17
 Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 16/137 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149
            G     +K +K A+D +S      P +    N    Y  L+   EAE   T ++N D  
Sbjct: 12  EGVLAADKKDWKGALDAFSA--VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 69

Query: 150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI---------KKQLAEVK----- 195
              AY +R     +  K   +I+D + AL     NQ I         K    EV      
Sbjct: 70  LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 129

Query: 196 SLYEKEVFQKASKTLEK 212
              +KE ++KA + L  
Sbjct: 130 MYAKKEEWKKAEEQLAL 146

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 25/134 (18%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-----------------AVAYANRAMAYLKLRR 132
            G   ++ +K+  AI     ++                           N A  Y K   
Sbjct: 77  RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136

Query: 133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 192
           +++AE+    A ++      +   +A       KL        +   + P  +  +    
Sbjct: 137 WKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKL--------YEPVVIPVGRLFRPNER 188

Query: 193 EVKSLYEKEVFQKA 206
           +V  L +K+   KA
Sbjct: 189 QVAQLAKKDYLGKA 202

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 13/96 (13%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 176
           A++  N  +     + ++ A D  +    + D + +           L  + E+ +    
Sbjct: 6   AISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTR 62

Query: 177 ALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
           ++  +        Q   +   Y+ E +  A K L++
Sbjct: 63  SINRDKHLAVAYFQRGML--YYQTEKYDLAIKDLKE 96

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 80.8 bits (200), Expect = 4e-17
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 10/123 (8%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT----------AVAYANRAMAYLKLRRFQEAED 138
           E+G   F+  ++K A   +  ++                    N      KL+++ EA D
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257

Query: 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198
              +AL L  +    YS        +G  + +++    AL L   +      L     +Y
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMY 317

Query: 199 EKE 201
             +
Sbjct: 318 IGD 320

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 1/110 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G+    + +  +A+  Y  +  L     +      + Y      + AE   ++AL++  
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198
                         + G+ K + +    AL                  L 
Sbjct: 191 EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG+ C K KK+ EA+D + +++ L P  A  Y+     +  +  F+ A D    AL L  
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301

Query: 149 RYIKAYSRRATARKELGKLKESIEDSE 175
               + +      +      E+   ++
Sbjct: 302 DDTFSVTMLGHCIEMYIGDSEAYIGAD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 4/125 (3%)

Query: 90  LGNECFKQ-KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           +G        K + A    S++  L  T   A+     ++       +A      A  L 
Sbjct: 96  VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
                               K +      AL + P++  +  ++  V   ++   ++ A 
Sbjct: 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV--AFQNGEWKTAE 213

Query: 208 KTLEK 212
           K    
Sbjct: 214 KWFLD 218

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 6/92 (6%)

Query: 93  ECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK 152
               +    E++D       L        + A  +     F+      +  +  D  +  
Sbjct: 4   NKPSETVIPESVD------GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS 57

Query: 153 AYSRRATARKELGKLKESIEDSEFALRLEPQN 184
                     EL K  E    S   + L P N
Sbjct: 58  CLPVHIGTLVELNKANELFYLSHKLVDLYPSN 89

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 4/118 (3%)

Query: 71  ISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK 129
           I  S+   +   D      L    +    FK      S  +   P  A          ++
Sbjct: 11  IPESVDGLQENLDVVVS--LAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE 68

Query: 130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES-IEDSEFALRLEPQNQE 186
           L +  E      + ++L      ++         +G   E        A  LE     
Sbjct: 69  LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP 126

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 81.4 bits (200), Expect = 1e-16
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L N   +Q   +EA+  Y +++ + P  A A++N A    +  + QEA     EA+ +  
Sbjct: 15  LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
            +  AYS      KE+  ++ +++    A+++ P   +    LA +    +     +A  
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI--HKDSGNIPEAIA 132

Query: 209 TLEK 212
           +   
Sbjct: 133 SYRT 136

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 80.6 bits (198), Expect = 2e-16
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 1/107 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L +   +Q K +EA+  Y  +I +SPT A AY+N      +++  Q A    T A+ ++ 
Sbjct: 49  LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
            +  A+S  A+  K+ G + E+I     AL+L+P   +    LA   
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 71.0 bits (173), Expect = 2e-13
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 1/106 (0%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141
            A +   +GN   + +  + A+ CY+R+I ++P  A A++N A  +       EA     
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135

Query: 142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187
            AL L   +  AY   A   + +    +  E  +  + +     E 
Sbjct: 136 TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 57.1 bits (137), Expect = 7e-09
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 112 ALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES 170
              PT A +  N A    +    +EA     +AL +   +  A+S  A+  ++ GKL+E+
Sbjct: 3   GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 62

Query: 171 IEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
           +   + A+R+ P   +    +     L E +  Q A +   +
Sbjct: 63  LMHYKEAIRISPTFADAYSNMGNT--LKEMQDVQGALQCYTR 102

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 81.0 bits (200), Expect = 1e-16
 Identities = 19/129 (14%), Positives = 44/129 (34%), Gaps = 6/129 (4%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
             +    + +  +AI  Y+ +  L   T + Y    M +++L     A +    +  L  
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV-----KSLYEKEVF 203
                 +           ++ +I   + AL L  + Q  +K  A        +  + +++
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532

Query: 204 QKASKTLEK 212
             A   L +
Sbjct: 533 DAAIDALNQ 541

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 79.9 bits (197), Expect = 3e-16
 Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 8/114 (7%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAMAYLKLRRFQEAEDDC 140
           ELG   F +   + AI+ +  ++ L           A  +AN   AY KL+ +  A D  
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539

Query: 141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194
            + L L       ++  A           +I     +L + P        L   
Sbjct: 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 76.8 bits (189), Expect = 3e-15
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           +G       K  EA   +S+S  + P    A+   A ++       +A    T A  L  
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
                Y        +LG +  + E  + +  L   +  +  +L  V   + K   Q A  
Sbjct: 439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVV--AFNKSDMQTAIN 496

Query: 209 TLEK 212
             + 
Sbjct: 497 HFQN 500

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 66.0 bits (161), Expect = 9e-12
 Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                 +  +  +     +  +   P  AV +    + YL + +  EA    +++  +D 
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184
           ++  A+   A +    G+  ++I     A RL    
Sbjct: 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG+   K K +  AID  ++ + LS   A  +   A+ YL  +    A     E+L +  
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581

Query: 149 RYIKAYSRRATARKE 163
             I A      A +E
Sbjct: 582 NEIMASDLLKRALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 63.7 bits (155), Expect = 4e-11
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 1/121 (0%)

Query: 65  YDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANR 123
           +D V  ++ S  ++E      S   L       +      + Y  SI     ++     +
Sbjct: 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK 311

Query: 124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183
           A       RF +     T+ L +D   +  Y     +  E G+  +    S   +   P+
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371

Query: 184 N 184
            
Sbjct: 372 K 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.9 bits (153), Expect = 8e-11
 Identities = 8/98 (8%), Positives = 30/98 (30%), Gaps = 1/98 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
             +  F + +F + +   ++ + + P     Y     +  +     +      + ++   
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP 370

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
                +         + K+ E+      +  ++PQ   
Sbjct: 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP 408

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 20/194 (10%), Positives = 46/194 (23%), Gaps = 42/194 (21%)

Query: 58  GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT- 116
           G +     D  +     + +     +A+     G        F  A +CY  ++ +    
Sbjct: 174 GETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233

Query: 117 --------------------------------------AVAYANRAMAYLKLRRFQEAED 138
                                                    Y  +          + AED
Sbjct: 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293

Query: 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198
               ++N  ++       +A       +  + +  +   L ++P N ++         L+
Sbjct: 294 -YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLAS--LH 350

Query: 199 EKEVFQKASKTLEK 212
           E     K       
Sbjct: 351 ESGEKNKLYLISND 364

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.2 bits (120), Expect = 9e-07
 Identities = 19/173 (10%), Positives = 49/173 (28%), Gaps = 7/173 (4%)

Query: 31  KKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSE--- 87
                  +       ++  S  + S    S        +    S + E +  +  S    
Sbjct: 25  HANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTSTDGSFLKERNAQNTDSLSRE 84

Query: 88  ---KELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEAL 144
              +   ++   Q+++K A     + + ++         A  Y     +  A+   T+  
Sbjct: 85  DYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKE- 143

Query: 145 NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL 197
           +L +R        A    +L   + ++             +   K L +   +
Sbjct: 144 DLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI 196

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 10/130 (7%)

Query: 91  GNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 150
           G     +K  K A     +   +   A     R   Y  L  F  A++   EAL +D + 
Sbjct: 174 GETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233

Query: 151 IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE----KEVFQKA 206
            +A+ +  +       L  + E+ +  L+L       K+  A ++SLY     K   +  
Sbjct: 234 YEAFDQLVS-----NHLLTADEEWDLVLKLNYSTY-SKEDAAFLRSLYMLKLNKTSHEDE 287

Query: 207 SKTLEKYGKS 216
            +  E Y  S
Sbjct: 288 LRRAEDYLSS 297

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG       +F  AID ++ ++ + P     +           R +EA +  T AL +  
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
            +I++      +   LG  +E++ +   AL L+ +++  ++      S       + A  
Sbjct: 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS 338

Query: 209 TLEKY 213
            +++ 
Sbjct: 339 LMDQP 343

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 19/126 (15%), Positives = 37/126 (29%), Gaps = 3/126 (2%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           E G +  K+      I     +I   P  A A+    +   +    Q A       L L 
Sbjct: 70  EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ 129

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
              +KA    A +       +++ E  +  ++  P+ + + K               K+ 
Sbjct: 130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS--PGLTRRMSKSP 187

Query: 208 KTLEKY 213
                 
Sbjct: 188 VDSSVL 193

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 71.6 bits (176), Expect = 6e-14
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG    + +  + AI    R + L P    A    A++Y      Q+A +     +  + 
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182
           +Y      +  +     ++ +S  DS     ++ 
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 12/102 (11%), Positives = 29/102 (28%), Gaps = 3/102 (2%)

Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEAL 144
           + +          +   + Y  +   +             + +     F  A D    AL
Sbjct: 181 RRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL 240

Query: 145 NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
            +       ++R         + +E++E    AL ++P    
Sbjct: 241 TVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR 282

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 21/150 (14%), Positives = 38/150 (25%), Gaps = 3/150 (2%)

Query: 64  NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN 122
             +  +     +  E       +      E   Q     +   Y                
Sbjct: 11  AVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFE 70

Query: 123 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182
             +  LK             A+  D    +A+      + E    + +I   +  L L+P
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

Query: 183 QNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
            N +    LA   S       Q A + L+ 
Sbjct: 131 NNLKALMALAV--SYTNTSHQQDACEALKN 158

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 15/110 (13%), Positives = 35/110 (31%), Gaps = 13/110 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L          ++A +     I  +P       N+  +    RR  ++  D +    + +
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198

Query: 149 RYIKA------------YSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
            Y++A             +         G+   +I+    AL + P++  
Sbjct: 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS 248

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 17/125 (13%), Positives = 31/125 (24%), Gaps = 11/125 (8%)

Query: 97  QKKFKEAIDCYSRSIALSP---------TAVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
             +F+ A                         + +             +E          
Sbjct: 2   AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
            +           R + G L  +I   E A+  +P + E  + L       E E  Q A 
Sbjct: 62  FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGIT--QAENENEQAAI 119

Query: 208 KTLEK 212
             L++
Sbjct: 120 VALQR 124

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 19/108 (17%), Positives = 47/108 (43%), Gaps = 1/108 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG       ++ +A+DC++ ++++ P   + +           + +EA      AL L  
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
            YI++      +   LG  +E++E    AL ++ +++  + +   +  
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 1/128 (0%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           E G    ++     A+  +  ++   P    A+        +  +   A       L L 
Sbjct: 69  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 128

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
                A    A +       +++ E     LR  P    +     E          ++  
Sbjct: 129 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 188

Query: 208 KTLEKYGK 215
            +L     
Sbjct: 189 GSLLSDSL 196

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 74.7 bits (184), Expect = 6e-15
 Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 3/120 (2%)

Query: 70  HISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMA 126
           H+ +              K +         F E  + +  ++ L PT           + 
Sbjct: 167 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 226

Query: 127 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
           +     + +A D  T AL++       +++         + +E++     AL L+P    
Sbjct: 227 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 286

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 7/123 (5%)

Query: 95  FKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149
           +           Y +                    +  L+      A      A+  D +
Sbjct: 37  WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK 96

Query: 150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKT 209
           +++A+    T + E  +   +I      L L+P NQ     LA   S   + + ++A + 
Sbjct: 97  HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV--SFTNESLQRQACEI 154

Query: 210 LEK 212
           L  
Sbjct: 155 LRD 157

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 62.4 bits (152), Expect = 7e-11
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG       + +EA+  Y R++ L P    +  N  ++ + L   +EA +   EALN+  
Sbjct: 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316

Query: 149 RYIKAYSRRA-----------TARKELGKLKESIEDSEFAL 178
           +                     A   LG+           L
Sbjct: 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 12/69 (17%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP------------TAVAYANRAMAYLKLRRFQEAE 137
           LG  C      +EA++ +  ++ +              +   ++   +A   L +     
Sbjct: 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350

Query: 138 DDCTEALNL 146
                 L+ 
Sbjct: 351 AADARDLST 359

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 78.9 bits (194), Expect = 9e-16
 Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 5/136 (3%)

Query: 79  ESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136
             TPD   +    G      +  +  +    ++  L+P   VA A+       L   Q  
Sbjct: 288 GLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRL 347

Query: 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
                +A  L    + A +     ++ L  ++  +     A  L P            ++
Sbjct: 348 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQA 407

Query: 197 LYEKEVFQKASKTLEK 212
           L   E  Q+    L +
Sbjct: 408 L---ETVQRLLPVLCQ 420

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 78.5 bits (193), Expect = 1e-15
 Identities = 17/131 (12%), Positives = 34/131 (25%), Gaps = 3/131 (2%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141
              +           +  +  +    ++  L P   VA A+       L   Q       
Sbjct: 225 QVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLC 284

Query: 142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 201
           +A  L    + A +     ++ L  ++  +     A  L P                  E
Sbjct: 285 QAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGG--KQALE 342

Query: 202 VFQKASKTLEK 212
             Q+    L +
Sbjct: 343 TVQRLLPVLCQ 353

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 76.6 bits (188), Expect = 4e-15
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 1/110 (0%)

Query: 78  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136
             +     +           +  +  +    ++  L+P   VA A+       L   Q  
Sbjct: 627 GLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 686

Query: 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
                +A  L    + A +     ++ L  ++  +     A  L P    
Sbjct: 687 LPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVV 736

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 75.5 bits (185), Expect = 1e-14
 Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                   +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 198 NNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP 257

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
             + A +     ++ L  ++  +     A  L P                  E  Q+   
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGG--KQALETVQRLLP 315

Query: 209 TLEK 212
            L +
Sbjct: 316 VLCQ 319

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 71.2 bits (174), Expect = 3e-13
 Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 1/98 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G      +  +  +    ++  L+    VA A+       L   Q       +A  L  
Sbjct: 673 NGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 732

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
             + A +     ++ L  ++  +     A  L P    
Sbjct: 733 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVV 770

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 70.4 bits (172), Expect = 4e-13
 Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 3/124 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                   +  +  +    ++  L+P   VA A+       L   Q+      +A  L  
Sbjct: 435 HDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTP 494

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
             + A +     ++ L  ++  +     A  L P                  E  Q+   
Sbjct: 495 DQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGG--KQALETVQRLLP 552

Query: 209 TLEK 212
            L +
Sbjct: 553 VLCQ 556

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 69.7 bits (170), Expect = 7e-13
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 1/99 (1%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
             G      +  +  +    ++  L+    VA A+       L   Q       +A  L 
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 629

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
              + A +     ++ L  ++  +     A  L P    
Sbjct: 630 PAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV 668

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 68.9 bits (168), Expect = 1e-12
 Identities = 13/108 (12%), Positives = 29/108 (26%), Gaps = 1/108 (0%)

Query: 80  STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138
           +     +              +  +    ++  L+P   VA A+       L   Q    
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 552

Query: 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
              +A  L    + A +     ++ L  ++  +     A  L      
Sbjct: 553 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVV 600

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 68.5 bits (167), Expect = 2e-12
 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 1/103 (0%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141
              +    G      +  +  +    ++  L+P   VA A+       L   Q       
Sbjct: 530 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 589

Query: 142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 184
           +A  L    + A +     ++ L  ++  +     A  L P  
Sbjct: 590 QAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 64.7 bits (157), Expect = 3e-11
 Identities = 15/117 (12%), Positives = 33/117 (28%), Gaps = 3/117 (2%)

Query: 97  QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS 155
            +  +  +    ++  L+P   VA A+       L   Q       +   L    + A +
Sbjct: 408 LETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIA 467

Query: 156 RRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
                ++ L  +++ +     A  L P                     Q+    L +
Sbjct: 468 SHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGG--KQALATVQRLLPVLCQ 522

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.7 bits (152), Expect = 1e-10
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 2/99 (2%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
             G      +  +  +    ++  L+P   VA A+       L   Q       +A  L 
Sbjct: 367 SNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLT 425

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
              + A +     ++ L  ++  +        L P    
Sbjct: 426 PDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVV 464

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.8 bits (147), Expect = 5e-10
 Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 5/125 (4%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
                   +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 707 NNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 766

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE-IKKQLAEVKSLYEKEVFQKAS 207
             + A +     ++ L  ++  +        L       I   +   ++L   E  Q+  
Sbjct: 767 AQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQAL---ETVQRLL 823

Query: 208 KTLEK 212
             L +
Sbjct: 824 PVLCQ 828

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.9 bits (142), Expect = 2e-09
 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 6/91 (6%)

Query: 102 EAIDCYSR-----SIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS 155
           EA+           + L+P   VA A+       L   Q       +A  L    + A +
Sbjct: 171 EAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIA 230

Query: 156 RRATARKELGKLKESIEDSEFALRLEPQNQE 186
                ++ L  ++  +     A  L P    
Sbjct: 231 SHDGGKQALETMQRLLPVLCQAHGLPPDQVV 261

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.1 bits (114), Expect = 5e-06
 Identities = 14/117 (11%), Positives = 33/117 (28%), Gaps = 4/117 (3%)

Query: 97  QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS 155
            +  +  +    ++  L+    VA A+       L   Q       +   L    + A +
Sbjct: 816 LETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIA 875

Query: 156 RRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
                ++ L  ++  +        L              ++L   E  Q+    L +
Sbjct: 876 SNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQAL---ETVQRLLPVLCQ 929

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.1 bits (114), Expect = 5e-06
 Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 1/91 (1%)

Query: 97  QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS 155
            +  +  +    ++  L+P   VA A+       L   Q       +   L    + A +
Sbjct: 748 LETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIA 807

Query: 156 RRATARKELGKLKESIEDSEFALRLEPQNQE 186
                ++ L  ++  +     A  L      
Sbjct: 808 SNIGGKQALETVQRLLPVLCQAHGLTQDQVV 838

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 11/108 (10%), Positives = 28/108 (25%), Gaps = 2/108 (1%)

Query: 80  STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 138
           +     +           +  +  +    +   L+    VA A+       L   Q    
Sbjct: 867 TPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGG-KQALETVQRLLP 925

Query: 139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
              +   L    + A +  +  ++ L  ++  +        L P    
Sbjct: 926 VLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVV 973

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 16/112 (14%), Positives = 28/112 (25%), Gaps = 3/112 (2%)

Query: 102 EAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA 160
           +A +     + L     V  A R                    LNL    + A +     
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG 201

Query: 161 RKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
           ++ L  ++  +     A  L P                  E  Q+    L +
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGG--KQALETMQRLLPVLCQ 251

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 3/104 (2%)

Query: 101 KEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 159
           +   +     +A      +        Y +  +F  A      AL+ D  Y  A+     
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 160 ARKELGKLKESIEDSEFALRLEPQNQEI--KKQLAEVKSLYEKE 201
             +  G    + +  E  L       +    K+L        +E
Sbjct: 62  TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARE 105

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 52.7 bits (127), Expect = 7e-09
 Identities = 11/80 (13%), Positives = 22/80 (27%), Gaps = 3/80 (3%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG    + ++F  A+     ++   PT +VA+               A       L    
Sbjct: 25  LGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84

Query: 149 RY--IKAYSRRATARKELGK 166
                +         + L +
Sbjct: 85  SRGDQQVVKELQVFLRRLAR 104

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 1/107 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L +                R +AL P    A A         +R  EA     +A +   
Sbjct: 29  LADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
            +         A ++ G+ + +      A +L P+   I  QL   +
Sbjct: 89  EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR 135

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 3/114 (2%)

Query: 100 FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA 158
               +     ++   P   VA+   A A L +      E      L L   + +A +R  
Sbjct: 5   GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64

Query: 159 TARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
             R    +  E+    + A    P++  I   L     L +    + A+    +
Sbjct: 65  RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA--LEDAGQAEAAAAAYTR 116

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 2/98 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG   + Q++  EA     ++   +P           A     + + A    T A  L  
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
                 ++    R+ L     +++     +R       
Sbjct: 123 EEPYITAQLLNWRRRLCD-WRALDVLSAQVRAAVAQGV 159

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 11/63 (17%), Positives = 18/63 (28%)

Query: 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191
                      A+    +   A+   A A   +G         +  L L P + E   +L
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 192 AEV 194
             V
Sbjct: 64  GRV 66

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 71.7 bits (176), Expect = 3e-15
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 1/118 (0%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
            LG   ++  K+ +A   +     L    A  +         L  +++A    +    +D
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 205
               +     A    +LG L  +      A  L       +   A   ++ E    +K
Sbjct: 83  INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 4/84 (4%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL-- 146
           LG        +++A+  YS    +         + A  +L+L     AE     A  L  
Sbjct: 58  LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117

Query: 147 -DDRYIKAYSRRATARKELGKLKE 169
               +    +R     + +   K+
Sbjct: 118 AQPAHEALAARAGAMLEAVTARKD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 51.7 bits (124), Expect = 3e-08
 Identities = 12/107 (11%), Positives = 30/107 (28%), Gaps = 3/107 (2%)

Query: 107 YSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 165
            +    LS  T            +  ++ +A+        LD    + +      R+ LG
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 166 KLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
             +++++   +   ++          AE     +      A      
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAE--CHLQLGDLDGAESGFYS 111

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 73.1 bits (180), Expect = 7e-15
 Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 5/127 (3%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN--L 146
           L      + + K A + Y +++A     A    N      + +R++EA     EA    L
Sbjct: 77  LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL 136

Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKA 206
                + +        ++ K  ++ E  E +LRL      +  ++A++  LY++  +  A
Sbjct: 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL--LYKEREYVPA 194

Query: 207 SKTLEKY 213
            +  + +
Sbjct: 195 RQYYDLF 201

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 14/100 (14%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALS--PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146
            G   ++QK+++EA      +   +  P  +  + N  +  L++++  +A++   ++L L
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170

Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
           +          A    +  +   + +  +   +   QN  
Sbjct: 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNAR 210

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 1/105 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG    + KK  +A + + +S+ L+          A    K R +  A            
Sbjct: 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG 206

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193
           +  ++        K       +        RL P + E ++  AE
Sbjct: 207 QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQAE 251

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 1/92 (1%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           +LG    ++   ++A     +++ + P+ A A+A  A+ +      + A+++  +AL  D
Sbjct: 42  QLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD 101

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALR 179
            R  +  +       E  + +E+ +    A +
Sbjct: 102 SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 4/124 (3%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAV-AYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
             +    +           ++      A  AY    + YL+    ++A+    +AL +D 
Sbjct: 10  HSSGLVPRGSHMGD-QNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP 68

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 208
               A++  A   +   + K + E+   AL  + +N  +         LYE++ +++A +
Sbjct: 69  SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF--LYEQKRYEEAYQ 126

Query: 209 TLEK 212
            L +
Sbjct: 127 RLLE 130

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 1/60 (1%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           E+ +  +K++++  A   Y          A +                A     +   L 
Sbjct: 180 EMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 72.1 bits (177), Expect = 7e-15
 Identities = 14/113 (12%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY-LKLRRFQEAEDDCTEALNLD 147
                  + + K+A+  Y + + L      A       Y L   + ++  +   + L+  
Sbjct: 94  CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200
            +   A  R   ++    + +++    +  +   P + E +K L ++  + ++
Sbjct: 154 TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP-STEAQKTLDKILRIEKE 205

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 72.1 bits (177), Expect = 8e-15
 Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 4/139 (2%)

Query: 76  MNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ 134
           +++ S   +    EL     K + + +A   Y   +  +P         A   +   + +
Sbjct: 46  VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEK 105

Query: 135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKL-KESIEDSEFALRLEPQNQEIKKQLAE 193
           +A     + L L+   + A            +  K+ +E     L    + Q  + +   
Sbjct: 106 DALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG- 164

Query: 194 VKSLYEKEVFQKASKTLEK 212
             S      ++KA  +L+K
Sbjct: 165 -LSKLFTTRYEKARNSLQK 182

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 20/142 (14%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSP-----------------TAVAYANRAMAYLKLR 131
           +  +   +  +  +A+  + ++IAL+                  ++      A+AY K R
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 191
            + +A     E L      +      A  +   G+ K+++   E  L+LE  N      L
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128

Query: 192 AEVKSLYEK-EVFQKASKTLEK 212
                 Y   E  +K  +T  K
Sbjct: 129 GNY--YYLTAEQEKKKLETDYK 148

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 18/113 (15%)

Query: 116 TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY----------------SRRAT 159
           +      +  A ++  +  +A     + + L+    + Y                +  A 
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 160 ARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
           A K+     ++    +  L+  P N +  +  AE+     +   + A +  EK
Sbjct: 63  AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM--QVCRGQEKDALRMYEK 113

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 64.7 bits (159), Expect = 2e-13
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL LD 
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 149 RYIKAYSRRATARKELG 165
              +A      A+++ G
Sbjct: 75  NNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 58.2 bits (142), Expect = 4e-11
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 112 ALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE 169
           A+ P   A A+ N   AY K   + EA +   +AL LD    +A+     A  + G   E
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61

Query: 170 SIEDSEFALRLEPQNQE 186
           +IE  + AL L+P N E
Sbjct: 62  AIEYYQKALELDPNNAE 78

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 64.5 bits (157), Expect = 9e-13
 Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 1/113 (0%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
            L    ++   +++A   +     L    +  +         + ++  A    +    +D
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200
               +     A    + G+L E+      A  L     E  +    V S+ E 
Sbjct: 86  IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA 138

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 14/115 (12%), Positives = 32/115 (27%), Gaps = 3/115 (2%)

Query: 99  KFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRR 157
                    +    +S  T     + A    +   +++A         LD    + +   
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 158 ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
              R+ +G+   +I    +   ++          AE   L +     +A   L  
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE--CLLQXGELAEAESGLFL 114

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 53.0 bits (127), Expect = 9e-09
 Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 1/84 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG       ++  AI  YS    +         + A   L+     EAE     A  L  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 149 RYIKAYSRRATARKELGKLKESIE 172
              +           L  +K   E
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKE 144

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 64.8 bits (158), Expect = 9e-13
 Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 1/110 (0%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
               + + + + +EA   +                 A  Y    +FQ+A D    A  L 
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL 197
                        +  L    ++ E  E  ++     +   K  + + ++
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAI 150

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 3/128 (2%)

Query: 86  SEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEAL 144
           +  E  +          +        A+         + A  +    R +EAE       
Sbjct: 4   NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63

Query: 145 NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQ 204
             D   +      A   +   + +++ +    A  L   +        +       +   
Sbjct: 64  IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ--CQLRLKAPL 121

Query: 205 KASKTLEK 212
           KA +  E 
Sbjct: 122 KAKECFEL 129

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 94  CFKQKKFKEAIDCYSRSIALS--PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 150
           C +  +  E++  + +++A    PT  +A  N+ +   K  +F  AE     +L    ++
Sbjct: 87  CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF 146

Query: 151 IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
             A+   A  +   G+L ++    +         Q 
Sbjct: 147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 18/104 (17%), Positives = 44/104 (42%), Gaps = 2/104 (1%)

Query: 78  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 136
           E++   +  + +L  E  + + +++A      ++   P   +A+  RA  Y  L+   +A
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 137 EDDCTEALNLDDRYIKAYSRRATA-RKELGKLKESIEDSEFALR 179
           ++   +AL++     +  +         L +  ES+   + AL 
Sbjct: 62  QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 3/94 (3%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
            G    KQ +F  A     RS+A  P    A+   A   +   +  +A+    +  +  +
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182
                        K    L  +    E+  +L+ 
Sbjct: 179 VLQADD--LLLGWKIAKALGNAQAAYEYEAQLQA 210

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 54.6 bits (132), Expect = 9e-09
 Identities = 17/71 (23%), Positives = 33/71 (46%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 176
           +      AM Y++ + +++A     +AL  D +   A+  RA   + L    ++ E    
Sbjct: 8   SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQ 67

Query: 177 ALRLEPQNQEI 187
           AL ++P + EI
Sbjct: 68  ALSIKPDSAEI 78

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 61.3 bits (149), Expect = 7e-12
 Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 99  KFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY 154
              +A+  Y ++IA        A  Y      +  L  +++AE      +     +    
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 155 SRRATARKELGKLKESIEDSEFALRLEPQNQEIKK 189
              A     LG+ ++ +E     +     ++ I+ 
Sbjct: 65  VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL-- 146
           LG+      ++++A    +  +   P         AM    L R+++  +   + +    
Sbjct: 33  LGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92

Query: 147 DDRYIKAYSR 156
           DD  I++Y +
Sbjct: 93  DDETIQSYKQ 102

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 132 RFQEAEDDCTEALNL---DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 188
              +A     +A+          + Y    +  + LG+ +++       ++  P +Q ++
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 189 KQLAEVKSLYEKEVFQKASKTLEK 212
              A V  LY    +++  + L K
Sbjct: 65  VFYAMV--LYNLGRYEQGVELLLK 86

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 60.4 bits (147), Expect = 8e-12
 Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 6/89 (6%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L  E  K      A+  +   +   P     Y +    Y +L R  +A D   + + +  
Sbjct: 13  LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFA 177
                         EL   K   E  E  
Sbjct: 73  EEGTQK-----DLSELQDAKLKAEGLEHH 96

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 57.7 bits (140), Expect = 8e-11
 Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 7/97 (7%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 176
                  A  +LK      A     E +  D  Y+  Y       + L +  ++I+    
Sbjct: 7   PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66

Query: 177 ALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKY 213
            +       E+ ++    K L E +  +  ++ LE +
Sbjct: 67  GI-------EVAREEGTQKDLSELQDAKLKAEGLEHH 96

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 65.8 bits (160), Expect = 8e-12
 Identities = 15/124 (12%), Positives = 41/124 (33%), Gaps = 8/124 (6%)

Query: 97  QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF-QEAEDDCTEALNLDDRYIKAY 154
           Q++ ++ +      +  +   A A   +  A      +  EAE   ++A+ L+   ++A+
Sbjct: 81  QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW 140

Query: 155 SRRATARKELGKLKESIEDSEFALRLEPQNQE------IKKQLAEVKSLYEKEVFQKASK 208
           ++      + G +  +      AL              + +QL              + +
Sbjct: 141 NQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR 200

Query: 209 TLEK 212
             + 
Sbjct: 201 QAKL 204

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 65.4 bits (159), Expect = 1e-11
 Identities = 15/112 (13%), Positives = 39/112 (34%), Gaps = 17/112 (15%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKL---------RRFQEAEDDC 140
           LG   +K+     A  C+S ++      V+  N +M   +L         R   ++    
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202

Query: 141 TEALNLDDRYIKAYSRRATA--------RKELGKLKESIEDSEFALRLEPQN 184
             A+ +D    +++     A         +     ++++     A +++ + 
Sbjct: 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 62.7 bits (152), Expect = 8e-11
 Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 17/145 (11%)

Query: 87  EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL--------KLRRFQEAE 137
           + +  +     +   +++     ++ +      ++     AYL          +  Q+A 
Sbjct: 182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241

Query: 138 DDCTEALNLDDR---YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194
               +A  +D +       +  RAT  K      E++E    A  L+P   E +++  ++
Sbjct: 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQL 301

Query: 195 KSLYEKEVFQKASKTLEKYGKSGMK 219
                +         LE  GK+  K
Sbjct: 302 LEFLSR--LTSL---LESKGKTKPK 321

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 60.8 bits (147), Expect = 4e-10
 Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 8/118 (6%)

Query: 96  KQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI 151
             K  ++A+  Y+++  +          + NRA  +     + EA +  ++A  LD  + 
Sbjct: 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292

Query: 152 KAYSRRATARKELGKLKESIEDSEFALRLEPQN-QEIKKQLAEVKSLYEKEVFQKASK 208
           +   R     + L +L   +E      + +P+  Q +   L         +   +++ 
Sbjct: 293 EPQQREQQLLEFLSRLTSLLESKG---KTKPKKLQSMLGSLRPAHLGPCGDGRYQSAS 347

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 56.9 bits (137), Expect = 5e-09
 Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 12/106 (11%)

Query: 90  LGNECFKQKKF-KEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
            G        +  EA    S+++ L P    A+      Y K      A    + AL   
Sbjct: 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC 167

Query: 148 DRYIKAYSRRATARKELGK---------LKESIEDSEFALRLEPQN 184
                +    +   ++L           + +S+  ++ A++++  +
Sbjct: 168 KNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD 212

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 1/96 (1%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           E G    K     EA   +       P    A+ +  +   +  +   A      A  LD
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183
            + I  ++  A +         ++      L  +PQ
Sbjct: 82  PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 2/91 (2%)

Query: 122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181
              ++ LKL    EA          +    +A+      + E  K   +I     A  L+
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 182 PQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
           P++  +   LA   S   +     A  +L  
Sbjct: 82  PKDIAVHAALAV--SHTNEHNANAALASLRA 110

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 1/62 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG    + +K   AI   + +  L P     +A  A+++        A       L    
Sbjct: 57  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

Query: 149 RY 150
           +Y
Sbjct: 117 QY 118

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 63.8 bits (155), Expect = 4e-11
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 8/124 (6%)

Query: 96  KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ----EAEDDCTEALNLDDRY 150
                + AID   ++I L+P         A+   K+R       E E    EAL      
Sbjct: 187 NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246

Query: 151 IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTL 210
                  A   +   +  ++IE  + AL   P N  +  Q+      Y  +VFQ  +   
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG---CCYRAKVFQVMNLRE 303

Query: 211 EKYG 214
               
Sbjct: 304 NGMY 307

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 10/139 (7%)

Query: 82  PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF---QEAE 137
           P+   E+          + + A  C+ +++   P      +  A+A  +L  +   Q A 
Sbjct: 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAI 195

Query: 138 DDCTEALNLDDRYIKAYSRRATA----RKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193
           D   +A+ L+          A      R+E  +  E  +  E AL   P   ++ +  A+
Sbjct: 196 DPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAK 255

Query: 194 VKSLYEKEVFQKASKTLEK 212
                 K+   KA + L+K
Sbjct: 256 F--YRRKDEPDKAIELLKK 272

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 56.9 bits (137), Expect = 6e-09
 Identities = 9/130 (6%), Positives = 44/130 (33%), Gaps = 5/130 (3%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141
               E  +  +    +    A+    ++   +       +  A  +    +++EAE    
Sbjct: 299 MNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQ 358

Query: 142 EALNLDDRYIKA----YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL 197
           +  + +   +               ++    ++I      +++  +++E +K   +++ +
Sbjct: 359 KEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKI 418

Query: 198 YEKEVFQKAS 207
            +  + +  +
Sbjct: 419 AKMRLSKNGA 428

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 13/117 (11%), Positives = 30/117 (25%), Gaps = 20/117 (17%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK------------------- 129
                 ++ +  +AI+   +++   P  A  +      Y                     
Sbjct: 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312

Query: 130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
           L     A     +A   +D   +  S  A+      + +E+    +     E     
Sbjct: 313 LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 53.4 bits (128), Expect = 7e-08
 Identities = 16/143 (11%), Positives = 40/143 (27%), Gaps = 22/143 (15%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L     + ++  E       ++  +P       + A  Y +     +A +   +AL    
Sbjct: 219 LHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278

Query: 149 RYIKAYSRRATA-------------------RKELGKLKESIEDSEFALRLEPQNQEIKK 189
                + +                       RK L  +  ++   + A         +  
Sbjct: 279 NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS 338

Query: 190 QLAEVKSLYEKEVFQKASKTLEK 212
            LA +      + +++A    +K
Sbjct: 339 ILASL--HALADQYEEAEYYFQK 359

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 23/139 (16%), Positives = 43/139 (30%), Gaps = 16/139 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP---------TAVAYANRAMAYLKL--RRFQEAED 138
                +   +  +      +   +           +           LK    + + A+ 
Sbjct: 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKV 159

Query: 139 DCTEALNLDDRYIKAYSRRATAR---KELGKLKESIEDSEFALRLEPQNQEIKKQLAEV- 194
              +AL    +  +  S  A A          + +I+    A+RL P NQ +K  LA   
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219

Query: 195 -KSLYEKEVFQKASKTLEK 212
            K   E E   +  K +E+
Sbjct: 220 HKMREEGEEEGEGEKLVEE 238

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 9/90 (10%)

Query: 95  FKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY 154
           ++ K   +AI  +   + ++  +           K+             L+ +    +A 
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKI---------AKMRLSKNGADSEAL 433

Query: 155 SRRATARKELGKLKESIEDSEFALRLEPQN 184
              A  ++   K++++ EDSE  L      
Sbjct: 434 HVLAFLQELNEKMQQADEDSERGLESGSLI 463

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 19/146 (13%), Positives = 49/146 (33%), Gaps = 22/146 (15%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP----------TAVAYANRAMAYLKLRRFQEAEDD 139
           L      + + + A++C  ++  L            + V + N A  Y  + R  + +  
Sbjct: 57  LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIY 116

Query: 140 CTEALNLDDRYIKAYSRR----------ATARKELGKLKESIEDSEFALRLEPQNQEIKK 189
             +  ++ +++   Y                +    + + +    E AL  +P+N E   
Sbjct: 117 VDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTS 176

Query: 190 QLAEVKSLYEKEVFQKASKTLEKYGK 215
            LA     Y  + +  +   ++   +
Sbjct: 177 GLAIA--SYRLDNWPPSQNAIDPLRQ 200

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 58.4 bits (140), Expect = 2e-10
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 24/154 (15%)

Query: 78  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------AVAYANRA 124
            +    A              ++ EA     R++ +S T             A  +A  A
Sbjct: 5   LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLA 64

Query: 125 MAYLKLRRFQEAEDDCTEALNLDDR-----------YIKAYSRRATARKELGKLKESIED 173
            A   LR F EA     +AL+  +R           +I A   RA A   LG+  E++ +
Sbjct: 65  EALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE 124

Query: 174 SEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
            +  + +  + +        +  +    + Q  +
Sbjct: 125 FKKVVEMIEERKGETPGKERMMEVAIDRIAQLGA 158

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNL 146
           +   E   Q   + A+      +   P     AY     AY KL  +Q+A ++   A+ L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 147 DDRYIKAYSRR 157
           +       +R+
Sbjct: 65  NPDSPALQARK 75

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 14/85 (16%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 122 NRAMAYLKLRRFQEAEDDCTEALNLD-DRYIKAYSRRATARKELGKLKESIEDSEFALRL 180
                 +     + A     E L  +     +AY     A ++LG  ++++ + + A+ L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 181 EPQNQEI--KKQLAEVKSLYEKEVF 203
            P +  +  +K + ++ + Y K+++
Sbjct: 65  NPDSPALQARKMVMDILNFYNKDMY 89

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 6e-09
 Identities = 65/433 (15%), Positives = 126/433 (29%), Gaps = 103/433 (23%)

Query: 85  TSEKELGN----ECFKQKKFKEAIDC-----YSRS---------IALSPTAVAYANRAMA 126
           T E +         F +  F +  DC       +S         I +S  AV+   R   
Sbjct: 11  TGEHQYQYKDILSVF-EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 127 YLKLRRFQEAEDDCTEALNLDDRYIKAYSR-RATARKELGKLKESIEDSEFALRLEPQNQ 185
            L  ++ +  +    E L ++ +++   S  +   R+     +  IE  +   RL   NQ
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFL--MSPIKTEQRQPSMMTRMYIEQRD---RLYNDNQ 124

Query: 186 EIKKQLAEVKSLYEKEVFQKASKTLEK------YGKSGMKVNGHEVRAVRNTIQKTGVAE 239
              K    V  L      ++A   L         G  G    G    A+ +      V  
Sbjct: 125 VFAKY--NVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---GKTWVAL-DVCLSYKVQC 178

Query: 240 IQD-----LTISKKTENK-------NL--RDESKTEGQRDGSGANATHISGLDKR----- 280
             D     L +      +        L  + +     + D S      I  +        
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 281 -NHRTKKA--VLDASVQELAT-RA---------TSR--AVAEAAKNITPPKSAYEFEVSW 325
            +   +    VL  +VQ      A         T+R   V +     T    + +     
Sbjct: 239 KSKPYENCLLVLL-NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM- 296

Query: 326 RGFAGDHALQ--ARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLE 383
                D       + L    P  LP   +  L+ +     + ++A      +       +
Sbjct: 297 -TLTPDEVKSLLLKYLD-CRPQDLP---REVLTTNPR--RLSIIAESIRDGLAT-WDNWK 348

Query: 384 YLTMVPRFDLVI-MCLSLADKADLRKVWDE--TFCNESTPI---------------EYAE 425
           ++    +   +I   L++ + A+ RK++D    F   S  I               +   
Sbjct: 349 HVN-CDKLTTIIESSLNVLEPAEYRKMFDRLSVF-PPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 426 ILDNLRSKYCLSQ 438
           +++ L     + +
Sbjct: 407 VVNKLHKYSLVEK 419

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 55.1 bits (132), Expect = 2e-08
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 95  FKQKKFKEAIDCYSRSIALSP---TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI 151
             +K+           + L      ++ Y  +A++ L   +  E+       ++L+  ++
Sbjct: 252 LDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL 311

Query: 152 KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187
             Y       +  G  +E+ +    A  L P    +
Sbjct: 312 -NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 12/58 (20%), Positives = 18/58 (31%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
                  + K  E+    +  I L  + + Y      Y      +EA D    A NL 
Sbjct: 283 KAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 11/99 (11%)

Query: 95  FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE----------A 143
              K    A +     +  SP    A A +A+  +        ++               
Sbjct: 210 GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269

Query: 144 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182
           L   +     Y  +A +    GK  ES +     + LE 
Sbjct: 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM 308

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 54.4 bits (130), Expect = 2e-08
 Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 1/109 (0%)

Query: 97  QKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS 155
            +K ++A   +         T +    +A  ++   R++ AE    EAL+ D  + +   
Sbjct: 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238

Query: 156 RRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQ 204
                 + LGK  E        L+   ++    K+    ++ +++ V Q
Sbjct: 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQ 287

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 49.0 bits (116), Expect = 1e-06
 Identities = 15/114 (13%), Positives = 30/114 (26%), Gaps = 3/114 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAV-AYANRAMAYLKL--RRFQEAEDDCTEALNL 146
                 K  +   A     +       A       A   L     + Q+A     E  + 
Sbjct: 136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195

Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 200
               +   + +A      G+ + +    + AL  +  + E    L  +     K
Sbjct: 196 CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 21/153 (13%), Positives = 44/153 (28%), Gaps = 8/153 (5%)

Query: 62  SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYA 121
           SR    V+ +   +       + T      +  F  +    A+    +  +L       A
Sbjct: 79  SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE----CMA 134

Query: 122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG--KLKESIEDSEFALR 179
                 LKL R   A  +  +  + D+         A      G  KL+++    +    
Sbjct: 135 MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD 194

Query: 180 LEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 212
                  +    A       +  ++ A   L++
Sbjct: 195 KCSPTLLLLNGQAAC--HMAQGRWEAAEGVLQE 225

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 10/98 (10%), Positives = 32/98 (32%), Gaps = 7/98 (7%)

Query: 96  KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY 154
             +   + ++  +  +        A+ +R     + + +        + L  D R    +
Sbjct: 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 237

Query: 155 SRRATARKELGK------LKESIEDSEFALRLEPQNQE 186
           ++R               L+  ++ +   ++L P N+ 
Sbjct: 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES 275

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 20/128 (15%), Positives = 35/128 (27%), Gaps = 17/128 (13%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIAL-------SPTAVAYANRAMAYLKLRRFQEA 136
           + +   LG       +F EA   +             +    A     M       +  A
Sbjct: 26  SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85

Query: 137 EDDCTEALNL-----DDRYIKA--YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK 189
                E   L     +D    +      AT     G L  + ++ E +L      Q+   
Sbjct: 86  RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY---AQQADD 142

Query: 190 QLAEVKSL 197
           Q+A   + 
Sbjct: 143 QVAIACAF 150

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 14/120 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEAL 144
            G    K    +  +  +  ++ +        +  Y+    AY  L  + +A +     L
Sbjct: 15  EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74

Query: 145 NL----DDRYIKA--YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198
            L     D+  +A          K LG   E+I   +  L +   ++E+  ++ E ++LY
Sbjct: 75  TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI---SRELNDKVGEARALY 131

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 24/142 (16%)

Query: 76  MNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAY 127
           +  E     +    +LGN  F    + +A++ +   + L+ T       A A  N     
Sbjct: 38  VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97

Query: 128 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR---------KELGKLKESIEDSEFAL 178
             L  F EA   C   L++     +   +   AR            GK        +   
Sbjct: 98  KVLGNFDEAIVCCQRHLDI---SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGE 154

Query: 179 RLEPQNQEIKKQLAEVKSLYEK 200
             E     ++  +      YE+
Sbjct: 155 FPEEVRDALQAAV----DFYEE 172

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 16/122 (13%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALS-------PTAVAYANRAMAYLKLRRFQEAEDDCTE 142
           LGN  +    F++A+  + + + ++           AY+N   AY+ L  F+ A +   +
Sbjct: 193 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252

Query: 143 ALN----LDDRYIKA--YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
            L     L DR ++A            L   +++I+     L +    QE+  ++ E ++
Sbjct: 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI---AQELNDRIGEGRA 309

Query: 197 LY 198
            +
Sbjct: 310 CW 311

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 19/122 (15%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALS-------PTAVAYANRAMAYLKLRRFQEAEDDCTE 142
           LGN     + +++AID + + +A++           A  +   AY  L    +A     +
Sbjct: 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332

Query: 143 ALN----LDDRYIKAYSRR--ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
            L     + D+  +  +R   +  +  LG    +         +  +N EI   L  V+ 
Sbjct: 333 HLEISREVGDKSGELTARLNLSDLQMVLGLSYST------NNSIMSENTEIDSSLNGVRP 386

Query: 197 LY 198
             
Sbjct: 387 KL 388

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 14/120 (11%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEAL 144
            G    K    +  +  +  ++ +        +  Y+    AY  L  + +A +     L
Sbjct: 11  EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70

Query: 145 N----LDDRYIKA--YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 198
                + D+  +A          K LG   E+I   +  L +   ++E+  ++ E ++LY
Sbjct: 71  TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI---SRELNDKVGEARALY 127

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 24/142 (16%)

Query: 76  MNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAY 127
           +  E     +    +LGN  F    + +A++ +   + L+ T       A A  N     
Sbjct: 34  VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93

Query: 128 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR---------KELGKLKESIEDSEFAL 178
             L  F EA   C   L++     +   +   AR            GK        +   
Sbjct: 94  KVLGNFDEAIVCCQRHLDI---SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGE 150

Query: 179 RLEPQNQEIKKQLAEVKSLYEK 200
             E     ++  +     LYE+
Sbjct: 151 FPEDVRNALQAAV----DLYEE 168

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 16/122 (13%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALS-------PTAVAYANRAMAYLKLRRFQEAEDDCTE 142
           LGN  +    F++A+  + + + ++           AY+N   AY+ L  F+ A +   +
Sbjct: 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248

Query: 143 ALN----LDDRYIKA--YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
            L     L DR ++A            L   +++I+     L +    QE+K ++ E ++
Sbjct: 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI---AQELKDRIGEGRA 305

Query: 197 LY 198
            +
Sbjct: 306 CW 307

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-------TAVAYANRAMAYLKLRRFQEAEDDCTE 142
           LGN     + +++AID + + +A++           A  +   AY  L    +A     +
Sbjct: 269 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328

Query: 143 ALNL 146
            L +
Sbjct: 329 HLEI 332

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 8/128 (6%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAV-AYANRAMAYLKL---RRFQEAEDDCTEALN 145
           LG     Q  +  ++  Y +++ L       YA  A             +      +AL 
Sbjct: 50  LGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALA 109

Query: 146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 205
           LD   I A    A+         ++IE  +  + L        + +   +S+   ++ Q+
Sbjct: 110 LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV---ESINMAKLLQR 166

Query: 206 ASKTLEKY 213
            S  LE +
Sbjct: 167 RSD-LEHH 173

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 9/133 (6%)

Query: 76  MNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIAL-------SPTAVAYANRAMAY 127
              E     +    +LGN  F    + +A+  +   + L          A +  N     
Sbjct: 77  AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTL 136

Query: 128 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 187
             + RF EA   C   L L  R +        A   LG +  +               ++
Sbjct: 137 KVMGRFDEAAICCERHLTL-ARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195

Query: 188 KKQLAEVKSLYEK 200
           K+ L      Y++
Sbjct: 196 KEALTRAVEFYQE 208

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 22/125 (17%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIAL-------SPTAVAYANRAMAYLKLRRFQEAEDDCTE 142
           LGN  +    F+ AI+ +   + +       +    A +N   +++ L +F++A +    
Sbjct: 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288

Query: 143 ALNLDDRYIKAYSRRATAR---------KELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193
            L L    ++   R   A+           L +   +IE     L +    QE+  ++ E
Sbjct: 289 TLAL---AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI---AQELGDRIGE 342

Query: 194 VKSLY 198
            ++ +
Sbjct: 343 ARACW 347

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 25/181 (13%), Positives = 58/181 (32%), Gaps = 26/181 (14%)

Query: 58  GNSYSRNYDP---VSHISSSL-----MNEESTPDATSEKELGNECFKQKKFKEAIDCYSR 109
             +Y         + HI  +L         S     S   +       K + +A+     
Sbjct: 148 AEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEA 207

Query: 110 SIALSP-------TAVAYANRAMAYLKLRRFQEAEDDCTEALNL-----DDRYIKAYSRR 157
           ++ L+         A++  N A +Y +    Q A +   +A  +      D   K     
Sbjct: 208 ALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267

Query: 158 ATARKELGKLKESIEDSEFALRL--EPQNQEIKKQLAEVKSLY----EKEVFQKASKTLE 211
           +    + G+ +++ +  E  L       ++  K+    ++++Y    ++          E
Sbjct: 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327

Query: 212 K 212
           K
Sbjct: 328 K 328

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 12/112 (10%), Positives = 34/112 (30%), Gaps = 3/112 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTA--VAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           L     K  + ++A       +          Y    +    + +    E    + L+  
Sbjct: 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 199
           ++    ++      +    + ES    E A     +  + ++ + + + LY 
Sbjct: 327 EK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYA 377

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 18/109 (16%)

Query: 82  PD-ATSEKELGNECFKQKKFKEAIDCYSRSIALS--------P-TAVAYANRAMAYLKLR 131
           PD AT    L      Q K+KEA    + ++A+         P  A    N A+ Y K  
Sbjct: 40  PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99

Query: 132 RFQEAEDDCTEALNLDDR--------YIKAYSRRATARKELGKLKESIE 172
           +++EAE  C  AL + ++          K  +  A   +  GK +E   
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 26/119 (21%), Positives = 38/119 (31%), Gaps = 19/119 (15%)

Query: 82  PD-ATSEKELGNECFKQKKFKEAIDCYSRSIA-----LSP----TAVAYANRAMAYLKLR 131
           PD A     L   C  Q K +E    Y R++      L P     A    N A  YLK  
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183

Query: 132 RFQEAEDDCTEALNLDDRYI---------KAYSRRATARKELGKLKESIEDSEFALRLE 181
           ++Q+AE    E L                  +       +   K ++S    E+    +
Sbjct: 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK 242

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 19/117 (16%)

Query: 82  PD-ATSEKELGNECFKQKKFKEAIDCYSRSIA-----LSP----TAVAYANRAMAYLKLR 131
           PD A     L   C  Q K++E    Y R++      L P     A    N A  YLK  
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG 209

Query: 132 RFQEAEDDCTEALNLDDRYI---------KAYSRRATARKELGKLKESIEDSEFALR 179
           +F++AE    E L                  +       +  GK K+     E+   
Sbjct: 210 KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 18/109 (16%)

Query: 82  PD-ATSEKELGNECFKQKKFKEAIDCYSRSIALS--------P-TAVAYANRAMAYLKLR 131
           PD AT    L      Q K+K+A +  + ++A+         P  A    N A+ Y K  
Sbjct: 66  PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 125

Query: 132 RFQEAEDDCTEALNLDDR--------YIKAYSRRATARKELGKLKESIE 172
           +++EAE  C  AL + ++          K  +  A   +  GK +E   
Sbjct: 126 KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY 174

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 25/128 (19%)

Query: 82  PD-ATSEKELGNECFKQKKFKEAIDCYSRSIALS--------P-TAVAYANRAMAYLKLR 131
           P    +   L  +   Q +++ A+    +++           P  A      A+ Y    
Sbjct: 24  PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN 83

Query: 132 RFQEAEDDCTEALNLDDR--------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 183
           ++++A +   +AL + ++             +  A    + GK KE       A  L  +
Sbjct: 84  KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE-------AEPLCKR 136

Query: 184 NQEIKKQL 191
             EI++++
Sbjct: 137 ALEIREKV 144

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 22/124 (17%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIAL-------SPTAVAYANRAMAYLKLRRFQEAEDDCTE 142
           LGN  +    F++A+  + + + +       +   +AY+N   AY+ L  F+ A +   +
Sbjct: 15  LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74

Query: 143 ALNLDDRYIKAYSRRATAR---------KELGKLKESIEDSEFALRLEPQNQEIKKQLAE 193
            L L     +   R   A+           L   +++I+     L +    QE+K ++ E
Sbjct: 75  TLLL---ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI---AQELKDRIGE 128

Query: 194 VKSL 197
            ++ 
Sbjct: 129 GRAC 132

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 18/168 (10%), Positives = 52/168 (30%), Gaps = 27/168 (16%)

Query: 61  YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP----- 115
           Y  +      +                          K++++AI  + ++ +++      
Sbjct: 173 YKEHEAYNIRLLQCHSL------------FATNFLDLKQYEDAISHFQKAYSMAEAEKQP 220

Query: 116 --TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD------RYIKAYSRRATARKELGKL 167
                   N  +      ++++A      A+ + +         +AY        +LGK+
Sbjct: 221 QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKI 280

Query: 168 KESIEDSEFALRL--EPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKY 213
            ++ E     +    +  +     +   +KSLY     ++A +    +
Sbjct: 281 DKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 20/115 (17%), Positives = 44/115 (38%), Gaps = 3/115 (2%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTA--VAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           +    +K  K  +A + +S+ +A S  A  V Y +       L      E+      +  
Sbjct: 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL 329

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 202
           +     Y+       ++ K     ++ + A     + +++++ +    SLYE EV
Sbjct: 330 ES-KMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV 383

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	438
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.84
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.82
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.81
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.8
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.79
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.79
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.79
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.76
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.76
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.75
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.75
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.75
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.74
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.73
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.72
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.72
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.72
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.72
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.71
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.7
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.7
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.69
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.69
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.69
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.68
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.68
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.67
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.67
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.67
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.67
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.66
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.66
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.66
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.66
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.66
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.66
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.65
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.65
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.65
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.65
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.64
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.64
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.64
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.64
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.64
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.64
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.63
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.63
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.63
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.62
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.62
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.62
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.62
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.61
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.61
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.61
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.61
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.6
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.6
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.6
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.59
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.59
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.59
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.59
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.59
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.59
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.58
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.58
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.58
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.57
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.57
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.57
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.57
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.56
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.56
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.56
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.55
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.55
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.55
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.54
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.54
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.53
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.53
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.53
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.53
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.52
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.52
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.52
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.52
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.51
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.51
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.5
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.5
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.5
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.49
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.49
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.49
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.47
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.47
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.47
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.46
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.46
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.45
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.45
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.44
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.44
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.44
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.44
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.44
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.44
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.43
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.42
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.42
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.42
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.41
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.41
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.4
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.4
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.39
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.39
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.39
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.39
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.39
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.39
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.39
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.38
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.38
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.38
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.37
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.37
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.36
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.36
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.35
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.35
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.35
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.35
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.34
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.34
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.33
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.33
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.33
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.33
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.32
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.32
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.31
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.3
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.3
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.3
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.3
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.29
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.28
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.28
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.28
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.28
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.27
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.27
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.26
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.26
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.26
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.25
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.24
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.24
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.24
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.24
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.23
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.22
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.2
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.2
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.19
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.19
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.19
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.16
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.16
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.15
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.15
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.14
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.13
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.11
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.11
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.09
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.08
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.06
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.98
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.93
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.89
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.86
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.85
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.82
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.81
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.81
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.79
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.78
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.78
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.74
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.74
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.72
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.67
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.62
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.62
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.57
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.57
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.57
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.55
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.54
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.53
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.51
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.49
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.45
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.42
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.39
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.36
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.25
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.25
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.25
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.91
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.85
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.77
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.76
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.69
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.68
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.42
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.35
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.26
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.2
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.87
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.87
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.83
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.66
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.26
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.0
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.2
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.63
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.37
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.29
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.1
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.4
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.15
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.14
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	92.44
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	92.32
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	92.06
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	92.03
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	90.76
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	90.69
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	90.55
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	89.95
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	88.24
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	88.02
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	86.48
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.57
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	82.08

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.84  E-value=1.4e-20  Score=158.52  Aligned_cols=120  Identities=30%  Similarity=0.508  Sum_probs=111.7

Q ss_pred             hhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHH
Q 013696           74 SLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK  152 (438)
Q Consensus        74 al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~  152 (438)
                      +..++|+...+  ++++|+.|++.|+|++|+.+|+++++++|. +.+|+++|.||..+|++++|+.+|++++.++|+++.
T Consensus         5 ~a~inP~~a~~--~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~   82 (126)
T 4gco_A            5 LAYINPELAQE--EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK   82 (126)
T ss_dssp             --CCCHHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHCHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence            34467776666  889999999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013696          153 AYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (438)
Q Consensus       153 a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  195 (438)
                      +|+++|.++..+|++++|+.+|+++++++|++.+++..+..++
T Consensus        83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999999988877653

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.82  E-value=4.1e-20  Score=160.30  Aligned_cols=138  Identities=12%  Similarity=0.018  Sum_probs=123.9

Q ss_pred             CCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc
Q 013696           54 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR  131 (438)
Q Consensus        54 ~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~  131 (438)
                      ++|..| ..|++++|+..+.+++..+|..+.+  ++.+|.+|+..|+|++|+.+|.++++++|+ +.+|+++|.+|..+|
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~--~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIK--GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTT--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            467777 7799999999999999999887777  679999999999999999999999999999 999999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHH
Q 013696          132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED-SEFALRLEPQNQEIKKQLAE  193 (438)
Q Consensus       132 ~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~-~~~al~l~P~~~~~~~~l~~  193 (438)
                      ++++|+.+|++++.++|+++.+|+++|.++..+|++++|... ++++++++|+++.+......
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~  142 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQ  142 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999887765 59999999999988654443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.81  E-value=1.6e-19  Score=166.00  Aligned_cols=172  Identities=16%  Similarity=0.146  Sum_probs=140.3

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHH
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE   89 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~   89 (438)
                      .++..+...++|++++....+.+...+         .....+..+|..| ..|++++|+..|++++.++|++..+  +..
T Consensus        10 ~lg~~~~~~g~~~~A~~~~~~al~~~p---------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a--~~~   78 (217)
T 2pl2_A           10 RLGVQLYALGRYDAALTLFERALKENP---------QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG--YMV   78 (217)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTSS---------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH--HHH
Confidence            345566677788888888888886554         1222344455555 7888999999999999999888887  668


Q ss_pred             HHHHHHHh-----------ccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHH
Q 013696           90 LGNECFKQ-----------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRR  157 (438)
Q Consensus        90 ~g~~~~~~-----------g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~l  157 (438)
                      +|.++...           |++++|+.+|.++++++|+ +.++.++|.+|..+|++++|+..|++++.++ +++.+++.+
T Consensus        79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l  157 (217)
T 2pl2_A           79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence            89999988           9999999999999999988 8888999999999999999999999999988 888999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013696          158 ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (438)
Q Consensus       158 g~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a  194 (438)
                      |.++..+|++++|+..|+++++++|++..++..+..+
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~  194 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA  194 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            9999999999999999999999999888775544433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.80  E-value=4.4e-19  Score=157.41  Aligned_cols=154  Identities=18%  Similarity=0.201  Sum_probs=143.6

Q ss_pred             CCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh
Q 013696           53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  130 (438)
Q Consensus        53 ~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l  130 (438)
                      ..+|..| ..|++++|+..|++++.++|++..+  +..+|.+|...|++++|+..+.+++...|. +.++.++|.++...
T Consensus         9 ~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (184)
T 3vtx_A            9 MDIGDKKRTKGDFDGAIRAYKKVLKADPNNVET--LLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMI   86 (184)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHc
Confidence            3456666 7899999999999999999999988  779999999999999999999999999999 99999999999999


Q ss_pred             cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHH
Q 013696          131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEK  200 (438)
Q Consensus       131 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~k  200 (438)
                      ++++.|+..+.+++.++|.++.++..+|.++..+|++++|+..|+++++++|.+..+          .+++.+|...|++
T Consensus        87 ~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  166 (184)
T 3vtx_A           87 DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKK  166 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999887          4677899999999


Q ss_pred             HHhhchhh
Q 013696          201 EVFQKASK  208 (438)
Q Consensus       201 a~~~~~~~  208 (438)
                      ++.+++..
T Consensus       167 al~~~p~~  174 (184)
T 3vtx_A          167 ALEKEEKK  174 (184)
T ss_dssp             HHHTTHHH
T ss_pred             HHhCCccC
Confidence            99887654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.79  E-value=1.4e-19  Score=195.08  Aligned_cols=157  Identities=23%  Similarity=0.230  Sum_probs=141.7

Q ss_pred             cccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHH
Q 013696           47 SLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA  124 (438)
Q Consensus        47 ~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la  124 (438)
                      +....+..+|..| .+|++++|+.+|+++++++|++..+  +.++|.+|...|++++|+.+|+++++++|+ +.+|+++|
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a--~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg   84 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA--HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3344455667777 8999999999999999999999988  779999999999999999999999999999 99999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH----------HH
Q 013696          125 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA----------EV  194 (438)
Q Consensus       125 ~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~----------~a  194 (438)
                      .+|..+|++++|+.+|++|++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..+.          +|
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998855443          45


Q ss_pred             HHHHHHHHhhc
Q 013696          195 KSLYEKEVFQK  205 (438)
Q Consensus       195 ~~~~~ka~~~~  205 (438)
                      .+.|++++.+.
T Consensus       165 ~~~~~kal~l~  175 (723)
T 4gyw_A          165 DERMKKLVSIV  175 (723)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            66666666654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.79  E-value=6.9e-19  Score=156.16  Aligned_cols=165  Identities=19%  Similarity=0.225  Sum_probs=150.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHH
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE   89 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~   89 (438)
                      .++..+...++|+++++...+.++..|         .....+..+|.+| ..|++++|+..+.+++...|....+  +..
T Consensus        10 ~lG~~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~   78 (184)
T 3vtx_A           10 DIGDKKRTKGDFDGAIRAYKKVLKADP---------NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA--YYI   78 (184)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH--HHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHH--HHH
Confidence            567888899999999999999998765         1223455567777 8999999999999999999998888  669


Q ss_pred             HHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Q 013696           90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK  168 (438)
Q Consensus        90 ~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~  168 (438)
                      +|..+...++++.|+..+.+++.++|. ..++..+|.+|..+|++++|+.+|+++++++|+++.+|+++|.+|..+|+++
T Consensus        79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~  158 (184)
T 3vtx_A           79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD  158 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence            999999999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHH
Q 013696          169 ESIEDSEFALRLEPQNQE  186 (438)
Q Consensus       169 eA~~~~~~al~l~P~~~~  186 (438)
                      +|+.+|+++++++|+++.
T Consensus       159 ~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          159 EAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHhCCccCHH
Confidence            999999999999997643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.79  E-value=1.3e-18  Score=159.88  Aligned_cols=151  Identities=21%  Similarity=0.198  Sum_probs=139.5

Q ss_pred             CCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh---
Q 013696           56 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL---  130 (438)
Q Consensus        56 ~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l---  130 (438)
                      |..| ..|++++|+..|++++..+|+++.+  +..+|.++...|++++|+.+|+++++++|+ +.+++++|.+|..+   
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a--~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~   89 (217)
T 2pl2_A           12 GVQLYALGRYDAALTLFERALKENPQDPEA--LYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQ   89 (217)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTSSSCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh
Confidence            4444 7899999999999999999999998  779999999999999999999999999999 99999999999999   


Q ss_pred             --------cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHH
Q 013696          131 --------RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLA  192 (438)
Q Consensus       131 --------~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~  192 (438)
                              |++++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|+++++++ +++.+          .+++.
T Consensus        90 ~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~  168 (217)
T 2pl2_A           90 AEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLD  168 (217)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHH
T ss_pred             hhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHH
Confidence                    999999999999999999999999999999999999999999999999999 88776          45677


Q ss_pred             HHHHHHHHHHhhchhhh
Q 013696          193 EVKSLYEKEVFQKASKT  209 (438)
Q Consensus       193 ~a~~~~~ka~~~~~~~~  209 (438)
                      +|...|++++...+...
T Consensus       169 ~A~~~~~~al~~~P~~~  185 (217)
T 2pl2_A          169 EALAQYAKALEQAPKDL  185 (217)
T ss_dssp             HHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHhCCCCh
Confidence            88888888888776544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.76  E-value=4.4e-18  Score=148.09  Aligned_cols=115  Identities=12%  Similarity=0.057  Sum_probs=109.8

Q ss_pred             HHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 013696           69 SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD  147 (438)
Q Consensus        69 ~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~  147 (438)
                      ..+.+++.++|++..+  ++.+|.+++..|+|++|+.+|++++.++|. +.+|+++|.||..+|+|++|+.+|++++.++
T Consensus        23 ~~l~~al~l~p~~~~~--~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDD--IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG  100 (151)
T ss_dssp             CCTGGGCCSCHHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHhCCCHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            3467888899988888  779999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696          148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       148 p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~  185 (438)
                      |+++.+|+++|.+|..+|++++|+.+|++++++.|+.+
T Consensus       101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999999865

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.76  E-value=7.5e-18  Score=168.80  Aligned_cols=135  Identities=14%  Similarity=0.076  Sum_probs=128.0

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhcc-HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKK-FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~-y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~  137 (438)
                      ..|++++|+..|+++|.++|++..+  |+.+|.++...|+ |++|+.+|++++.++|+ ..+|+++|.+|..+|++++|+
T Consensus       109 ~~g~~~~Al~~~~~al~l~P~~~~a--~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl  186 (382)
T 2h6f_A          109 RDERSERAFKLTRDAIELNAANYTV--WHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQEL  186 (382)
T ss_dssp             HTCCCHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             HCCChHHHHHHHHHHHHhCccCHHH--HHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHH
Confidence            5689999999999999999999998  7799999999997 99999999999999999 999999999999999999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  196 (438)
                      .+|+++|.++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..+..+..
T Consensus       187 ~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~  245 (382)
T 2h6f_A          187 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS  245 (382)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998766655443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.75  E-value=5.6e-18  Score=146.52  Aligned_cols=131  Identities=13%  Similarity=0.061  Sum_probs=119.0

Q ss_pred             hHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696           67 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN  145 (438)
Q Consensus        67 Ai~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~  145 (438)
                      +-..|++++.++|++..+  ++.+|..++..|+|++|+.+|.+++.++|. +.+|+++|.+|..+|+|++|+.+|++++.
T Consensus         6 ~~~~~~~al~~~p~~~~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQ--LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHcCCHhhHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            345688999999887777  779999999999999999999999999998 99999999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696          146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (438)
Q Consensus       146 l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (438)
                      ++|+++.+++++|.++..+|++++|+.+|++++.++|+++........+...+.
T Consensus        84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  137 (148)
T 2vgx_A           84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE  137 (148)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998776555555555443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.75  E-value=3.8e-18  Score=156.84  Aligned_cols=171  Identities=12%  Similarity=0.116  Sum_probs=103.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL   90 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~   90 (438)
                      .+..+-..++|++++....+.+...++.        ....+..+|.+| ..|++++|+..|.+++..+|++..+  +..+
T Consensus        13 ~g~~~~~~~~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~l   82 (228)
T 4i17_A           13 EGNDALNAKNYAVAFEKYSEYLKLTNNQ--------DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANA--YIGK   82 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTTTC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHH--HHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHhccCCC--------CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHH--HHHH
Confidence            3444455566666666666666544300        011122244444 6666666666666666666665555  5566


Q ss_pred             HHHHHHhccHHHHHHHHHHHhccCCC-H-------HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc--cHHHHHHHHHH
Q 013696           91 GNECFKQKKFKEAIDCYSRSIALSPT-A-------VAYANRAMAYLKLRRFQEAEDDCTEALNLDDR--YIKAYSRRATA  160 (438)
Q Consensus        91 g~~~~~~g~y~~Ai~~y~~al~~~p~-~-------~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~--~~~a~~~lg~a  160 (438)
                      |.+|...|+|++|+.+|.++++++|+ +       .+|.++|.++..+|++++|+.+|++++.++|+  ++.+|+++|.+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  162 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL  162 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence            66666666666666666666666665 4       45666666666666666666666666666666  66666666666


Q ss_pred             HHHcCCH---------------------------HHHHHHHHHHHhhCCCCHHHHHHHH
Q 013696          161 RKELGKL---------------------------KESIEDSEFALRLEPQNQEIKKQLA  192 (438)
Q Consensus       161 ~~~lg~~---------------------------~eA~~~~~~al~l~P~~~~~~~~l~  192 (438)
                      |..+|+.                           ++|+.+|+++++++|++..+...+.
T Consensus       163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  221 (228)
T 4i17_A          163 FYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD  221 (228)
T ss_dssp             HHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            6666665                           5666666666666666655544443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.75  E-value=1.7e-17  Score=152.53  Aligned_cols=134  Identities=17%  Similarity=0.153  Sum_probs=123.5

Q ss_pred             CCCCcC-cCCCccchHHHHHhhhcCCC-CChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh
Q 013696           54 PSPSGN-SYSRNYDPVSHISSSLMNEE-STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  130 (438)
Q Consensus        54 ~~~~~y-~~g~~~eAi~~~~~al~~~p-~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l  130 (438)
                      ..|..| ..|++++|+..|.+++.++| .+..+  ++.+|.+++..|+|++|+.+|.+++.++|. ..+|.++|.+|..+
T Consensus        12 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   89 (228)
T 4i17_A           12 NEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVT--AYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDM   89 (228)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhccCCCCcHH--HHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHc
Confidence            344455 88999999999999999998 77766  668999999999999999999999999999 99999999999999


Q ss_pred             cCHHHHHHHHHHHhhcCCccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHH
Q 013696          131 RRFQEAEDDCTEALNLDDRYI-------KAYSRRATARKELGKLKESIEDSEFALRLEPQ--NQEIKK  189 (438)
Q Consensus       131 ~~~~eA~~~~~~al~l~p~~~-------~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~--~~~~~~  189 (438)
                      |++++|+..|++++.++|+++       .+|+.+|.++..+|++++|+..|+++++++|+  +..++.
T Consensus        90 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  157 (228)
T 4i17_A           90 KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALY  157 (228)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHH
Confidence            999999999999999999998       67999999999999999999999999999999  766643

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.74  E-value=6.2e-18  Score=147.19  Aligned_cols=117  Identities=21%  Similarity=0.175  Sum_probs=108.0

Q ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc---
Q 013696           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------AVAYANRAMAYLKLRRFQEAEDDCTEALNL---  146 (438)
Q Consensus        83 ~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------------~~~~~~la~~~~~l~~~~eA~~~~~~al~l---  146 (438)
                      .+..++..|+.+++.|+|++|+.+|+++|+++|+             +.+|.|+|.|+..+|+|++|+.+|++||.+   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4556889999999999999999999999999987             239999999999999999999999999999   


Q ss_pred             ----CCccHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696          147 ----DDRYIKAY----SRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (438)
Q Consensus       147 ----~p~~~~a~----~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (438)
                          +|+++++|    +++|.++..+|++++|+.+|++++.++|++..+...+..+.....
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~  150 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI  150 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence                99999999    999999999999999999999999999999888777777766554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.73  E-value=3.3e-18  Score=171.42  Aligned_cols=174  Identities=9%  Similarity=0.057  Sum_probs=151.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCC-ccchHHHHHhhhcCCCCChhHHHHHH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSR-NYDPVSHISSSLMNEESTPDATSEKE   89 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~-~~eAi~~~~~al~~~p~~~~a~~~~~   89 (438)
                      ++..+...+.+++++....+.+...+         .....+...|.+| .+|+ +++|+..|++++.++|++..+  |+.
T Consensus       103 lg~~~~~~g~~~~Al~~~~~al~l~P---------~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a--~~~  171 (382)
T 2h6f_A          103 FRAVLQRDERSERAFKLTRDAIELNA---------ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV--WHH  171 (382)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH--HHH
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHhCc---------cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH--HHH
Confidence            45566666779999999999997765         1222344455566 7886 999999999999999999988  779


Q ss_pred             HHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCH
Q 013696           90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE-LGKL  167 (438)
Q Consensus        90 ~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~-lg~~  167 (438)
                      +|.++...|+|++|+.+|+++|+++|+ ..+|+++|.++..+|++++|+.+|+++|.++|++..+|+++|.++.. .|.+
T Consensus       172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~  251 (382)
T 2h6f_A          172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN  251 (382)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcc
Confidence            999999999999999999999999999 99999999999999999999999999999999999999999999999 5555


Q ss_pred             HHH-----HHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696          168 KES-----IEDSEFALRLEPQNQEIKKQLAEVKS  196 (438)
Q Consensus       168 ~eA-----~~~~~~al~l~P~~~~~~~~l~~a~~  196 (438)
                      ++|     +.+|++++.++|++..++..+..++.
T Consensus       252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~  285 (382)
T 2h6f_A          252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ  285 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            888     59999999999999988776665443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.72  E-value=5.6e-18  Score=182.69  Aligned_cols=164  Identities=16%  Similarity=0.185  Sum_probs=150.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHH
Q 013696           10 LDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEK   88 (438)
Q Consensus        10 ~~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~   88 (438)
                      ..++..+.++++|++++..+.+.++..+         .....+..+|..| .+|++++|+..|+++++++|++..+  ++
T Consensus        13 ~nLG~~~~~~G~~~eAi~~~~kAl~l~P---------~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a--~~   81 (723)
T 4gyw_A           13 NNLANIKREQGNIEEAVRLYRKALEVFP---------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA--YS   81 (723)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCS---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HH
Confidence            4578889999999999999999998765         1223455677777 8999999999999999999999988  77


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Q 013696           89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL  167 (438)
Q Consensus        89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~  167 (438)
                      ++|++|...|++++|+.+|+++++++|+ +.+|+++|.+|..+|++++|+.+|++|++++|+++.+|+++|.++..+|++
T Consensus        82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~  161 (723)
T 4gyw_A           82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW  161 (723)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence            9999999999999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCC
Q 013696          168 KESIEDSEFALRLEPQN  184 (438)
Q Consensus       168 ~eA~~~~~~al~l~P~~  184 (438)
                      ++|++.|++++++.|+.
T Consensus       162 ~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          162 TDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhChhH
Confidence            99999999999987654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.72  E-value=6.4e-17  Score=136.03  Aligned_cols=108  Identities=30%  Similarity=0.448  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc-------HHHHH
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-------IKAYS  155 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~-------~~a~~  155 (438)
                      +.+++++|+.+++.|+|++|+.+|+++|+++|+ +.+|.++|.||..+|+|++|+.+|.+++.++|++       ..+|+
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            455889999999999999999999999999999 9999999999999999999999999999998865       46899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013696          156 RRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA  192 (438)
Q Consensus       156 ~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  192 (438)
                      ++|.++..+|++++|+.+|++++.+.|+ ++....+.
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence            9999999999999999999999999985 55544443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.72  E-value=8.4e-17  Score=140.27  Aligned_cols=118  Identities=32%  Similarity=0.439  Sum_probs=107.6

Q ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc------------------CCC-HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 013696           82 PDATSEKELGNECFKQKKFKEAIDCYSRSIAL------------------SPT-AVAYANRAMAYLKLRRFQEAEDDCTE  142 (438)
Q Consensus        82 ~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~------------------~p~-~~~~~~la~~~~~l~~~~eA~~~~~~  142 (438)
                      ..+..++.+|+.+++.|+|++|+.+|.+++.+                  +|. ..+|+++|.||+.+|+|++|+.+|++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            34566899999999999999999999999999                  666 78999999999999999999999999


Q ss_pred             HhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHH
Q 013696          143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ-EIKKQLAEVKSLYE  199 (438)
Q Consensus       143 al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~-~~~~~l~~a~~~~~  199 (438)
                      ++.++|+++.+|+++|.+|..+|+|++|+.+|++++.++|+++ .+...+..+.....
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~  146 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA  146 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998 56666666665443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.72  E-value=3.7e-17  Score=139.68  Aligned_cols=129  Identities=15%  Similarity=0.081  Sum_probs=115.5

Q ss_pred             HHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 013696           69 SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD  147 (438)
Q Consensus        69 ~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~  147 (438)
                      ..|.+++.++|++..+  ++.+|..++..|+|++|+.+|.+++.++|. +.+|+++|.+|..+|+|++|+.+|++++.++
T Consensus         5 ~~l~~al~~~p~~~~~--~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQ--LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             ----CCTTCCHHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHcCCHHHHHH--HHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            4678888889887777  779999999999999999999999999998 9999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696          148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (438)
Q Consensus       148 p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (438)
                      |+++.+++.+|.++..+|++++|+.+|++++.++|+++........+...+.
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  134 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE  134 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998877665566655544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.71  E-value=1.8e-16  Score=131.91  Aligned_cols=113  Identities=29%  Similarity=0.476  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~  162 (438)
                      +..++.+|..++..|+|++|+.+|.+++.++|. +.+|+++|.||..+|+|++|+.+|++++.++|+++.+|+++|.++.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            344889999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHH
Q 013696          163 ELGKLKESIEDSEFALRLE------PQNQEIKKQLAEVKS  196 (438)
Q Consensus       163 ~lg~~~eA~~~~~~al~l~------P~~~~~~~~l~~a~~  196 (438)
                      .+|++++|+.+|++++.++      |.+..++..+..+..
T Consensus        84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            9999999999999999999      999888877776654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.70  E-value=7.3e-17  Score=159.97  Aligned_cols=186  Identities=17%  Similarity=0.145  Sum_probs=118.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHH
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE   89 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~   89 (438)
                      .+...+...++|++++....+.+...+..         ......+|..| ..|++++|+..|.+++..+|++..+  +..
T Consensus       106 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~  174 (388)
T 1w3b_A          106 NLAAALVAAGDMEGAVQAYVSALQYNPDL---------YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA--WSN  174 (388)
T ss_dssp             HHHHHHHHHSCSSHHHHHHHHHHHHCTTC---------THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHH--HHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH--HHH
Confidence            34555566667777777666666554311         11222344444 5566777777777777666666555  556


Q ss_pred             HHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Q 013696           90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK  168 (438)
Q Consensus        90 ~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~  168 (438)
                      +|.++...|++++|+.+|++++.++|+ ..+|.++|.++...|++++|+..|.+++.++|+++.+++.+|.++...|+++
T Consensus       175 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  254 (388)
T 1w3b_A          175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID  254 (388)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHH
Confidence            677777777777777777777777666 6666667777777777777777777777777766666667777777777777


Q ss_pred             HHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhchh
Q 013696          169 ESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKAS  207 (438)
Q Consensus       169 eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~~  207 (438)
                      +|+..|++++.++|+++.+          .+++.+|...|.+++...+.
T Consensus       255 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  303 (388)
T 1w3b_A          255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT  303 (388)
T ss_dssp             HHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence            7777777777766666554          23455666666666655443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.70  E-value=7.2e-17  Score=149.24  Aligned_cols=186  Identities=16%  Similarity=0.203  Sum_probs=157.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCCh-----h
Q 013696           10 LDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP-----D   83 (438)
Q Consensus        10 ~~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~-----~   83 (438)
                      -.++..+-..++|++++....+.+... ..         ...+..+|.+| ..|++++|+..|.+++...|...     .
T Consensus         9 ~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   78 (258)
T 3uq3_A            9 KAEGNKFYKARQFDEAIEHYNKAWELH-KD---------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI   78 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-CC---------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhh-cc---------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHH
Confidence            345667777889999999888887654 11         12344456666 88999999999999999887652     0


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhc--------------------------cCCC-HHHHHHHHHHHHHhcCHHHH
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIA--------------------------LSPT-AVAYANRAMAYLKLRRFQEA  136 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~--------------------------~~p~-~~~~~~la~~~~~l~~~~eA  136 (438)
                      +..+..+|.++...|++++|+.+|.+++.                          .+|. +.++.++|.++...|++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            34478999999999999999999999999                          5666 78899999999999999999


Q ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhc
Q 013696          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       137 ~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~  205 (438)
                      +..|++++.++|.++.+++.+|.++..+|++++|+.+|++++.++|++..+          .+++.+|...|.+++.+.
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999877          355667777788777766

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.69  E-value=1.2e-16  Score=158.46  Aligned_cols=187  Identities=24%  Similarity=0.261  Sum_probs=128.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHH
Q 013696           10 LDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEK   88 (438)
Q Consensus        10 ~~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~   88 (438)
                      ..+...+..+++|++++....+.+...+         .....+..+|..| ..|++++|+..|++++..+|++..+  +.
T Consensus       139 ~~l~~~~~~~g~~~~A~~~~~~al~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~  207 (388)
T 1w3b_A          139 SDLGNLLKALGRLEEAKACYLKAIETQP---------NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA--YI  207 (388)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH--HH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH--HH
Confidence            3456677777888888887777776543         1112233445555 6677777777777777777776666  55


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Q 013696           89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL  167 (438)
Q Consensus        89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~  167 (438)
                      .+|.++...|++++|+..|.+++.++|+ +.++.++|.+|...|++++|+..|++++.++|+++.+|+.+|.++...|++
T Consensus       208 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  287 (388)
T 1w3b_A          208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV  287 (388)
T ss_dssp             HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Confidence            7777777777777777777777777776 677777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHhhCCCCHHHH----------HHHHHHHHHHHHHHhhchh
Q 013696          168 KESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKAS  207 (438)
Q Consensus       168 ~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~ka~~~~~~  207 (438)
                      ++|+..|++++.++|.+..++          +++.+|...|++++...+.
T Consensus       288 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  337 (388)
T 1w3b_A          288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE  337 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            777777777777777776552          3455666666666665543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.69  E-value=6.7e-17  Score=166.36  Aligned_cols=169  Identities=15%  Similarity=0.074  Sum_probs=124.1

Q ss_pred             hHHHH-HHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHH
Q 013696           18 DLQDW-DLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECF   95 (438)
Q Consensus        18 ~l~~w-e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~   95 (438)
                      .+++| ++++....+.++..+         .....+..+|.+| ..|++++|+.+|++++.++|+ ..+  +..+|.+|.
T Consensus       114 ~~g~~~~~A~~~~~~al~~~p---------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~--~~~lg~~~~  181 (474)
T 4abn_A          114 VTPDYSPEAEVLLSKAVKLEP---------ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVS--LQNLSMVLR  181 (474)
T ss_dssp             SSSSCCHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHH--HHHHHHHHT
T ss_pred             hccccHHHHHHHHHHHHhhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHH--HHHHHHHHH
Confidence            34456 666666666665543         1122344455555 677888888888888888776 333  668888888


Q ss_pred             Hh---------ccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh--------cCHHHHHHHHHHHhhcCC---ccHHHH
Q 013696           96 KQ---------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL--------RRFQEAEDDCTEALNLDD---RYIKAY  154 (438)
Q Consensus        96 ~~---------g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l--------~~~~eA~~~~~~al~l~p---~~~~a~  154 (438)
                      ..         |+|++|+.+|.++++++|+ +.+|+++|.+|..+        |++++|+.+|++++.++|   +++.+|
T Consensus       182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  261 (474)
T 4abn_A          182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH  261 (474)
T ss_dssp             TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHH
T ss_pred             HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHH
Confidence            88         8888888888888888887 77888888888888        888888888888888888   788888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013696          155 SRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (438)
Q Consensus       155 ~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (438)
                      +++|.+|..+|++++|+.+|+++++++|++..++..+..+...+
T Consensus       262 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l  305 (474)
T 4abn_A          262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL  305 (474)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888877765555554433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.69  E-value=6.6e-17  Score=166.39  Aligned_cols=156  Identities=13%  Similarity=0.140  Sum_probs=143.7

Q ss_pred             CCCCCCcC-cCCCc-cchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 013696           52 KKPSPSGN-SYSRN-YDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK  129 (438)
Q Consensus        52 ~~~~~~~y-~~g~~-~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~  129 (438)
                      +...|..| ..|++ ++|+.+|++++.++|++..+  ++.+|.+|+..|+|++|+.+|.++++++|+..++.++|.+|..
T Consensus       105 ~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a--~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~  182 (474)
T 4abn_A          105 LMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA--WNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQ  182 (474)
T ss_dssp             HHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            34455555 88999 99999999999999999888  7799999999999999999999999999999999999999999


Q ss_pred             h---------cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCC---CCHHH--
Q 013696          130 L---------RRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL--------GKLKESIEDSEFALRLEP---QNQEI--  187 (438)
Q Consensus       130 l---------~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l--------g~~~eA~~~~~~al~l~P---~~~~~--  187 (438)
                      +         |++++|+..|++++.++|+++.+|+++|.+|..+        |++++|+.+|+++++++|   .++.+  
T Consensus       183 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  262 (474)
T 4abn_A          183 LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHL  262 (474)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHH
T ss_pred             hccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHH
Confidence            9         9999999999999999999999999999999999        999999999999999999   88876  


Q ss_pred             --------HHHHHHHHHHHHHHHhhchhhh
Q 013696          188 --------KKQLAEVKSLYEKEVFQKASKT  209 (438)
Q Consensus       188 --------~~~l~~a~~~~~ka~~~~~~~~  209 (438)
                              .+++.+|...|.+++.+.+...
T Consensus       263 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  292 (474)
T 4abn_A          263 NRATLHKYEESYGEALEGFSQAAALDPAWP  292 (474)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence                    4667889999999988876654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.68  E-value=2.1e-16  Score=155.20  Aligned_cols=184  Identities=11%  Similarity=0.036  Sum_probs=125.5

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHH
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE   89 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~   89 (438)
                      .+...+...++|++++....+.+...+.         ....+..+|..| ..|++++|+..|++++.++|++..+  +..
T Consensus        70 ~~~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~  138 (365)
T 4eqf_A           70 EEGLKRLKEGDLPVTILFMEAAILQDPG---------DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKA--LMA  138 (365)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH--HHH
Confidence            4456666677888888888887766541         122344555566 7788888888888888888887776  668


Q ss_pred             HHHHHHHhccHHHHHHHHHHHhccCCC-----------------------------------------------HHHHHH
Q 013696           90 LGNECFKQKKFKEAIDCYSRSIALSPT-----------------------------------------------AVAYAN  122 (438)
Q Consensus        90 ~g~~~~~~g~y~~Ai~~y~~al~~~p~-----------------------------------------------~~~~~~  122 (438)
                      +|.+|...|+|++|+.+|.+++.++|.                                               +.++.+
T Consensus       139 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  218 (365)
T 4eqf_A          139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG  218 (365)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred             HHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence            888888888888888777777776654                                               345666


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHH
Q 013696          123 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLA  192 (438)
Q Consensus       123 la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~  192 (438)
                      +|.+|..+|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|++++.++|++..+          .+++.
T Consensus       219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence            66667677777777777777777777666677777777777777777777777777777666555          23334


Q ss_pred             HHHHHHHHHHhhc
Q 013696          193 EVKSLYEKEVFQK  205 (438)
Q Consensus       193 ~a~~~~~ka~~~~  205 (438)
                      +|...|.+++.+.
T Consensus       299 ~A~~~~~~al~~~  311 (365)
T 4eqf_A          299 EAVSNFLTALSLQ  311 (365)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC
Confidence            5555555555443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.68  E-value=2.4e-16  Score=143.69  Aligned_cols=147  Identities=12%  Similarity=0.028  Sum_probs=122.2

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHH----------------HHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKE----------------LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN  122 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~----------------~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~  122 (438)
                      ..|++++|+..|++++..+|+++.+  ++.                +|.+|...|+|++|+.+|.++++++|+ +.++++
T Consensus        16 ~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   93 (208)
T 3urz_A           16 EAGQNGQAVSYFRQTIALNIDRTEM--YYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEA   93 (208)
T ss_dssp             HTTCHHHHHHHHHHHHHHCHHHHHH--HHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCChHH--HHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            7799999999999999999998887  557                999999999999999999999999999 999999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHH---------HHHHH
Q 013696          123 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK--LKESIEDSEFALRLEPQNQE---------IKKQL  191 (438)
Q Consensus       123 la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~--~~eA~~~~~~al~l~P~~~~---------~~~~l  191 (438)
                      +|.+|..+|++++|+.+|++++.++|+++.+|+++|.+|...|+  ...+...|.+++...|....         ..+++
T Consensus        94 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~  173 (208)
T 3urz_A           94 CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRY  173 (208)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCH
Confidence            99999999999999999999999999999999999999877654  34566667666544332211         13456


Q ss_pred             HHHHHHHHHHHhhchhh
Q 013696          192 AEVKSLYEKEVFQKASK  208 (438)
Q Consensus       192 ~~a~~~~~ka~~~~~~~  208 (438)
                      .+|...|++++.+.+..
T Consensus       174 ~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          174 EKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHHTTTSCCH
T ss_pred             HHHHHHHHHHHHhCCCH
Confidence            77888888888777654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.67  E-value=1.2e-16  Score=146.71  Aligned_cols=182  Identities=13%  Similarity=0.095  Sum_probs=111.3

Q ss_pred             HHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHH
Q 013696           15 FLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNE   93 (438)
Q Consensus        15 ~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~   93 (438)
                      .+...++|++++....+.+...+         .....+..+|..| ..|++++|+..|.+++..+|.+..+  +..+|.+
T Consensus        32 ~~~~~~~~~~A~~~~~~~l~~~~---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~la~~  100 (243)
T 2q7f_A           32 RGSEFGDYEKAAEAFTKAIEENK---------EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATA--YYGAGNV  100 (243)
T ss_dssp             ----------CCTTHHHHHTTCT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHH
T ss_pred             HHHHhhCHHHHHHHHHHHHHhCc---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHH--HHHHHHH
Confidence            33444556666555555554332         1111223334444 6677777777777777777666555  5577777


Q ss_pred             HHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH
Q 013696           94 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE  172 (438)
Q Consensus        94 ~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~  172 (438)
                      +...|++++|+.+|.++++.+|. ..++.++|.+|...|++++|+..+.+++.++|+++.+++.+|.++...|++++|+.
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence            77777777777777777777776 66777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhhCCCCHHHH----------HHHHHHHHHHHHHHhhchh
Q 013696          173 DSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKAS  207 (438)
Q Consensus       173 ~~~~al~l~P~~~~~~----------~~l~~a~~~~~ka~~~~~~  207 (438)
                      .|++++.++|.+..++          +++.+|...|.+++...+.
T Consensus       181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  225 (243)
T 2q7f_A          181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD  225 (243)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence            7777777777766553          2334555555555555433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.67  E-value=1.5e-16  Score=156.30  Aligned_cols=136  Identities=26%  Similarity=0.310  Sum_probs=124.8

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-H---------------HHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A---------------VAYANR  123 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~---------------~~~~~l  123 (438)
                      .++++++|+..|..++...|....+  ++.+|++|+..|+|++|+.+|.+++.++|. .               .+|+++
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~--~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl  202 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTI--VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL  202 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence            5678999999999999888776666  779999999999999999999999999998 3               889999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013696          124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL  197 (438)
Q Consensus       124 a~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~  197 (438)
                      |.||+.+|+|++|+.+|++++.++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..+..+...
T Consensus       203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  276 (336)
T 1p5q_A          203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  276 (336)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999886666555543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.67  E-value=4.5e-16  Score=144.30  Aligned_cols=184  Identities=11%  Similarity=0.008  Sum_probs=148.4

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHH
Q 013696           13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELG   91 (438)
Q Consensus        13 ~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g   91 (438)
                      ...+...++|++++....+.+...+.         ....+..+|..| ..|++++|+..|.+++..+|.+..+  +..+|
T Consensus        44 a~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~la  112 (252)
T 2ho1_A           44 GLGYLQRGNTEQAKVPLRKALEIDPS---------SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARV--LNNYG  112 (252)
T ss_dssp             HHHHHHTTCTGGGHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCC---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHH--HHHHH
Confidence            34455566777777777777765431         112333445555 7899999999999999999888777  67999


Q ss_pred             HHHHHhccHHHHHHHHHHHhc--cCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Q 013696           92 NECFKQKKFKEAIDCYSRSIA--LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK  168 (438)
Q Consensus        92 ~~~~~~g~y~~Ai~~y~~al~--~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~  168 (438)
                      .+++..|++++|+.+|.+++.  ..|. ..++.++|.+|...|++++|+..+.+++.++|.++.+++.+|.++..+|+++
T Consensus       113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  192 (252)
T 2ho1_A          113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV  192 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999  7777 8889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhchh
Q 013696          169 ESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKAS  207 (438)
Q Consensus       169 eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~~  207 (438)
                      +|+..|++++.+.|.+..+          .+++.+|...+.+++...+.
T Consensus       193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~  241 (252)
T 2ho1_A          193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG  241 (252)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence            9999999999999988766          34455666666666665543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.67  E-value=2.1e-16  Score=146.05  Aligned_cols=179  Identities=19%  Similarity=0.298  Sum_probs=147.9

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhc--------------
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLM--------------   76 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~--------------   76 (438)
                      +...+..+++|++++....+.+...+....  ..+.....+..+|..| ..|++++|+..|.+++.              
T Consensus        44 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  121 (258)
T 3uq3_A           44 RAAAEYEKGEYETAISTLNDAVEQGREMRA--DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNA  121 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCccccc--chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHH
Confidence            455666677888888888877765531110  0001123345566666 88999999999999999              


Q ss_pred             ------------CCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013696           77 ------------NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEA  143 (438)
Q Consensus        77 ------------~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~a  143 (438)
                                  .+|....+  +..+|.+++..|+|++|+.+|.+++..+|. +.++.++|.+|..+|++++|+.+|.++
T Consensus       122 ~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  199 (258)
T 3uq3_A          122 EKELKKAEAEAYVNPEKAEE--ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA  199 (258)
T ss_dssp             HHHHHHHHHHHHCCHHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcchHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence                        44444444  779999999999999999999999999999 999999999999999999999999999


Q ss_pred             hhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHH
Q 013696          144 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE------PQNQEIKKQLAEV  194 (438)
Q Consensus       144 l~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~------P~~~~~~~~l~~a  194 (438)
                      +.++|+++.+|+.+|.++..+|++++|+.+|+++++++      |.+..++..+.++
T Consensus       200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            99999999999999999999999999999999999999      9888877766654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.66  E-value=1e-15  Score=143.72  Aligned_cols=152  Identities=14%  Similarity=0.097  Sum_probs=132.9

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCCC---hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHH
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEEST---PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMA  126 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~---~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~  126 (438)
                      .|..| ..|++++|+..|++++...|.+   ..+  ++.+|.+|+..|+|++|+..|.+++.++|+    +.+++++|.|
T Consensus        21 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a--~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~   98 (261)
T 3qky_A           21 RAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADA--QFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMC   98 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHH--HHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Confidence            34444 8899999999999999999988   455  789999999999999999999999999885    7889999999


Q ss_pred             HHH--------hcCHHHHHHHHHHHhhcCCccHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696          127 YLK--------LRRFQEAEDDCTEALNLDDRYIKAY-----------------SRRATARKELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       127 ~~~--------l~~~~eA~~~~~~al~l~p~~~~a~-----------------~~lg~a~~~lg~~~eA~~~~~~al~l~  181 (438)
                      |..        +|++++|+..|++++..+|++..++                 +.+|.+|..+|+|++|+..|++++..+
T Consensus        99 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  178 (261)
T 3qky_A           99 YYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY  178 (261)
T ss_dssp             HHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            999        9999999999999999999886655                 899999999999999999999999999


Q ss_pred             CCCH---HH----------H----------HHHHHHHHHHHHHHhhchhh
Q 013696          182 PQNQ---EI----------K----------KQLAEVKSLYEKEVFQKASK  208 (438)
Q Consensus       182 P~~~---~~----------~----------~~l~~a~~~~~ka~~~~~~~  208 (438)
                      |++.   .+          .          +++.+|...|.+++...+..
T Consensus       179 p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  228 (261)
T 3qky_A          179 PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS  228 (261)
T ss_dssp             TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence            9853   33          1          66677888888887776544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.66  E-value=1.7e-15  Score=132.22  Aligned_cols=106  Identities=28%  Similarity=0.446  Sum_probs=101.5

Q ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 013696           82 PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA  160 (438)
Q Consensus        82 ~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a  160 (438)
                      ..+..++.+|.+++..|+|++|+.+|.+++.++|. +.+|+++|.||..+|+|++|+.+|++++.++|+++.+|+++|.+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34555889999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          161 RKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       161 ~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      |..+|++++|+.+|++++.++|++..+
T Consensus        89 ~~~~g~~~~A~~~~~~al~~~p~~~~~  115 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEAEGNGGSD  115 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCchHH
Confidence            999999999999999999999999874

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.66  E-value=3.3e-16  Score=153.72  Aligned_cols=173  Identities=14%  Similarity=0.128  Sum_probs=135.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccc-cccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLV-SSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE   89 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~   89 (438)
                      +...+..++++++++....+.+...+....... ..+.......+|..| ..|++++|+..|++++..+|....+..+..
T Consensus       139 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  218 (365)
T 4eqf_A          139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG  218 (365)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred             HHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence            445555666777777776666654431000000 001112234457777 889999999999999999998333334789


Q ss_pred             HHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Q 013696           90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK  168 (438)
Q Consensus        90 ~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~  168 (438)
                      +|.+|...|++++|+.+|.+++.++|. +.+|.++|.+|..+|++++|+..|++++.++|+++.+|+.+|.++..+|+++
T Consensus       219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence            999999999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCC
Q 013696          169 ESIEDSEFALRLEPQN  184 (438)
Q Consensus       169 eA~~~~~~al~l~P~~  184 (438)
                      +|+.+|++++.++|++
T Consensus       299 ~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          299 EAVSNFLTALSLQRKS  314 (365)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhCccc
Confidence            9999999999999885

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.66  E-value=1.3e-15  Score=134.36  Aligned_cols=127  Identities=17%  Similarity=0.173  Sum_probs=116.7

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHH-HHHhcCH--H
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMA-YLKLRRF--Q  134 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~-~~~l~~~--~  134 (438)
                      +..|++++|+..|.+++..+|.+..+  +..+|.+|+..|+|++|+.+|.+++.++|. +.++.++|.+ |...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~--~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQ--WALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence            38899999999999999999998887  779999999999999999999999999998 9999999999 8899999  9


Q ss_pred             HHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       135 eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      +|+..|.+++.++|+++.+++.+|.++..+|++++|+..|++++.++|++...
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  151 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR  151 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence            99999999999999999999999999999999999999999999999988644

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.66  E-value=5.4e-16  Score=145.65  Aligned_cols=171  Identities=13%  Similarity=0.073  Sum_probs=143.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChh-HHHHHHH
Q 013696           13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD-ATSEKEL   90 (438)
Q Consensus        13 ~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~-a~~~~~~   90 (438)
                      +..+-..++|++++....+.+...+..      +.....+..+|.+| ..|++++|+..|++++...|+++. ..+++.+
T Consensus        22 a~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l   95 (261)
T 3qky_A           22 AMEFYNQGKYDRAIEYFKAVFTYGRTH------EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER   95 (261)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHGGGCSCS------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCC------cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence            444556789999999999988766411      11123345566666 899999999999999999886643 4458899


Q ss_pred             HHHHHH--------hccHHHHHHHHHHHhccCCC-HH---HH--------------HHHHHHHHHhcCHHHHHHHHHHHh
Q 013696           91 GNECFK--------QKKFKEAIDCYSRSIALSPT-AV---AY--------------ANRAMAYLKLRRFQEAEDDCTEAL  144 (438)
Q Consensus        91 g~~~~~--------~g~y~~Ai~~y~~al~~~p~-~~---~~--------------~~la~~~~~l~~~~eA~~~~~~al  144 (438)
                      |.+++.        .|++++|+..|.+++..+|+ ..   ++              +++|.+|..+|+|++|+..|++++
T Consensus        96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  175 (261)
T 3qky_A           96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF  175 (261)
T ss_dssp             HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            999999        99999999999999999997 33   33              899999999999999999999999


Q ss_pred             hcCCc---cHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCHHHHH
Q 013696          145 NLDDR---YIKAYSRRATARKEL----------GKLKESIEDSEFALRLEPQNQEIKK  189 (438)
Q Consensus       145 ~l~p~---~~~a~~~lg~a~~~l----------g~~~eA~~~~~~al~l~P~~~~~~~  189 (438)
                      ...|+   .+.+++.+|.+|..+          |++++|+..|++++...|+++.+..
T Consensus       176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  233 (261)
T 3qky_A          176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT  233 (261)
T ss_dssp             HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred             HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence            99998   578999999999988          9999999999999999999976543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.66  E-value=1e-15  Score=138.45  Aligned_cols=167  Identities=13%  Similarity=0.075  Sum_probs=143.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHH
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE   89 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~   89 (438)
                      .+...+...++|++++....+.+...+.         ....+..+|..| ..|++++|+..|.+++..+|.+..+  +..
T Consensus        13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~   81 (225)
T 2vq2_A           13 QLAMEYMRGQDYRQATASIEDALKSDPK---------NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEI--NNN   81 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhCcc---------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH--HHH
Confidence            3455666678888888888888776541         112334455556 7899999999999999999988777  679


Q ss_pred             HHHHHHHh-ccHHHHHHHHHHHhc--cCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696           90 LGNECFKQ-KKFKEAIDCYSRSIA--LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (438)
Q Consensus        90 ~g~~~~~~-g~y~~Ai~~y~~al~--~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg  165 (438)
                      +|.+++.. |++++|+.+|.+++.  .+|. ..++.++|.++...|++++|+..+.+++..+|.++.+++.+|.++...|
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  161 (225)
T 2vq2_A           82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG  161 (225)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence            99999999 999999999999999  5566 8889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCC-CCHHHH
Q 013696          166 KLKESIEDSEFALRLEP-QNQEIK  188 (438)
Q Consensus       166 ~~~eA~~~~~~al~l~P-~~~~~~  188 (438)
                      ++++|+..|++++.+.| .+...+
T Consensus       162 ~~~~A~~~~~~~~~~~~~~~~~~~  185 (225)
T 2vq2_A          162 QLGDADYYFKKYQSRVEVLQADDL  185 (225)
T ss_dssp             CHHHHHHHHHHHHHHHCSCCHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCHHHH
Confidence            99999999999999999 887764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.65  E-value=7.1e-16  Score=138.93  Aligned_cols=139  Identities=24%  Similarity=0.249  Sum_probs=119.5

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-H----------------HHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A----------------VAYAN  122 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~----------------~~~~~  122 (438)
                      ..|++++|.+.+.......+..  +..++.+|..++..|+|++|+.+|.+++.+.|. +                .++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (198)
T 2fbn_A           16 NLYFQGAKKSIYDYTDEEKVQS--AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN   93 (198)
T ss_dssp             ------CCCSGGGCCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccCchhhCCHHHHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence            6688888888887665544333  444889999999999999999999999999887 5                89999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013696          123 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (438)
Q Consensus       123 la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~k  200 (438)
                      +|.||..+|+|++|+.+|.+++.++|+++.+++++|.++..+|++++|+.+|++++.++|++..++..+..+.....+
T Consensus        94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  171 (198)
T 2fbn_A           94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  171 (198)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998888877776554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.65  E-value=1.9e-15  Score=138.68  Aligned_cols=153  Identities=15%  Similarity=0.165  Sum_probs=124.8

Q ss_pred             cCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHH
Q 013696           51 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL  128 (438)
Q Consensus        51 ~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~  128 (438)
                      .+...|..| ..|++++|+..|++++..+|.+..+  +..+|.+++..|++++|+.+|.+++..+|. ..++.++|.+|.
T Consensus        25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  102 (243)
T 2q7f_A           25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP--YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV  102 (243)
T ss_dssp             -----------------CCTTHHHHHTTCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            345566666 8899999999999999999998877  779999999999999999999999999998 999999999999


Q ss_pred             HhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----------HHHHHHHHHH
Q 013696          129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLY  198 (438)
Q Consensus       129 ~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~  198 (438)
                      .+|++++|+..+.+++.++|.++.+++.+|.++...|++++|+..|++++.+.|.+..++          +++.+|...+
T Consensus       103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  182 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF  182 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998773          3445556666


Q ss_pred             HHHHhhc
Q 013696          199 EKEVFQK  205 (438)
Q Consensus       199 ~ka~~~~  205 (438)
                      .+++...
T Consensus       183 ~~~~~~~  189 (243)
T 2q7f_A          183 AAVTEQD  189 (243)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            6555544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.65  E-value=1.2e-15  Score=149.06  Aligned_cols=184  Identities=10%  Similarity=0.025  Sum_probs=113.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHH
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE   89 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~   89 (438)
                      .+...+-..++|++++....+.+...+.         ....+..+|.+| ..|++++|+..|.+++..+|.+..+  +..
T Consensus        69 ~~~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~  137 (368)
T 1fch_A           69 EEGLRRLQEGDLPNAVLLFEAAVQQDPK---------HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA--LMA  137 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHH--HHH
Confidence            3445555566666666666666654321         111223344444 6667777777777777776666655  456


Q ss_pred             HHHHHHHhccHHHHHHHHHHHhccCCC----------------------------------------------------H
Q 013696           90 LGNECFKQKKFKEAIDCYSRSIALSPT----------------------------------------------------A  117 (438)
Q Consensus        90 ~g~~~~~~g~y~~Ai~~y~~al~~~p~----------------------------------------------------~  117 (438)
                      +|.++...|++++|+.+|.+++.++|.                                                    +
T Consensus       138 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  217 (368)
T 1fch_A          138 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP  217 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccH
Confidence            666666666666666666655555442                                                    3


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------
Q 013696          118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------  187 (438)
Q Consensus       118 ~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------  187 (438)
                      .++.++|.+|...|++++|+..|.+++.++|+++.+|+.+|.++..+|++++|+..|++++.++|++..+          
T Consensus       218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  297 (368)
T 1fch_A          218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN  297 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            4566667777777777777777777777777777777777777777777777777777777777766655          


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 013696          188 KKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       188 ~~~l~~a~~~~~ka~~~~  205 (438)
                      .+++.+|...|.+++...
T Consensus       298 ~g~~~~A~~~~~~al~~~  315 (368)
T 1fch_A          298 LGAHREAVEHFLEALNMQ  315 (368)
T ss_dssp             HTCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhC
Confidence            334445555555555443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.65  E-value=4.1e-15  Score=129.82  Aligned_cols=144  Identities=17%  Similarity=0.210  Sum_probs=131.1

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..|++++|+..|++++...|.+..+  +..+|.+++..|++++|+.+|.+++..+|. ..++.++|.++...|++++|+.
T Consensus        20 ~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~   97 (186)
T 3as5_A           20 KAGRYSQAVMLLEQVYDADAFDVDV--ALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVP   97 (186)
T ss_dssp             HHTCHHHHHHHHTTTCCTTSCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCccChHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence            6789999999999999999988777  779999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----------HHHHHHHHHHHHHHhhc
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~ka~~~~  205 (438)
                      .+.+++..+|.++.+++.+|.++...|++++|+..|++++.+.|.+..++          +++.+|...+.+++...
T Consensus        98 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  174 (186)
T 3as5_A           98 LLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD  174 (186)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999998763          44566666666666554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.64  E-value=2.2e-15  Score=145.81  Aligned_cols=139  Identities=19%  Similarity=0.250  Sum_probs=67.4

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHH----------HHHHHHHHHhccHHHHHHHHHHHhccCCC-H----HHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSE----------KELGNECFKQKKFKEAIDCYSRSIALSPT-A----VAYANRA  124 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~----------~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~----~~~~~la  124 (438)
                      ..|++++|+..|.+++...|++..+..+          ..+|.+++..|++++|+.+|.+++...|. .    .++..+|
T Consensus       200 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la  279 (359)
T 3ieg_A          200 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERIC  279 (359)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            3444444444444444444444433211          12244445555555555555555554444 1    2344455


Q ss_pred             HHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013696          125 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (438)
Q Consensus       125 ~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (438)
                      .+|..+|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|+++++++|++..++..+..+...+
T Consensus       280 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  353 (359)
T 3ieg_A          280 HCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL  353 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555544444444433

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.64  E-value=8.6e-16  Score=147.29  Aligned_cols=185  Identities=12%  Similarity=0.069  Sum_probs=121.9

Q ss_pred             HHHHHHhHH-HHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHH
Q 013696           12 FQGFLNDLQ-DWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE   89 (438)
Q Consensus        12 l~~~~~~l~-~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~   89 (438)
                      +...+...+ .|++++....+.+...+.         ....+..+|..| ..|++++|+..|.+++...|....+  +..
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~  164 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLEKT---------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLP--MLY  164 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTCTT---------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHH--HHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCCc---------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHH--HHH
Confidence            445555556 677777766666655431         111233444455 6677777777777777777766666  446


Q ss_pred             HHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC---------CccHHHHHHHHH
Q 013696           90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD---------DRYIKAYSRRAT  159 (438)
Q Consensus        90 ~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~---------p~~~~a~~~lg~  159 (438)
                      +|.++...|++++|+.+|.+++..+|. +.++.++|.+|...|++++|+..+++++.+.         |.++.+++.+|.
T Consensus       165 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~  244 (330)
T 3hym_B          165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH  244 (330)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence            777777777777777777777777776 6777777777777777777777777777665         555667777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhchh
Q 013696          160 ARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKAS  207 (438)
Q Consensus       160 a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~~  207 (438)
                      ++..+|++++|+.+|++++.++|++..+          .+++.+|...|.+++...+.
T Consensus       245 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (330)
T 3hym_B          245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD  302 (330)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred             HHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence            7777777777777777777777776554          34455666666666555543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.64  E-value=2.6e-16  Score=161.26  Aligned_cols=138  Identities=25%  Similarity=0.325  Sum_probs=122.7

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----------------HHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AVAYANR  123 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----------------~~~~~~l  123 (438)
                      .++++++|+..|..++...|....+  ++.+|+.+++.|+|++|+.+|.++++++|.                ..+|+++
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~--~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl  323 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAI--VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL  323 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHH
Confidence            5678889999999888887766656  889999999999999999999999999887                3889999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696          124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (438)
Q Consensus       124 a~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (438)
                      |.||+++|+|++|+.+|++++.++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..+..+...+.
T Consensus       324 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~  399 (457)
T 1kt0_A          324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK  399 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998887777766554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.64  E-value=4.4e-16  Score=130.79  Aligned_cols=107  Identities=15%  Similarity=0.164  Sum_probs=100.1

Q ss_pred             CCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh
Q 013696           53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  130 (438)
Q Consensus        53 ~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l  130 (438)
                      ...|..| ..|+|++|+..|++++.++|.+..+  +..+|.+|+..|++++|+.+|.++++++|+ +.+|+++|.+|..+
T Consensus        17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~   94 (126)
T 4gco_A           17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAIL--YSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM   94 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence            3445555 8999999999999999999999888  779999999999999999999999999999 99999999999999


Q ss_pred             cCHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 013696          131 RRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (438)
Q Consensus       131 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~  161 (438)
                      |++++|+.+|+++++++|++..++..++.++
T Consensus        95 ~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           95 REWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999999999999999998764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.64  E-value=1.8e-15  Score=145.09  Aligned_cols=180  Identities=10%  Similarity=-0.027  Sum_probs=109.0

Q ss_pred             HHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHH
Q 013696           14 GFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGN   92 (438)
Q Consensus        14 ~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~   92 (438)
                      ..+-..++|++++....+.+...+....         .+...+.++ ..|++++|+..+.+++..+|.+..+  +..+|.
T Consensus        30 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~---------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~   98 (330)
T 3hym_B           30 ERHYYNCDFKMCYKLTSVVMEKDPFHAS---------CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVS--WFAVGC   98 (330)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCTT---------THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH--HHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCChh---------hHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH--HHHHHH
Confidence            3334446777777766666655541111         111122222 5566666666666666666666655  446666


Q ss_pred             HHHHhc-cHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHH
Q 013696           93 ECFKQK-KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES  170 (438)
Q Consensus        93 ~~~~~g-~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA  170 (438)
                      +++..| ++++|+.+|.+++.++|. +.+|.++|.+|...|++++|+..|.+++.++|++..+++.+|.++...|++++|
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA  178 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence            666666 666666666666666666 666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhh
Q 013696          171 IEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQ  204 (438)
Q Consensus       171 ~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~  204 (438)
                      +..|++++.++|.+..+          .+++.+|...+.+++..
T Consensus       179 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  222 (330)
T 3hym_B          179 ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK  222 (330)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            66666666666666544          23445555555555554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.64  E-value=1.9e-15  Score=146.14  Aligned_cols=184  Identities=14%  Similarity=0.058  Sum_probs=154.5

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHH
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE   89 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~   89 (438)
                      .++..+-..++|++++....+.+...+.         ....+..+|.+| ..|++++|+..|++++..+|.+..+  +..
T Consensus         8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~   76 (359)
T 3ieg_A            8 ELGKKLLAAGQLADALSQFHAAVDGDPD---------NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAA--RLQ   76 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH--HHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcc---------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchH--HHH
Confidence            4456666778899999988888876541         122344455566 8899999999999999999998877  779


Q ss_pred             HHHHHHHhccHHHHHHHHHHHhccCC---C-HHHHHHH------------HHHHHHhcCHHHHHHHHHHHhhcCCccHHH
Q 013696           90 LGNECFKQKKFKEAIDCYSRSIALSP---T-AVAYANR------------AMAYLKLRRFQEAEDDCTEALNLDDRYIKA  153 (438)
Q Consensus        90 ~g~~~~~~g~y~~Ai~~y~~al~~~p---~-~~~~~~l------------a~~~~~l~~~~eA~~~~~~al~l~p~~~~a  153 (438)
                      +|.++...|++++|+.+|.+++.++|   . ..++..+            |.++...|++++|+..+.+++..+|.++.+
T Consensus        77 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  156 (359)
T 3ieg_A           77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL  156 (359)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence            99999999999999999999999999   6 6666666            799999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----------HHHHHHHHHHHHHHhhc
Q 013696          154 YSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       154 ~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~ka~~~~  205 (438)
                      +..+|.++..+|++++|+..|++++.++|.+..++          +++.+|...|.+++...
T Consensus       157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  218 (359)
T 3ieg_A          157 RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD  218 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999998874          44555666666655544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.63  E-value=1.4e-16  Score=171.14  Aligned_cols=173  Identities=9%  Similarity=-0.079  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHh
Q 013696           19 LQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ   97 (438)
Q Consensus        19 l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~   97 (438)
                      .+++++++....+.+...- .......+.....+...|..| ..|++++|+..|++++..+|++..+  ++.+|.+|+..
T Consensus       404 ~~~~~~A~~~~~~al~~~~-~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a--~~~lg~~~~~~  480 (681)
T 2pzi_A          404 LSQPVQTLDSLRAARHGAL-DADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRL--VWYRAVAELLT  480 (681)
T ss_dssp             TCCHHHHHHHHHHHHTC--------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHhhhhcc-cccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHH--HHHHHHHHHHc
Confidence            4567777777777762110 000001112222334455556 8899999999999999999999888  77999999999


Q ss_pred             ccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013696           98 KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF  176 (438)
Q Consensus        98 g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~  176 (438)
                      |+|++|+.+|+++++++|+ +.+|+++|.+|..+|+|++ +.+|++++.++|+++.+|+++|.++..+|++++|+.+|++
T Consensus       481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~  559 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDE  559 (681)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999999999999 9999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHH
Q 013696          177 ALRLEPQNQEIKKQLAEVK  195 (438)
Q Consensus       177 al~l~P~~~~~~~~l~~a~  195 (438)
                      +++++|++..++..+..+.
T Consensus       560 al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          560 VPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             SCTTSTTHHHHHHHHHHHT
T ss_pred             hcccCcccHHHHHHHHHHH
Confidence            9999999998877766664

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.63  E-value=1.6e-16  Score=137.52  Aligned_cols=144  Identities=15%  Similarity=0.051  Sum_probs=120.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL   90 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~   90 (438)
                      |+......+++++++......+...+         ........+|..| ..|+|++|+.+|++++.++|+++.+  +..+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p---------~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a--~~~l   71 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPR---------QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA--HRFL   71 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHH---------HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCc---------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHH
Confidence            45556667788888877777664332         2223334567777 8999999999999999999999988  7799


Q ss_pred             HHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHH-HHHHhhcCCccHHHHHHHHHHHHHcCC
Q 013696           91 GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD-CTEALNLDDRYIKAYSRRATARKELGK  166 (438)
Q Consensus        91 g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~-~~~al~l~p~~~~a~~~lg~a~~~lg~  166 (438)
                      |.+|...|++++|+.+|.++++++|+ +.+|+++|.+|..+|++++|... +++|++++|+++.+|..++.++...|+
T Consensus        72 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           72 GLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999999 99999999999999999887765 599999999999999999999988875

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.63  E-value=4.2e-15  Score=139.14  Aligned_cols=146  Identities=11%  Similarity=0.084  Sum_probs=130.1

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQE  135 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~e  135 (438)
                      ..|++++|+..|++++..+|.+..+  +..+|.+++..|+|++|+.+|.+++...++    +.+|.++|.+|..+|++++
T Consensus        15 ~~~~~~~A~~~~~~~l~~~p~~~~~--~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~   92 (272)
T 3u4t_A           15 KNNNYAEAIEVFNKLEAKKYNSPYI--YNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSL   92 (272)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCCCSTT--HHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHH
Confidence            7899999999999999999998888  679999999999999999999999994322    6679999999999999999


Q ss_pred             HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH----------HHHHHHHHHHhhc
Q 013696          136 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA----------EVKSLYEKEVFQK  205 (438)
Q Consensus       136 A~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~----------~a~~~~~ka~~~~  205 (438)
                      |+.+|.+++.++|.++.+|..+|.++..+|++++|+.+|++++.++|.+..++..+.          +|...|.+++...
T Consensus        93 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  172 (272)
T 3u4t_A           93 AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK  172 (272)
T ss_dssp             HHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999988754444          6666777776665


Q ss_pred             hh
Q 013696          206 AS  207 (438)
Q Consensus       206 ~~  207 (438)
                      +.
T Consensus       173 p~  174 (272)
T 3u4t_A          173 PN  174 (272)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.62  E-value=4.1e-15  Score=145.38  Aligned_cols=186  Identities=15%  Similarity=0.147  Sum_probs=146.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCcccc-------ccccccCCCCCCcCcCCCccchHHHHHhhhcCCCCChhH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVS-------SSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTPDA   84 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~y~~g~~~eAi~~~~~al~~~p~~~~a   84 (438)
                      +...+..++++++++....+.+...+........       .........++..+..|++++|+..|.+++..+|....+
T Consensus       138 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  217 (368)
T 1fch_A          138 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP  217 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccH
Confidence            3445555667777777777766554311110000       000001123555567899999999999999999984334


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 013696           85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE  163 (438)
Q Consensus        85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~  163 (438)
                      ..+..+|.++...|++++|+.+|.+++.++|. +.++.++|.+|..+|++++|+..|++++.++|+++.+++.+|.++..
T Consensus       218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  297 (368)
T 1fch_A          218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN  297 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            44789999999999999999999999999998 99999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCC-----------HHHHHHHHHHHHH
Q 013696          164 LGKLKESIEDSEFALRLEPQN-----------QEIKKQLAEVKSL  197 (438)
Q Consensus       164 lg~~~eA~~~~~~al~l~P~~-----------~~~~~~l~~a~~~  197 (438)
                      +|++++|+.+|++++.+.|++           ..++..+..+...
T Consensus       298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  342 (368)
T 1fch_A          298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM  342 (368)
T ss_dssp             HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH
Confidence            999999999999999999988           6666666555443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.62  E-value=6e-15  Score=138.08  Aligned_cols=174  Identities=11%  Similarity=0.020  Sum_probs=145.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChh--HHHH
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD--ATSE   87 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~--a~~~   87 (438)
                      .+...+-..++|++++....+.+...+.         ....+..+|.+| ..|++++|+..|.+++. .|.++.  +..+
T Consensus         8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~   77 (272)
T 3u4t_A            8 RYADFLFKNNNYAEAIEVFNKLEAKKYN---------SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADF   77 (272)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHTTCC---------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHH
Confidence            3456666778999999999888876541         122344455566 89999999999999999 433332  3447


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Q 013696           88 KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK  166 (438)
Q Consensus        88 ~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~  166 (438)
                      ..+|.++...|++++|+.+|.+++.++|. +.++.++|.+|..+|++++|+.+|++++.++|.++.+|+.+|......++
T Consensus        78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~  157 (272)
T 3u4t_A           78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKE  157 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999 99999999999999999999999999999999999999999955555679


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013696          167 LKESIEDSEFALRLEPQNQEIKKQLAEV  194 (438)
Q Consensus       167 ~~eA~~~~~~al~l~P~~~~~~~~l~~a  194 (438)
                      +++|+..|++++.++|++..++..+..+
T Consensus       158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~  185 (272)
T 3u4t_A          158 YVKADSSFVKVLELKPNIYIGYLWRARA  185 (272)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            9999999999999999998775554433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.62  E-value=1e-14  Score=136.30  Aligned_cols=144  Identities=17%  Similarity=0.085  Sum_probs=126.7

Q ss_pred             cCCCccchHHHHHhhhcCCCCCh--hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  136 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~--~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA  136 (438)
                      ..|++++|+..|.+++...+...  .+..+..+|.+++..|++++|+.+|.+++.++|. +.+|.++|.+|...|++++|
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence            67899999999999999754322  3455889999999999999999999999999998 99999999999999999999


Q ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---------HHHHHHHHHHHHHHHh
Q 013696          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI---------KKQLAEVKSLYEKEVF  203 (438)
Q Consensus       137 ~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~---------~~~l~~a~~~~~ka~~  203 (438)
                      +.+|.+++.++|.++.+++.+|.++..+|++++|+..|++++.++|++...         .+++.+|...+.+++.
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  172 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999854         2444555555554443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.62  E-value=4.5e-15  Score=155.64  Aligned_cols=145  Identities=14%  Similarity=0.044  Sum_probs=105.0

Q ss_pred             CCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHH
Q 013696           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD  139 (438)
Q Consensus        61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~  139 (438)
                      .|++++|+..|++++..+|++..+  +..+|.+++..|+|++|+.+|+++++++|+ ..++.++|.+|..+|++++|+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~--~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVA--WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            367888888888888888887777  668888888888888888888888888888 88888888888888888888888


Q ss_pred             HHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------H---HHHHHHHHHHHHHHhhch
Q 013696          140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------K---KQLAEVKSLYEKEVFQKA  206 (438)
Q Consensus       140 ~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~---~~l~~a~~~~~ka~~~~~  206 (438)
                      |++++.++|+++.+++++|.+|..+|++++|+..|+++++++|++..+          .   +++.+|...|.+++...+
T Consensus        80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p  159 (568)
T 2vsy_A           80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV  159 (568)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence            888888888888888888888888888888888888888888888765          2   556667777777776654


Q ss_pred             h
Q 013696          207 S  207 (438)
Q Consensus       207 ~  207 (438)
                      .
T Consensus       160 ~  160 (568)
T 2vsy_A          160 G  160 (568)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.61  E-value=1.2e-14  Score=121.92  Aligned_cols=117  Identities=33%  Similarity=0.513  Sum_probs=105.9

Q ss_pred             CCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHH
Q 013696           78 EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  156 (438)
Q Consensus        78 ~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~  156 (438)
                      +|.....  ++.+|..++..|+|++|+.+|.+++.++|. +.+|+++|.+|..+|++++|+.+|.+++.++|+++.+|++
T Consensus         5 ~~~~~~~--~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            5 KSPSAQE--LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             -CCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ccccHHH--HHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            3444445  789999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHH
Q 013696          157 RATARKELGKLKESIEDSEFALRLEPQ-----NQEIKKQLAEVKS  196 (438)
Q Consensus       157 lg~a~~~lg~~~eA~~~~~~al~l~P~-----~~~~~~~l~~a~~  196 (438)
                      +|.++..+|++++|+.+|++++.++|+     +..+...+..+..
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998     6666655555544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.61  E-value=1.4e-14  Score=130.85  Aligned_cols=148  Identities=14%  Similarity=0.031  Sum_probs=132.2

Q ss_pred             CCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh-cC
Q 013696           56 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL-RR  132 (438)
Q Consensus        56 ~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l-~~  132 (438)
                      |..| ..|++++|+..|.+++..+|.+..+  +..+|.++...|++++|+.+|.+++..+|. ..++.++|.+|... |+
T Consensus        15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~   92 (225)
T 2vq2_A           15 AMEYMRGQDYRQATASIEDALKSDPKNELA--WLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR   92 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCccchHH--HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc
Confidence            3444 7899999999999999999988777  779999999999999999999999999998 89999999999999 99


Q ss_pred             HHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----------HHHHHHHHHHHH
Q 013696          133 FQEAEDDCTEALN--LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEK  200 (438)
Q Consensus       133 ~~eA~~~~~~al~--l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~k  200 (438)
                      +++|+..+++++.  .+|.+..+++.+|.++...|++++|+..|++++.++|.+..++          +++.+|...+.+
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  172 (225)
T 2vq2_A           93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK  172 (225)
T ss_dssp             HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999  7788899999999999999999999999999999999988763          445566666666


Q ss_pred             HHhhc
Q 013696          201 EVFQK  205 (438)
Q Consensus       201 a~~~~  205 (438)
                      ++...
T Consensus       173 ~~~~~  177 (225)
T 2vq2_A          173 YQSRV  177 (225)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            65544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.61  E-value=1.8e-14  Score=133.44  Aligned_cols=149  Identities=17%  Similarity=0.135  Sum_probs=131.9

Q ss_pred             CCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc
Q 013696           54 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR  131 (438)
Q Consensus        54 ~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~  131 (438)
                      .+|..| ..|++++|+..|++++..+|.+..+  +..+|.++...|++++|+.+|.+++..+|. ..++.++|.+|...|
T Consensus        42 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  119 (252)
T 2ho1_A           42 QLGLGYLQRGNTEQAKVPLRKALEIDPSSADA--HAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK  119 (252)
T ss_dssp             HHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCChHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh
Confidence            344445 7899999999999999999988777  779999999999999999999999999998 999999999999999


Q ss_pred             CHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH----------HHHHHHHHHH
Q 013696          132 RFQEAEDDCTEALN--LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK----------QLAEVKSLYE  199 (438)
Q Consensus       132 ~~~eA~~~~~~al~--l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~----------~l~~a~~~~~  199 (438)
                      ++++|+..+.+++.  .+|.++.+++.+|.++...|++++|+..|++++.++|.+..++.          ++.+|...+.
T Consensus       120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  199 (252)
T 2ho1_A          120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYD  199 (252)
T ss_dssp             CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999  88999999999999999999999999999999999999987743          3445555555


Q ss_pred             HHHhh
Q 013696          200 KEVFQ  204 (438)
Q Consensus       200 ka~~~  204 (438)
                      +++..
T Consensus       200 ~~~~~  204 (252)
T 2ho1_A          200 LFAQG  204 (252)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            54443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.61  E-value=4.8e-15  Score=138.58  Aligned_cols=156  Identities=17%  Similarity=0.066  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc
Q 013696           20 QDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK   98 (438)
Q Consensus        20 ~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g   98 (438)
                      ++|++++....+.+...+     ...+.....+..+|..| ..|++++|+..|.+++..+|.+..+  +..+|.+++..|
T Consensus        19 ~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~la~~~~~~~   91 (275)
T 1xnf_A           19 LQQEVILARMEQILASRA-----LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV--FNYLGIYLTQAG   91 (275)
T ss_dssp             HHHHHHHHHHHHHHTSSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHhccc-----ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHcc
Confidence            567777777777665422     01122233445566666 8899999999999999999998887  779999999999


Q ss_pred             cHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013696           99 KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA  177 (438)
Q Consensus        99 ~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~a  177 (438)
                      +|++|+.+|.+++.++|. ..++.++|.+|..+|++++|+..|++++.++|++...+...+.+ ...|++++|+..+.++
T Consensus        92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~  170 (275)
T 1xnf_A           92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQH  170 (275)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            999999999999999998 99999999999999999999999999999999887554444433 3446666666666555


Q ss_pred             HhhCCC
Q 013696          178 LRLEPQ  183 (438)
Q Consensus       178 l~l~P~  183 (438)
                      +...|.
T Consensus       171 ~~~~~~  176 (275)
T 1xnf_A          171 FEKSDK  176 (275)
T ss_dssp             HHHSCC
T ss_pred             HhcCCc
Confidence            555443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.60  E-value=2.1e-15  Score=131.71  Aligned_cols=163  Identities=15%  Similarity=0.053  Sum_probs=139.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL   90 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~   90 (438)
                      +...+...++|++++....+.+...+         .....+..+|..| ..|++++|+..+.+++...|.+..+  +..+
T Consensus        14 ~~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~   82 (186)
T 3as5_A           14 KGISHAKAGRYSQAVMLLEQVYDADA---------FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKV--ATVL   82 (186)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTS---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCc---------cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH--HHHH
Confidence            34455566777777766655553322         1122334455555 8899999999999999999988877  6799


Q ss_pred             HHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Q 013696           91 GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE  169 (438)
Q Consensus        91 g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~e  169 (438)
                      |.+++..|++++|+.+|.+++..+|. ..++..+|.++...|++++|+..+.+++..+|.++.+++.+|.++...|++++
T Consensus        83 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  162 (186)
T 3as5_A           83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE  162 (186)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999998 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCH
Q 013696          170 SIEDSEFALRLEPQNQ  185 (438)
Q Consensus       170 A~~~~~~al~l~P~~~  185 (438)
                      |+.++++++.++|++.
T Consensus       163 A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          163 ALPHFKKANELDEGAS  178 (186)
T ss_dssp             HHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHcCCCch
Confidence            9999999999998764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.60  E-value=1.3e-15  Score=163.61  Aligned_cols=144  Identities=10%  Similarity=-0.058  Sum_probs=129.5

Q ss_pred             CcCCCccchHHHHHhhh--------cCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHH
Q 013696           59 NSYSRNYDPVSHISSSL--------MNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK  129 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al--------~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~  129 (438)
                      +..|++++|+..|++++        ..+|++..+  +..+|.+++..|+|++|+..|+++++++|+ +.+|+++|.+|..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~--~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVEL--PLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhH--HHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence            36799999999999999        889998888  679999999999999999999999999999 9999999999999


Q ss_pred             hcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH----------HHHHHHHH
Q 013696          130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL----------AEVKSLYE  199 (438)
Q Consensus       130 l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l----------~~a~~~~~  199 (438)
                      +|+|++|+.+|++++.++|+++.+|+++|.++..+|++++ +.+|+++++++|++..++..+          ++|...|+
T Consensus       480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~  558 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD  558 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999 999999999999999885444          44455555


Q ss_pred             HHHhhc
Q 013696          200 KEVFQK  205 (438)
Q Consensus       200 ka~~~~  205 (438)
                      +++.++
T Consensus       559 ~al~l~  564 (681)
T 2pzi_A          559 EVPPTS  564 (681)
T ss_dssp             TSCTTS
T ss_pred             hhcccC
Confidence            444444

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.60  E-value=6.6e-15  Score=133.09  Aligned_cols=131  Identities=18%  Similarity=0.166  Sum_probs=116.1

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..|++++|+..|.+++  +| +..+  ++.+|.+|+..|+|++|+.+|.+++.++|. +.+++++|.+|..+|++++|+.
T Consensus        18 ~~~~~~~A~~~~~~a~--~~-~~~~--~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~   92 (213)
T 1hh8_A           18 DKKDWKGALDAFSAVQ--DP-HSRI--CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK   92 (213)
T ss_dssp             HTTCHHHHHHHHHTSS--SC-CHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhCCHHHHHHHHHHHc--CC-ChHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHH
Confidence            7799999999999996  33 3444  889999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHhhcCCccH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013696          139 DCTEALNLDDRYI----------------KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL  197 (438)
Q Consensus       139 ~~~~al~l~p~~~----------------~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~  197 (438)
                      +|++++.+.|.+.                .+++++|.++..+|++++|+.+|++++.++|++..  ..+..+...
T Consensus        93 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~a~~~  165 (213)
T 1hh8_A           93 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH--SKIDKAMEC  165 (213)
T ss_dssp             HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG--GHHHHHHHH
T ss_pred             HHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc--chHHHHHHH
Confidence            9999999877665                99999999999999999999999999999998743  333444443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.59  E-value=2.3e-16  Score=151.60  Aligned_cols=172  Identities=10%  Similarity=0.038  Sum_probs=114.2

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCCh----hHHHH
Q 013696           13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP----DATSE   87 (438)
Q Consensus        13 ~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~----~a~~~   87 (438)
                      ...+..+++|++++..+.+.+.......   ........+..+|..| .+|++++|+.+|++++.+.+...    .+..+
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~  120 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAG---NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK  120 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3455556667777776666654332000   0111122345566666 77888888888888887665332    13447


Q ss_pred             HHHHHHHHHh-ccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHH-------
Q 013696           88 KELGNECFKQ-KKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK-------  152 (438)
Q Consensus        88 ~~~g~~~~~~-g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~-------  152 (438)
                      ..+|.+|... |+|++|+.+|++++.+.|.       ..++.++|.+|..+|+|++|+.+|++++.+.|++..       
T Consensus       121 ~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  200 (292)
T 1qqe_A          121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD  200 (292)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            7888888885 8888888888888887653       356778888888888888888888888888776532       


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          153 AYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       153 a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      +|+++|.++..+|++++|+.+|++++.++|+....
T Consensus       201 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            57788888888888888888888888888876543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.59  E-value=2.7e-14  Score=136.62  Aligned_cols=182  Identities=10%  Similarity=0.057  Sum_probs=142.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCcccccc----ccccCCCC-CC-cC-cCCCccchHHHHHhhhcCCCCChhH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSS----LKSAKKPS-PS-GN-SYSRNYDPVSHISSSLMNEESTPDA   84 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~-~~-~y-~~g~~~eAi~~~~~al~~~p~~~~a   84 (438)
                      +...+...++|++++....+.+...+..........    .......+ +. .| ..|++++|+..+.+++...|.+..+
T Consensus        95 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  174 (327)
T 3cv0_A           95 LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL  174 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Confidence            344555566777777777776655431111000000    00000011 43 34 8899999999999999999988777


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 013696           85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE  163 (438)
Q Consensus        85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~  163 (438)
                        +..+|.++...|++++|+.+|.+++..+|. ..++.++|.+|...|++++|+..|++++.++|+++.+++.+|.++..
T Consensus       175 --~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  252 (327)
T 3cv0_A          175 --HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN  252 (327)
T ss_dssp             --HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence              779999999999999999999999999998 99999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHH
Q 013696          164 LGKLKESIEDSEFALRLEPQ------------NQEIKKQLAEVK  195 (438)
Q Consensus       164 lg~~~eA~~~~~~al~l~P~------------~~~~~~~l~~a~  195 (438)
                      +|++++|+..|++++.+.|.            +..++..+..+.
T Consensus       253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  296 (327)
T 3cv0_A          253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL  296 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH
Confidence            99999999999999999999            566655555444

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.59  E-value=3.5e-15  Score=153.50  Aligned_cols=184  Identities=14%  Similarity=0.087  Sum_probs=157.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHH
Q 013696           13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELG   91 (438)
Q Consensus        13 ~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g   91 (438)
                      +.++...++|++++....+.+...+.          ...+..+|..| ..|++++|+..|.+++..+|++..+  +..+|
T Consensus       250 g~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~  317 (537)
T 3fp2_A          250 GIFHFLKNNLLDAQVLLQESINLHPT----------PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPT--YYHRG  317 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCC----------HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHH--HHHHH
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCCC----------chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHH--HHHHH
Confidence            34555566778888888777766541          12334455566 8899999999999999999998887  77999


Q ss_pred             HHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHH
Q 013696           92 NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES  170 (438)
Q Consensus        92 ~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA  170 (438)
                      .++...|+|++|+.+|.+++.++|. ..++.++|.+|..+|++++|+..|.+++.++|+++.+++.+|.++...|++++|
T Consensus       318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  397 (537)
T 3fp2_A          318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA  397 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            9999999999999999999999998 999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHH----------------H----------HHHHHHHHHHHHHHhhchhh
Q 013696          171 IEDSEFALRLEPQNQEI----------------K----------KQLAEVKSLYEKEVFQKASK  208 (438)
Q Consensus       171 ~~~~~~al~l~P~~~~~----------------~----------~~l~~a~~~~~ka~~~~~~~  208 (438)
                      +..|++++.++|.+...                .          +++.+|...|.+++...+..
T Consensus       398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~  461 (537)
T 3fp2_A          398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS  461 (537)
T ss_dssp             HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC
Confidence            99999999998765321                2          88889999999888776443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.59  E-value=9.1e-15  Score=147.07  Aligned_cols=185  Identities=11%  Similarity=0.098  Sum_probs=147.4

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHH
Q 013696           13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELG   91 (438)
Q Consensus        13 ~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g   91 (438)
                      ...+...++|++++....+.+...+.         ....+..+|..| ..|++++|+..|.+++..+|.+..+  +..+|
T Consensus       150 a~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~l~  218 (450)
T 2y4t_A          150 ALNAFGSGDYTAAIAFLDKILEVCVW---------DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA--FYKIS  218 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHH--HHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHH
Confidence            44466778889988888887765531         122334455556 7899999999999999988888777  66999


Q ss_pred             HHHHHhccHHHHHHHHHHHhccCCC-HHHHHHH------------HHHHHHhcCHHHHHHHHHHHhhcCCccH----HHH
Q 013696           92 NECFKQKKFKEAIDCYSRSIALSPT-AVAYANR------------AMAYLKLRRFQEAEDDCTEALNLDDRYI----KAY  154 (438)
Q Consensus        92 ~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~l------------a~~~~~l~~~~eA~~~~~~al~l~p~~~----~a~  154 (438)
                      .+|...|++++|+.+|.+++.++|+ ..++..+            |.++...|++++|+..|++++.++|+++    .++
T Consensus       219 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~  298 (450)
T 2y4t_A          219 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSK  298 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            9999999999999999999999988 5555444            8899999999999999999999999874    478


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhchhh
Q 013696          155 SRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASK  208 (438)
Q Consensus       155 ~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~~~  208 (438)
                      ..+|.++..+|++++|+..|++++.++|++..+          .+++.+|...|++++.+.+..
T Consensus       299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  362 (450)
T 2y4t_A          299 ERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND  362 (450)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence            889999999999999999999999999988776          345667777777777665443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.59  E-value=8e-15  Score=141.07  Aligned_cols=163  Identities=11%  Similarity=0.013  Sum_probs=79.8

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHH
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE   89 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~   89 (438)
                      .+..++...++++++++..++.+....       .+.....+..+|..| ..|++++|+..|++     |.+..+  +..
T Consensus        70 ~la~~~~~~~~~~~A~~~l~~ll~~~~-------~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~--~~~  135 (291)
T 3mkr_A           70 MFAEYLASHSRRDAIVAELDREMSRSV-------DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLEC--MAM  135 (291)
T ss_dssp             HHHHHHHCSTTHHHHHHHHHHHHHSCC-------CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHH--HHH
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhccc-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHH--HHH
Confidence            345666666677777777666654321       001111122233333 44555555555554     344444  335


Q ss_pred             HHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHH--HHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Q 013696           90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA--MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK  166 (438)
Q Consensus        90 ~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la--~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~  166 (438)
                      +|.+|.+.|++++|+..|+++++.+|+ .......|  .++...|++++|+..|++++..+|+++.+|+++|.++..+|+
T Consensus       136 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  215 (291)
T 3mkr_A          136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR  215 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence            555555555555555555555555554 21111111  111222455555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHhhCCCCHHH
Q 013696          167 LKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       167 ~~eA~~~~~~al~l~P~~~~~  187 (438)
                      +++|+..|++++.++|+++++
T Consensus       216 ~~eA~~~l~~al~~~p~~~~~  236 (291)
T 3mkr_A          216 WEAAEGVLQEALDKDSGHPET  236 (291)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHH
Confidence            555555555555555555554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.59  E-value=6.8e-15  Score=122.50  Aligned_cols=100  Identities=16%  Similarity=0.090  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg  165 (438)
                      ++.+|..++..|++++|+.+|.++++++|+ +.+|+++|.++..+|++++|+..|++++.++|+++.+++.+|.++..+|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            668999999999999999999999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHH
Q 013696          166 KLKESIEDSEFALRLEPQNQE  186 (438)
Q Consensus       166 ~~~eA~~~~~~al~l~P~~~~  186 (438)
                      ++++|+..|+++++++|++..
T Consensus       100 ~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A          100 NANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHC-------
T ss_pred             CHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999998754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.58  E-value=8.5e-15  Score=147.29  Aligned_cols=184  Identities=14%  Similarity=0.055  Sum_probs=151.6

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL   90 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~   90 (438)
                      +...+-..++|++++....+.+...+.         ....+..+|.+| ..|++++|+..|.+++..+|++..+  +..+
T Consensus        32 ~~~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~l  100 (450)
T 2y4t_A           32 LGKKLLAAGQLADALSQFHAAVDGDPD---------NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA--RLQR  100 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCc---------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH--HHHH
Confidence            344555667888988888888765431         122344456666 8899999999999999999998877  6799


Q ss_pred             HHHHHHhccHHHHHHHHHHHhccCCC-H---HHHHHH------------HHHHHHhcCHHHHHHHHHHHhhcCCccHHHH
Q 013696           91 GNECFKQKKFKEAIDCYSRSIALSPT-A---VAYANR------------AMAYLKLRRFQEAEDDCTEALNLDDRYIKAY  154 (438)
Q Consensus        91 g~~~~~~g~y~~Ai~~y~~al~~~p~-~---~~~~~l------------a~~~~~l~~~~eA~~~~~~al~l~p~~~~a~  154 (438)
                      |.+|...|++++|+.+|.+++.++|. .   .++..+            |.++...|++++|+..|++++.++|.++.++
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  180 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR  180 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence            99999999999999999999999998 5   665544            7779999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----------HHHHHHHHHHHHHHhhch
Q 013696          155 SRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKA  206 (438)
Q Consensus       155 ~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~ka~~~~~  206 (438)
                      +.+|.+|...|++++|+..|++++.++|.+..++          +++.+|...|.+++...+
T Consensus       181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  242 (450)
T 2y4t_A          181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ  242 (450)
T ss_dssp             HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999998773          455667777777665543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.58  E-value=8.4e-14  Score=112.32  Aligned_cols=112  Identities=32%  Similarity=0.524  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~  162 (438)
                      +..++.+|..++..|+|++|+.+|.+++..+|. +.++.++|.++..+|++++|+..+.+++.++|+++.+++.+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            344789999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013696          163 ELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (438)
Q Consensus       163 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  195 (438)
                      .+|++++|+..|++++.++|++..++..+..+.
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            999999999999999999999998877766553

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.58  E-value=1.3e-14  Score=151.50  Aligned_cols=151  Identities=13%  Similarity=0.076  Sum_probs=96.2

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  132 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~  132 (438)
                      ++..| ..|++++|+..|++++...|++..+  +..+|.+|.+.|++++|+.+|.++++++|. +.+|..+|.+|...|+
T Consensus       413 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  490 (597)
T 2xpi_A          413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLP--YLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD  490 (597)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHTTTTCSHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCccchHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence            34444 5566666666666666666665555  446666666666666666666666666666 6666666666666666


Q ss_pred             HHHHHHHHHHHhhc------CCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHH
Q 013696          133 FQEAEDDCTEALNL------DDRY-IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVK  195 (438)
Q Consensus       133 ~~eA~~~~~~al~l------~p~~-~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~  195 (438)
                      +++|+..|++++.+      +|++ ..+|..+|.++...|++++|+..|++++.++|++..+          .+++.+|.
T Consensus       491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~  570 (597)
T 2xpi_A          491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI  570 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence            66666666666665      4443 5666666666666666666666666666666666554          24445556


Q ss_pred             HHHHHHHhhchh
Q 013696          196 SLYEKEVFQKAS  207 (438)
Q Consensus       196 ~~~~ka~~~~~~  207 (438)
                      ..|++++.+.+.
T Consensus       571 ~~~~~~l~~~p~  582 (597)
T 2xpi_A          571 THLHESLAISPN  582 (597)
T ss_dssp             HHHHHHHHHCTT
T ss_pred             HHHHHHHhcCCC
Confidence            666666555543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.57  E-value=5.7e-15  Score=141.31  Aligned_cols=112  Identities=12%  Similarity=0.203  Sum_probs=79.3

Q ss_pred             HHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH
Q 013696           94 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE  172 (438)
Q Consensus        94 ~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~  172 (438)
                      +...|++++|+.+|.+++..+|. ..++..+|.+|...|++++|+..+.+++.++|+++.++..+|.++...|++++|+.
T Consensus       148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  227 (327)
T 3cv0_A          148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD  227 (327)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            44444445555555555555555 66777788888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhhCCCCHHHH----------HHHHHHHHHHHHHHhhc
Q 013696          173 DSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       173 ~~~~al~l~P~~~~~~----------~~l~~a~~~~~ka~~~~  205 (438)
                      .|++++.++|.+..++          +++.+|...|.+++...
T Consensus       228 ~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  270 (327)
T 3cv0_A          228 AYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ  270 (327)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            8888888888877653          34455555555555443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.57  E-value=2.3e-14  Score=132.01  Aligned_cols=128  Identities=16%  Similarity=0.075  Sum_probs=114.8

Q ss_pred             cCCCccchHHHHHhhhcCCCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHH-----
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLK-----  129 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~-----  129 (438)
                      ..|++++|+..|++++...|.++. ..+++.+|.+|+..|+|++|+..|.++++.+|+    ..+++.+|.++..     
T Consensus        16 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~   95 (225)
T 2yhc_A           16 QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSA   95 (225)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhh
Confidence            779999999999999999987753 234789999999999999999999999999998    3589999999987     


Q ss_pred             -------------hcCHHHHHHHHHHHhhcCCccHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHh
Q 013696          130 -------------LRRFQEAEDDCTEALNLDDRYIKAY-----------------SRRATARKELGKLKESIEDSEFALR  179 (438)
Q Consensus       130 -------------l~~~~eA~~~~~~al~l~p~~~~a~-----------------~~lg~a~~~lg~~~eA~~~~~~al~  179 (438)
                                   +|++++|+..|++++..+|+++.++                 +.+|.+|...|++.+|+..|+++++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~  175 (225)
T 2yhc_A           96 LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR  175 (225)
T ss_dssp             ------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence                         5789999999999999999987554                 6789999999999999999999999


Q ss_pred             hCCCCHHH
Q 013696          180 LEPQNQEI  187 (438)
Q Consensus       180 l~P~~~~~  187 (438)
                      ..|+++..
T Consensus       176 ~~p~~~~~  183 (225)
T 2yhc_A          176 DYPDTQAT  183 (225)
T ss_dssp             HSTTSHHH
T ss_pred             HCcCCCcc
Confidence            99998743

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.57  E-value=2.6e-14  Score=137.45  Aligned_cols=150  Identities=13%  Similarity=0.048  Sum_probs=117.3

Q ss_pred             CCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh
Q 013696           53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  130 (438)
Q Consensus        53 ~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l  130 (438)
                      ..+|..| .+|++++|+..|++++..+|+.........+...+...|++++|+.+|++++..+|. +.+|+++|.++..+
T Consensus       134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~  213 (291)
T 3mkr_A          134 AMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ  213 (291)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            3344455 789999999999999988887654322111223344558899999999999999988 88899999999999


Q ss_pred             cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHh
Q 013696          131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE-SIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVF  203 (438)
Q Consensus       131 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~e-A~~~~~~al~l~P~~~~~~~~l~~a~~~~~ka~~  203 (438)
                      |++++|+..+++++.++|+++.+++++|.++..+|++.+ +..+++++++++|+++.+.. +.+....|.+++.
T Consensus       214 g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d-~~~~~~~fd~~~~  286 (291)
T 3mkr_A          214 GRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE-YRAKENDFDRLVL  286 (291)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999876 56788999999999987753 4555556665543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=8.4e-14  Score=117.58  Aligned_cols=116  Identities=31%  Similarity=0.497  Sum_probs=106.5

Q ss_pred             CCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHH
Q 013696           77 NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK  152 (438)
Q Consensus        77 ~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~  152 (438)
                      ..|.....  ++.+|..++..|+|++|+.+|.+++.++|+    ..++.++|.+|..+|+|++|+.+|.+++.++|+++.
T Consensus        23 ~~~~~~~~--~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  100 (148)
T 2dba_A           23 PGASSVEQ--LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK  100 (148)
T ss_dssp             TTCCCHHH--HHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred             cchHHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence            34555555  789999999999999999999999999998    688999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013696          153 AYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (438)
Q Consensus       153 a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a  194 (438)
                      +++.+|.++..+|++++|+.+|++++.++|++..++..+..+
T Consensus       101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            999999999999999999999999999999998887665544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.56  E-value=4.5e-14  Score=128.56  Aligned_cols=109  Identities=20%  Similarity=0.169  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHH----------------HHHHHHHhcCHHHHHHHHHHHhhcCCc
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN----------------RAMAYLKLRRFQEAEDDCTEALNLDDR  149 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~----------------la~~~~~l~~~~eA~~~~~~al~l~p~  149 (438)
                      +...|..++..|+|++|+.+|.+++.++|+ +.+|++                +|.+|..+|++++|+..|++++.++|+
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   86 (208)
T 3urz_A            7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN   86 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence            678999999999999999999999999999 888888                999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013696          150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (438)
Q Consensus       150 ~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  195 (438)
                      ++.+|+++|.++..+|++++|+.+|+++++++|++..++..++.+.
T Consensus        87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~  132 (208)
T 3urz_A           87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY  132 (208)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988777654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.56  E-value=1.5e-13  Score=118.30  Aligned_cols=111  Identities=37%  Similarity=0.660  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~  162 (438)
                      +..++.+|..++..|+|++|+.+|.+++.++|. ..++.++|.++..+|+|++|+.++.+++.++|.++.+|+++|.++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            445889999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013696          163 ELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (438)
Q Consensus       163 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a  194 (438)
                      .+|++++|+.+|++++.++|.+..++..+..+
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999998876544444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.56  E-value=6e-14  Score=115.42  Aligned_cols=123  Identities=29%  Similarity=0.415  Sum_probs=114.3

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..|++++|+..|.+++...|.+..+  +..+|.++...|++++|+.+|.+++...|. ..++.++|.++...|++++|+.
T Consensus        13 ~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~   90 (136)
T 2fo7_A           13 KQGDYDEAIEYYQKALELDPRSAEA--WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE   90 (136)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HcCcHHHHHHHHHHHHHcCCcchhH--HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHH
Confidence            6688999999999999998887776  678999999999999999999999999998 8889999999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      .+.+++...|.+..+++.+|.++...|++++|+..|++++.++|.+
T Consensus        91 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           91 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999999999999999999999999999999998863

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.55  E-value=5.6e-14  Score=116.25  Aligned_cols=113  Identities=32%  Similarity=0.541  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~  162 (438)
                      ...++.+|..++..|+|++|+.+|.+++..+|. ..+++++|.+|...|++++|+.+|++++.++|.++.+++.+|.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~   95 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            344889999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696          163 ELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (438)
Q Consensus       163 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  196 (438)
                      .+|++++|+.+|++++.++|.+..++..+..+..
T Consensus        96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  129 (133)
T 2lni_A           96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM  129 (133)
T ss_dssp             HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            9999999999999999999999888776665543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.55  E-value=2.7e-14  Score=131.47  Aligned_cols=167  Identities=7%  Similarity=-0.032  Sum_probs=137.5

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhH-HHHHHH
Q 013696           13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDA-TSEKEL   90 (438)
Q Consensus        13 ~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a-~~~~~~   90 (438)
                      ...+-..++|++++....+.+...+...      .....+..+|.+| ..|++++|+..|++++..+|++..+ .+++.+
T Consensus        11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~   84 (225)
T 2yhc_A           11 AQQKLQDGNWRQAITQLEALDNRYPFGP------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR   84 (225)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTST------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence            3445567899999999998887654111      1112334456666 8999999999999999999988763 347789


Q ss_pred             HHHHHH------------------hccHHHHHHHHHHHhccCCC-HHHH-----------------HHHHHHHHHhcCHH
Q 013696           91 GNECFK------------------QKKFKEAIDCYSRSIALSPT-AVAY-----------------ANRAMAYLKLRRFQ  134 (438)
Q Consensus        91 g~~~~~------------------~g~y~~Ai~~y~~al~~~p~-~~~~-----------------~~la~~~~~l~~~~  134 (438)
                      |.+++.                  .|++++|+..|.++++.+|+ ..++                 ..+|.+|...|+|.
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~  164 (225)
T 2yhc_A           85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV  164 (225)
T ss_dssp             HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence            999886                  57999999999999999998 3222                 67899999999999


Q ss_pred             HHHHHHHHHhhcCCccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696          135 EAEDDCTEALNLDDRYI---KAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       135 eA~~~~~~al~l~p~~~---~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~  185 (438)
                      +|+..|++++...|+++   .+++++|.++..+|++++|+..++++....|++.
T Consensus       165 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          165 AVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL  218 (225)
T ss_dssp             HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred             HHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence            99999999999999875   7899999999999999999999999999888753

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.55  E-value=6.1e-15  Score=151.67  Aligned_cols=188  Identities=15%  Similarity=0.140  Sum_probs=153.4

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHH
Q 013696           13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELG   91 (438)
Q Consensus        13 ~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g   91 (438)
                      .++....+.|++++....+.+...+....  ........+..+|..| ..|++++|+..|.+++..+|. ..+  +..+|
T Consensus       209 ~~~~~a~~~~~~A~~~~~~~l~~~p~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~l~  283 (537)
T 3fp2_A          209 EGYLVANDLLTKSTDMYHSLLSANTVDDP--LRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNS--YIFLA  283 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC--CCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHH--HHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHCCCcch--hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chH--HHHHH
Confidence            45556667888888888888765541110  0000111233444555 789999999999999999988 555  77999


Q ss_pred             HHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHH
Q 013696           92 NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES  170 (438)
Q Consensus        92 ~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA  170 (438)
                      .+++..|++++|+.+|.+++..+|. +.++.++|.+|...|++++|+..|++++.++|+++.+++.+|.++..+|++++|
T Consensus       284 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  363 (537)
T 3fp2_A          284 LTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES  363 (537)
T ss_dssp             HHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHH----------HHHHHHHHHHHHHHhhc
Q 013696          171 IEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       171 ~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~ka~~~~  205 (438)
                      +..|++++.++|++..++          +++.+|...|.+++...
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  408 (537)
T 3fp2_A          364 EAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE  408 (537)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence            999999999999998763          45566666666666554

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.54  E-value=3.5e-14  Score=148.25  Aligned_cols=172  Identities=16%  Similarity=0.114  Sum_probs=146.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL   90 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~   90 (438)
                      +...+...++|+++++...+.+...+         .....+..++..| ..|++++|+..|++++...|.++.+  +..+
T Consensus       413 l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~l  481 (597)
T 2xpi_A          413 FAHSFAIEGEHDQAISAYTTAARLFQ---------GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL--LNEL  481 (597)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHTTT---------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHH--HHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH--HHHH
Confidence            44555556677777776666665432         1122333455556 7899999999999999999998877  7799


Q ss_pred             HHHHHHhccHHHHHHHHHHHhcc------CCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 013696           91 GNECFKQKKFKEAIDCYSRSIAL------SPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (438)
Q Consensus        91 g~~~~~~g~y~~Ai~~y~~al~~------~p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~  162 (438)
                      |.+|...|++++|+.+|.+++++      +|.  ..+|.++|.+|...|++++|+..|++++.++|+++.+|..+|.+|.
T Consensus       482 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  561 (597)
T 2xpi_A          482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYL  561 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            99999999999999999999998      666  7899999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013696          163 ELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (438)
Q Consensus       163 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a  194 (438)
                      ..|++++|+..|+++++++|+++.++..+..+
T Consensus       562 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  593 (597)
T 2xpi_A          562 HKKIPGLAITHLHESLAISPNEIMASDLLKRA  593 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred             HhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            99999999999999999999999887766554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.54  E-value=1.4e-14  Score=138.98  Aligned_cols=129  Identities=10%  Similarity=-0.087  Sum_probs=113.2

Q ss_pred             cC-cCCCccchHHHHHhhhcCCCCC----hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHH
Q 013696           58 GN-SYSRNYDPVSHISSSLMNEEST----PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAM  125 (438)
Q Consensus        58 ~y-~~g~~~eAi~~~~~al~~~p~~----~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~  125 (438)
                      .| ..|++++|+.+|.+++.+.+..    ..+..+.++|.+|...|+|++|+.+|.+++.+.|.       +.++.++|.
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~  125 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35 6899999999999999874322    22556889999999999999999999999998753       568999999


Q ss_pred             HHHHh-cCHHHHHHHHHHHhhcCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696          126 AYLKL-RRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (438)
Q Consensus       126 ~~~~l-~~~~eA~~~~~~al~l~p~~------~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~  186 (438)
                      +|... |++++|+.+|++|+.+.|..      ..++.++|.++..+|+|++|+.+|++++.+.|++..
T Consensus       126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence            99996 99999999999999998754      567999999999999999999999999999987643

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.53  E-value=3.1e-13  Score=110.91  Aligned_cols=113  Identities=37%  Similarity=0.540  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~  162 (438)
                      +..++.+|..++..|+|++|+.+|.+++..+|. +.++.++|.++...|++++|+.++.+++.++|+++.+++.+|.++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence            344789999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696          163 ELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (438)
Q Consensus       163 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  196 (438)
                      .+|++++|+.+|++++.++|++..++..+..+..
T Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  125 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL  125 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            9999999999999999999999888776666554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.53  E-value=1.7e-14  Score=151.28  Aligned_cols=155  Identities=15%  Similarity=0.032  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhcc
Q 013696           21 DWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKK   99 (438)
Q Consensus        21 ~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~   99 (438)
                      ++++++....+.+...+         .....+..+|..| ..|++++|+..|++++..+|++..+  +..+|.+|...|+
T Consensus         4 ~~~~A~~~~~~al~~~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~lg~~~~~~g~   72 (568)
T 2vsy_A            4 DGPRELLQLRAAVRHRP---------QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA--VARLGRVRWTQQR   72 (568)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHH--HHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHCCC
Confidence            45555555555554332         1222344455566 7899999999999999999998887  7799999999999


Q ss_pred             HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc---CCHHHHHHHHH
Q 013696          100 FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL---GKLKESIEDSE  175 (438)
Q Consensus       100 y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l---g~~~eA~~~~~  175 (438)
                      +++|+.+|+++++++|+ ..+++++|.+|..+|++++|+..|++++.++|+++.+++++|.++..+   |++++|+..|+
T Consensus        73 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~  152 (568)
T 2vsy_A           73 HAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVR  152 (568)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            99999999999999999 999999999999999999999999999999999999999999999999   99999999999


Q ss_pred             HHHhhCCCCHH
Q 013696          176 FALRLEPQNQE  186 (438)
Q Consensus       176 ~al~l~P~~~~  186 (438)
                      ++++++|.+..
T Consensus       153 ~al~~~p~~~~  163 (568)
T 2vsy_A          153 AAVAQGVGAVE  163 (568)
T ss_dssp             HHHHHTCCCSC
T ss_pred             HHHhcCCcccC
Confidence            99999998643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.53  E-value=2.8e-13  Score=112.12  Aligned_cols=104  Identities=15%  Similarity=0.151  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-H---HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc---HHHHHHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-A---VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRAT  159 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~---~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~---~~a~~~lg~  159 (438)
                      ++.+|..++..|+|++|+..|.+++..+|+ .   .+++++|.+|..+|+|++|+..|.+++..+|++   +.+++.+|.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            668999999999999999999999999998 4   799999999999999999999999999999999   899999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 013696          160 ARKELGKLKESIEDSEFALRLEPQNQEIKKQ  190 (438)
Q Consensus       160 a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  190 (438)
                      ++..+|++++|+..|++++...|+++.+...
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a  115 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVA  115 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence            9999999999999999999999999876443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.53  E-value=1.3e-13  Score=137.24  Aligned_cols=116  Identities=29%  Similarity=0.462  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhc----------------cCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIA----------------LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL  146 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~----------------~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l  146 (438)
                      +..++.+|+.+++.|+|++|+.+|+++++                ++|. ..+|.++|.||+++|+|++|+.+|++++.+
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            44588999999999999999999999998                6676 899999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696          147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (438)
Q Consensus       147 ~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (438)
                      +|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..+..+.....
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~  355 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  355 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888877776554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.52  E-value=3.6e-14  Score=136.01  Aligned_cols=135  Identities=9%  Similarity=0.011  Sum_probs=122.4

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..|++++|+..|++++..+|++..+  +..+|.++...|++++|+..|.+++..+|+ ...+.+.+..+...+++.+|+.
T Consensus       129 ~~g~~~~A~~~~~~al~~~P~~~~a--~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~  206 (287)
T 3qou_A          129 QESNYTDALPLLXDAWQLSNQNGEI--GLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQ  206 (287)
T ss_dssp             HTTCHHHHHHHHHHHHHHTTSCHHH--HHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hCCCHHHHHHHHHHHHHhCCcchhH--HHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHH
Confidence            6799999999999999999999888  669999999999999999999999999999 6667778888999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHH
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN--QEIKKQLAEVKS  196 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~--~~~~~~l~~a~~  196 (438)
                      .+++++.++|+++.+++.+|.++...|++++|+..|+++++++|++  ..++..+..+..
T Consensus       207 ~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~  266 (287)
T 3qou_A          207 QLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA  266 (287)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998  666555544433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.52  E-value=7.8e-14  Score=111.60  Aligned_cols=105  Identities=20%  Similarity=0.270  Sum_probs=100.1

Q ss_pred             CCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc--cHHHH
Q 013696           78 EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR--YIKAY  154 (438)
Q Consensus        78 ~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~--~~~a~  154 (438)
                      +|++..+  +..+|.+++..|+|++|+.+|.+++.++|. ..+++++|.+|..+|++++|+.++++++.++|.  +..++
T Consensus         2 ~p~~~~~--~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   79 (112)
T 2kck_A            2 VDQNPEE--YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVW   79 (112)
T ss_dssp             CCSSTTG--GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHH
T ss_pred             CCCcHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHH
Confidence            5667777  669999999999999999999999999998 999999999999999999999999999999999  99999


Q ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Q 013696          155 SRRATARKEL-GKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       155 ~~lg~a~~~l-g~~~eA~~~~~~al~l~P~~  184 (438)
                      +.+|.++..+ |++++|+.++++++...|.+
T Consensus        80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           80 AAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            9999999999 99999999999999999975

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.52  E-value=9.2e-15  Score=149.10  Aligned_cols=162  Identities=12%  Similarity=0.044  Sum_probs=104.1

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHH
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKE   89 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~   89 (438)
                      .+...+...++|++++....+.+...+.          ...+..+|..| ..|++++|+..|.+++..+|.+..+  +..
T Consensus       242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~  309 (514)
T 2gw1_A          242 HTGIFKFLKNDPLGAHEDIKKAIELFPR----------VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV--YYH  309 (514)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHH--HHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcc----------HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHH--HHH
Confidence            3455666677888888877777766541          11223344444 5666666666666666666666555  446


Q ss_pred             HHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Q 013696           90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK  168 (438)
Q Consensus        90 ~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~  168 (438)
                      +|.++...|++++|+.+|.+++.++|. ..++.++|.+|...|++++|+..+.+++..+|+++.+++.+|.++...|+++
T Consensus       310 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  389 (514)
T 2gw1_A          310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD  389 (514)
T ss_dssp             HHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHH
Confidence            666666666666666666666666666 6666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHhhCCCC
Q 013696          169 ESIEDSEFALRLEPQN  184 (438)
Q Consensus       169 eA~~~~~~al~l~P~~  184 (438)
                      +|+..|++++.+.|.+
T Consensus       390 ~A~~~~~~a~~~~~~~  405 (514)
T 2gw1_A          390 KALKQYDLAIELENKL  405 (514)
T ss_dssp             HHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhhhcc
Confidence            6666666666666655

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.52  E-value=3.3e-13  Score=110.89  Aligned_cols=115  Identities=25%  Similarity=0.431  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc-------HHHHH
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-------IKAYS  155 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~-------~~a~~  155 (438)
                      +..++.+|..++..|+|++|+.+|.+++..+|. +.++.++|.+|...|++++|+.+|.+++.++|.+       +.+++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            344789999999999999999999999999998 9999999999999999999999999999999887       99999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696          156 RRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (438)
Q Consensus       156 ~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (438)
                      ++|.++..+|++++|+.+|++++.+.| ++.....+..+...+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999 5777777776665443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.51  E-value=2.1e-14  Score=124.74  Aligned_cols=113  Identities=12%  Similarity=-0.020  Sum_probs=100.7

Q ss_pred             hccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 013696           97 QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE  175 (438)
Q Consensus        97 ~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~  175 (438)
                      .+++-.+-..|.+++.++|+ +.+++++|.+++..|+|++|+..|++++.++|+++.+|+++|.++..+|+|++|+.+|+
T Consensus        15 l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~   94 (151)
T 3gyz_A           15 VIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYA   94 (151)
T ss_dssp             HHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            34444455678889999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhchhhh
Q 013696          176 FALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKT  209 (438)
Q Consensus       176 ~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~~~~  209 (438)
                      +++.++|+++.+          .+++.+|...|++++.+.+..+
T Consensus        95 ~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           95 VAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999887          4667788888988888775443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.51  E-value=3.3e-14  Score=125.67  Aligned_cols=131  Identities=12%  Similarity=0.023  Sum_probs=111.9

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHH-HHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAY-LKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~-~~l~~~~eA~~  138 (438)
                      ..|++++|+..|++++..+|++..+  +..+|.++...|++++|+.+|.+++..+|++..+..++.+. ...+...+|+.
T Consensus        18 ~~g~~~~A~~~~~~al~~~P~~~~a--~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~   95 (176)
T 2r5s_A           18 QQGEHAQALNVIQTLSDELQSRGDV--KLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELK   95 (176)
T ss_dssp             HTTCHHHHHHHHHTSCHHHHTSHHH--HHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCCCcHHH--HHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHH
Confidence            7899999999999999999999988  77999999999999999999999999998644444445443 23344556899


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHH
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN--QEIKKQLA  192 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~--~~~~~~l~  192 (438)
                      .+++++.++|+++.+++.+|.++...|++++|+..|+++++++|+.  ..++..+.
T Consensus        96 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~  151 (176)
T 2r5s_A           96 RLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFM  151 (176)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHH
Confidence            9999999999999999999999999999999999999999999975  33544433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.50  E-value=5.5e-14  Score=143.30  Aligned_cols=166  Identities=17%  Similarity=0.095  Sum_probs=97.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHH
Q 013696           14 GFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGN   92 (438)
Q Consensus        14 ~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~   92 (438)
                      ..+..+++|++++....+.+...+.         ....+..+|..| ..|++++|+..|.+++...|.+..+  +..+|.
T Consensus       312 ~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~la~  380 (514)
T 2gw1_A          312 QMNFILQNYDQAGKDFDKAKELDPE---------NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEV--PNFFAE  380 (514)
T ss_dssp             HHHHHTTCTTHHHHHHHHHHHTCSS---------CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHH--HHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhChh---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHH--HHHHHH
Confidence            3444445555555555555543321         111222333334 5566666666666666666665555  446666


Q ss_pred             HHHHhccHHHHHHHHHHHhccCCC-HH------HHHHHHHHHHH---hcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 013696           93 ECFKQKKFKEAIDCYSRSIALSPT-AV------AYANRAMAYLK---LRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (438)
Q Consensus        93 ~~~~~g~y~~Ai~~y~~al~~~p~-~~------~~~~la~~~~~---l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~  162 (438)
                      ++...|++++|+.+|.+++.++|. ..      ++.++|.+|..   .|++++|+..|++++.++|+++.+++.+|.++.
T Consensus       381 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  460 (514)
T 2gw1_A          381 ILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKL  460 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            666666666666666666666554 22      66666666666   666666666666666666666666666666666


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 013696          163 ELGKLKESIEDSEFALRLEPQNQEIKKQ  190 (438)
Q Consensus       163 ~lg~~~eA~~~~~~al~l~P~~~~~~~~  190 (438)
                      .+|++++|+..|++++.++|+++.++..
T Consensus       461 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~  488 (514)
T 2gw1_A          461 QQEDIDEAITLFEESADLARTMEEKLQA  488 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhccccHHHHHH
Confidence            6666666666666666666666655443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.50  E-value=1.1e-13  Score=119.30  Aligned_cols=119  Identities=13%  Similarity=0.128  Sum_probs=107.6

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..|++++|+..|.+++..+|.+..+  +..+|.+++..|+|++|+.+|.+++.++|. +.+++++|.+|..+|++++|+.
T Consensus        25 ~~~~~~~A~~~~~~al~~~~~~~~~--~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  102 (166)
T 1a17_A           25 KAKDYENAIKFYSQAIELNPSNAIY--YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR  102 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHH
Confidence            7899999999999999999998877  779999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhh
Q 013696          139 DCTEALNLDDRYIKAYSRRATA--RKELGKLKESIEDSEFALRL  180 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a--~~~lg~~~eA~~~~~~al~l  180 (438)
                      +|.+++.++|.+..++..++.+  +...|++++|+..+.++..+
T Consensus       103 ~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          103 DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            9999999999999888555544  77888888888888765443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.50  E-value=1e-12  Score=106.76  Aligned_cols=111  Identities=34%  Similarity=0.488  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 013696           85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE  163 (438)
Q Consensus        85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~  163 (438)
                      ..+..+|.+++..|++++|+.+|.+++..+|. ..+++++|.++...|++++|+..+.+++.++|.++.+++.+|.++..
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   89 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK   89 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            34789999999999999999999999999998 89999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013696          164 LGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (438)
Q Consensus       164 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  195 (438)
                      .|++++|+..|++++.++|.+..+...+..+.
T Consensus        90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            99999999999999999999998877666554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.49  E-value=8.3e-14  Score=120.89  Aligned_cols=94  Identities=19%  Similarity=0.129  Sum_probs=83.4

Q ss_pred             HHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCH----------HHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 013696           95 FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF----------QEAEDDCTEALNLDDRYIKAYSRRATARKE  163 (438)
Q Consensus        95 ~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~----------~eA~~~~~~al~l~p~~~~a~~~lg~a~~~  163 (438)
                      -+.+.|++|+.+|.++++++|+ +.+|+++|.++..++++          ++|+..|++||.++|++..+|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3567788999999999999998 88999999999888775          599999999999999999999999999998


Q ss_pred             cC-----------CHHHHHHHHHHHHhhCCCCHHHH
Q 013696          164 LG-----------KLKESIEDSEFALRLEPQNQEIK  188 (438)
Q Consensus       164 lg-----------~~~eA~~~~~~al~l~P~~~~~~  188 (438)
                      +|           ++++|+.+|++|+.++|++...+
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~  128 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL  128 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence            85           89999999999999999987553

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.49  E-value=4.1e-14  Score=132.03  Aligned_cols=131  Identities=18%  Similarity=0.122  Sum_probs=115.1

Q ss_pred             cCCCCCCcC-cCCCccchHHHHHhhhcCC-----CC-ChhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc--------CC
Q 013696           51 AKKPSPSGN-SYSRNYDPVSHISSSLMNE-----ES-TPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--------SP  115 (438)
Q Consensus        51 ~~~~~~~~y-~~g~~~eAi~~~~~al~~~-----p~-~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~--------~p  115 (438)
                      .+..+|..| ..|++++|+..|.+++...     ++ ...+..+..+|.+|...|+|++|+.+|.+++.+        +|
T Consensus        45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  124 (283)
T 3edt_B           45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP  124 (283)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            345566666 8999999999999999863     22 233455889999999999999999999999998        35


Q ss_pred             C-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696          116 T-AVAYANRAMAYLKLRRFQEAEDDCTEALNL--------DDRYIKAYSRRATARKELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       116 ~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l--------~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~  181 (438)
                      . ..++.++|.+|..+|++++|+..|.+++.+        .|....++..+|.++..+|++++|+..|++++.+.
T Consensus       125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  199 (283)
T 3edt_B          125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA  199 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            5 889999999999999999999999999999        78888999999999999999999999999999873

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.49  E-value=7.6e-14  Score=136.99  Aligned_cols=119  Identities=15%  Similarity=0.140  Sum_probs=109.1

Q ss_pred             cCCCccchHHHHHhhhcCCCCChh-------------HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPD-------------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAM  125 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~-------------a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~  125 (438)
                      ..|++++|+..|.+++.++|.+..             +..+.++|.+|++.|+|++|+.+|.++++++|+ +.+|+++|.
T Consensus       159 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~  238 (336)
T 1p5q_A          159 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGE  238 (336)
T ss_dssp             HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            779999999999999999998831             234789999999999999999999999999999 999999999


Q ss_pred             HHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 013696          126 AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES-IEDSEFAL  178 (438)
Q Consensus       126 ~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA-~~~~~~al  178 (438)
                      +|..+|+|++|+.+|++++.++|++..++..+|.++..+|++++| ...|.+++
T Consensus       239 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          239 AHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988 44555554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.47  E-value=4.1e-14  Score=139.06  Aligned_cols=111  Identities=31%  Similarity=0.464  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-H-----------------HHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A-----------------VAYANRAMAYLKLRRFQEAEDDCTEALN  145 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~-----------------~~~~~la~~~~~l~~~~eA~~~~~~al~  145 (438)
                      +..++.+|+.++..|+|++|+.+|.+++.+.|. .                 .+|+++|.||+++|+|++|+.+|++++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            444889999999999999999999999999998 4                 3899999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013696          146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (438)
Q Consensus       146 l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a  194 (438)
                      ++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..+..+
T Consensus       259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l  307 (338)
T 2if4_A          259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL  307 (338)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998886666544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.47  E-value=5.1e-13  Score=120.58  Aligned_cols=123  Identities=25%  Similarity=0.252  Sum_probs=109.7

Q ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 013696           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (438)
Q Consensus        83 ~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~  162 (438)
                      .+..++.+|..++..|+|++|+.+|.+++  +|.+.+++++|.+|..+|++++|+.+|.+++.++|+++.+|+++|.++.
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            34457899999999999999999999995  5568899999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCH----------------HH----------HHHHHHHHHHHHHHHhhchh
Q 013696          163 ELGKLKESIEDSEFALRLEPQNQ----------------EI----------KKQLAEVKSLYEKEVFQKAS  207 (438)
Q Consensus       163 ~lg~~~eA~~~~~~al~l~P~~~----------------~~----------~~~l~~a~~~~~ka~~~~~~  207 (438)
                      .+|++++|+.+|++++.+.|.+.                .+          .+++.+|...|.+++...+.
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence            99999999999999999998866                44          35667788888888777643

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.47  E-value=4.1e-14  Score=145.75  Aligned_cols=133  Identities=14%  Similarity=0.135  Sum_probs=118.8

Q ss_pred             cCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHH
Q 013696           51 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL  128 (438)
Q Consensus        51 ~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~  128 (438)
                      .+...|..| ..|++++|+..|++++.++|.+..+  +..+|.+|+..|+|++|+.+|+++++++|. +.+|+++|.+|.
T Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~--~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   85 (477)
T 1wao_1            8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY--YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   85 (477)
T ss_dssp             TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            456677777 8999999999999999999998877  779999999999999999999999999999 999999999999


Q ss_pred             HhcCHHHHHHHHHHHhhcCCccHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhCCCCH
Q 013696          129 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATA--RKELGKLKESIEDSE-----------FALRLEPQNQ  185 (438)
Q Consensus       129 ~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a--~~~lg~~~eA~~~~~-----------~al~l~P~~~  185 (438)
                      .+|++++|+.+|++++.++|++..++..+|.+  +...|++++|+..++           +++.++|...
T Consensus        86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~  155 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS  155 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence            99999999999999999999999999999998  888999999999999           8888887653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.46  E-value=3e-13  Score=129.25  Aligned_cols=99  Identities=36%  Similarity=0.556  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 013696           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL  164 (438)
Q Consensus        86 ~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l  164 (438)
                      .++.+|+.++..|+|++|+.+|.+++.++|. +.+|+++|.+|..+|+|++|+.+|++++.++|+++.+++++|.+|..+
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   85 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM   85 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3789999999999999999999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCC
Q 013696          165 GKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       165 g~~~eA~~~~~~al~l~P~~  184 (438)
                      |++++|+.+|++++.++|++
T Consensus        86 g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           86 ESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             TCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999976

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.46  E-value=1.8e-13  Score=113.54  Aligned_cols=103  Identities=17%  Similarity=0.137  Sum_probs=97.4

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..|++++|+..|.+++..+|++..+  +..+|.+++..|+|++|+.+|.++++++|+ +.+|+++|.+|..+|++++|+.
T Consensus        16 ~~~~~~~A~~~~~~al~~~p~~~~~--~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~   93 (126)
T 3upv_A           16 TKSDWPNAVKAYTEMIKRAPEDARG--YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE   93 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence            7899999999999999999999888  779999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHhhcC------CccHHHHHHHHHHHHHc
Q 013696          139 DCTEALNLD------DRYIKAYSRRATARKEL  164 (438)
Q Consensus       139 ~~~~al~l~------p~~~~a~~~lg~a~~~l  164 (438)
                      +|++++.++      |.+..++..++.+...+
T Consensus        94 ~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           94 TLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            999999999      99999998888877653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.45  E-value=1.1e-13  Score=131.46  Aligned_cols=171  Identities=15%  Similarity=0.123  Sum_probs=134.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCC------CCCh
Q 013696           10 LDFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNE------ESTP   82 (438)
Q Consensus        10 ~~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~------p~~~   82 (438)
                      ..+...+...++|++++....+.+....... ....+.....+..+|..| ..|++++|+.+|.+++...      ....
T Consensus        31 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  109 (311)
T 3nf1_A           31 HNLVIQYASQGRYEVAVPLCKQALEDLEKTS-GHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA  109 (311)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence            3455666677788888887777665321000 000112223344566666 8899999999999999862      2223


Q ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhccC--------CC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-------
Q 013696           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALS--------PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL-------  146 (438)
Q Consensus        83 ~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~--------p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l-------  146 (438)
                      .+..+..+|.+|...|++++|+.+|.+++.+.        |. ..++.++|.+|...|++++|+.++++++.+       
T Consensus       110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  189 (311)
T 3nf1_A          110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP  189 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence            34558899999999999999999999999984        33 788999999999999999999999999998       


Q ss_pred             -CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696          147 -DDRYIKAYSRRATARKELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       147 -~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~  181 (438)
                       .|....+++.+|.++..+|++++|+..|++++.+.
T Consensus       190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA  225 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence             77888999999999999999999999999999864

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.45  E-value=1.2e-12  Score=126.26  Aligned_cols=138  Identities=9%  Similarity=0.010  Sum_probs=122.6

Q ss_pred             cchHHHHHhhhc-CCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HH-HHHHHHHHHHHhcCHHHHHHHHH
Q 013696           65 YDPVSHISSSLM-NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AV-AYANRAMAYLKLRRFQEAEDDCT  141 (438)
Q Consensus        65 ~eAi~~~~~al~-~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~-~~~~la~~~~~l~~~~eA~~~~~  141 (438)
                      ++|+..|++++. ++|++..+  |..+|..+...|++++|+..|++++++.|. +. +|.++|.++...|++++|+..|+
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~--~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~  158 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLL--YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            899999999999 79988877  779999999999999999999999999998 65 89999999999999999999999


Q ss_pred             HHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHH----------HHHHHHHHHHHHHHhh
Q 013696          142 EALNLDDRYIKAYSRRATARKE-LGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQ  204 (438)
Q Consensus       142 ~al~l~p~~~~a~~~lg~a~~~-lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~ka~~~  204 (438)
                      +|+..+|.+..+|...|..... +|++++|+..|+++++++|+++.++          +++.+|...|++++..
T Consensus       159 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            9999999998888877766443 7999999999999999999998774          4556677777777664

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.44  E-value=1.6e-13  Score=113.40  Aligned_cols=113  Identities=17%  Similarity=0.157  Sum_probs=104.5

Q ss_pred             CCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHH
Q 013696           52 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK  129 (438)
Q Consensus        52 ~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~  129 (438)
                      +..+|..| ..|++++|+..|++++..+|.+..+  +..+|.+++..|++++|+.+|.+++.++|. +.+++++|.+|..
T Consensus        19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~   96 (133)
T 2lni_A           19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL--YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA   96 (133)
T ss_dssp             HHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHH--HHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            34445555 8899999999999999999988777  779999999999999999999999999998 9999999999999


Q ss_pred             hcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Q 013696          130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK  166 (438)
Q Consensus       130 l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~  166 (438)
                      +|++++|+.+|.+++.++|.+..++..+|.++..+|+
T Consensus        97 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           97 MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999998875

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.44  E-value=2.2e-12  Score=105.87  Aligned_cols=119  Identities=32%  Similarity=0.434  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg  165 (438)
                      ++.+|..++..|++++|+..|.+++..+|. ..++.++|.++...|++++|+..+.+++..+|.++.+++.+|.++...|
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG   83 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence            678999999999999999999999999998 8899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHH----------HHHHHHHHHHHHHhhc
Q 013696          166 KLKESIEDSEFALRLEPQNQEIKK----------QLAEVKSLYEKEVFQK  205 (438)
Q Consensus       166 ~~~eA~~~~~~al~l~P~~~~~~~----------~l~~a~~~~~ka~~~~  205 (438)
                      ++++|+..+++++.+.|.+..++.          ++.+|...+.+++...
T Consensus        84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A           84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD  133 (136)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence            999999999999999999877633          3445555555555443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.44  E-value=4.1e-13  Score=125.17  Aligned_cols=146  Identities=23%  Similarity=0.256  Sum_probs=122.4

Q ss_pred             cCCCccchHHHHHhhhcCC-----CC-ChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC--------CC-HHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNE-----ES-TPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--------PT-AVAYANRA  124 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~-----p~-~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~--------p~-~~~~~~la  124 (438)
                      ..|++++|+.+|++++...     ++ ...+..+..+|.+|+..|+|++|+.+|.+++.+.        |. ..++.++|
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            6788999999999999842     12 2234458899999999999999999999999883        44 78899999


Q ss_pred             HHHHHhcCHHHHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHH-
Q 013696          125 MAYLKLRRFQEAEDDCTEALNL--------DDRYIKAYSRRATARKELGKLKESIEDSEFALRL--------EPQNQEI-  187 (438)
Q Consensus       125 ~~~~~l~~~~eA~~~~~~al~l--------~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l--------~P~~~~~-  187 (438)
                      .+|..+|++++|+.+|.+++.+        +|....+++++|.++..+|++++|+.+|++++.+        .|....+ 
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            9999999999999999999988        5778899999999999999999999999999999        5544443 


Q ss_pred             ---------HHHHHHHHHHHHHHHhhc
Q 013696          188 ---------KKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       188 ---------~~~l~~a~~~~~ka~~~~  205 (438)
                               .+++.+|...|.+++...
T Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~l~~~  199 (283)
T 3edt_B          173 NNLASCYLKQGKYQDAETLYKEILTRA  199 (283)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence                     455667777777776654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.44  E-value=2.6e-13  Score=111.55  Aligned_cols=102  Identities=15%  Similarity=0.141  Sum_probs=84.0

Q ss_pred             HhccHHHHHHHHHHHhcc---CCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH
Q 013696           96 KQKKFKEAIDCYSRSIAL---SPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI  171 (438)
Q Consensus        96 ~~g~y~~Ai~~y~~al~~---~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~  171 (438)
                      ..|+|++|+.+|.+++.+   +|. +.+++++|.+|..+|+|++|+.+|++++.++|+++.+++++|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            368889999999999998   476 8889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013696          172 EDSEFALRLEPQNQEIKKQLAEVKSLY  198 (438)
Q Consensus       172 ~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (438)
                      ..|++++.+.|+++.+. .+..++..|
T Consensus        82 ~~~~~al~~~p~~~~~~-~~~~ai~~~  107 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQ-SYKQAILFY  107 (117)
T ss_dssp             HHHHHHHHHHCCCHHHH-HTHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHH-HHHHHHHHH
Confidence            99999999999987654 233444444

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.44  E-value=7.6e-14  Score=121.58  Aligned_cols=107  Identities=8%  Similarity=0.114  Sum_probs=98.0

Q ss_pred             CCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh
Q 013696           53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  130 (438)
Q Consensus        53 ~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l  130 (438)
                      ...|..| ..|+|++|+..|.+++.++|.+..+  +..+|.+|+..|+|++|+.+|.+++.++|+ ..+|+++|.+|..+
T Consensus        15 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   92 (164)
T 3sz7_A           15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIY--LSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM   92 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHH--HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3344455 8899999999999999999998887  779999999999999999999999999999 99999999999999


Q ss_pred             cCHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 013696          131 RRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (438)
Q Consensus       131 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~  161 (438)
                      |++++|+.+|.+++.++|++..+|+.++.+.
T Consensus        93 g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           93 ADYKGAKEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            9999999999999999999999888877543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.44  E-value=8.7e-13  Score=127.23  Aligned_cols=174  Identities=12%  Similarity=-0.041  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChh-HHHHHHHHHHHHHhccH
Q 013696           23 DLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKF  100 (438)
Q Consensus        23 e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~-a~~~~~~g~~~~~~g~y  100 (438)
                      ++++...++++....|.        ....+...|..+ ..|++++|+..|++++.+.|.+.. +  |..+|..+...|++
T Consensus        81 ~~A~~~~~rAl~~~~p~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~~~~~~~~~~~~~  150 (308)
T 2ond_A           81 DEAANIYERAISTLLKK--------NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLV--YIQYMKFARRAEGI  150 (308)
T ss_dssp             HHHHHHHHHHHTTTTTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHH--HHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHhCcc--------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHH--HHHHHHHHHHhcCH
Confidence            66666777777632211        111222333334 789999999999999999998876 5  77999999999999


Q ss_pred             HHHHHHHHHHhccCCC-HHHHHHHHHHHHH-hcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013696          101 KEAIDCYSRSIALSPT-AVAYANRAMAYLK-LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL  178 (438)
Q Consensus       101 ~~Ai~~y~~al~~~p~-~~~~~~la~~~~~-l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al  178 (438)
                      ++|+..|.++++..|. ..+|...|.+... .|++++|+..|++++.++|+++.+|..+|..+..+|++++|+..|++++
T Consensus       151 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al  230 (308)
T 2ond_A          151 KSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL  230 (308)
T ss_dssp             HHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999999999999998 7777777666443 7999999999999999999999999999999999999999999999999


Q ss_pred             hh---CCC-CHHHH----------HHHHHHHHHHHHHHhhch
Q 013696          179 RL---EPQ-NQEIK----------KQLAEVKSLYEKEVFQKA  206 (438)
Q Consensus       179 ~l---~P~-~~~~~----------~~l~~a~~~~~ka~~~~~  206 (438)
                      ..   .|+ ...++          +.+..|...+.+++...+
T Consensus       231 ~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence            96   553 44443          334556666666665543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.43  E-value=3.7e-13  Score=136.41  Aligned_cols=181  Identities=15%  Similarity=0.066  Sum_probs=137.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC---cCCCccchHHHHHhhhcCCCCChhHHHH
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN---SYSRNYDPVSHISSSLMNEESTPDATSE   87 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y---~~g~~~eAi~~~~~al~~~p~~~~a~~~   87 (438)
                      .+...+..+++|++++...++.+...+.... .............|.++   ..++|++|+.+|++++.++|+++.+  +
T Consensus        99 nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~--~  175 (472)
T 4g1t_A           99 NYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS-PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF--T  175 (472)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH--H
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhHhccc-ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH--H
Confidence            3455667788888888877766543320000 00000011111222222   4567999999999999999999988  5


Q ss_pred             HHHHHHHHHh---ccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh----cCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 013696           88 KELGNECFKQ---KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL----RRFQEAEDDCTEALNLDDRYIKAYSRRAT  159 (438)
Q Consensus        88 ~~~g~~~~~~---g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l----~~~~eA~~~~~~al~l~p~~~~a~~~lg~  159 (438)
                      ..+|.+++..   +++++|+..|.++++++|. +.++.++|.++..+    +++++|+..+++++.++|.++.++.++|.
T Consensus       176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~  255 (472)
T 4g1t_A          176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAK  255 (472)
T ss_dssp             HHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            5888886654   6678999999999999999 88898888777654    57889999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013696          160 ARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (438)
Q Consensus       160 a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a  194 (438)
                      +|...|++++|+..|+++++++|++..++..++.+
T Consensus       256 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~  290 (472)
T 4g1t_A          256 FYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC  290 (472)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            99999999999999999999999999887666544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.42  E-value=2.9e-13  Score=134.20  Aligned_cols=164  Identities=9%  Similarity=0.036  Sum_probs=128.5

Q ss_pred             HHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCCh-----hHHHHHH
Q 013696           16 LNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP-----DATSEKE   89 (438)
Q Consensus        16 ~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~-----~a~~~~~   89 (438)
                      +-..++|++++....+.+......   .........+..+|..| ..|++++|+.++.+++.+.+...     .+..+..
T Consensus       113 ~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  189 (383)
T 3ulq_A          113 ELDQREYLSAIKFFKKAESKLIFV---KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL  189 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTGGGC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            344567778888777777543211   01111223445666666 88999999999999998754432     2455889


Q ss_pred             HHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHhh-----cC-CccHHHHHH
Q 013696           90 LGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALN-----LD-DRYIKAYSR  156 (438)
Q Consensus        90 ~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~l~~~~eA~~~~~~al~-----l~-p~~~~a~~~  156 (438)
                      +|.+|...|+|++|+.+|.+++.+.+.       +.++.++|.+|..+|++++|+.++.+++.     .+ |..+.++++
T Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  269 (383)
T 3ulq_A          190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL  269 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence            999999999999999999999987543       56899999999999999999999999998     56 888899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696          157 RATARKELGKLKESIEDSEFALRLEP  182 (438)
Q Consensus       157 lg~a~~~lg~~~eA~~~~~~al~l~P  182 (438)
                      +|.++..+|++++|+.++++++.+.+
T Consensus       270 l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          270 ITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998854

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.42  E-value=2.2e-13  Score=138.13  Aligned_cols=197  Identities=14%  Similarity=0.018  Sum_probs=143.9

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCC------hhH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEEST------PDA   84 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~------~~a   84 (438)
                      ++.+...+++++++++...+++...+........+.....+..+|..| .+|++++|+.+|++++.+.+..      ..+
T Consensus        57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~  136 (472)
T 4g1t_A           57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP  136 (472)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence            455666677888888887777653321111111111122234456666 8999999999999998753211      123


Q ss_pred             HHHHHHHHHHHHh--ccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh---cCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 013696           85 TSEKELGNECFKQ--KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL---RRFQEAEDDCTEALNLDDRYIKAYSRRA  158 (438)
Q Consensus        85 ~~~~~~g~~~~~~--g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l---~~~~eA~~~~~~al~l~p~~~~a~~~lg  158 (438)
                      ..+..+|+++...  ++|++|+.+|+++++++|+ +.++.++|.++..+   +++++|+..+++++.++|+++.++..+|
T Consensus       137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~  216 (472)
T 4g1t_A          137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA  216 (472)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence            3366788777664  5799999999999999999 99999999886654   6778999999999999999999999999


Q ss_pred             HHHHHc----CCHHHHHHHHHHHHhhCCCCHHHH----------HHHHHHHHHHHHHHhhchhh
Q 013696          159 TARKEL----GKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKASK  208 (438)
Q Consensus       159 ~a~~~l----g~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~ka~~~~~~~  208 (438)
                      .++..+    |++++|+..|++++.++|.+..++          +.+.+|...|.+++...+..
T Consensus       217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  280 (472)
T 4g1t_A          217 LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN  280 (472)
T ss_dssp             HHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCh
Confidence            877665    577899999999999999998874          45567777788777766543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.42  E-value=1.2e-13  Score=133.57  Aligned_cols=170  Identities=9%  Similarity=0.029  Sum_probs=132.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCC----hhHHH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEEST----PDATS   86 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~----~~a~~   86 (438)
                      ....+...++|++++....+.+.......   ........+..+|..| .+|++++|+.+|++++.+.+..    ..+..
T Consensus        42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~  118 (307)
T 2ifu_A           42 AAVAFKNAKQLEQAKDAYLQEAEAHANNR---SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA  118 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            34556667788888887777665442110   1111222345566677 7899999999999999874322    22456


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc------HHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKA  153 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~------~~a  153 (438)
                      +.++|.+|.. |+|++|+.+|++++.+.|.       ..++.++|.+|..+|+|++|+.+|++++.+.|.+      ..+
T Consensus       119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  197 (307)
T 2ifu_A          119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK  197 (307)
T ss_dssp             HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence            8899999998 9999999999999998753       5789999999999999999999999999986643      357


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696          154 YSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (438)
Q Consensus       154 ~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~  186 (438)
                      ++.+|.++..+|++++|+.+|++++ ++|....
T Consensus       198 ~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~  229 (307)
T 2ifu_A          198 CIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG  229 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence            8899999999999999999999999 9997653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.41  E-value=1.4e-12  Score=106.98  Aligned_cols=106  Identities=18%  Similarity=0.134  Sum_probs=101.7

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..|++++|+..|.+++..+|.+..+  +..+|.+++..|++++|+.+|.+++..+|. ..+++++|.+|..+|++++|+.
T Consensus        24 ~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  101 (131)
T 2vyi_A           24 KVENFEAAVHFYGKAIELNPANAVY--FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVA  101 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHH
Confidence            7799999999999999999988777  779999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCH
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKL  167 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~  167 (438)
                      ++.+++.++|++..++..+|.++..+|++
T Consensus       102 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A          102 YYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999986

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.41  E-value=4.6e-13  Score=120.32  Aligned_cols=125  Identities=13%  Similarity=0.089  Sum_probs=105.8

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCCChh--------------HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HH
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEESTPD--------------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AV  118 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~--------------a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~  118 (438)
                      .|..| ..|+|++|+..|.+++...|.++.              ...+..+|.+|+..|+|++|+.+|.+++.++|. ..
T Consensus        44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  123 (198)
T 2fbn_A           44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK  123 (198)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHH
Confidence            34444 889999999999999999888761              234789999999999999999999999999998 99


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Q 013696          119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI-EDSEFALR  179 (438)
Q Consensus       119 ~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~-~~~~~al~  179 (438)
                      +++++|.+|..+|+|++|+.+|.+++.++|++..++..++.++..+|++.++. ..|.+.+.
T Consensus       124 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          124 ALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999988877 44544443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.40  E-value=2.3e-13  Score=118.32  Aligned_cols=111  Identities=14%  Similarity=0.069  Sum_probs=97.1

Q ss_pred             CCcC-cCCCccchHHHHHhhhcC------------------CCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC
Q 013696           56 PSGN-SYSRNYDPVSHISSSLMN------------------EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT  116 (438)
Q Consensus        56 ~~~y-~~g~~~eAi~~~~~al~~------------------~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~  116 (438)
                      |..| ..|+|++|+..|.+++.+                  +|....+  +.++|.+|++.|+|++|+.+|.+++.++|.
T Consensus        18 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~nla~~~~~~~~~~~A~~~~~~al~~~p~   95 (162)
T 3rkv_A           18 GNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPL--YANMSQCYLNIGDLHEAEETSSEVLKREET   95 (162)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHH--HHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Confidence            4444 889999999999999998                  4444445  789999999999999999999999999999


Q ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccH-HHHHHHHHHHHHcCCHH
Q 013696          117 -AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI-KAYSRRATARKELGKLK  168 (438)
Q Consensus       117 -~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~-~a~~~lg~a~~~lg~~~  168 (438)
                       +.+|+++|.+|..+|+|++|+.+|.+++.++|++. .+...++.+...++++.
T Consensus        96 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~  149 (162)
T 3rkv_A           96 NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK  149 (162)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence             99999999999999999999999999999999998 66777777776665443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.40  E-value=5.4e-13  Score=114.95  Aligned_cols=104  Identities=13%  Similarity=0.066  Sum_probs=95.3

Q ss_pred             HHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696          104 IDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (438)
Q Consensus       104 i~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P  182 (438)
                      -..|.+++.++|. ..+++++|.+++..|+|++|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|++++.++|
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            3568899999998 899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHH----------HHHHHHHHHHHHHHHhhchh
Q 013696          183 QNQEI----------KKQLAEVKSLYEKEVFQKAS  207 (438)
Q Consensus       183 ~~~~~----------~~~l~~a~~~~~ka~~~~~~  207 (438)
                      +++.+          .+++.+|...|.+++.+.+.
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  121 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN  121 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            99877          45567888888888887654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.39  E-value=5.8e-13  Score=126.31  Aligned_cols=172  Identities=17%  Similarity=0.163  Sum_probs=133.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCC-----CC-Chh
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNE-----ES-TPD   83 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~-----p~-~~~   83 (438)
                      .+...+..+++|++++....+.+....... ....+.....+..+|..| ..|++++|+.+|.+++.+.     ++ ...
T Consensus        74 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  152 (311)
T 3nf1_A           74 ILALVYRDQNKYKDAANLLNDALAIREKTL-GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV  152 (311)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence            345556666788888877777665431000 001112223344556666 8899999999999999873     22 223


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhcc--------CCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc--------
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIAL--------SPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL--------  146 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~--------~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l--------  146 (438)
                      +..+..+|.+++..|++++|+.+|.+++.+        .|. ..++.++|.+|..+|++++|+..+.+++.+        
T Consensus       153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  232 (311)
T 3nf1_A          153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS  232 (311)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            445889999999999999999999999998        555 788999999999999999999999999974        


Q ss_pred             -----------------------------------------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696          147 -----------------------------------------DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       147 -----------------------------------------~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~  183 (438)
                                                               +|..+.+++.+|.+|..+|++++|+.+|++++++.|.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence                                                     4667889999999999999999999999999999875

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.39  E-value=3.5e-13  Score=119.01  Aligned_cols=156  Identities=11%  Similarity=-0.031  Sum_probs=126.6

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL   90 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~   90 (438)
                      +...+-..++|++++....+.+...+         .....+..+|..| ..|++++|+..|++++..+| ++..  +...
T Consensus        12 ~a~~~~~~g~~~~A~~~~~~al~~~P---------~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~--~~~~   79 (176)
T 2r5s_A           12 QVSELLQQGEHAQALNVIQTLSDELQ---------SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSY--KSLI   79 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCHHHH---------TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH--HHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCC---------CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH--HHHH
Confidence            34455566788888888777776554         2223445566666 88999999999999999998 6654  3344


Q ss_pred             HHHH-HHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc--HHHHHHHHHHHHHcCC
Q 013696           91 GNEC-FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY--IKAYSRRATARKELGK  166 (438)
Q Consensus        91 g~~~-~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~--~~a~~~lg~a~~~lg~  166 (438)
                      |... ...+....|+.+|+++++++|+ +.+++++|.++...|++++|+..|.+++.++|++  ..++..+|.++..+|+
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~  159 (176)
T 2r5s_A           80 AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ  159 (176)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred             HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence            5443 3334455689999999999999 9999999999999999999999999999999976  6699999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 013696          167 LKESIEDSEFALR  179 (438)
Q Consensus       167 ~~eA~~~~~~al~  179 (438)
                      +++|+..|+++|.
T Consensus       160 ~~~A~~~y~~al~  172 (176)
T 2r5s_A          160 GNAIASKYRRQLY  172 (176)
T ss_dssp             SCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9999999999874

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.39  E-value=1.8e-13  Score=134.41  Aligned_cols=127  Identities=12%  Similarity=0.054  Sum_probs=79.9

Q ss_pred             cCCCccchHHHHHhhhcCCCCChh---------------HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPD---------------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR  123 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~---------------a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~l  123 (438)
                      ..|+|++|+..|.+++...|.+..               ...+.++|.+|++.|+|++|+.+|.+++.++|+ ..+|+++
T Consensus       191 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  270 (338)
T 2if4_A          191 KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRR  270 (338)
T ss_dssp             SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            789999999999999999887652               014789999999999999999999999999998 9999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696          124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA-RKELGKLKESIEDSEFALRLEPQNQE  186 (438)
Q Consensus       124 a~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a-~~~lg~~~eA~~~~~~al~l~P~~~~  186 (438)
                      |.+|..+|+|++|+.+|++++.++|++..++..++.+ ....+..+.+...|.+++.+.|.++.
T Consensus       271 g~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          271 GKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             HHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            9999999999999999999999999999999999988 44567788999999999999998764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.39  E-value=6.7e-13  Score=109.05  Aligned_cols=98  Identities=10%  Similarity=0.101  Sum_probs=85.1

Q ss_pred             CCCccchHHHHHhhhcC---CCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHH
Q 013696           61 YSRNYDPVSHISSSLMN---EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  136 (438)
Q Consensus        61 ~g~~~eAi~~~~~al~~---~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA  136 (438)
                      .|++++|+..|++++..   +|++..+  +..+|.+|+..|+|++|+.+|.++++++|+ +.+++++|.+|..+|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~--~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAEC--YLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence            58899999999999999   4666666  779999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHhhcCCccHHHHHHHHHH
Q 013696          137 EDDCTEALNLDDRYIKAYSRRATA  160 (438)
Q Consensus       137 ~~~~~~al~l~p~~~~a~~~lg~a  160 (438)
                      +..+.+++.++|+++........+
T Consensus        81 ~~~~~~al~~~p~~~~~~~~~~ai  104 (117)
T 3k9i_A           81 VELLLKIIAETSDDETIQSYKQAI  104 (117)
T ss_dssp             HHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHH
Confidence            999999999999998765433333

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.39  E-value=4.6e-13  Score=112.19  Aligned_cols=98  Identities=13%  Similarity=0.081  Sum_probs=87.4

Q ss_pred             CCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC--------HHHHHHHH
Q 013696           54 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRA  124 (438)
Q Consensus        54 ~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--------~~~~~~la  124 (438)
                      .+|..| ..|+|++|+.+|++++.++|++..+  +.++|.+|+..|+|++|+.+|.++++++|.        +.+|+++|
T Consensus        13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~--~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg   90 (127)
T 4gcn_A           13 DLGNAAYKQKDFEKAHVHYDKAIELDPSNITF--YNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG   90 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence            345555 8999999999999999999999888  779999999999999999999999999875        46899999


Q ss_pred             HHHHHhcCHHHHHHHHHHHhhcCCccHHHH
Q 013696          125 MAYLKLRRFQEAEDDCTEALNLDDRYIKAY  154 (438)
Q Consensus       125 ~~~~~l~~~~eA~~~~~~al~l~p~~~~a~  154 (438)
                      .+|..+|+|++|+.+|++++...|+ +...
T Consensus        91 ~~~~~~~~~~~A~~~~~kal~~~~~-~~~~  119 (127)
T 4gcn_A           91 NAFQKQNDLSLAVQWFHRSLSEFRD-PELV  119 (127)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence            9999999999999999999998875 4433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.39  E-value=4.9e-13  Score=127.74  Aligned_cols=132  Identities=11%  Similarity=0.049  Sum_probs=113.1

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..|++++|+..|.+++..+|++..+  +.++|.+|+..|+|++|+..|.++++++|+ ..+++++|.+|..+|++++|+.
T Consensus        16 ~~g~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~   93 (281)
T 2c2l_A           16 VGRKYPEAAACYGRAITRNPLVAVY--YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIA   93 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCccHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            7899999999999999999998888  779999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHhhcCCccH-----HHHH--------------------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          139 DCTEALNLDDRYI-----KAYS--------------------------RRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       139 ~~~~al~l~p~~~-----~a~~--------------------------~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      +|.+++.++|++.     .++.                          .++.  ...|++++|++.++++++++|++...
T Consensus        94 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--l~~~~~~~A~~~~~~al~~~p~~~~~  171 (281)
T 2c2l_A           94 NLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR--LIAAERERELEECQRNHEGHEDDGHI  171 (281)
T ss_dssp             HHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH--HHHHHHHHHHTTTSGGGTTTSCHHHH
T ss_pred             HHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHhhhccccchhhh
Confidence            9999999998652     1111                          1121  23688999999999999999998776


Q ss_pred             HHHHHHHH
Q 013696          188 KKQLAEVK  195 (438)
Q Consensus       188 ~~~l~~a~  195 (438)
                      ...+....
T Consensus       172 ~~~l~~~~  179 (281)
T 2c2l_A          172 RAQQACIE  179 (281)
T ss_dssp             THHHHHHH
T ss_pred             hhHHHHHH
Confidence            55554433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.39  E-value=8.9e-13  Score=130.63  Aligned_cols=163  Identities=13%  Similarity=0.031  Sum_probs=117.9

Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCC-----hhHHHHHHHH
Q 013696           18 DLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEEST-----PDATSEKELG   91 (438)
Q Consensus        18 ~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~-----~~a~~~~~~g   91 (438)
                      ..++|++++....+++.......   ..+.....+..+|..| ..|++++|+.++.+++.+.+..     ..+..+..+|
T Consensus       113 ~~g~~~~A~~~~~~al~~~~~~~---~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  189 (378)
T 3q15_A          113 DQKEYVEAIGYYREAEKELPFVS---DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA  189 (378)
T ss_dssp             HTTCHHHHHHHHHHHHTTGGGCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHHHHHhhCC---ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence            34566677777666665432110   1112222334556666 7888888888888888764432     2245577888


Q ss_pred             HHHHHhccHHHHHHHHHHHhccCC---C----HHHHHHHHHHHHHhcCHHHHHHHHHHHhh-----cCCccHHHHHHHHH
Q 013696           92 NECFKQKKFKEAIDCYSRSIALSP---T----AVAYANRAMAYLKLRRFQEAEDDCTEALN-----LDDRYIKAYSRRAT  159 (438)
Q Consensus        92 ~~~~~~g~y~~Ai~~y~~al~~~p---~----~~~~~~la~~~~~l~~~~eA~~~~~~al~-----l~p~~~~a~~~lg~  159 (438)
                      .+|...|+|++|+.+|.+++.+.+   +    +.++.++|.+|..+|++++|+.++.+++.     .+|..+.+++++|.
T Consensus       190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  269 (378)
T 3q15_A          190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW  269 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence            888888888888888888888632   1    56788888888888888888888888888     77777888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC
Q 013696          160 ARKELGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       160 a~~~lg~~~eA~~~~~~al~l~P~  183 (438)
                      ++..+|++++|+.++++++.+.+.
T Consensus       270 ~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          270 TLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.38  E-value=8.2e-13  Score=112.41  Aligned_cols=109  Identities=16%  Similarity=0.015  Sum_probs=96.6

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  132 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~  132 (438)
                      .|..| ..|++++|+..|.+++..+|++..+  |..+|.++...|+|++|+.+|.+++.++|+ +.+++++|.||..+|+
T Consensus        24 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  101 (142)
T 2xcb_A           24 LGFNQYQAGKWDDAQKIFQALCMLDHYDARY--FLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD  101 (142)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHccHHHHHHHHHHHHHhCCccHHH--HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence            34444 7899999999999999999999888  779999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696          133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (438)
Q Consensus       133 ~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg  165 (438)
                      +++|+.+|++++.++|+++..+..+..+...++
T Consensus       102 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  134 (142)
T 2xcb_A          102 LDGAESGFYSARALAAAQPAHEALAARAGAMLE  134 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            999999999999999988776655555544433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.38  E-value=1.1e-13  Score=133.84  Aligned_cols=151  Identities=7%  Similarity=-0.006  Sum_probs=125.0

Q ss_pred             CCCCcC-cCCCccchHHHHHhhhcCCCCC----hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHH
Q 013696           54 PSPSGN-SYSRNYDPVSHISSSLMNEEST----PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYA  121 (438)
Q Consensus        54 ~~~~~y-~~g~~~eAi~~~~~al~~~p~~----~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~  121 (438)
                      ..|..| ..|++++|+..|.+++.+.+..    ..+..+.++|.+|...|+|++|+.+|.+++.+.+.       +.++.
T Consensus        41 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~  120 (307)
T 2ifu_A           41 KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALD  120 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            344556 7899999999999999875433    22455889999999999999999999999998532       57899


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHhhcCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------H--
Q 013696          122 NRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE------I--  187 (438)
Q Consensus       122 ~la~~~~~l~~~~eA~~~~~~al~l~p~~------~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~------~--  187 (438)
                      ++|.+|.. |++++|+.+|++|+.+.+..      ..++.++|.+|..+|+|++|+.+|++++.+.|.+..      +  
T Consensus       121 ~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  199 (307)
T 2ifu_A          121 RAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI  199 (307)
T ss_dssp             HHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence            99999999 99999999999999987653      678999999999999999999999999998764421      1  


Q ss_pred             --------HHHHHHHHHHHHHHHhhch
Q 013696          188 --------KKQLAEVKSLYEKEVFQKA  206 (438)
Q Consensus       188 --------~~~l~~a~~~~~ka~~~~~  206 (438)
                              .+++.+|...|++++ ..+
T Consensus       200 ~~g~~~~~~g~~~~A~~~~~~al-~~p  225 (307)
T 2ifu_A          200 AQVLVQLHRADYVAAQKCVRESY-SIP  225 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence                    256778888888877 654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.38  E-value=7.7e-13  Score=136.18  Aligned_cols=114  Identities=35%  Similarity=0.651  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg  165 (438)
                      ++.+|..++..|+|++|+.+|+++++++|. +.+|+++|.+|..+|+|++|+.+|++++.++|+++.+|+++|.+|..+|
T Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g   88 (477)
T 1wao_1            9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   88 (477)
T ss_dssp             SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            668899999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013696          166 KLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (438)
Q Consensus       166 ~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~k  200 (438)
                      ++++|+.+|+++++++|++..++..+..+...+.+
T Consensus        89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  123 (477)
T 1wao_1           89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  123 (477)
T ss_dssp             CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888887777555443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.37  E-value=8.6e-13  Score=130.76  Aligned_cols=151  Identities=8%  Similarity=0.067  Sum_probs=124.0

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCC---CCCh-hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC--------HHHHH
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNE---ESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYA  121 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~---p~~~-~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--------~~~~~  121 (438)
                      .|..| ..|++++|+..|.+++.+.   ++.. .+..+..+|.+|+..|++++|+.+|.+++.+.+.        +.++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            34444 7899999999999999862   2222 4566889999999999999999999999998432        57899


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHhhcCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----C-CCCHHH--
Q 013696          122 NRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRL-----E-PQNQEI--  187 (438)
Q Consensus       122 ~la~~~~~l~~~~eA~~~~~~al~l~p~~------~~a~~~lg~a~~~lg~~~eA~~~~~~al~l-----~-P~~~~~--  187 (438)
                      ++|.+|..+|+|++|+.+|.+++.+.+..      ..+++++|.+|..+|++++|+.+|++++.+     + |....+  
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            99999999999999999999999885533      368999999999999999999999999995     4 554444  


Q ss_pred             --------HHHHHHHHHHHHHHHhhc
Q 013696          188 --------KKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       188 --------~~~l~~a~~~~~ka~~~~  205 (438)
                              .+++.+|...+.+++...
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~  294 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYS  294 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence                    355667777777776654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.37  E-value=7.4e-13  Score=135.49  Aligned_cols=119  Identities=14%  Similarity=0.170  Sum_probs=104.5

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCCChh-------------HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHH
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEESTPD-------------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVA  119 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~-------------a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~  119 (438)
                      .|..| ..|+|.+|+..|.+++.++|.+..             +..+.++|.+|++.|+|++|+.+|.+++.++|+ +.+
T Consensus       274 ~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a  353 (457)
T 1kt0_A          274 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKG  353 (457)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH
Confidence            34444 789999999999999999988731             344889999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Q 013696          120 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED  173 (438)
Q Consensus       120 ~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~  173 (438)
                      |+++|.+|..+|+|++|+.+|++++.++|++..++..++.++..+|++++|...
T Consensus       354 ~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          354 LYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999887644

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.36  E-value=7.3e-12  Score=131.52  Aligned_cols=145  Identities=11%  Similarity=0.103  Sum_probs=132.0

Q ss_pred             ccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhcc----------HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc-
Q 013696           64 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKK----------FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-  131 (438)
Q Consensus        64 ~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~----------y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~-  131 (438)
                      .++|+..+++++.++|++..+  |+.+|.++...|+          |++|+.+|.+++..+|. ..+|++++.++..++ 
T Consensus        45 ~eeal~~~~~~l~~nP~~~ta--W~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATL--WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHCchhHHH--HHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence            457899999999999999999  7799999999998          99999999999999999 999999999999999 


Q ss_pred             -CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHH---------------------
Q 013696          132 -RFQEAEDDCTEALNLDDRYIKAYSRRATARKELG-KLKESIEDSEFALRLEPQNQEIK---------------------  188 (438)
Q Consensus       132 -~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg-~~~eA~~~~~~al~l~P~~~~~~---------------------  188 (438)
                       +|++|+.+|.++++++|.+..||..+|.++..+| .++++++++.++++++|.|..+|                     
T Consensus       123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~  202 (567)
T 1dce_A          123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR  202 (567)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred             ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence             7799999999999999999999999999999999 99999999999999999998873                     


Q ss_pred             ---HHHHHHHHHHHHHHhhchhhhh
Q 013696          189 ---KQLAEVKSLYEKEVFQKASKTL  210 (438)
Q Consensus       189 ---~~l~~a~~~~~ka~~~~~~~~~  210 (438)
                         +.+.++++.+.+++..++.+..
T Consensus       203 ~~~~~~~eel~~~~~ai~~~P~~~s  227 (567)
T 1dce_A          203 LPENVLLKELELVQNAFFTDPNDQS  227 (567)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred             ccHHHHHHHHHHHHHHHhhCCCCcc
Confidence               3456777777888888766544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.36  E-value=2.1e-12  Score=123.56  Aligned_cols=160  Identities=12%  Similarity=0.036  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCC----hhHHHHHHHHHH
Q 013696           19 LQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEEST----PDATSEKELGNE   93 (438)
Q Consensus        19 l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~----~~a~~~~~~g~~   93 (438)
                      .++|++++....+.+...+.  . ............+|..| ..|++++|+.+|.+++...+..    ..+..+..+|.+
T Consensus        88 ~~~y~~A~~~~~~~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~  164 (293)
T 2qfc_A           88 QKRYKEIYNKVWNELKKEEY--H-PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI  164 (293)
T ss_dssp             TTCHHHHHHHHHHHHHTCCC--C-HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhccccC--C-hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            34666666666666654431  0 00000001112244444 6778999999999988754432    124457889999


Q ss_pred             HHHhccHHHHHHHHHHHhcc---CCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc------cHHHHHHHHH
Q 013696           94 CFKQKKFKEAIDCYSRSIAL---SPT-----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR------YIKAYSRRAT  159 (438)
Q Consensus        94 ~~~~g~y~~Ai~~y~~al~~---~p~-----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~------~~~a~~~lg~  159 (438)
                      |+..|+|++|+.+|.+++.+   .|.     ..+++++|.+|..+|+|++|+.++++++.+.+.      ...+|+++|.
T Consensus       165 y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~  244 (293)
T 2qfc_A          165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGE  244 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            99999999999999998843   443     268889999999999999999999999877543      2678889999


Q ss_pred             HHHHcCCHHHH-HHHHHHHHhhC
Q 013696          160 ARKELGKLKES-IEDSEFALRLE  181 (438)
Q Consensus       160 a~~~lg~~~eA-~~~~~~al~l~  181 (438)
                      +|..+|++++| ..+|++++.+.
T Consensus       245 ~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          245 CLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHH
Confidence            99999999999 77788888764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.35  E-value=5.5e-12  Score=118.66  Aligned_cols=175  Identities=17%  Similarity=0.091  Sum_probs=137.5

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-c----CCCccchHHHHHhhhcCCCCChhHH
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-S----YSRNYDPVSHISSSLMNEESTPDAT   85 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~----~g~~~eAi~~~~~al~~~p~~~~a~   85 (438)
                      .+...+...+++++++....+.+...           .......+|..| .    .+++++|+.+|.+++..+  ++.+ 
T Consensus        11 ~lg~~~~~~~~~~~A~~~~~~a~~~~-----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a-   76 (273)
T 1ouv_A           11 GLGAKSYKEKDFTQAKKYFEKACDLK-----------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNG-   76 (273)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH-
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHH-
Confidence            34556666678888888877777521           112334455555 5    889999999999999875  4555 


Q ss_pred             HHHHHHHHHHH----hccHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHhhcCCccHHHHHHH
Q 013696           86 SEKELGNECFK----QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK----LRRFQEAEDDCTEALNLDDRYIKAYSRR  157 (438)
Q Consensus        86 ~~~~~g~~~~~----~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~----l~~~~eA~~~~~~al~l~p~~~~a~~~l  157 (438)
                       +..+|.+|..    .+++++|+.+|++++..+ .+.+++++|.+|..    .+++++|+.+|++++.++  ++.+++++
T Consensus        77 -~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l  152 (273)
T 1ouv_A           77 -CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTIL  152 (273)
T ss_dssp             -HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             -HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHH
Confidence             7799999999    999999999999999874 58899999999999    999999999999999976  68899999


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHH--------------HHHHHHHHHHHHHHhhc
Q 013696          158 ATARKE----LGKLKESIEDSEFALRLEPQNQEIK--------------KQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       158 g~a~~~----lg~~~eA~~~~~~al~l~P~~~~~~--------------~~l~~a~~~~~ka~~~~  205 (438)
                      |.+|..    .+++++|+.+|++++++++  +.+.              +++.+|...|.+++...
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~  216 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLKD--SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE  216 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence            999998    9999999999999998854  3332              34556666666666554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.35  E-value=1.1e-12  Score=125.49  Aligned_cols=155  Identities=13%  Similarity=-0.004  Sum_probs=133.7

Q ss_pred             HHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHH
Q 013696           14 GFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGN   92 (438)
Q Consensus        14 ~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~   92 (438)
                      ..+...+++++++..+.+.+...+         .....+..+|..| ..|++++|+..|++++..+|+....  ....+.
T Consensus       125 ~~~~~~g~~~~A~~~~~~al~~~P---------~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~--~~~~~~  193 (287)
T 3qou_A          125 MQLMQESNYTDALPLLXDAWQLSN---------QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ--GLVAQI  193 (287)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTT---------SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH--HHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCC---------cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH--HHHHHH
Confidence            334445678888888888887765         1222344556666 8899999999999999999965444  557788


Q ss_pred             HHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc--HHHHHHHHHHHHHcCCHHH
Q 013696           93 ECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY--IKAYSRRATARKELGKLKE  169 (438)
Q Consensus        93 ~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~--~~a~~~lg~a~~~lg~~~e  169 (438)
                      .+...+++++|+..|.+++..+|+ ..+++++|.+|...|++++|+..|.+++..+|++  ..++.++|.++..+|+.++
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence            899999999999999999999999 9999999999999999999999999999999998  8999999999999999999


Q ss_pred             HHHHHHHHHh
Q 013696          170 SIEDSEFALR  179 (438)
Q Consensus       170 A~~~~~~al~  179 (438)
                      |+..|++++.
T Consensus       274 a~~~~r~al~  283 (287)
T 3qou_A          274 LASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999885

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.35  E-value=1.1e-12  Score=114.08  Aligned_cols=96  Identities=13%  Similarity=0.121  Sum_probs=86.9

Q ss_pred             cCCCccchHHHHHhhhcCCCCC-------hh---HHHHHHHHHHHHHhccHHHHHHHHHHHhcc-------CCC-HHHH-
Q 013696           60 SYSRNYDPVSHISSSLMNEEST-------PD---ATSEKELGNECFKQKKFKEAIDCYSRSIAL-------SPT-AVAY-  120 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~-------~~---a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~-------~p~-~~~~-  120 (438)
                      ..|+|++|+..|+++|.++|++       ..   +..|.++|.++.+.|+|++|+.+|+++|++       +|+ +.+| 
T Consensus        23 ~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~  102 (159)
T 2hr2_A           23 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWI  102 (159)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHH
Confidence            7799999999999999999983       22   335889999999999999999999999999       999 8889 


Q ss_pred             ---HHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHH
Q 013696          121 ---ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS  155 (438)
Q Consensus       121 ---~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~  155 (438)
                         +++|.++..+|+|++|+.+|++++.++|++...+-
T Consensus       103 ~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~  140 (159)
T 2hr2_A          103 SAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP  140 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred             HHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence               99999999999999999999999999998754433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.35  E-value=5.5e-12  Score=120.58  Aligned_cols=146  Identities=16%  Similarity=0.116  Sum_probs=119.6

Q ss_pred             cCCCccchHHHHHhhhcCCCCChh----HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPD----ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYL  128 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~----a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~  128 (438)
                      ..|++++|+..+.+++...+..+.    ...++.+|..+...|+|++|+.+|.+++.+.+.       ..++.++|.+|.
T Consensus        87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  166 (293)
T 3u3w_A           87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA  166 (293)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence            779999999999999998776665    233556899999999999999999999996533       457999999999


Q ss_pred             HhcCHHHHHHHHHHHhh-------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHH--------
Q 013696          129 KLRRFQEAEDDCTEALN-------LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN------QEI--------  187 (438)
Q Consensus       129 ~l~~~~eA~~~~~~al~-------l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~------~~~--------  187 (438)
                      .+|+|++|+.+|.+++.       ..+....+++++|.+|..+|+|++|+.++++++.+.+..      ..+        
T Consensus       167 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~  246 (293)
T 3u3w_A          167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL  246 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            99999999999999994       233446789999999999999999999999999987543      222        


Q ss_pred             --HH-HHHHHHHHHHHHHhhc
Q 013696          188 --KK-QLAEVKSLYEKEVFQK  205 (438)
Q Consensus       188 --~~-~l~~a~~~~~ka~~~~  205 (438)
                        .+ .+.+|...|++++...
T Consensus       247 ~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          247 RKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHHHHH
Confidence              33 2467888888777654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.34  E-value=2.5e-12  Score=123.05  Aligned_cols=160  Identities=13%  Similarity=0.040  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChh----HHHHHHHHHH
Q 013696           19 LQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD----ATSEKELGNE   93 (438)
Q Consensus        19 l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~----a~~~~~~g~~   93 (438)
                      .++|++++....+.+...+.  .+. .......+..+|..| ..|++++|+.+|.+++.+.+....    +..+..+|.+
T Consensus        88 ~~~y~~a~~~~~~~l~~~~~--~~~-~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~  164 (293)
T 3u3w_A           88 QKRYKEIYNKVWNELKKEEY--HPE-FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI  164 (293)
T ss_dssp             TTCHHHHHHHHHHHHTTCCC--CHH-HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHhccccC--ChH-HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            35677777776666653320  000 000001112345555 678999999999999986543322    4458899999


Q ss_pred             HHHhccHHHHHHHHHHHhcc------CC-C-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc------HHHHHHHHH
Q 013696           94 CFKQKKFKEAIDCYSRSIAL------SP-T-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRAT  159 (438)
Q Consensus        94 ~~~~g~y~~Ai~~y~~al~~------~p-~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~------~~a~~~lg~  159 (438)
                      |...|+|++|+.+|.+++..      ++ . +.+++|+|.+|..+|+|++|+.++.+++.+.+..      +.+|+++|.
T Consensus       165 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~  244 (293)
T 3u3w_A          165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGE  244 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            99999999999999999953      21 2 6789999999999999999999999999887543      789999999


Q ss_pred             HHHHcCC-HHHHHHHHHHHHhhC
Q 013696          160 ARKELGK-LKESIEDSEFALRLE  181 (438)
Q Consensus       160 a~~~lg~-~~eA~~~~~~al~l~  181 (438)
                      ++..+|+ +++|+.+|++|+.+.
T Consensus       245 ~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          245 CLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCcHHHHHHHHHHHHHHH
Confidence            9999995 799999999998764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.34  E-value=1.2e-12  Score=113.48  Aligned_cols=90  Identities=14%  Similarity=0.134  Sum_probs=84.0

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccH----------HHHHHHHHHHhccCCC-HHHHHHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKF----------KEAIDCYSRSIALSPT-AVAYANRAMAYL  128 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y----------~~Ai~~y~~al~~~p~-~~~~~~la~~~~  128 (438)
                      +.+.|++|+..|++++.++|++.++  |.++|.++...+++          ++|+.+|+++|+++|+ ..+|+++|.+|.
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea--~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADN--LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            5678999999999999999999998  77999999999875          5999999999999999 999999999999


Q ss_pred             Hhc-----------CHHHHHHHHHHHhhcCCccH
Q 013696          129 KLR-----------RFQEAEDDCTEALNLDDRYI  151 (438)
Q Consensus       129 ~l~-----------~~~eA~~~~~~al~l~p~~~  151 (438)
                      .+|           +|++|+.+|++|+.++|++.
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            885           89999999999999999985

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.33  E-value=1.1e-12  Score=105.46  Aligned_cols=93  Identities=30%  Similarity=0.508  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc------HHHHHH
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSR  156 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~------~~a~~~  156 (438)
                      +..++.+|.+++..|+|++|+.+|.+++.++|. +.+++++|.||..+|+|++|+.+|++++.++|++      ..++++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            344789999999999999999999999999998 9999999999999999999999999999999998      999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHH
Q 013696          157 RATARKELGKLKESIEDSEF  176 (438)
Q Consensus       157 lg~a~~~lg~~~eA~~~~~~  176 (438)
                      +|.++..+|+++.|+..+++
T Consensus        84 ~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHhHhhhHhHHHH
Confidence            99999999998888776654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.33  E-value=2.9e-11  Score=117.05  Aligned_cols=148  Identities=7%  Similarity=-0.063  Sum_probs=131.3

Q ss_pred             cCCCc-cchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc--cHHHHHHHHHHHhccCCC-HHHHHHHHHHH----HHh-
Q 013696           60 SYSRN-YDPVSHISSSLMNEESTPDATSEKELGNECFKQK--KFKEAIDCYSRSIALSPT-AVAYANRAMAY----LKL-  130 (438)
Q Consensus        60 ~~g~~-~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g--~y~~Ai~~y~~al~~~p~-~~~~~~la~~~----~~l-  130 (438)
                      ..|.+ ++|+..+.++|.++|.+..+  |+.+|.++...|  ++++++.++..++..+|. ..+|..++.++    ..+ 
T Consensus        44 ~~~e~s~~aL~~t~~~L~~nP~~~ta--Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~  121 (306)
T 3dra_A           44 KAEEYSERALHITELGINELASHYTI--WIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNN  121 (306)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             HcCCCCHHHHHHHHHHHHHCcHHHHH--HHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcc
Confidence            33444 58999999999999999999  779999999999  999999999999999999 99999999999    777 


Q ss_pred             --cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHH----------------
Q 013696          131 --RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK--ESIEDSEFALRLEPQNQEIKKQ----------------  190 (438)
Q Consensus       131 --~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~--eA~~~~~~al~l~P~~~~~~~~----------------  190 (438)
                        +++++++..|.+++.++|.+..+|+.++.++..+|.++  ++++.+.+++.++|.|..++..                
T Consensus       122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~  201 (306)
T 3dra_A          122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNT  201 (306)
T ss_dssp             TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhh
Confidence              79999999999999999999999999999999999999  9999999999999999988543                


Q ss_pred             HHHHHHHHHHHHhhchhhh
Q 013696          191 LAEVKSLYEKEVFQKASKT  209 (438)
Q Consensus       191 l~~a~~~~~ka~~~~~~~~  209 (438)
                      +.+++..+.+++..++.+.
T Consensus       202 ~~eEl~~~~~aI~~~p~n~  220 (306)
T 3dra_A          202 IDEELNYVKDKIVKCPQNP  220 (306)
T ss_dssp             HHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHHHHHHHHhCCCCc
Confidence            5556666666666665544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.33  E-value=4.3e-12  Score=119.42  Aligned_cols=141  Identities=14%  Similarity=0.106  Sum_probs=120.4

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHH----hccHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK  129 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~----~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~  129 (438)
                      +|..| ..|++++|+.+|++++.  +++..+  ++.+|.+|..    .+++++|+.+|.++++.+ .+.+++++|.+|..
T Consensus        12 lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a--~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~   86 (273)
T 1ouv_A           12 LGAKSYKEKDFTQAKKYFEKACD--LKENSG--CFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLGNLYYS   86 (273)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH--TTCHHH--HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHH--CCCHHH--HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhC
Confidence            34445 67899999999999998  556666  7799999999    999999999999999985 58999999999999


Q ss_pred             ----hcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHH-------------
Q 013696          130 ----LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLEPQNQEIK-------------  188 (438)
Q Consensus       130 ----l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~----lg~~~eA~~~~~~al~l~P~~~~~~-------------  188 (438)
                          .+++++|+.+|++++..+  ++.+++.+|.+|..    .|++++|+.+|++++.+++  ..+.             
T Consensus        87 g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~  162 (273)
T 1ouv_A           87 GQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND--GDGCTILGSLYDAGRGT  162 (273)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSS
T ss_pred             CCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc--HHHHHHHHHHHHcCCCC
Confidence                999999999999999984  89999999999999    9999999999999999874  3332             


Q ss_pred             -HHHHHHHHHHHHHHhh
Q 013696          189 -KQLAEVKSLYEKEVFQ  204 (438)
Q Consensus       189 -~~l~~a~~~~~ka~~~  204 (438)
                       +++.+|...|++++..
T Consensus       163 ~~~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          163 PKDLKKALASYDKACDL  179 (273)
T ss_dssp             CCCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHC
Confidence             2345566666666544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.33  E-value=1.2e-13  Score=137.19  Aligned_cols=192  Identities=13%  Similarity=0.068  Sum_probs=143.9

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCC-----------------ccchHHHHHh
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSR-----------------NYDPVSHISS   73 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~-----------------~~eAi~~~~~   73 (438)
                      +...+..+++|++++....+.+......   ...+.....+..+|..| ..|+                 +++|+.+|.+
T Consensus       132 l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~  208 (411)
T 4a1s_A          132 LGNTLKVMGRFDEAAICCERHLTLARQL---GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE  208 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            3445555666777776666655442200   00111222334555566 7788                 9999999999


Q ss_pred             hhcCCCC----ChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 013696           74 SLMNEES----TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTE  142 (438)
Q Consensus        74 al~~~p~----~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~l~~~~eA~~~~~~  142 (438)
                      ++.+.+.    ...+..+..+|.+|+..|+|++|+.+|.+++.+.+.       ..++.++|.+|..+|++++|+.+|++
T Consensus       209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  288 (411)
T 4a1s_A          209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR  288 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            8875321    223445889999999999999999999999998754       45899999999999999999999999


Q ss_pred             HhhcCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HH----------HHHHHHHHHHHHH
Q 013696          143 ALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ------EI----------KKQLAEVKSLYEK  200 (438)
Q Consensus       143 al~l~p~~------~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~------~~----------~~~l~~a~~~~~k  200 (438)
                      ++.+.+..      ..++..+|.++..+|++++|+.+|++++.+.+...      .+          .+++.+|...|.+
T Consensus       289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  368 (411)
T 4a1s_A          289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ  368 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            99988754      78899999999999999999999999999865431      11          4567788888888


Q ss_pred             HHhhch
Q 013696          201 EVFQKA  206 (438)
Q Consensus       201 a~~~~~  206 (438)
                      ++.+..
T Consensus       369 al~~~~  374 (411)
T 4a1s_A          369 HLQLAX  374 (411)
T ss_dssp             HHHHCC
T ss_pred             HHHHHh
Confidence            877653

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.32  E-value=3.3e-12  Score=106.04  Aligned_cols=91  Identities=15%  Similarity=0.060  Sum_probs=81.9

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..|++++|+..|++++..+|++..+  ++.+|.++...|++++|+.+|+++++++|+ ..+++++|.+|..+|++++|+.
T Consensus        29 ~~g~~~~A~~~~~~al~~~P~~~~a--~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~  106 (121)
T 1hxi_A           29 KLANLAEAALAFEAVCQKEPEREEA--WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALA  106 (121)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            7899999999999999999999988  779999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHhhcCCccHH
Q 013696          139 DCTEALNLDDRYIK  152 (438)
Q Consensus       139 ~~~~al~l~p~~~~  152 (438)
                      .|++++.++|++..
T Consensus       107 ~~~~al~~~P~~~~  120 (121)
T 1hxi_A          107 SLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHC-------
T ss_pred             HHHHHHHhCcCCCC
Confidence            99999999998754

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.32  E-value=1.7e-11  Score=98.56  Aligned_cols=101  Identities=17%  Similarity=0.185  Sum_probs=95.8

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..|++++|+..|.+++..+|.+..+  +..+|.+++..|+|++|+.+|.+++..+|. +.++.++|.++..+|++++|+.
T Consensus        16 ~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~   93 (118)
T 1elw_A           16 SVGNIDDALQCYSEAIKLDPHNHVL--YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKR   93 (118)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHHCCCcHHH--HHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHH
Confidence            7799999999999999999998877  779999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHH
Q 013696          139 DCTEALNLDDRYIKAYSRRATARK  162 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~  162 (438)
                      .+.+++.++|+++.++..++.+..
T Consensus        94 ~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           94 TYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHhhc
Confidence            999999999999999999987753

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.31  E-value=2.8e-11  Score=98.60  Aligned_cols=98  Identities=15%  Similarity=0.140  Sum_probs=84.1

Q ss_pred             HHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696          102 EAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL  180 (438)
Q Consensus       102 ~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l  180 (438)
                      .|+.+|.++++.+|. +.+++++|.+|...|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|++++.+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            578899999999998 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC--HHHHHHHHHHHHHHH
Q 013696          181 EPQN--QEIKKQLAEVKSLYE  199 (438)
Q Consensus       181 ~P~~--~~~~~~l~~a~~~~~  199 (438)
                      .|.+  ......+..++..+.
T Consensus        83 ~~~~~~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           83 AQSRGDQQVVKELQVFLRRLA  103 (115)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHhc
Confidence            8843  444445554444433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.30  E-value=2e-11  Score=98.93  Aligned_cols=108  Identities=26%  Similarity=0.376  Sum_probs=100.2

Q ss_pred             CCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCH
Q 013696           56 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF  133 (438)
Q Consensus        56 ~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~  133 (438)
                      |..| ..|++++|+..|.+++...|.+..+  +..+|.+++..|++++|+.+|.+++..+|. ..++.++|.+|...|++
T Consensus        16 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~   93 (125)
T 1na0_A           16 GNAYYKQGDYDEAIEYYQKALELDPNNAEA--WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY   93 (125)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCcHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH
Confidence            3344 7799999999999999999988777  779999999999999999999999999998 89999999999999999


Q ss_pred             HHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696          134 QEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (438)
Q Consensus       134 ~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg  165 (438)
                      ++|+..+.+++.++|+++.++..+|.++..+|
T Consensus        94 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           94 DEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999988765

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.30  E-value=3.5e-12  Score=112.06  Aligned_cols=116  Identities=16%  Similarity=0.158  Sum_probs=99.1

Q ss_pred             HHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHH-HHHcCCH--
Q 013696           92 NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA-RKELGKL--  167 (438)
Q Consensus        92 ~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a-~~~lg~~--  167 (438)
                      ..+...|+|++|+..|.+++..+|. +.+|+.+|.+|...|++++|+..|.+++.++|+++.+++.+|.+ +...|++  
T Consensus        18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence            4456789999999999999999998 99999999999999999999999999999999999999999999 8899999  


Q ss_pred             HHHHHHHHHHHhhCCCCHHHH----------HHHHHHHHHHHHHHhhchh
Q 013696          168 KESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKAS  207 (438)
Q Consensus       168 ~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~ka~~~~~~  207 (438)
                      ++|+..|++++.++|++..++          +++.+|...|.+++...+.
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  147 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP  147 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence            999999999999999998773          4456667777777666543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.30  E-value=5e-13  Score=131.69  Aligned_cols=169  Identities=18%  Similarity=0.154  Sum_probs=106.5

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChh----HHHH
Q 013696           13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD----ATSE   87 (438)
Q Consensus        13 ~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~----a~~~   87 (438)
                      ...+...++|++++....+.+......   ...+.....+..+|..| ..|++++|+.+|.+++.+.+....    +..+
T Consensus        54 ~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  130 (406)
T 3sf4_A           54 GNAYFYLHDYAKALEYHHHDLTLARTI---GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARAL  130 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHH
Confidence            344444555566655555544332100   00111122233444455 677788888888777776543222    3346


Q ss_pred             HHHHHHHHHhcc--------------------HHHHHHHHHHHhccC------CC-HHHHHHHHHHHHHhcCHHHHHHHH
Q 013696           88 KELGNECFKQKK--------------------FKEAIDCYSRSIALS------PT-AVAYANRAMAYLKLRRFQEAEDDC  140 (438)
Q Consensus        88 ~~~g~~~~~~g~--------------------y~~Ai~~y~~al~~~------p~-~~~~~~la~~~~~l~~~~eA~~~~  140 (438)
                      ..+|.+|...|+                    |++|+.+|.+++.+.      +. ..++.++|.+|..+|++++|+.++
T Consensus       131 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  210 (406)
T 3sf4_A          131 YNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH  210 (406)
T ss_dssp             HHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHH
T ss_pred             HHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            677888888888                    888888887777762      22 566777888888888888888888


Q ss_pred             HHHhhcCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          141 TEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       141 ~~al~l~p~~------~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      .+++.+.+..      ..+++.+|.++..+|++++|+.+|++++.+.|..
T Consensus       211 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  260 (406)
T 3sf4_A          211 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL  260 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence            8887765543      2377778888888888888888888887776543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.30  E-value=3.4e-12  Score=106.64  Aligned_cols=109  Identities=12%  Similarity=0.011  Sum_probs=97.1

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  132 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~  132 (438)
                      +|..| ..|++++|+..|.+++..+|.+..+  +..+|.+++..|+|++|+.+|.+++.++|. +.+++++|.+|..+|+
T Consensus        15 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~   92 (137)
T 3q49_B           15 QGNRLFVGRKYPEAAACYGRAITRNPLVAVY--YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES   92 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHhhCcCcHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhh
Confidence            44444 8899999999999999999998887  779999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCc-----cHHHHHHHHHHHHHcC
Q 013696          133 FQEAEDDCTEALNLDDR-----YIKAYSRRATARKELG  165 (438)
Q Consensus       133 ~~eA~~~~~~al~l~p~-----~~~a~~~lg~a~~~lg  165 (438)
                      +++|+.+|.+++.++|+     +..++..+..+.....
T Consensus        93 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~  130 (137)
T 3q49_B           93 YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW  130 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998     6666666666655443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.29  E-value=1.3e-10  Score=113.44  Aligned_cols=130  Identities=10%  Similarity=0.061  Sum_probs=119.3

Q ss_pred             cchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhcc----------HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc--
Q 013696           65 YDPVSHISSSLMNEESTPDATSEKELGNECFKQKK----------FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR--  131 (438)
Q Consensus        65 ~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~----------y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~--  131 (438)
                      ++|+..+..+|.++|.+..+  |+.++.++...+.          +.+++.++..++..+|. ..+|..++.++..++  
T Consensus        47 ~eaL~~t~~~L~~nP~~yta--Wn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~  124 (331)
T 3dss_A           47 ESVLELTSQILGANPDFATL--WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  124 (331)
T ss_dssp             HHHHHHHHHHHTTCTTCHHH--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHCchhHHH--HHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc
Confidence            47999999999999999999  7788888887776          79999999999999999 999999999999999  


Q ss_pred             CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696          132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK-LKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (438)
Q Consensus       132 ~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~-~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  196 (438)
                      .+++++.+|.+++.++|.|..||..++.+...+|. ++++++++.+++.++|.|..++.....++.
T Consensus       125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~  190 (331)
T 3dss_A          125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP  190 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            49999999999999999999999999999999999 699999999999999999998665555444

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.28  E-value=1.3e-11  Score=122.24  Aligned_cols=146  Identities=10%  Similarity=0.037  Sum_probs=120.1

Q ss_pred             cCCCccchHHHHHhhhcCCCC----ChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC--------HHHHHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEES----TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAMAY  127 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~----~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--------~~~~~~la~~~  127 (438)
                      ..|++++|+..|.+++.+.+.    ...+..+..+|.+|+..|+++.|+.+|.+++.+.+.        +.++.++|.+|
T Consensus       113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y  192 (378)
T 3q15_A          113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY  192 (378)
T ss_dssp             HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence            789999999999999986432    123556889999999999999999999999987532        66899999999


Q ss_pred             HHhcCHHHHHHHHHHHhhcCC------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCHHH---------
Q 013696          128 LKLRRFQEAEDDCTEALNLDD------RYIKAYSRRATARKELGKLKESIEDSEFALR-----LEPQNQEI---------  187 (438)
Q Consensus       128 ~~l~~~~eA~~~~~~al~l~p------~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~-----l~P~~~~~---------  187 (438)
                      ..+|+|++|+.+|.+|+.+.+      ....+++++|.+|..+|++++|+.+|++++.     .+|....+         
T Consensus       193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  272 (378)
T 3q15_A          193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC  272 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence            999999999999999998743      2356899999999999999999999999999     66665444         


Q ss_pred             -HHHHHHHHHHHHHHHhhc
Q 013696          188 -KKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       188 -~~~l~~a~~~~~ka~~~~  205 (438)
                       .+++.+|...+++++...
T Consensus       273 ~~g~~~~A~~~~~~al~~~  291 (378)
T 3q15_A          273 KAGQTQKAFQFIEEGLDHI  291 (378)
T ss_dssp             HTTCHHHHHHHHHHHHHHC
T ss_pred             HCCCHHHHHHHHHHHHHHH
Confidence             345566666666666543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.28  E-value=1.8e-11  Score=118.43  Aligned_cols=167  Identities=11%  Similarity=-0.006  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCC--CccchHHHHHhhhcCCCCChhHHHHHHHHHHH---
Q 013696           21 DWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYS--RNYDPVSHISSSLMNEESTPDATSEKELGNEC---   94 (438)
Q Consensus        21 ~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g--~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~---   94 (438)
                      .-++++...++.|...+ ...        ......+... .+|  ++++++..+..+|..+|.+..+  |+.++.++   
T Consensus        48 ~s~~aL~~t~~~L~~nP-~~~--------taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a--W~~R~~iL~~~  116 (306)
T 3dra_A           48 YSERALHITELGINELA-SHY--------TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI--WNYRQLIIGQI  116 (306)
T ss_dssp             CSHHHHHHHHHHHHHCT-TCH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH--HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCc-HHH--------HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH--HHHHHHHHHHH
Confidence            34567777777776664 111        1111111122 445  8999999999999999999999  77888888   


Q ss_pred             -HHh---ccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHH--HHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC-
Q 013696           95 -FKQ---KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ--EAEDDCTEALNLDDRYIKAYSRRATARKELGK-  166 (438)
Q Consensus        95 -~~~---g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~--eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~-  166 (438)
                       ...   +++++++.++.+++..+|. ..+|++++.++..++.++  +++..+++++..+|.|..||+.++.++..+|+ 
T Consensus       117 ~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~  196 (306)
T 3dra_A          117 MELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHL  196 (306)
T ss_dssp             HHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGG
T ss_pred             HHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc
Confidence             666   7899999999999999999 999999999999999999  99999999999999999999999999999998 


Q ss_pred             -----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013696          167 -----LKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (438)
Q Consensus       167 -----~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (438)
                           ++++++++.+++.++|.|..++..+.-++...
T Consensus       197 ~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~  233 (306)
T 3dra_A          197 ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERF  233 (306)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT
T ss_pred             chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc
Confidence                 99999999999999999999988777665543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.28  E-value=3.3e-11  Score=115.18  Aligned_cols=123  Identities=15%  Similarity=0.070  Sum_probs=106.0

Q ss_pred             cCCCccchHHHHHhhhcCCCCChh----HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPD----ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYL  128 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~----a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~  128 (438)
                      ..|+|++|+..+.+++...+....    ...++.+|..+...|+|++|+.+|.+++.+.+.       ..++.++|.+|.
T Consensus        87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  166 (293)
T 2qfc_A           87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA  166 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            789999999999999998776542    233567899999999999999999999986532       568999999999


Q ss_pred             HhcCHHHHHHHHHHHh---hcCCcc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696          129 KLRRFQEAEDDCTEAL---NLDDRY----IKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (438)
Q Consensus       129 ~l~~~~eA~~~~~~al---~l~p~~----~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P  182 (438)
                      .+|+|++|+.+|.+++   ...|++    +.+++++|.+|..+|+|++|+.+|++++.+.+
T Consensus       167 ~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999   444543    36899999999999999999999999998864

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.28  E-value=7.7e-13  Score=130.36  Aligned_cols=191  Identities=14%  Similarity=0.119  Sum_probs=143.7

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCC--------------------ccchHHH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSR--------------------NYDPVSH   70 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~--------------------~~eAi~~   70 (438)
                      +...+..+++|++++....+.+...+...   ........+..+|..| ..|+                    +++|+..
T Consensus        93 la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~  169 (406)
T 3sf4_A           93 LGNTLKVLGNFDEAIVCCQRHLDISRELN---DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF  169 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            44555666778888777766665442100   0011122334455555 6788                    9999999


Q ss_pred             HHhhhcCCCC----ChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHhcCHHHHHHH
Q 013696           71 ISSSLMNEES----TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDD  139 (438)
Q Consensus        71 ~~~al~~~p~----~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~l~~~~eA~~~  139 (438)
                      |.+++.+.+.    ...+..+..+|.+|+..|+|++|+.+|.+++.+.+.       ..++.++|.+|..+|++++|+.+
T Consensus       170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  249 (406)
T 3sf4_A          170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  249 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            9998875221    122445889999999999999999999999998643       45899999999999999999999


Q ss_pred             HHHHhhcCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHH----------HHHHHHHHHH
Q 013696          140 CTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQN------QEI----------KKQLAEVKSL  197 (438)
Q Consensus       140 ~~~al~l~p~~------~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~------~~~----------~~~l~~a~~~  197 (438)
                      +.+++.+.+..      ..++..+|.++..+|++++|+.+|++++.+.+..      ..+          .+++.+|...
T Consensus       250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  329 (406)
T 3sf4_A          250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF  329 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999887765      7889999999999999999999999999986543      111          5667788888


Q ss_pred             HHHHHhhc
Q 013696          198 YEKEVFQK  205 (438)
Q Consensus       198 ~~ka~~~~  205 (438)
                      |.+++...
T Consensus       330 ~~~al~~~  337 (406)
T 3sf4_A          330 AEKHLEIS  337 (406)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88777654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.27  E-value=4.6e-12  Score=126.07  Aligned_cols=112  Identities=13%  Similarity=0.167  Sum_probs=103.9

Q ss_pred             cCCCccchHHHHHhhhc----------------CCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHH
Q 013696           60 SYSRNYDPVSHISSSLM----------------NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN  122 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~----------------~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~  122 (438)
                      ..|+|++|+..|++++.                .+|....+  +.++|.+|++.|+|++|+.+|+++++++|+ +.+|++
T Consensus       235 ~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~--~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  312 (370)
T 1ihg_A          235 KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSC--VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYR  312 (370)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHH--HHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            78999999999999998                55554445  789999999999999999999999999999 999999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Q 013696          123 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED  173 (438)
Q Consensus       123 la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~  173 (438)
                      +|.+|..+|+|++|+.+|++|+.++|++..++..++.++..+++++++...
T Consensus       313 lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          313 RAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.27  E-value=7.5e-12  Score=131.46  Aligned_cols=130  Identities=9%  Similarity=-0.009  Sum_probs=121.4

Q ss_pred             ccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc--cHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc-CHHHHHHH
Q 013696           64 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQK--KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-RFQEAEDD  139 (438)
Q Consensus        64 ~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g--~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~-~~~eA~~~  139 (438)
                      +++|+..+++++..+|++..+  |..+|+++...|  +|++|+.++.++++++|. ..+|.+++.++..+| .+++++++
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~a--W~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~  166 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGT--WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  166 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH
Confidence            899999999999999999999  779999999999  779999999999999999 999999999999999 99999999


Q ss_pred             HHHHhhcCCccHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013696          140 CTEALNLDDRYIKAYSRRATARKEL--------------GKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (438)
Q Consensus       140 ~~~al~l~p~~~~a~~~lg~a~~~l--------------g~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  195 (438)
                      +.++|+.+|.+..||+.+|.++..+              +.+++|++++.+|+.++|++..+|..+.-+.
T Consensus       167 ~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll  236 (567)
T 1dce_A          167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL  236 (567)
T ss_dssp             HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence            9999999999999999999999986              6689999999999999999998876655433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.26  E-value=4.1e-11  Score=114.01  Aligned_cols=125  Identities=15%  Similarity=0.090  Sum_probs=112.0

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC-CC--HHHHHHHHHHHHHhcCHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-PT--AVAYANRAMAYLKLRRFQEA  136 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~-p~--~~~~~~la~~~~~l~~~~eA  136 (438)
                      ..|+|++|.+.|..++...|... +  .+.+|..+++.++|++|+.+|..++... |.  ..+++++|.++..+|++++|
T Consensus       114 ~~g~y~eA~~~l~~~~~~~p~~~-~--~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eA  190 (282)
T 4f3v_A          114 AQGNYADAMEALEAAPVAGSEHL-V--AWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEA  190 (282)
T ss_dssp             HHTCHHHHHHHHTSSCCTTCHHH-H--HHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HCCCHHHHHHHHHHHHhcCCchH-H--HHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHH
Confidence            67999999999999999888766 5  7899999999999999999999888764 32  45899999999999999999


Q ss_pred             HHHHHHHhhcC--Cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696          137 EDDCTEALNLD--DR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (438)
Q Consensus       137 ~~~~~~al~l~--p~-~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~  188 (438)
                      +.+|++++...  |. .+.+++++|.++..+|+.++|...|++++..+|+ ..+.
T Consensus       191 l~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~  244 (282)
T 4f3v_A          191 ERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA  244 (282)
T ss_dssp             HHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred             HHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence            99999998654  65 6789999999999999999999999999999998 6553

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=3e-11  Score=101.66  Aligned_cols=107  Identities=13%  Similarity=0.061  Sum_probs=96.8

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCCC---hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHH
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEEST---PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK  129 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~---~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~  129 (438)
                      .|..| ..|++++|+..|++++..+|++   ..+  +..+|.+|+..|+|++|+.+|.+++.++|. ..+++++|.+|..
T Consensus        34 ~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  111 (148)
T 2dba_A           34 EGNELFKCGDYGGALAAYTQALGLDATPQDQAVL--HRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK  111 (148)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHH--HHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH
Confidence            33334 8899999999999999999876   444  779999999999999999999999999998 9999999999999


Q ss_pred             hcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 013696          130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE  163 (438)
Q Consensus       130 l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~  163 (438)
                      +|++++|+.+|.+++.++|++..++..++.+...
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          112 LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            9999999999999999999999999888877543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.26  E-value=1.7e-11  Score=109.10  Aligned_cols=145  Identities=15%  Similarity=0.050  Sum_probs=109.5

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC------CC-HHHHHHHHHHHHHhc
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS------PT-AVAYANRAMAYLKLR  131 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~------p~-~~~~~~la~~~~~l~  131 (438)
                      +..|++++|...++.... +|. ..+..+..+|.+++..|+|++|+.+|.+++.+.      +. ..++.++|.+|..+|
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-HPA-TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-STT-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccHHHHHHHHHHhcC-ChH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence            356889999995444433 332 234558899999999999999999999999953      22 788999999999999


Q ss_pred             CHHHHHHHHHHHhhc------CC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHH--------------H
Q 013696          132 RFQEAEDDCTEALNL------DD-RYIKAYSRRATARKELGKLKESIEDSEFALRLEP--QNQEI--------------K  188 (438)
Q Consensus       132 ~~~eA~~~~~~al~l------~p-~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P--~~~~~--------------~  188 (438)
                      ++++|+.++.+++.+      ++ ....+++++|.++..+|++++|+.++++++.+.+  ++...              .
T Consensus        81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  160 (203)
T 3gw4_A           81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE  160 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence            999999999999988      33 3466799999999999999999999999997743  22221              3


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 013696          189 KQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       189 ~~l~~a~~~~~ka~~~~  205 (438)
                      +++.+|...+.+++.+.
T Consensus       161 g~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          161 KNLLEAQQHWLRARDIF  177 (203)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHH
Confidence            45667777777766544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.25  E-value=1.2e-10  Score=113.68  Aligned_cols=124  Identities=10%  Similarity=0.012  Sum_probs=116.9

Q ss_pred             ccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhcc--HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC-HHHHHHH
Q 013696           64 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKK--FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR-FQEAEDD  139 (438)
Q Consensus        64 ~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~--y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~-~~eA~~~  139 (438)
                      +.+++.++..++..+|.+..+  |..++.++...|.  +++++.++.++++++|. ..+|.+++.+...+|. +++++.+
T Consensus        90 l~~EL~~~~~~L~~~PKny~a--W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGT--WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHH--HHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            688999999999999999999  7799999999984  99999999999999998 9999999999999998 6999999


Q ss_pred             HHHHhhcCCccHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCCHHHHH
Q 013696          140 CTEALNLDDRYIKAYSRRATARKEL--------------GKLKESIEDSEFALRLEPQNQEIKK  189 (438)
Q Consensus       140 ~~~al~l~p~~~~a~~~lg~a~~~l--------------g~~~eA~~~~~~al~l~P~~~~~~~  189 (438)
                      +.++|..+|.|..||+.++.++..+              +.++++++++.+++.++|+|..++.
T Consensus       168 ~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~  231 (331)
T 3dss_A          168 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF  231 (331)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            9999999999999999999999988              5689999999999999999998863

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.24  E-value=1.7e-12  Score=123.59  Aligned_cols=168  Identities=18%  Similarity=0.160  Sum_probs=104.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChh----HHHH
Q 013696           13 QGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD----ATSE   87 (438)
Q Consensus        13 ~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~----a~~~   87 (438)
                      ...+...++|++++....+.+......   ...+.....+..+|..| ..|++++|+..+.+++.+.+....    +..+
T Consensus        50 ~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  126 (338)
T 3ro2_A           50 GNAYFYLHDYAKALEYHHHDLTLARTI---GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARAL  126 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhcc---cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence            444444555666655555444322100   00011112223344445 677788888888777765433222    3346


Q ss_pred             HHHHHHHHHhcc--------------------HHHHHHHHHHHhccC------CC-HHHHHHHHHHHHHhcCHHHHHHHH
Q 013696           88 KELGNECFKQKK--------------------FKEAIDCYSRSIALS------PT-AVAYANRAMAYLKLRRFQEAEDDC  140 (438)
Q Consensus        88 ~~~g~~~~~~g~--------------------y~~Ai~~y~~al~~~------p~-~~~~~~la~~~~~l~~~~eA~~~~  140 (438)
                      ..+|.++...|+                    +++|+.+|.+++.+.      +. ..++.++|.+|..+|++++|+..+
T Consensus       127 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  206 (338)
T 3ro2_A          127 YNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH  206 (338)
T ss_dssp             HHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            677788888887                    777877777777652      11 556777788888888888888888


Q ss_pred             HHHhhcCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696          141 TEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       141 ~~al~l~p~~------~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~  183 (438)
                      .+++.+.+..      ..++..+|.++...|++++|+..+++++.+.+.
T Consensus       207 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  255 (338)
T 3ro2_A          207 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ  255 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            8877765432      236777788888888888888888887777554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.24  E-value=7.7e-12  Score=124.17  Aligned_cols=151  Identities=15%  Similarity=0.119  Sum_probs=126.3

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCCChh--HHHHHHHHHHHHHhccHHHHHHHHHHHhcc------CCC-HHHHHHHH
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIAL------SPT-AVAYANRA  124 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~--a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~------~p~-~~~~~~la  124 (438)
                      .|..| ..|++++|+..|++++...|.+..  +..+..+|.+|+..|+|++|+.+|.+++.+      .|. ..++.++|
T Consensus        54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  133 (411)
T 4a1s_A           54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG  133 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence            34444 789999999999999999988764  345889999999999999999999999998      344 78899999


Q ss_pred             HHHHHhcCHHHHHHHHHHHhhc------CCccHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhhC
Q 013696          125 MAYLKLRRFQEAEDDCTEALNL------DDRYIKAYSRRATARKELGK-----------------LKESIEDSEFALRLE  181 (438)
Q Consensus       125 ~~~~~l~~~~eA~~~~~~al~l------~p~~~~a~~~lg~a~~~lg~-----------------~~eA~~~~~~al~l~  181 (438)
                      .+|..+|++++|+.+|.+++.+      .+....++..+|.+|..+|+                 +++|+.+|++++.+.
T Consensus       134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~  213 (411)
T 4a1s_A          134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM  213 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998      56778899999999999999                 999999999999875


Q ss_pred             CCC---H---HH----------HHHHHHHHHHHHHHHhhc
Q 013696          182 PQN---Q---EI----------KKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       182 P~~---~---~~----------~~~l~~a~~~~~ka~~~~  205 (438)
                      +..   .   .+          .+++.+|...|.+++...
T Consensus       214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  253 (411)
T 4a1s_A          214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA  253 (411)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            311   1   11          345667777777766554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.24  E-value=1.5e-10  Score=113.61  Aligned_cols=147  Identities=6%  Similarity=-0.036  Sum_probs=132.2

Q ss_pred             CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc-cHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh-c-CHHHHH
Q 013696           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK-KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL-R-RFQEAE  137 (438)
Q Consensus        62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g-~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l-~-~~~eA~  137 (438)
                      +..++|+..+.++|.++|.+..+  |+.+|.++...| .+++++.++..++..+|. ..+|..|+.++..+ + ++++++
T Consensus        68 e~se~AL~lt~~~L~~nP~~yta--Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL  145 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTV--WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI  145 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred             CCCHHHHHHHHHHHHhCchhHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence            45578999999999999999999  779999999999 599999999999999999 99999999999998 8 999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCHHHHHH-----------------HH
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARKELGKLK--------ESIEDSEFALRLEPQNQEIKKQ-----------------LA  192 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~--------eA~~~~~~al~l~P~~~~~~~~-----------------l~  192 (438)
                      ..+.+++.++|.|..+|+.++.++..+|.++        ++++++.+++.++|.|..++..                 +.
T Consensus       146 ~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~  225 (349)
T 3q7a_A          146 EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQ  225 (349)
T ss_dssp             HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHH
Confidence            9999999999999999999999999999998        9999999999999999988433                 45


Q ss_pred             HHHHHHHHHHhhchhhhh
Q 013696          193 EVKSLYEKEVFQKASKTL  210 (438)
Q Consensus       193 ~a~~~~~ka~~~~~~~~~  210 (438)
                      +++..+.+++..++.+..
T Consensus       226 eELe~~~~aI~~~P~n~S  243 (349)
T 3q7a_A          226 DELIYILKSIHLIPHNVS  243 (349)
T ss_dssp             HHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHhCCCCHH
Confidence            666677777777765543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.24  E-value=7.4e-11  Score=97.29  Aligned_cols=105  Identities=13%  Similarity=0.012  Sum_probs=93.3

Q ss_pred             cCCCccchHHHHHhhhcCCCCCh---hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcC
Q 013696           60 SYSRNYDPVSHISSSLMNEESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR  132 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~---~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~  132 (438)
                      ..|++++|+..|.+++..+|++.   .+  ++.+|.+++..|+|++|+.+|.+++..+|+    +.+++++|.+|..+|+
T Consensus        14 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~--~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~   91 (129)
T 2xev_A           14 KNGKYDDASQLFLSFLELYPNGVYTPNA--LYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGK   91 (129)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSSSTTHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC
T ss_pred             HhCCHHHHHHHHHHHHHHCCCCcccHHH--HHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCC
Confidence            78999999999999999999887   45  779999999999999999999999999987    6779999999999999


Q ss_pred             HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Q 013696          133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGK  166 (438)
Q Consensus       133 ~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~  166 (438)
                      +++|+..|++++...|++..+...+..+....++
T Consensus        92 ~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A           92 NTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence            9999999999999999998887766655554443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.23  E-value=1.3e-11  Score=104.68  Aligned_cols=124  Identities=18%  Similarity=0.196  Sum_probs=98.0

Q ss_pred             cCCCccchHHHHHhhhcCCCCCh----hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYL  128 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~----~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~  128 (438)
                      ..|++++|+.++.+++...+...    .+..+..+|.+++..|+|++|+.+|.+++.+.+.       ..++.++|.++.
T Consensus        21 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  100 (164)
T 3ro3_A           21 LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT  100 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            67888899999988887653322    2344778899999999999999999998887432       567888899999


Q ss_pred             HhcCHHHHHHHHHHHhhcCC------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696          129 KLRRFQEAEDDCTEALNLDD------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       129 ~l~~~~eA~~~~~~al~l~p------~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~  183 (438)
                      .+|++++|+..+.+++.+.+      ....++..+|.++..+|++++|+.++++++.+...
T Consensus       101 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          101 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            99999999999999887632      23567888899999999999999999988877544

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.22  E-value=7.4e-11  Score=96.03  Aligned_cols=100  Identities=12%  Similarity=0.113  Sum_probs=87.6

Q ss_pred             cchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013696           65 YDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEA  143 (438)
Q Consensus        65 ~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~a  143 (438)
                      .+|+..|.+++..+|++..+  ++.+|.+|+..|+|++|+.+|.+++.++|. ..+|+++|.+|..+|++++|+..|+++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~--~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLL--RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            57899999999999998887  779999999999999999999999999999 999999999999999999999999999


Q ss_pred             hhcCCcc--HHHHHHHHHHHHHcCC
Q 013696          144 LNLDDRY--IKAYSRRATARKELGK  166 (438)
Q Consensus       144 l~l~p~~--~~a~~~lg~a~~~lg~  166 (438)
                      +.++|..  ..+...+...+..+|+
T Consensus        80 l~~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           80 LAAAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHhccccccHHHHHHHHHHHHHhcc
Confidence            9998853  4555555555554443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.20  E-value=1.5e-10  Score=105.52  Aligned_cols=113  Identities=10%  Similarity=-0.055  Sum_probs=52.1

Q ss_pred             CccchHHHHHhhhcCCCCChhHHHHHHHHHHHHH----hccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHH----hc
Q 013696           63 RNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLK----LR  131 (438)
Q Consensus        63 ~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~----~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~~----l~  131 (438)
                      ++++|+.+|+++...  .++.+  ++.+|.+|..    .+++++|+.+|.+++...+.   +.+++++|.+|..    .+
T Consensus        68 ~~~~A~~~~~~A~~~--g~~~a--~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~  143 (212)
T 3rjv_A           68 DYPQARQLAEKAVEA--GSKSG--EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE  143 (212)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHH--HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC
T ss_pred             CHHHHHHHHHHHHHC--CCHHH--HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC
Confidence            444455555444332  23333  3344444444    44455555555555444442   4444445555444    44


Q ss_pred             CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhh
Q 013696          132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKEL-G-----KLKESIEDSEFALRL  180 (438)
Q Consensus       132 ~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l-g-----~~~eA~~~~~~al~l  180 (438)
                      ++++|+.+|++++.+ +.++.+++++|.+|... |     ++++|+.+|+++...
T Consensus       144 d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          144 DDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             CHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            455555555555444 33344444455444432 2     444555555544444

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.20  E-value=8.3e-11  Score=107.22  Aligned_cols=145  Identities=8%  Similarity=-0.084  Sum_probs=121.2

Q ss_pred             CCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc----cHHHHHHHHHHHhccCCC-HHHHHHHHHH
Q 013696           53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK----KFKEAIDCYSRSIALSPT-AVAYANRAMA  126 (438)
Q Consensus        53 ~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g----~y~~Ai~~y~~al~~~p~-~~~~~~la~~  126 (438)
                      ..+|..| ..+++++|+.+|++++...  ++.+  ++.+|.+|.. +    ++++|+.+|.+++.  +. +.+++++|.+
T Consensus        22 ~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a--~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~   94 (212)
T 3rjv_A           22 YYLADTWVSSGDYQKAEYWAQKAAAQG--DGDA--LALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARV   94 (212)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHH--HHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHH--HHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHH
Confidence            3345555 6789999999999998764  5666  7799999998 7    99999999999965  44 8999999999


Q ss_pred             HHH----hcCHHHHHHHHHHHhhcCC--ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHH-------
Q 013696          127 YLK----LRRFQEAEDDCTEALNLDD--RYIKAYSRRATARKE----LGKLKESIEDSEFALRLEPQNQEIKK-------  189 (438)
Q Consensus       127 ~~~----l~~~~eA~~~~~~al~l~p--~~~~a~~~lg~a~~~----lg~~~eA~~~~~~al~l~P~~~~~~~-------  189 (438)
                      |..    .+++++|+.+|++++..++  .++.+++++|.+|..    .+++++|+.+|++++.+ |+++.+..       
T Consensus        95 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~  173 (212)
T 3rjv_A           95 LVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ  173 (212)
T ss_dssp             HTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred             HHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence            998    8899999999999999998  569999999999999    88999999999999999 55554421       


Q ss_pred             ---------HHHHHHHHHHHHHhhc
Q 013696          190 ---------QLAEVKSLYEKEVFQK  205 (438)
Q Consensus       190 ---------~l~~a~~~~~ka~~~~  205 (438)
                               ++.+|..+|+++....
T Consensus       174 ~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          174 QGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHcC
Confidence                     4667777777776654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.19  E-value=2.2e-10  Score=118.69  Aligned_cols=143  Identities=9%  Similarity=-0.001  Sum_probs=125.7

Q ss_pred             CCCcc-------chHHHHHhhhc-CCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-H-HHHHHHHHHHHHh
Q 013696           61 YSRNY-------DPVSHISSSLM-NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A-VAYANRAMAYLKL  130 (438)
Q Consensus        61 ~g~~~-------eAi~~~~~al~-~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~-~~~~~la~~~~~l  130 (438)
                      .|+++       +|+..|++++. ..|++...  |..+|..+...|++++|...|++++++.|. + .+|.++|.++...
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l--~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  369 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLL--YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA  369 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh
Confidence            68887       99999999997 78988877  779999999999999999999999999997 4 6899999999999


Q ss_pred             cCHHHHHHHHHHHhhcCCccHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHH----------HHHHHHHHHHH
Q 013696          131 RRFQEAEDDCTEALNLDDRYIKAYSRRATA-RKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYE  199 (438)
Q Consensus       131 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~a-~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~  199 (438)
                      |++++|...|.+|+...|.....+...|.+ +...|++++|...|++++++.|+++.++          ++..+|...|+
T Consensus       370 ~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~  449 (530)
T 2ooe_A          370 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE  449 (530)
T ss_dssp             HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence            999999999999999999888888777765 4469999999999999999999998874          44566777777


Q ss_pred             HHHhhc
Q 013696          200 KEVFQK  205 (438)
Q Consensus       200 ka~~~~  205 (438)
                      +++...
T Consensus       450 ~al~~~  455 (530)
T 2ooe_A          450 RVLTSG  455 (530)
T ss_dssp             HHHHSC
T ss_pred             HHHhcc
Confidence            777653

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.19  E-value=3e-11  Score=114.83  Aligned_cols=146  Identities=17%  Similarity=0.185  Sum_probs=120.3

Q ss_pred             cCCCccchHHHHHhhhcCCCCChh--HHHHHHHHHHHHHhccHHHHHHHHHHHhccC------CC-HHHHHHHHHHHHHh
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIALS------PT-AVAYANRAMAYLKL  130 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~--a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~------p~-~~~~~~la~~~~~l  130 (438)
                      ..|++++|+..|++++...|.+..  +..+..+|.+++..|+|++|+.+|.+++.+.      |. ..++.++|.+|..+
T Consensus        17 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~   96 (338)
T 3ro2_A           17 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL   96 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence            789999999999999999988764  3457899999999999999999999999873      33 78899999999999


Q ss_pred             cCHHHHHHHHHHHhhcCCcc------HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhhCCC-
Q 013696          131 RRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGK--------------------LKESIEDSEFALRLEPQ-  183 (438)
Q Consensus       131 ~~~~eA~~~~~~al~l~p~~------~~a~~~lg~a~~~lg~--------------------~~eA~~~~~~al~l~P~-  183 (438)
                      |++++|+..+.+++.+.+..      ..++..+|.++..+|+                    +++|+..+++++.+.+. 
T Consensus        97 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~  176 (338)
T 3ro2_A           97 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL  176 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999886543      4589999999999999                    99999999999877421 


Q ss_pred             --C---HHH----------HHHHHHHHHHHHHHHhhc
Q 013696          184 --N---QEI----------KKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       184 --~---~~~----------~~~l~~a~~~~~ka~~~~  205 (438)
                        .   ..+          .+++.+|...+.+++...
T Consensus       177 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  213 (338)
T 3ro2_A          177 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA  213 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence              1   111          345566666666665543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.19  E-value=8e-11  Score=115.48  Aligned_cols=174  Identities=14%  Similarity=0.047  Sum_probs=142.8

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCC-CccchHHHHHhhhcCCCCChhHHHHH
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYS-RNYDPVSHISSSLMNEESTPDATSEK   88 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g-~~~eAi~~~~~al~~~p~~~~a~~~~   88 (438)
                      .++..++..+.-++++...++.+...+...         ......+..+ .+| .+++++..+..+|..+|++..+  |.
T Consensus        59 ~~r~~~~~~e~se~AL~lt~~~L~~nP~~y---------taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~a--W~  127 (349)
T 3q7a_A           59 YFRAIAAKEEKSERALELTEIIVRMNPAHY---------TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQV--WH  127 (349)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHH--HH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhCchhH---------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH--HH
Confidence            334444555555677888888877665111         1111111122 445 5999999999999999999999  77


Q ss_pred             HHHHHHHHh-c-cHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHH--------HHHHHHHHHhhcCCccHHHHHHH
Q 013696           89 ELGNECFKQ-K-KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ--------EAEDDCTEALNLDDRYIKAYSRR  157 (438)
Q Consensus        89 ~~g~~~~~~-g-~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~--------eA~~~~~~al~l~p~~~~a~~~l  157 (438)
                      .++.++... + ++++++.++.+++..+|. ..+|..++.++..++.++        +++.++++++..+|.|..||+.+
T Consensus       128 hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R  207 (349)
T 3q7a_A          128 HRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWR  207 (349)
T ss_dssp             HHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999999988 7 999999999999999998 999999999999999888        99999999999999999999999


Q ss_pred             HHHHHHcCC-------HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013696          158 ATARKELGK-------LKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (438)
Q Consensus       158 g~a~~~lg~-------~~eA~~~~~~al~l~P~~~~~~~~l~~a~  195 (438)
                      +.++..+|+       ++++++++.+++.++|+|..++..+.-.+
T Consensus       208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll  252 (349)
T 3q7a_A          208 WYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFL  252 (349)
T ss_dssp             HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999997       79999999999999999999987665443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.16  E-value=3e-11  Score=98.94  Aligned_cols=104  Identities=13%  Similarity=0.157  Sum_probs=94.6

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC--------HHHHHHHHHHHHHhc
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAMAYLKLR  131 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--------~~~~~~la~~~~~l~  131 (438)
                      ..|++++|+..|.+++..+|.+..+  +..+|.+++..|+|++|+.+|.+++.+.|.        ..+++++|.+|..+|
T Consensus        16 ~~~~~~~A~~~~~~a~~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~   93 (131)
T 1elr_A           16 KKKDFDTALKHYDKAKELDPTNMTY--ITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEE   93 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HhcCHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhc
Confidence            7899999999999999999988877  779999999999999999999999999764        678999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Q 013696          132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK  166 (438)
Q Consensus       132 ~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~  166 (438)
                      ++++|+.+|.+++.++| +...+..++.++..+++
T Consensus        94 ~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           94 KYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            99999999999999999 68888888888776543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.16  E-value=2.9e-10  Score=87.62  Aligned_cols=80  Identities=33%  Similarity=0.488  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 013696           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL  164 (438)
Q Consensus        86 ~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l  164 (438)
                      .+..+|.+++..|+|++|+.+|.+++.++|. ..+++++|.+|..+|++++|+.+|++++.++|+++.++.++|.++..+
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~   90 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ   90 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            3667777777777777777777777777777 777777777777777777777777777777777777777777777665


Q ss_pred             C
Q 013696          165 G  165 (438)
Q Consensus       165 g  165 (438)
                      |
T Consensus        91 g   91 (91)
T 1na3_A           91 G   91 (91)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.15  E-value=4.3e-11  Score=106.50  Aligned_cols=130  Identities=12%  Similarity=0.056  Sum_probs=108.2

Q ss_pred             CCCCCcC-cCCCccchHHHHHhhhcCCC----CChhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc------CC-C-HHH
Q 013696           53 KPSPSGN-SYSRNYDPVSHISSSLMNEE----STPDATSEKELGNECFKQKKFKEAIDCYSRSIAL------SP-T-AVA  119 (438)
Q Consensus        53 ~~~~~~y-~~g~~~eAi~~~~~al~~~p----~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~------~p-~-~~~  119 (438)
                      ..+|..| ..|++++|+.+|.+++.+..    ....+..+..+|.++...|++++|+.+|.+++.+      ++ . ..+
T Consensus        30 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  109 (203)
T 3gw4_A           30 FMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASAN  109 (203)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHH
Confidence            4455555 88999999999999998321    1123455889999999999999999999999998      33 2 678


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696          120 YANRAMAYLKLRRFQEAEDDCTEALNLDDR------YIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (438)
Q Consensus       120 ~~~la~~~~~l~~~~eA~~~~~~al~l~p~------~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P  182 (438)
                      +.++|.++..+|++++|+..+.+++.+.+.      ...++..+|.++..+|++++|+.++++++.+..
T Consensus       110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999976422      134578999999999999999999999998864

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.15  E-value=4.9e-11  Score=94.17  Aligned_cols=85  Identities=16%  Similarity=0.329  Sum_probs=57.9

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHhhcCCccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHH
Q 013696          121 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK-AYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK--KQLAEVKSL  197 (438)
Q Consensus       121 ~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~-a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~--~~l~~a~~~  197 (438)
                      +++|.++...|+|++|+..|++++.++|+++. +|+.+|.++..+|++++|+.+|++++.++|++..++  ..+.++...
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~   83 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILNF   83 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            45666667777777777777777777777766 777777777777777777777777777777766665  666666666


Q ss_pred             HHHHHhhc
Q 013696          198 YEKEVFQK  205 (438)
Q Consensus       198 ~~ka~~~~  205 (438)
                      |.+.+...
T Consensus        84 ~~~~~~~~   91 (99)
T 2kc7_A           84 YNKDMYNQ   91 (99)
T ss_dssp             HCCTTHHH
T ss_pred             HHHHhccC
Confidence            66555444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.14  E-value=1.4e-10  Score=91.46  Aligned_cols=90  Identities=17%  Similarity=0.166  Sum_probs=82.7

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHhccCCC-HH-HHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696           88 KELGNECFKQKKFKEAIDCYSRSIALSPT-AV-AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (438)
Q Consensus        88 ~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~-~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg  165 (438)
                      +.+|..++..|+|++|+.+|.++++.+|. +. +++++|.+|..+|++++|+.+|++++.++|++..++++        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            47899999999999999999999999998 88 99999999999999999999999999999999988855        6


Q ss_pred             CHHHHHHHHHHHHhhCCCCH
Q 013696          166 KLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       166 ~~~eA~~~~~~al~l~P~~~  185 (438)
                      .+.+|+..|++++.++|++.
T Consensus        76 ~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHhccCcccc
Confidence            67888999999888888763

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.13  E-value=1.5e-10  Score=97.86  Aligned_cols=121  Identities=17%  Similarity=0.207  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc------
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------  150 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~------  150 (438)
                      +..+..+|.+++..|+|++|+.+|.+++.+.+.       ..++.++|.+|..+|++++|+.++.+++.+.+..      
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            455889999999999999999999999998643       4689999999999999999999999999886543      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HH----H----------HHHHHHHHHHHHHHHhh
Q 013696          151 IKAYSRRATARKELGKLKESIEDSEFALRLEPQN--QE----I----------KKQLAEVKSLYEKEVFQ  204 (438)
Q Consensus       151 ~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~--~~----~----------~~~l~~a~~~~~ka~~~  204 (438)
                      ..+++++|.++..+|++++|+.++++++.+.+..  ..    +          .+++.+|...+.+++..
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999885322  11    1          34555666666665544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.11  E-value=1e-10  Score=93.11  Aligned_cols=97  Identities=14%  Similarity=0.119  Sum_probs=88.7

Q ss_pred             CCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC---HHHHHHHHHHH
Q 013696           52 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAY  127 (438)
Q Consensus        52 ~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~  127 (438)
                      +..+|..| ..|++++|+..|.+++..+|.+..+  +..+|.+++..|+|++|+.+|.++++++|.   ..++.++|.++
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~   86 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY--WLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL   86 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH--HHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence            34455555 8899999999999999999988877  779999999999999999999999999987   78899999999


Q ss_pred             HHh-cCHHHHHHHHHHHhhcCCcc
Q 013696          128 LKL-RRFQEAEDDCTEALNLDDRY  150 (438)
Q Consensus       128 ~~l-~~~~eA~~~~~~al~l~p~~  150 (438)
                      ..+ |++++|+.++++++...|.+
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           87 RYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHhCCHHHHHHHHHHHhhcccCC
Confidence            999 99999999999999999875

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.11  E-value=4.2e-10  Score=107.05  Aligned_cols=117  Identities=14%  Similarity=0.081  Sum_probs=98.7

Q ss_pred             HHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc--HHHHHHHHHHHHHcCC
Q 013696           90 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY--IKAYSRRATARKELGK  166 (438)
Q Consensus        90 ~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~--~~a~~~lg~a~~~lg~  166 (438)
                      ++..+...|+|++|.+.|..++...|. . +++.+|.+++..++|++|+..|+.++...+..  ..+++.+|.++..+|+
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~  186 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL  186 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence            456788899999999999999988888 6 99999999999999999999999888764322  4589999999999999


Q ss_pred             HHHHHHHHHHHHhhC--CC-CHHH----------HHHHHHHHHHHHHHHhhchh
Q 013696          167 LKESIEDSEFALRLE--PQ-NQEI----------KKQLAEVKSLYEKEVFQKAS  207 (438)
Q Consensus       167 ~~eA~~~~~~al~l~--P~-~~~~----------~~~l~~a~~~~~ka~~~~~~  207 (438)
                      +++|+.+|++++.-.  |. ..++          .++..+|...|++++..++.
T Consensus       187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            999999999998654  54 3333          57778999999999888865

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.09  E-value=5.3e-10  Score=115.85  Aligned_cols=139  Identities=14%  Similarity=0.080  Sum_probs=122.9

Q ss_pred             chHHHHHhhhcCCCCChhHHHHHHHHHHHHH-------hccHH-------HHHHHHHHHhc-cCCC-HHHHHHHHHHHHH
Q 013696           66 DPVSHISSSLMNEESTPDATSEKELGNECFK-------QKKFK-------EAIDCYSRSIA-LSPT-AVAYANRAMAYLK  129 (438)
Q Consensus        66 eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~-------~g~y~-------~Ai~~y~~al~-~~p~-~~~~~~la~~~~~  129 (438)
                      .|+..|++++..+|.++.+  |..+|..+..       .|+++       +|+..|.+++. +.|+ ..+|.++|..+..
T Consensus       256 ~a~~~y~~al~~~p~~~~~--w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~  333 (530)
T 2ooe_A          256 RVMFAYEQCLLVLGHHPDI--WYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  333 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            6788999999999999888  7799999886       79987       99999999998 8998 9999999999999


Q ss_pred             hcCHHHHHHHHHHHhhcCCccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-----------HHHHHHHHHH
Q 013696          130 LRRFQEAEDDCTEALNLDDRYI-KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI-----------KKQLAEVKSL  197 (438)
Q Consensus       130 l~~~~eA~~~~~~al~l~p~~~-~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~-----------~~~l~~a~~~  197 (438)
                      .|++++|...|++++.++|.++ .+|..+|.++...|++++|+..|++++...|.....           .++..+|...
T Consensus       334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~  413 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  413 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence            9999999999999999999986 699999999999999999999999999998876443           2335677888


Q ss_pred             HHHHHhhch
Q 013696          198 YEKEVFQKA  206 (438)
Q Consensus       198 ~~ka~~~~~  206 (438)
                      |++++...+
T Consensus       414 ~e~al~~~p  422 (530)
T 2ooe_A          414 FELGLKKYG  422 (530)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHCC
Confidence            888877654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.08  E-value=1.6e-09  Score=83.28  Aligned_cols=80  Identities=34%  Similarity=0.408  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (438)
Q Consensus       117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  196 (438)
                      +.+++++|.++...|++++|+.+|.+++.++|+++.+++.+|.++...|++++|+.+|++++.++|++..++..+..+..
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            77899999999999999999999999999999999999999999999999999999999999999999988777766543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.08  E-value=5.9e-10  Score=88.85  Aligned_cols=71  Identities=15%  Similarity=0.191  Sum_probs=61.8

Q ss_pred             CCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          114 SPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       114 ~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      +|+ +.+++++|.+|..+|+|++|+.+|++++.++|+++.+|+.+|.+|..+|++++|+..|++++.+.|.+
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            566 88899999999999999999999999999999999999999999999999999999999999887643

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.06  E-value=1.6e-09  Score=86.54  Aligned_cols=68  Identities=18%  Similarity=0.207  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      +.+++++|.++...|+|++|+..|++++.++|+++.+|+++|.++..+|++++|+.+|++++.++|++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            56789999999999999999999999999999999999999999999999999999999999999998

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.05  E-value=1.1e-09  Score=107.60  Aligned_cols=145  Identities=10%  Similarity=0.002  Sum_probs=118.4

Q ss_pred             cCCCccchHHHHHhhhcCCCCChh---HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPD---ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLK  129 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~---a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~  129 (438)
                      ..|++++|+..+++++...|....   +..+..+|.+++..|++++|+.+|.+++.+.|.       ..++.++|.++..
T Consensus        26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  105 (373)
T 1hz4_A           26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA  105 (373)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            678999999999999998765532   334779999999999999999999999997653       3557899999999


Q ss_pred             hcCHHHHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HH---------
Q 013696          130 LRRFQEAEDDCTEALNLD--------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ-----EI---------  187 (438)
Q Consensus       130 l~~~~eA~~~~~~al~l~--------p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~-----~~---------  187 (438)
                      .|++++|+..|++++.+.        |....++.++|.++...|++++|...+++++.+.+...     .+         
T Consensus       106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  185 (373)
T 1hz4_A          106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL  185 (373)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence            999999999999999875        44567888999999999999999999999999987531     11         


Q ss_pred             -HHHHHHHHHHHHHHHhh
Q 013696          188 -KKQLAEVKSLYEKEVFQ  204 (438)
Q Consensus       188 -~~~l~~a~~~~~ka~~~  204 (438)
                       .+++.+|...+.+++..
T Consensus       186 ~~g~~~~A~~~l~~a~~~  203 (373)
T 1hz4_A          186 ARGDLDNARSQLNRLENL  203 (373)
T ss_dssp             HHTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence             34555666666665543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.98  E-value=1.9e-09  Score=85.82  Aligned_cols=87  Identities=17%  Similarity=0.246  Sum_probs=72.4

Q ss_pred             CCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc--HHHH
Q 013696           78 EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY--IKAY  154 (438)
Q Consensus        78 ~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~--~~a~  154 (438)
                      +|+++.+  ++.+|.+|+..|+|++|+.+|+++++++|+ +.+|+++|.+|..+|++++|+..|++++.+.|..  ..+.
T Consensus         3 ~p~~~~~--~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~   80 (100)
T 3ma5_A            3 DPEDPFT--RYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL   80 (100)
T ss_dssp             --CCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             CccCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence            5777777  779999999999999999999999999999 9999999999999999999999999999987643  4444


Q ss_pred             HHHHHHHHHcCC
Q 013696          155 SRRATARKELGK  166 (438)
Q Consensus       155 ~~lg~a~~~lg~  166 (438)
                      ..+..++...+.
T Consensus        81 ~~l~~~l~~~~~   92 (100)
T 3ma5_A           81 SELQDAKLKAEG   92 (100)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHccc
Confidence            455555544433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.93  E-value=3.4e-09  Score=109.02  Aligned_cols=119  Identities=9%  Similarity=-0.043  Sum_probs=93.8

Q ss_pred             cCCCccchHHHHHhhhcC-----CCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccC-----CC----HHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMN-----EESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALS-----PT----AVAYANRA  124 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~-----~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~-----p~----~~~~~~la  124 (438)
                      .+|+|++|+..|+++|.+     .|+++. +..+.++|.+|..+|+|++|+.+|.+++.+.     |+    +..+.|+|
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  400 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG  400 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            678889999999888873     344443 5557889999999999999999999988763     32    67788999


Q ss_pred             HHHHHhcCHHHHHHHHHHHhhc-----CCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013696          125 MAYLKLRRFQEAEDDCTEALNL-----DDRY---IKAYSRRATARKELGKLKESIEDSEFAL  178 (438)
Q Consensus       125 ~~~~~l~~~~eA~~~~~~al~l-----~p~~---~~a~~~lg~a~~~lg~~~eA~~~~~~al  178 (438)
                      .+|..+|+|++|+..|++|+.+     .|++   ......++.++..+|+|++|...|.++.
T Consensus       401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~  462 (490)
T 3n71_A          401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR  462 (490)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998865     4554   4456788888888888888888887763

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.89  E-value=1.9e-08  Score=85.23  Aligned_cols=111  Identities=12%  Similarity=-0.007  Sum_probs=100.4

Q ss_pred             CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----hcCHHHHH
Q 013696           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK----LRRFQEAE  137 (438)
Q Consensus        62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~----l~~~~eA~  137 (438)
                      +++++|+.+|+++....  ++.+  .  +|..|...+.+++|+.+|+++.+. .++.+++++|.+|..    .+++++|+
T Consensus         9 ~d~~~A~~~~~~aa~~g--~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN--EMFG--C--LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCC--CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            46889999999999876  4455  3  899999999999999999999986 348999999999999    89999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLE  181 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~~----lg~~~eA~~~~~~al~l~  181 (438)
                      .+|++|...  .++.+++++|.+|..    .+++++|+.+|+++.+..
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            999999987  679999999999999    999999999999999884

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.86  E-value=4e-09  Score=107.43  Aligned_cols=126  Identities=10%  Similarity=-0.004  Sum_probs=96.3

Q ss_pred             CCCCCcC-cCC---CccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHh----ccHHHHHHHHHHHhccCCC-HHHHHHH
Q 013696           53 KPSPSGN-SYS---RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ----KKFKEAIDCYSRSIALSPT-AVAYANR  123 (438)
Q Consensus        53 ~~~~~~y-~~g---~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~----g~y~~Ai~~y~~al~~~p~-~~~~~~l  123 (438)
                      ..+|..| ..|   ++.+|+.+|+++....+.....  ++.+|.+|...    +++++|+.+|+++.   |. +.+++++
T Consensus       180 ~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~--~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L  254 (452)
T 3e4b_A          180 VELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQR--VDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL  254 (452)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHH--HHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred             HHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence            3444455 566   7888888888888887665554  56888888665    68888888888887   65 8888888


Q ss_pred             HHH-H--HHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHH
Q 013696          124 AMA-Y--LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG-----KLKESIEDSEFALRLEPQNQEIKK  189 (438)
Q Consensus       124 a~~-~--~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg-----~~~eA~~~~~~al~l~P~~~~~~~  189 (438)
                      |.+ |  ...+++++|+.+|++++..  .++.+++++|.+|. .|     ++++|+.+|+++.   |+++.+..
T Consensus       255 g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~  322 (452)
T 3e4b_A          255 AQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADY  322 (452)
T ss_dssp             HHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHH
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHH
Confidence            888 4  4677888888888888865  47888888888887 55     8888888888888   77777643

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.85  E-value=1.3e-08  Score=103.59  Aligned_cols=166  Identities=9%  Similarity=-0.017  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcCc-----CCCccchHHHHHhhhcCCCCChhHHHHHHHHHH-H
Q 013696           21 DWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNS-----YSRNYDPVSHISSSLMNEESTPDATSEKELGNE-C   94 (438)
Q Consensus        21 ~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~-----~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~-~   94 (438)
                      ++++++....+.....+...         ..+..+|..|.     .+++++|+.+|+++.   |.++.+  ++.+|.+ +
T Consensus       194 ~~~~A~~~~~~aa~~g~~~a---------~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a--~~~Lg~~~~  259 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTVTA---------QRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPAS--WVSLAQLLY  259 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCSCH---------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHH--HHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHH---------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHH--HHHHHHHHH
Confidence            66777776666665443111         01122444442     268999999999998   777888  6799998 4


Q ss_pred             --HHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhc-----CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH----
Q 013696           95 --FKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR-----RFQEAEDDCTEALNLDDRYIKAYSRRATARKE----  163 (438)
Q Consensus        95 --~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~-----~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~----  163 (438)
                        ...+++++|+.+|+++++.. .+.+++++|.+|. .|     ++++|+.+|+++.   +.++.+++++|.+|..    
T Consensus       260 ~~~~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~  334 (452)
T 3e4b_A          260 DFPELGDVEQMMKYLDNGRAAD-QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLG  334 (452)
T ss_dssp             HSGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTS
T ss_pred             hCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCC
Confidence              56899999999999998654 4899999999998 56     9999999999999   8999999999999887    


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHH------------HHHHHHHHHHHHHHHhhc
Q 013696          164 LGKLKESIEDSEFALRLEPQNQEI------------KKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       164 lg~~~eA~~~~~~al~l~P~~~~~------------~~~l~~a~~~~~ka~~~~  205 (438)
                      ..++++|+.+|+++..........            ..++.+|..+|.++....
T Consensus       335 ~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g  388 (452)
T 3e4b_A          335 KVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD  388 (452)
T ss_dssp             SCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred             CcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence            349999999999998865433322            124567788888877655

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.82  E-value=5.1e-08  Score=99.76  Aligned_cols=113  Identities=18%  Similarity=0.061  Sum_probs=60.0

Q ss_pred             CCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHh-----ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhc---C
Q 013696           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ-----KKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR---R  132 (438)
Q Consensus        61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~-----g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~---~  132 (438)
                      .+++++|+.+|+++....  ++.+  ++.+|.+|...     +++++|+.+|.++++..+ +.+++++|.+|...|   +
T Consensus       272 ~~d~~~A~~~~~~a~~~~--~~~a--~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~y~~~g~~~~  346 (490)
T 2xm6_A          272 AKEPLKALEWYRKSAEQG--NSDG--QYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD-ATAQANLGAIYFRLGSEEE  346 (490)
T ss_dssp             SCCHHHHHHHHHHHHTTT--CHHH--HHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHSCCHHH
T ss_pred             CCCHHHHHHHHHHHHHcC--CHHH--HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCccc
Confidence            455566666666655432  3333  44555555554     555555555555555421 445555555555533   5


Q ss_pred             HHHHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 013696          133 FQEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRL  180 (438)
Q Consensus       133 ~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~----lg~~~eA~~~~~~al~l  180 (438)
                      +++|+.+|++++..  .++.+++++|.+|..    .+++++|+.+|++++..
T Consensus       347 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~  396 (490)
T 2xm6_A          347 HKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ  396 (490)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence            55555555555554  345555555555555    55555555555555554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.81  E-value=1.4e-08  Score=99.43  Aligned_cols=161  Identities=11%  Similarity=-0.014  Sum_probs=124.3

Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCCh----hHHHHHHHHH
Q 013696           18 DLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGN   92 (438)
Q Consensus        18 ~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~----~a~~~~~~g~   92 (438)
                      ..+++++++....+.+...+ ...   .......+..+|..| ..|++++|+..+.+++.+.+...    .+..+..+|.
T Consensus        26 ~~g~~~~A~~~~~~al~~~~-~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  101 (373)
T 1hz4_A           26 NDGNPDEAERLAKLALEELP-PGW---FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE  101 (373)
T ss_dssp             HTTCHHHHHHHHHHHHHTCC-TTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHcCC-CCc---hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            34567777777777776442 110   000111223344445 78999999999999998654432    2344678999


Q ss_pred             HHHHhccHHHHHHHHHHHhccC--------CC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc-----cHHHHHHHH
Q 013696           93 ECFKQKKFKEAIDCYSRSIALS--------PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR-----YIKAYSRRA  158 (438)
Q Consensus        93 ~~~~~g~y~~Ai~~y~~al~~~--------p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~-----~~~a~~~lg  158 (438)
                      +++..|+|++|+.+|.+++.+.        |. ..++.++|.+|...|++++|+..+.+++.+.+.     ...++..+|
T Consensus       102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  181 (373)
T 1hz4_A          102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  181 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence            9999999999999999999875        33 667899999999999999999999999988764     357899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCC
Q 013696          159 TARKELGKLKESIEDSEFALRLEP  182 (438)
Q Consensus       159 ~a~~~lg~~~eA~~~~~~al~l~P  182 (438)
                      .++...|++++|...+++++.+.+
T Consensus       182 ~~~~~~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          182 QCSLARGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999998843

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.81  E-value=4.9e-08  Score=100.40  Aligned_cols=100  Identities=11%  Similarity=0.041  Sum_probs=85.7

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHhccC-----CC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-----CCc---c
Q 013696           88 KELGNECFKQKKFKEAIDCYSRSIALS-----PT----AVAYANRAMAYLKLRRFQEAEDDCTEALNL-----DDR---Y  150 (438)
Q Consensus        88 ~~~g~~~~~~g~y~~Ai~~y~~al~~~-----p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l-----~p~---~  150 (438)
                      ...+..+..+|+|++|+..|.+++++.     |+    +..+.|+|.+|..+|+|++|+.++++++.+     .|+   -
T Consensus       313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  392 (490)
T 3n71_A          313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL  392 (490)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            345556778999999999999999863     33    678999999999999999999999999966     344   4


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHH
Q 013696          151 IKAYSRRATARKELGKLKESIEDSEFALRL-----EPQNQEI  187 (438)
Q Consensus       151 ~~a~~~lg~a~~~lg~~~eA~~~~~~al~l-----~P~~~~~  187 (438)
                      ...++++|.+|..+|+|++|+..|++|+.+     .|+++..
T Consensus       393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~  434 (490)
T 3n71_A          393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT  434 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence            567999999999999999999999999976     4777765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.79  E-value=3.6e-08  Score=110.21  Aligned_cols=140  Identities=8%  Similarity=0.084  Sum_probs=84.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL   90 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~   90 (438)
                      +.-++..+++|+++++...+.              .....+..+|.++ ..|++++|+..|.++     +++.+  +...
T Consensus      1082 ~~VLie~i~nldrAiE~Aerv--------------n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~sa--y~eV 1140 (1630)
T 1xi4_A         1082 VQVLIEHIGNLDRAYEFAERC--------------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSS--YMEV 1140 (1630)
T ss_pred             HHHHHHHHhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHH--HHHH
Confidence            344555666666665544321              1122445666666 777788888887665     44455  5577


Q ss_pred             HHHHHHhccHHHHHHHHHHHhccCCC----------------------------HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 013696           91 GNECFKQKKFKEAIDCYSRSIALSPT----------------------------AVAYANRAMAYLKLRRFQEAEDDCTE  142 (438)
Q Consensus        91 g~~~~~~g~y~~Ai~~y~~al~~~p~----------------------------~~~~~~la~~~~~l~~~~eA~~~~~~  142 (438)
                      |.++.+.|+|++|+++|..+++..+.                            ...|.++|.++...|+|++|..+|.+
T Consensus      1141 a~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A         1141 VQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence            77777777777777777666644421                            12344566666666666666666666


Q ss_pred             HhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696          143 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL  180 (438)
Q Consensus       143 al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l  180 (438)
                      |        ..|.++|.+|.++|+|++|++.+++|...
T Consensus      1221 A--------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A         1221 V--------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred             h--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence            4        35666666666666666666666665433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.78  E-value=5.4e-08  Score=99.59  Aligned_cols=136  Identities=17%  Similarity=0.027  Sum_probs=111.3

Q ss_pred             CCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHH----hccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-----c
Q 013696           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKL-----R  131 (438)
Q Consensus        61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~----~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l-----~  131 (438)
                      .+++++|+.+|++++...  +..+  ++.+|.+|..    .+++++|+.+|+++++.. .+.+++++|.+|...     +
T Consensus       236 ~~~~~~A~~~~~~a~~~~--~~~a--~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~~~~g~~~  310 (490)
T 2xm6_A          236 TQDYTQSRVLFSQSAEQG--NSIA--QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-NSDGQYYLAHLYDKGAEGVAK  310 (490)
T ss_dssp             CCCHHHHHHHHHHHHTTT--CHHH--HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHCBTTBCC
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHH--HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCCcC
Confidence            788999999999998764  4455  6689999998    899999999999998762 378889999999988     8


Q ss_pred             CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHH--------------HHHHHH
Q 013696          132 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELG---KLKESIEDSEFALRLEPQNQEIK--------------KQLAEV  194 (438)
Q Consensus       132 ~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg---~~~eA~~~~~~al~l~P~~~~~~--------------~~l~~a  194 (438)
                      ++++|+.+|++++..  .++.+++++|.+|...|   ++++|+.+|++++..  +++.++              .++.+|
T Consensus       311 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A  386 (490)
T 2xm6_A          311 NREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQA  386 (490)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence            999999999999886  46788999999998877   889999999999987  344441              356678


Q ss_pred             HHHHHHHHhhc
Q 013696          195 KSLYEKEVFQK  205 (438)
Q Consensus       195 ~~~~~ka~~~~  205 (438)
                      ..+|.+++...
T Consensus       387 ~~~~~~A~~~~  397 (490)
T 2xm6_A          387 AIWMRKAAEQG  397 (490)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHhCC
Confidence            88888887764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.78  E-value=7.2e-08  Score=82.67  Aligned_cols=91  Identities=13%  Similarity=0.051  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc---CHHHHHHHHHHHhhcC-C-ccHHHHHHHHHHHHHcCCHHHHHHH
Q 013696          100 FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEAEDDCTEALNLD-D-RYIKAYSRRATARKELGKLKESIED  173 (438)
Q Consensus       100 y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~---~~~eA~~~~~~al~l~-p-~~~~a~~~lg~a~~~lg~~~eA~~~  173 (438)
                      ...+...|.+.+..++. ..+.+++|.|+.+.+   ++++++..++.++..+ | +..+++|++|.+++++|+|++|+.+
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            45667778888777766 999999999999988   7779999999999998 7 6789999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHH
Q 013696          174 SEFALRLEPQNQEIKKQ  190 (438)
Q Consensus       174 ~~~al~l~P~~~~~~~~  190 (438)
                      ++++|+++|+|.++..-
T Consensus        94 ~~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           94 VRGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             HHHHHHHCTTCHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHH
Confidence            99999999999888543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.74  E-value=6.6e-08  Score=94.83  Aligned_cols=122  Identities=11%  Similarity=0.074  Sum_probs=94.0

Q ss_pred             CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccH-------HHHHH-HHH--HHhccCCC-HHHHHHHHHHHHHh
Q 013696           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKF-------KEAID-CYS--RSIALSPT-AVAYANRAMAYLKL  130 (438)
Q Consensus        62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y-------~~Ai~-~y~--~al~~~p~-~~~~~~la~~~~~l  130 (438)
                      .++.+|+.+|+++++++|++..+++  .++.+|+....+       ..++. .+.  .++..+|. +.+|..+|.+++..
T Consensus       213 ~~~~~A~~l~e~Al~lDP~~a~A~A--~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~  290 (372)
T 3ly7_A          213 KSLNRASELLGEIVQSSPEFTYARA--EKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK  290 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC
Confidence            4468899999999999999988866  566665432111       11111 122  22344566 88888899889889


Q ss_pred             cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696          131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (438)
Q Consensus       131 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~  186 (438)
                      |++++|+..+++|+.++|+ ..+|..+|.++...|++++|++.|.+|++++|..+.
T Consensus       291 gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          291 GKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            9999999999999999974 678889999999999999999999999999998753

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.74  E-value=1.2e-08  Score=101.86  Aligned_cols=164  Identities=8%  Similarity=-0.021  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcccccc--------ccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhH----H
Q 013696           19 LQDWDLSLNEKDKKMKHKASSKDNLVSSS--------LKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDA----T   85 (438)
Q Consensus        19 l~~we~~i~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a----~   85 (438)
                      -++|+++++.+...+...+..........        ....+..+|..| ..|++++|+++|.+++...+....+    .
T Consensus        17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   96 (434)
T 4b4t_Q           17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV   96 (434)
T ss_dssp             HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            36788888888888776652222111100        011234466667 8899999999999999866554432    3


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhccCC------C-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc------CCccHH
Q 013696           86 SEKELGNECFKQKKFKEAIDCYSRSIALSP------T-AVAYANRAMAYLKLRRFQEAEDDCTEALNL------DDRYIK  152 (438)
Q Consensus        86 ~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p------~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l------~p~~~~  152 (438)
                      ....+|.++...|+++.|+.+|.+++...+      . +.++.++|.+|...|+|.+|+..+.+++..      .+....
T Consensus        97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~  176 (434)
T 4b4t_Q           97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVD  176 (434)
T ss_dssp             HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHH
Confidence            355778888889999999999999998642      2 788999999999999999999999999865      344578


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696          153 AYSRRATARKELGKLKESIEDSEFALRLEP  182 (438)
Q Consensus       153 a~~~lg~a~~~lg~~~eA~~~~~~al~l~P  182 (438)
                      ++..+|.+|..+|+|++|...|++++.+.+
T Consensus       177 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          177 VHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            899999999999999999999999998753

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.72  E-value=2.3e-08  Score=99.75  Aligned_cols=146  Identities=14%  Similarity=0.010  Sum_probs=117.7

Q ss_pred             cCCCccchHHHHHhhhcCCCCChh---------------HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------H
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPD---------------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------A  117 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~---------------a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~  117 (438)
                      ..|+|++|+..|.+++...|....               ..++..+|..|+..|+|++|+++|.+++...+.       .
T Consensus        16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   95 (434)
T 4b4t_Q           16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVK   95 (434)
T ss_dssp             HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHH
Confidence            668999999999999998876533               123679999999999999999999999987654       3


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------H
Q 013696          118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDD------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN------Q  185 (438)
Q Consensus       118 ~~~~~la~~~~~l~~~~eA~~~~~~al~l~p------~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~------~  185 (438)
                      .++.++|.++...|+++.|+..+..++.+.+      ....++.++|.+|...|+|.+|+..+.+++......      .
T Consensus        96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~  175 (434)
T 4b4t_Q           96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLV  175 (434)
T ss_dssp             HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence            5677889999999999999999999987643      347789999999999999999999999998763221      1


Q ss_pred             HH----------HHHHHHHHHHHHHHHhhc
Q 013696          186 EI----------KKQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       186 ~~----------~~~l~~a~~~~~ka~~~~  205 (438)
                      ++          .+++.+|...|.+++...
T Consensus       176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          176 DVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            11          456677777777776544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.67  E-value=1.3e-07  Score=74.55  Aligned_cols=72  Identities=21%  Similarity=0.114  Sum_probs=65.4

Q ss_pred             CCC-HHHHHHHHHHHHHhcC---HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696          114 SPT-AVAYANRAMAYLKLRR---FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       114 ~p~-~~~~~~la~~~~~l~~---~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~  185 (438)
                      +|+ +.++..+|.+++..++   ..+|...+++++.++|+++.+++.+|.+++..|+|++|+.+|++++..+|.++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            455 8889999999987666   79999999999999999999999999999999999999999999999999853

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.62  E-value=2.6e-07  Score=88.95  Aligned_cols=136  Identities=10%  Similarity=-0.007  Sum_probs=89.1

Q ss_pred             hHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCC--C-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013696           67 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP--T-AVAYANRAMAYLKLRRFQEAEDDCTEA  143 (438)
Q Consensus        67 Ai~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p--~-~~~~~~la~~~~~l~~~~eA~~~~~~a  143 (438)
                      |+..+++.+...+....+  +..+|.++...|++++|+..+.++|..+|  . ..++..++.+|+++|+.+.|.+.+++.
T Consensus        85 a~~~l~~l~~~~~~~~~~--~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYE--LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHH--HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            677777777655444444  44777777778888888888887777776  4 677777777888888888888888777


Q ss_pred             hhcCCc------cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCC--CHHH-------HHHHHHHHHHHHHHHhh
Q 013696          144 LNLDDR------YIKAYSRRATARKELG--KLKESIEDSEFALRLEPQ--NQEI-------KKQLAEVKSLYEKEVFQ  204 (438)
Q Consensus       144 l~l~p~------~~~a~~~lg~a~~~lg--~~~eA~~~~~~al~l~P~--~~~~-------~~~l~~a~~~~~ka~~~  204 (438)
                      .+.+|+      ..-.+..-|++....|  ++++|...|+++....|+  ....       .+++.+|...++..+.+
T Consensus       163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred             HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            777772      2223333344455555  777777777777776665  1111       45566666666644443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.62  E-value=4.9e-07  Score=72.50  Aligned_cols=73  Identities=15%  Similarity=0.099  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHhhc-------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013696          120 YANRAMAYLKLRRFQEAEDDCTEALNL-------DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA  192 (438)
Q Consensus       120 ~~~la~~~~~l~~~~eA~~~~~~al~l-------~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  192 (438)
                      ++.+|..++..++|..|+.+|+.|+..       .+..+.++..+|.++.++|+++.|+..++++++++|++..+..++.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            344455555555555555555555543       2334566666777777777777777777777777777666655544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.57  E-value=5.2e-07  Score=72.35  Aligned_cols=75  Identities=12%  Similarity=0.047  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhccC-------CC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHH
Q 013696           85 TSEKELGNECFKQKKFKEAIDCYSRSIALS-------PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  156 (438)
Q Consensus        85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~-------p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~  156 (438)
                      ..++.+|..++..|+|..|+..|..|+...       +. +.++.++|.||.++|+++.|+..+++++.++|++..+..+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence            347799999999999999999999999963       22 7889999999999999999999999999999999999888


Q ss_pred             HHH
Q 013696          157 RAT  159 (438)
Q Consensus       157 lg~  159 (438)
                      ++.
T Consensus        86 ~~~   88 (104)
T 2v5f_A           86 LKY   88 (104)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            873

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.57  E-value=5.1e-07  Score=88.53  Aligned_cols=136  Identities=14%  Similarity=0.073  Sum_probs=106.7

Q ss_pred             hcCCCCChhHHHHHHHHHHHHHhc---cHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHH-------HHHH-HHH-
Q 013696           75 LMNEESTPDATSEKELGNECFKQK---KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ-------EAED-DCT-  141 (438)
Q Consensus        75 l~~~p~~~~a~~~~~~g~~~~~~g---~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~-------eA~~-~~~-  141 (438)
                      ...-|.+..++.++..|..++..+   .+.+|+.+|+++++++|+ +.+|..++.||.....+.       .++. .+. 
T Consensus       187 ~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a  266 (372)
T 3ly7_A          187 QKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN  266 (372)
T ss_dssp             HHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             hccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence            344677888888999999988764   468999999999999999 899999998886432211       1111 122 


Q ss_pred             -HHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHHHHHHHhhchhhhh
Q 013696          142 -EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE---------IKKQLAEVKSLYEKEVFQKASKTL  210 (438)
Q Consensus       142 -~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~---------~~~~l~~a~~~~~ka~~~~~~~~~  210 (438)
                       .++..+|.++.+|..+|.++...|++++|+..+++|+.++|+...         ..|+.++|...|.+|+.+++..+.
T Consensus       267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence             234677999999999999999999999999999999999986432         156788999999999999877653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.57  E-value=7.6e-07  Score=90.04  Aligned_cols=100  Identities=11%  Similarity=0.054  Sum_probs=84.9

Q ss_pred             HHHHHHHHhccHHHHHHHHHHHhccC-----CC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-----CCc---cH
Q 013696           89 ELGNECFKQKKFKEAIDCYSRSIALS-----PT----AVAYANRAMAYLKLRRFQEAEDDCTEALNL-----DDR---YI  151 (438)
Q Consensus        89 ~~g~~~~~~g~y~~Ai~~y~~al~~~-----p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l-----~p~---~~  151 (438)
                      .....+..+|+|++|+..|++++++.     |+    ..++.++|.+|..+|+|++|+.++.+++.+     .|+   -.
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            34455778999999999999999863     33    678999999999999999999999999965     344   45


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHH
Q 013696          152 KAYSRRATARKELGKLKESIEDSEFALRL-----EPQNQEIK  188 (438)
Q Consensus       152 ~a~~~lg~a~~~lg~~~eA~~~~~~al~l-----~P~~~~~~  188 (438)
                      ..++++|.+|..+|+|++|+..|++|+.+     .|+++...
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  413 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE  413 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence            67999999999999999999999999976     47777664

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.55  E-value=4.6e-07  Score=91.67  Aligned_cols=95  Identities=8%  Similarity=-0.036  Sum_probs=80.9

Q ss_pred             HHHhccHHHHHHHHHHHhccC-----CC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-----CCc---cHHHHHH
Q 013696           94 CFKQKKFKEAIDCYSRSIALS-----PT----AVAYANRAMAYLKLRRFQEAEDDCTEALNL-----DDR---YIKAYSR  156 (438)
Q Consensus        94 ~~~~g~y~~Ai~~y~~al~~~-----p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l-----~p~---~~~a~~~  156 (438)
                      ....|+|++|+..|.+++++.     |+    +..+.|+|.+|..+|+|++|+.+|++++.+     .|+   -...+++
T Consensus       308 ~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  387 (433)
T 3qww_A          308 AKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK  387 (433)
T ss_dssp             HTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            344688999999999999862     33    678999999999999999999999999965     344   4567999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHH
Q 013696          157 RATARKELGKLKESIEDSEFALRL-----EPQNQEIK  188 (438)
Q Consensus       157 lg~a~~~lg~~~eA~~~~~~al~l-----~P~~~~~~  188 (438)
                      +|.+|..+|+|++|+..|++|+.+     .|+++...
T Consensus       388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            999999999999999999999976     47777653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.54  E-value=2.2e-08  Score=100.72  Aligned_cols=131  Identities=13%  Similarity=0.078  Sum_probs=92.1

Q ss_pred             cCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 013696           51 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK  129 (438)
Q Consensus        51 ~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~  129 (438)
                      .+..+|..| ..|+|++|+.+|.++        ..  |..+|.++++.|+|++|+++|.++    .++.+|...+.++..
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n--~~~LA~~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SN--FGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVD  189 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------TC--HHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------hh--HHHHHHHHHHhccHHHHHHHHHHc----CCchhHHHHHHHHHH
Confidence            556677766 788888888888866        12  557888888888888888888888    246778888888888


Q ss_pred             hcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696          130 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (438)
Q Consensus       130 l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (438)
                      .|+|+.|..+... |...|++   ...+...|...|++++|+..++.+|.+++.+..+...+.-+...|.
T Consensus       190 ~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~  255 (449)
T 1b89_A          190 GKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK  255 (449)
T ss_dssp             TTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             cCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC
Confidence            8888888665554 3355544   4467788999999999999999999999999888887766666554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.53  E-value=5.2e-07  Score=77.28  Aligned_cols=98  Identities=9%  Similarity=0.009  Sum_probs=84.9

Q ss_pred             CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc---cHHHHHHHHHHHhccC-C-C-HHHHHHHHHHHHHhcCHHH
Q 013696           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK---KFKEAIDCYSRSIALS-P-T-AVAYANRAMAYLKLRRFQE  135 (438)
Q Consensus        62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g---~y~~Ai~~y~~al~~~-p-~-~~~~~~la~~~~~l~~~~e  135 (438)
                      +....+...|.+.+..++.+.++  .+++|+++.+.+   ++.+++..++..++.+ | . ..++|++|..|+++++|++
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~--~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~   89 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKST--QFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHH--HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence            34566778888888877776777  679999999988   7889999999999999 8 3 8999999999999999999


Q ss_pred             HHHHHHHHhhcCCccHHHHHHHHHHH
Q 013696          136 AEDDCTEALNLDDRYIKAYSRRATAR  161 (438)
Q Consensus       136 A~~~~~~al~l~p~~~~a~~~lg~a~  161 (438)
                      |..+++++++++|++..+...+..+-
T Consensus        90 A~~y~~~lL~ieP~n~QA~~Lk~~ie  115 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAKELERLID  115 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            99999999999999998876655443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.51  E-value=7.9e-07  Score=89.41  Aligned_cols=134  Identities=13%  Similarity=0.166  Sum_probs=89.1

Q ss_pred             CCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Q 013696           52 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKL  130 (438)
Q Consensus        52 ~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l  130 (438)
                      ...++.+| +.|++.++...+..     |+. .  .|..+|..|+..|.|++|+.+|.++       ..|..+|.|+.++
T Consensus        97 ~~~Li~~Y~Klg~l~e~e~f~~~-----pn~-~--a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~L  161 (449)
T 1b89_A           97 ETELIFALAKTNRLAELEEFING-----PNN-A--HIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHL  161 (449)
T ss_dssp             ------------CHHHHTTTTTC-----C-------------------CTTTHHHHHHHT-------TCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHcC-----CcH-H--HHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHh
Confidence            34566677 88999988877743     332 3  4889999999999999999999976       4789999999999


Q ss_pred             cCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHHHHHHHHh
Q 013696          131 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI-------KKQLAEVKSLYEKEVF  203 (438)
Q Consensus       131 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~-------~~~l~~a~~~~~ka~~  203 (438)
                      |+|++|++.+.++     .++.+|...+.++...|+++.|..+... +.++|++...       .+.+.+|..++++++.
T Consensus       162 g~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~  235 (449)
T 1b89_A          162 GEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALG  235 (449)
T ss_dssp             TCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence            9999999999999     4799999999999999999999887765 4466655332       3567788888888877


Q ss_pred             hch
Q 013696          204 QKA  206 (438)
Q Consensus       204 ~~~  206 (438)
                      +..
T Consensus       236 le~  238 (449)
T 1b89_A          236 LER  238 (449)
T ss_dssp             STT
T ss_pred             CcH
Confidence            763

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.49  E-value=2e-06  Score=82.70  Aligned_cols=119  Identities=8%  Similarity=-0.104  Sum_probs=75.6

Q ss_pred             cCCCccchHHHHHhhhcCCC--CChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCC-----CHHHHHHHH--HHHHHh
Q 013696           60 SYSRNYDPVSHISSSLMNEE--STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP-----TAVAYANRA--MAYLKL  130 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p--~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p-----~~~~~~~la--~~~~~l  130 (438)
                      ..|++++|+..+.+.+..+|  ...++  +...+.++.++|+.+.|.+.+.++.+.+|     +-.+..+++  .+.+..
T Consensus       112 ~~g~~eeAL~~l~~~i~~~~~~~~lea--~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~  189 (310)
T 3mv2_B          112 ILGDLDKSLETCVEGIDNDEAEGTTEL--LLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFAT  189 (310)
T ss_dssp             HHTCHHHHHHHHHHHHTSSCSTTHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHhccCCCcCcHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHh
Confidence            55777777777777776665  44444  44667777777777777777777777777     223333333  335545


Q ss_pred             c--CHHHHHHHHHHHhhcCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696          131 R--RFQEAEDDCTEALNLDDR--YIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       131 ~--~~~eA~~~~~~al~l~p~--~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~  183 (438)
                      |  ++.+|...|+++....|+  ....+++   ++..+|++++|...++.++++.|+
T Consensus       190 g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~  243 (310)
T 3mv2_B          190 NKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYS  243 (310)
T ss_dssp             TCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred             CCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhccc
Confidence            5  777777777777666665  2223333   677777777777777766666665

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.45  E-value=8.8e-07  Score=99.23  Aligned_cols=130  Identities=10%  Similarity=-0.019  Sum_probs=100.7

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD  139 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~  139 (438)
                      ..+++++|++++.++     +.+.+  |+.+|.++...|+|++|+.+|.++    .++..|.+.|.++.++|+|++|+++
T Consensus      1088 ~i~nldrAiE~Aerv-----n~p~v--WsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERC-----NEPAV--WSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred             HHhhHHHHHHHHHhc-----CCHHH--HHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHH
Confidence            556777777777765     33555  779999999999999999999876    3388999999999999999999999


Q ss_pred             HHHHhhcCCc---------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-----
Q 013696          140 CTEALNLDDR---------------------------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI-----  187 (438)
Q Consensus       140 ~~~al~l~p~---------------------------~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~-----  187 (438)
                      +..|+...+.                           +...|.++|..+...|+|++|+.+|.++-    ....+     
T Consensus      1157 L~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~----ny~rLA~tLv 1232 (1630)
T 1xi4_A         1157 LQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----NFGRLASTLV 1232 (1630)
T ss_pred             HHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh----HHHHHHHHHH
Confidence            9988866532                           23457788999999999999999998872    11111     


Q ss_pred             -HHHHHHHHHHHHHHHhh
Q 013696          188 -KKQLAEVKSLYEKEVFQ  204 (438)
Q Consensus       188 -~~~l~~a~~~~~ka~~~  204 (438)
                       .+++..|.+.++++...
T Consensus      1233 kLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A         1233 HLGEYQAAVDGARKANST 1250 (1630)
T ss_pred             HhCCHHHHHHHHHHhCCH
Confidence             45677777777776443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.42  E-value=4.9e-07  Score=91.47  Aligned_cols=94  Identities=13%  Similarity=0.080  Sum_probs=79.6

Q ss_pred             cCCCccchHHHHHhhhc-----CCCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccC-----C---C-HHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLM-----NEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALS-----P---T-AVAYANRA  124 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~-----~~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~-----p---~-~~~~~~la  124 (438)
                      ..|+|++|+..|+++|.     +.|+++. +..+.++|.+|..+|+|++|+.+|.+++.+.     |   + +..++|+|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            45789999999999998     3455554 5568899999999999999999999999872     3   3 78899999


Q ss_pred             HHHHHhcCHHHHHHHHHHHhhc-----CCccHHH
Q 013696          125 MAYLKLRRFQEAEDDCTEALNL-----DDRYIKA  153 (438)
Q Consensus       125 ~~~~~l~~~~eA~~~~~~al~l-----~p~~~~a  153 (438)
                      .+|..+|+|++|+..|++|+.+     .|+++..
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            9999999999999999999975     5666543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.39  E-value=7.7e-07  Score=90.00  Aligned_cols=105  Identities=9%  Similarity=0.008  Sum_probs=85.8

Q ss_pred             cCCCccchHHHHHhhhcC-----CCCChh-HHHHHHHHHHHHHhccHHHHHHHHHHHhccC-----CC----HHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMN-----EESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALS-----PT----AVAYANRA  124 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~-----~p~~~~-a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~-----p~----~~~~~~la  124 (438)
                      .+|+|++|+..|++++.+     .|+++. +..+.++|.+|..+|+|++|+.+|.+++.+.     |+    +..++|+|
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa  378 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG  378 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence            678899999999999975     344443 5568899999999999999999999999863     33    77899999


Q ss_pred             HHHHHhcCHHHHHHHHHHHhhc-----CCccH---HHHHHHHHHHHHc
Q 013696          125 MAYLKLRRFQEAEDDCTEALNL-----DDRYI---KAYSRRATARKEL  164 (438)
Q Consensus       125 ~~~~~l~~~~eA~~~~~~al~l-----~p~~~---~a~~~lg~a~~~l  164 (438)
                      .+|..+|+|++|+..+.+|+.+     .|+++   ..+.+++.++..+
T Consensus       379 ~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          379 KLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            9999999999999999999965     46654   4456677666543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.36  E-value=6.2e-06  Score=77.94  Aligned_cols=108  Identities=13%  Similarity=0.014  Sum_probs=90.9

Q ss_pred             CCCCChhHHHHHHHHHHHH-Hh--c------cHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHh-----cCHHHHHHH
Q 013696           77 NEESTPDATSEKELGNECF-KQ--K------KFKEAIDCYSRSIALSPT---AVAYANRAMAYLKL-----RRFQEAEDD  139 (438)
Q Consensus        77 ~~p~~~~a~~~~~~g~~~~-~~--g------~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l-----~~~~eA~~~  139 (438)
                      .+|++.++..|...++.-+ ..  |      ....|...++++++++|+   ..+|..+|..|...     |+.+.|..+
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            5667777755555554332 21  2      467899999999999999   77999999999995     999999999


Q ss_pred             HHHHhhcCCcc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Q 013696          140 CTEALNLDDRY-IKAYSRRATARKE-LGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       140 ~~~al~l~p~~-~~a~~~lg~a~~~-lg~~~eA~~~~~~al~l~P~~  184 (438)
                      |++|+.++|+. ..+++..|..+.. .|++++|...+++++...|..
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            99999999975 9999999999988 599999999999999998763

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.25  E-value=2.1e-05  Score=64.98  Aligned_cols=97  Identities=13%  Similarity=0.031  Sum_probs=80.7

Q ss_pred             HhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHH---HHHHHHHHhhcC-C-ccHHHHHHHHHHHHHcCCHHH
Q 013696           96 KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE---AEDDCTEALNLD-D-RYIKAYSRRATARKELGKLKE  169 (438)
Q Consensus        96 ~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~e---A~~~~~~al~l~-p-~~~~a~~~lg~a~~~lg~~~e  169 (438)
                      .......+...|.+.+..++. ..+.+++|.++.+.++...   ++..++..+..+ | ..-.++|.+|.+++++|+|.+
T Consensus        13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~   92 (126)
T 1nzn_A           13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence            344456667777777776654 9999999999999887666   999999999887 5 567899999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHH
Q 013696          170 SIEDSEFALRLEPQNQEIKKQLA  192 (438)
Q Consensus       170 A~~~~~~al~l~P~~~~~~~~l~  192 (438)
                      |+.+++.+|+++|+|.++..-..
T Consensus        93 A~~~~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           93 ALKYVRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999999999998854433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.25  E-value=6.3e-06  Score=69.41  Aligned_cols=101  Identities=16%  Similarity=0.080  Sum_probs=84.3

Q ss_pred             hccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHH
Q 013696           97 QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESI  171 (438)
Q Consensus        97 ~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~----lg~~~eA~  171 (438)
                      .+++++|+.+|.++.+.... +.    +|.+|...+.+++|+.+|+++...  .++.+++++|.+|..    .+++++|+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            46799999999999998743 33    999999999999999999999987  689999999999999    89999999


Q ss_pred             HHHHHHHhhCCCCHHHH--------------HHHHHHHHHHHHHHhhc
Q 013696          172 EDSEFALRLEPQNQEIK--------------KQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       172 ~~~~~al~l~P~~~~~~--------------~~l~~a~~~~~ka~~~~  205 (438)
                      .+|+++...  +++.+.              .++.+|..+|.++....
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            999999987  455552              34566666777766554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.25  E-value=4.6e-06  Score=65.55  Aligned_cols=71  Identities=21%  Similarity=0.135  Sum_probs=64.1

Q ss_pred             CCCChhHHHHHHHHHHHHHhcc---HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc
Q 013696           78 EESTPDATSEKELGNECFKQKK---FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY  150 (438)
Q Consensus        78 ~p~~~~a~~~~~~g~~~~~~g~---y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~  150 (438)
                      +|+++..  +..+|.+++..++   .++|..++.++++++|+ ..+++.+|..++..|+|++|+..+++++..+|.+
T Consensus         2 ~p~~~~~--~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQ--LAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHH--HHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            4677777  6699999976666   79999999999999999 9999999999999999999999999999999884

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.91  E-value=6.3e-05  Score=62.08  Aligned_cols=95  Identities=8%  Similarity=-0.009  Sum_probs=78.9

Q ss_pred             cchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHH---HHHHHHHHhccC-CC--HHHHHHHHHHHHHhcCHHHHHH
Q 013696           65 YDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKE---AIDCYSRSIALS-PT--AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        65 ~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~---Ai~~y~~al~~~-p~--~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..+...|.+.+..++....+  .+++|+++.+..+..+   +|..+...+..+ |.  -.+++.+|..++++|+|..|..
T Consensus        18 ~~~~~~y~~e~~~~~~s~~~--~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGSVSKST--QFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHSCCCHHH--HHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            34556677777766655666  6699999999887666   999999999987 63  7889999999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHH
Q 013696          139 DCTEALNLDDRYIKAYSRRATAR  161 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~  161 (438)
                      +++.+|+++|+|..|......+-
T Consensus        96 ~~~~lL~~eP~n~QA~~Lk~~i~  118 (126)
T 1nzn_A           96 YVRGLLQTEPQNNQAKELERLID  118 (126)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999998876665543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.85  E-value=0.00013  Score=77.86  Aligned_cols=113  Identities=13%  Similarity=-0.005  Sum_probs=74.6

Q ss_pred             chHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHH-HHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013696           66 DPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAI-DCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEA  143 (438)
Q Consensus        66 eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai-~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~a  143 (438)
                      .....|+++|...|..+..  |...+..+...|+.++|+ ..|.+|+...|. ..+|...+......|+++.|...|+++
T Consensus       327 Rv~~~Ye~aL~~~p~~~~l--W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~  404 (679)
T 4e6h_A          327 RMTYVYMQAAQHVCFAPEI--WFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC  404 (679)
T ss_dssp             HHHHHHHHHHHHTTTCHHH--HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHH--HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3456677777777776666  556677777777777776 777777777776 666667777777777777777777777


Q ss_pred             hhcC-----------Cc-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696          144 LNLD-----------DR-----------YIKAYSRRATARKELGKLKESIEDSEFALRL  180 (438)
Q Consensus       144 l~l~-----------p~-----------~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l  180 (438)
                      +..-           |.           ...+|...+......|..+.|...|.+|+..
T Consensus       405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            6531           31           3345666666666666666666666666655

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.77  E-value=0.00047  Score=57.12  Aligned_cols=76  Identities=12%  Similarity=0.014  Sum_probs=62.3

Q ss_pred             CCHHHHHHHHHHHHHhcC---HHHHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 013696          115 PTAVAYANRAMAYLKLRR---FQEAEDDCTEALNLDDR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ  190 (438)
Q Consensus       115 p~~~~~~~la~~~~~l~~---~~eA~~~~~~al~l~p~-~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  190 (438)
                      |.+.+-++.|.|+.+.++   ...++..++..+..+|. .-..+|.+|.+++++|+|.+|..+.+.+|+++|+|.++..-
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            447888888888888764   44688888888888884 47789999999999999999999999999999999887543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.76  E-value=5e-05  Score=71.73  Aligned_cols=91  Identities=11%  Similarity=-0.045  Sum_probs=80.4

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHh-----ccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHH-hc
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ-----KKFKEAIDCYSRSIALSPT--AVAYANRAMAYLK-LR  131 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~-----g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~-l~  131 (438)
                      ..+....|...++++++++|+.....+|..+|..|...     |+.++|..+|+++++++|+  ..+++..|..++. .|
T Consensus       175 Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g  254 (301)
T 3u64_A          175 LPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN  254 (301)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred             HHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence            34557789999999999999966655578999999995     9999999999999999996  8889999999888 49


Q ss_pred             CHHHHHHHHHHHhhcCCcc
Q 013696          132 RFQEAEDDCTEALNLDDRY  150 (438)
Q Consensus       132 ~~~eA~~~~~~al~l~p~~  150 (438)
                      ++++|...+++|+..+|..
T Consensus       255 d~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          255 NRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             CHHHHHHHHHHHHHCCGGG
T ss_pred             CHHHHHHHHHHHHcCCCCC
Confidence            9999999999999998874

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.69  E-value=0.00071  Score=56.73  Aligned_cols=76  Identities=13%  Similarity=0.067  Sum_probs=64.6

Q ss_pred             CCCHHHHHHHHHHHHHhcCH---HHHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 013696          114 SPTAVAYANRAMAYLKLRRF---QEAEDDCTEALNLDD-RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK  189 (438)
Q Consensus       114 ~p~~~~~~~la~~~~~l~~~---~eA~~~~~~al~l~p-~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~  189 (438)
                      .|...+.|+.|.|+.+..+.   .+++..++..+..+| ..-..+|.+|.+++++|+|.+|..+.+.+|+++|+|.++..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            35588888999998887754   468888999888887 45778999999999999999999999999999999988754

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.68  E-value=0.00015  Score=77.29  Aligned_cols=144  Identities=13%  Similarity=0.086  Sum_probs=104.8

Q ss_pred             cCCCccchH-HHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccC-----------C-----------C
Q 013696           60 SYSRNYDPV-SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-----------P-----------T  116 (438)
Q Consensus        60 ~~g~~~eAi-~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~-----------p-----------~  116 (438)
                      ..|+.++|+ ..|.+++...|.....  +...+......|+++.|...|.+++...           |           .
T Consensus       355 ~~~~~~~a~r~il~rAi~~~P~s~~L--wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~  432 (679)
T 4e6h_A          355 EKNTDSTVITKYLKLGQQCIPNSAVL--AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK  432 (679)
T ss_dssp             HHSCCTTHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence            346777886 8888888888876655  5577888888888888888888888742           3           1


Q ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHH----
Q 013696          117 -AVAYANRAMAYLKLRRFQEAEDDCTEALNL-DDRYIKAYSRRATARKELGK-LKESIEDSEFALRLEPQNQEIKK----  189 (438)
Q Consensus       117 -~~~~~~la~~~~~l~~~~eA~~~~~~al~l-~p~~~~a~~~lg~a~~~lg~-~~eA~~~~~~al~l~P~~~~~~~----  189 (438)
                       ..+|...+......|..+.|...|.+|++. .+.....|...|......|+ ++.|...|+++++..|+++..+.    
T Consensus       433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~  512 (679)
T 4e6h_A          433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD  512 (679)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence             345777777777788888888888888887 44456677766766666654 88888888888888888877742    


Q ss_pred             ------HHHHHHHHHHHHHhhc
Q 013696          190 ------QLAEVKSLYEKEVFQK  205 (438)
Q Consensus       190 ------~l~~a~~~~~ka~~~~  205 (438)
                            +...|..+|++++...
T Consensus       513 fe~~~~~~~~AR~lferal~~~  534 (679)
T 4e6h_A          513 FLIYVNEESQVKSLFESSIDKI  534 (679)
T ss_dssp             HHHHHTCHHHHHHHHHHHTTTS
T ss_pred             HHHhCCCHHHHHHHHHHHHHhc
Confidence                  3445556666665544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.42  E-value=0.0016  Score=53.98  Aligned_cols=82  Identities=7%  Similarity=0.018  Sum_probs=69.3

Q ss_pred             ChhHHHHHHHHHHHHHhcc---HHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHH
Q 013696           81 TPDATSEKELGNECFKQKK---FKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS  155 (438)
Q Consensus        81 ~~~a~~~~~~g~~~~~~g~---y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~  155 (438)
                      .+...+.+++|+++.+..+   ...+|..+...+...|.  -..++.+|..++++|+|.+|..+++.+++++|+|..|..
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            3444557799999998764   56799999999998885  889999999999999999999999999999999998876


Q ss_pred             HHHHHHH
Q 013696          156 RRATARK  162 (438)
Q Consensus       156 ~lg~a~~  162 (438)
                      ....+-.
T Consensus       117 Lk~~Ie~  123 (134)
T 3o48_A          117 LKSMVED  123 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.35  E-value=0.0029  Score=53.01  Aligned_cols=80  Identities=6%  Similarity=0.005  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHHHHHHhcc---HHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHH
Q 013696           82 PDATSEKELGNECFKQKK---FKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  156 (438)
Q Consensus        82 ~~a~~~~~~g~~~~~~g~---y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~  156 (438)
                      +.....+++|+++.+..+   ..++|..++..+...|.  -..++.+|..++++|+|.+|..+++.+|+++|+|..|...
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            344447799999999765   45799999999998885  8889999999999999999999999999999999888665


Q ss_pred             HHHHH
Q 013696          157 RATAR  161 (438)
Q Consensus       157 lg~a~  161 (438)
                      ...+-
T Consensus       117 k~~Ie  121 (144)
T 1y8m_A          117 KSMVE  121 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.26  E-value=0.0011  Score=57.01  Aligned_cols=90  Identities=16%  Similarity=0.031  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccC---CC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC---------
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALS---PT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLD---------  147 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~---p~-------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~---------  147 (438)
                      ++.....++..|.|+.|+-.+..++.+.   |+       ..++..+|.+++..++|..|+..|++||++.         
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            4455566666666666666666655442   22       3455666666666666666666666665331         


Q ss_pred             ----------------CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 013696          148 ----------------DRYIKAYSRRATARKELGKLKESIEDSEF  176 (438)
Q Consensus       148 ----------------p~~~~a~~~lg~a~~~lg~~~eA~~~~~~  176 (438)
                                      +.+....|.+|.||.++|++++|+..++.
T Consensus       103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                            22346889999999999999999998764

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.20  E-value=0.0045  Score=52.36  Aligned_cols=109  Identities=18%  Similarity=0.056  Sum_probs=89.4

Q ss_pred             cCCCCChhHHHHHHHHHHHHHhccH------HHHHHHHHHHhccCCC---------HHHHHHHHHHHHHhcCHHHHHHHH
Q 013696           76 MNEESTPDATSEKELGNECFKQKKF------KEAIDCYSRSIALSPT---------AVAYANRAMAYLKLRRFQEAEDDC  140 (438)
Q Consensus        76 ~~~p~~~~a~~~~~~g~~~~~~g~y------~~Ai~~y~~al~~~p~---------~~~~~~la~~~~~l~~~~eA~~~~  140 (438)
                      -+.|++++.  |.......-+.|+.      +.-++.|++|+..-|.         ..+|.+.|.. ..+++.++|.+.|
T Consensus         7 ~~~p~~yd~--W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy   83 (161)
T 4h7y_A            7 MMMANNPED--WLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYF   83 (161)
T ss_dssp             ---CCSHHH--HHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHH
T ss_pred             eeCCCCHHH--HHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHH
Confidence            356788888  66777777777888      8888999999997754         3455555644 6679999999999


Q ss_pred             HHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          141 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       141 ~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      ..|+.+....++.|...|.--..+|+...|...+.+++-+.|...+.
T Consensus        84 ~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           84 QMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             HHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            99999888889999999999999999999999999999999987654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.87  E-value=0.001  Score=57.27  Aligned_cols=102  Identities=14%  Similarity=0.044  Sum_probs=76.7

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChh-------HHHHHHHHHHHHHhccHHHHHHHHHHHhccCC---C------------
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPD-------ATSEKELGNECFKQKKFKEAIDCYSRSIALSP---T------------  116 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~-------a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p---~------------  116 (438)
                      |+.|.|+.|+.....++....++++       +..+..+|..+|..|+|..|...|+++|.+..   .            
T Consensus        31 ~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~s  110 (167)
T 3ffl_A           31 AAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSA  110 (167)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------
T ss_pred             HHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccC
Confidence            4778999999999887765433332       34477899999999999999999999877531   1            


Q ss_pred             -----------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 013696          117 -----------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (438)
Q Consensus       117 -----------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~  161 (438)
                                 ..+.+.+|.||.+++++.+|+..++.. -..-..++....+|..|
T Consensus       111 s~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          111 STPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             CCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence                       267799999999999999999986653 22234566666666654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.87  E-value=0.012  Score=60.19  Aligned_cols=120  Identities=10%  Similarity=-0.099  Sum_probs=86.8

Q ss_pred             chHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHH-------------------
Q 013696           66 DPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAM-------------------  125 (438)
Q Consensus        66 eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~-------------------  125 (438)
                      .....|++++...|..+..  |...+..+...|+.+.|...|.+|+.. |. ...+...+.                   
T Consensus       197 Rv~~~ye~al~~~p~~~~l--W~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~  273 (493)
T 2uy1_A          197 RMHFIHNYILDSFYYAEEV--YFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGE  273 (493)
T ss_dssp             HHHHHHHHHHHHTTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHcCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhc
Confidence            4567999999988888777  778899999999999999999999999 87 322222221                   


Q ss_pred             ---------------------HHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC
Q 013696          126 ---------------------AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG-KLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       126 ---------------------~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg-~~~eA~~~~~~al~l~P~  183 (438)
                                           .....+..+.|...|.+| ...+.....|...|..-...| +++.|...|+.+++..|+
T Consensus       274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~  352 (493)
T 2uy1_A          274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD  352 (493)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred             cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence                                 122355677788888888 433334556666666666555 588888888888888888


Q ss_pred             CHHHHH
Q 013696          184 NQEIKK  189 (438)
Q Consensus       184 ~~~~~~  189 (438)
                      ++..+.
T Consensus       353 ~~~~~~  358 (493)
T 2uy1_A          353 STLLKE  358 (493)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            776543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.83  E-value=0.023  Score=58.23  Aligned_cols=141  Identities=13%  Similarity=0.118  Sum_probs=98.9

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHH---------hccHHHHHHHHHHHhcc--CCCHHHHHHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK---------QKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYL  128 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~---------~g~y~~Ai~~y~~al~~--~p~~~~~~~la~~~~  128 (438)
                      +.|++++|+..|++..... -.+....|..+-.+|..         .+..+.|...|.+....  .|+...|..+-.+|.
T Consensus        38 k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~  116 (501)
T 4g26_A           38 KKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV  116 (501)
T ss_dssp             TSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            7789999999998877643 11223334444444443         34578888888877664  477888888888888


Q ss_pred             HhcCHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHH---------HHHHHHHHH
Q 013696          129 KLRRFQEAEDDCTEALNLD-DRYIKAYSRRATARKELGKLKESIEDSEFALRLE--PQNQEI---------KKQLAEVKS  196 (438)
Q Consensus       129 ~l~~~~eA~~~~~~al~l~-p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~--P~~~~~---------~~~l~~a~~  196 (438)
                      +.|++++|...+....... .-+...|..+-.+|...|++++|...|+......  |+....         .+..++|.+
T Consensus       117 ~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~  196 (501)
T 4g26_A          117 AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYK  196 (501)
T ss_dssp             HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHH
Confidence            9999999999988877653 2256778888888888999999999998877643  543322         345566666


Q ss_pred             HHHHH
Q 013696          197 LYEKE  201 (438)
Q Consensus       197 ~~~ka  201 (438)
                      ++++-
T Consensus       197 ll~~M  201 (501)
T 4g26_A          197 TLQRL  201 (501)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.66  E-value=0.022  Score=58.36  Aligned_cols=121  Identities=7%  Similarity=0.012  Sum_probs=99.4

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhcCHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~--~p~~~~~~~la~~~~~l~~~~eA~  137 (438)
                      ..+.+++|...|.+..... -.++...|..+-..|.+.|++++|+..|.+..+.  .|+...|..+-.+|.+.|++++|.
T Consensus        82 ~~~~l~~A~~lf~~M~~~G-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~  160 (501)
T 4g26_A           82 PNPGLSRGFDIFKQMIVDK-VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY  160 (501)
T ss_dssp             CCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcchHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHH
Confidence            4456788999998876543 2234445778889999999999999999988775  477888999999999999999999


Q ss_pred             HHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 013696          138 DDCTEALNLDD-RYIKAYSRRATARKELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       138 ~~~~~al~l~p-~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~  181 (438)
                      ..|.......- -+...|..+-.++...|++++|...|++.-...
T Consensus       161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g  205 (501)
T 4g26_A          161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV  205 (501)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence            99999887542 256788899999999999999999999987643

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.26  E-value=0.014  Score=62.58  Aligned_cols=111  Identities=6%  Similarity=-0.049  Sum_probs=78.3

Q ss_pred             ccchHHHHHhhhcCCCCChhHHHHHHHHHHH--HH-hccHHHHHHHHHHHhcc--------CCC-----------HHHHH
Q 013696           64 NYDPVSHISSSLMNEESTPDATSEKELGNEC--FK-QKKFKEAIDCYSRSIAL--------SPT-----------AVAYA  121 (438)
Q Consensus        64 ~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~--~~-~g~y~~Ai~~y~~al~~--------~p~-----------~~~~~  121 (438)
                      ++.|+..+++....+|.....   +..+.+.  .. ..+=-+|+....++++-        .+.           ...+.
T Consensus       265 ~~~a~~~le~L~~~~p~~~~~---~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~  341 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDIY---YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLN  341 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHH---HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHH
Confidence            466888888888877644322   2222221  11 22344577777666631        111           22444


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013696          122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA  177 (438)
Q Consensus       122 ~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~a  177 (438)
                      --+.-++..|+|+-|+...++|+...|.....|+.|+.+|..+|+|+.|+-.++-+
T Consensus       342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          342 IQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            45666778899999999999999999999999999999999999999999766554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.00  E-value=0.1  Score=53.13  Aligned_cols=115  Identities=4%  Similarity=-0.130  Sum_probs=90.4

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHH--------------------------------------HHHHHHHHHHhccHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATS--------------------------------------EKELGNECFKQKKFK  101 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~--------------------------------------~~~~g~~~~~~g~y~  101 (438)
                      ..|+.+.|...|.+++.. |.+...+.                                      |...+..+.+.+..+
T Consensus       225 ~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~  303 (493)
T 2uy1_A          225 GIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLE  303 (493)
T ss_dssp             HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHH
Confidence            668999999999999998 87754321                                      122222233467789


Q ss_pred             HHHHHHHHHhccCCC--HHHHHHHHHHHHHhc-CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013696          102 EAIDCYSRSIALSPT--AVAYANRAMAYLKLR-RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA  177 (438)
Q Consensus       102 ~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~-~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~a  177 (438)
                      .|...|.+| . .|.  ...|...|..-...+ +++.|...|+.++...|+.+..|...+.....+|+.+.|...|+++
T Consensus       304 ~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          304 LFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999 3 444  667776776666666 6999999999999999999988888888888999999999999998

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.20  E-value=0.39  Score=41.35  Aligned_cols=119  Identities=12%  Similarity=0.067  Sum_probs=84.6

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD  139 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~  139 (438)
                      +..+|+.++-.-.-.+..   .++-  -..++..++-.|.|..|+-++..   ++ ...+.+..+.||.++++|..|+..
T Consensus        14 kY~dYdt~~fLsa~L~~~---~~eY--~lL~~I~LyyngEY~R~Lf~L~~---lN-T~Ts~YYk~LCy~klKdYkkA~~~   84 (242)
T 3kae_A           14 RYRDYETAIFLAACLLPC---KPEY--RMLMSIVLYLNGEYTRALFHLHK---LN-TCTSKYYESLCYKKKKDYKKAIKS   84 (242)
T ss_dssp             HTTCHHHHHHHHHHHC-------CT--HHHHHHHHHHTTCHHHHHHHHHT---CC-BHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcccccHHHHHHHHHccC---ChHH--HhhhhhhhhhcchHhHHHHHHHh---cc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566555433333222   3343  23678999999999999877532   22 266667779999999999999999


Q ss_pred             HHHHh--hcC---------------CccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          140 CTEAL--NLD---------------DRYIK-AYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       140 ~~~al--~l~---------------p~~~~-a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      .+..+  ..+               |.+-. -+..+|..+...|+-++|+.+|.......|-.+.+
T Consensus        85 le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v  150 (242)
T 3kae_A           85 LESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV  150 (242)
T ss_dssp             HHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence            99999  332               33333 35678999999999999999999999999876544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.63  E-value=0.35  Score=47.55  Aligned_cols=91  Identities=11%  Similarity=-0.008  Sum_probs=74.4

Q ss_pred             HHHHHHHHhccHHHHHHHHHHHhccCCC---H--------------------HHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696           89 ELGNECFKQKKFKEAIDCYSRSIALSPT---A--------------------VAYANRAMAYLKLRRFQEAEDDCTEALN  145 (438)
Q Consensus        89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~---~--------------------~~~~~la~~~~~l~~~~eA~~~~~~al~  145 (438)
                      ..|......|+.+.|+..+.+|+.+...   +                    .+...++.+++..|++.+|+..+..++.
T Consensus       120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~  199 (388)
T 2ff4_A          120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF  199 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3444455568888899999998887421   0                    2334467788899999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013696          146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALR  179 (438)
Q Consensus       146 l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~  179 (438)
                      .+|-+-.+|..+-.++...|+..+|+..|+++-+
T Consensus       200 ~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          200 EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988754

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.37  E-value=0.23  Score=50.55  Aligned_cols=74  Identities=14%  Similarity=0.100  Sum_probs=35.3

Q ss_pred             HHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 013696           89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (438)
Q Consensus        89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~  162 (438)
                      .+|....-...+..|..+|.+|+.+.|. ..+|..+|.+....|++-+|+-+|.+++......+.+..++...+.
T Consensus       157 ~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            3444444444444555555555555554 4445555554444444445555555554444444444444444433

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.29  E-value=0.21  Score=50.85  Aligned_cols=78  Identities=13%  Similarity=-0.020  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696          119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (438)
Q Consensus       119 ~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  196 (438)
                      .+..+|........+..|..+|.+|+.+.|++..+|+.+|.+....|+.-+|+-+|.+++......+.+..++.....
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            456678888888889999999999999999999999999999999999999999999999988778888777765443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.10  E-value=0.11  Score=51.93  Aligned_cols=97  Identities=8%  Similarity=-0.106  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC--Ccc----HHHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLD--DRY----IKAYSR  156 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----~~~~~~la~~~~~l~~~~eA~~~~~~al~l~--p~~----~~a~~~  156 (438)
                      +..+|..|+..|+++.|+++|.++......    ...+.....+++..++|..+...+.++..+-  ..+    ......
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~  213 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY  213 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence            669999999999999999999998876433    7888888999999999999999999996542  112    233455


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 013696          157 RATARKELGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       157 lg~a~~~lg~~~eA~~~~~~al~l~P~  183 (438)
                      .|.++...++|.+|...|..++.-...
T Consensus       214 ~gl~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          214 YGIHCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             HHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhChHHHHHHHHHHHhccCCc
Confidence            677788899999999999988866543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.40  E-value=0.89  Score=39.45  Aligned_cols=99  Identities=12%  Similarity=-0.016  Sum_probs=65.7

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD  139 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~  139 (438)
                      ..|+++.|.+.....     ++...  |+.+|......|+++-|..||.++-.       +..+...|...|+-+.-...
T Consensus        17 ~lg~l~~A~e~a~~l-----~~~~~--Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~~e~L~kl   82 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL-----NDSIT--WERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGDVNKLSKM   82 (177)
T ss_dssp             HTTCHHHHHHHHHHH-----CCHHH--HHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHHHH
T ss_pred             hcCCHHHHHHHHHHh-----CCHHH--HHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCCHHHHHHH
Confidence            568888888876654     22333  88999999999999999999988644       23345566667776665555


Q ss_pred             HHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 013696          140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA  177 (438)
Q Consensus       140 ~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~a  177 (438)
                      .+.|...+..     .....++..+|+++++++.|.+.
T Consensus        83 a~iA~~~g~~-----n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           83 QNIAQTREDF-----GSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHCccH-----HHHHHHHHHcCCHHHHHHHHHHC
Confidence            5555443322     22334566788888888777544

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.15  E-value=2.4  Score=36.56  Aligned_cols=82  Identities=11%  Similarity=-0.015  Sum_probs=59.3

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHh--cc--CC-------------C--HHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSI--AL--SP-------------T--AVAY  120 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al--~~--~p-------------~--~~~~  120 (438)
                      -.|.|..|+-++...     +...+  .+-...||.+.++|..|+.+.+..+  .+  +|             .  .-.+
T Consensus        45 yngEY~R~Lf~L~~l-----NT~Ts--~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy  117 (242)
T 3kae_A           45 LNGEYTRALFHLHKL-----NTCTS--KYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFE  117 (242)
T ss_dssp             HTTCHHHHHHHHHTC-----CBHHH--HHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHH
T ss_pred             hcchHhHHHHHHHhc-----chHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHH
Confidence            557777666655432     23333  6677889999999999999999988  22  22             2  3456


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHhhcCC
Q 013696          121 ANRAMAYLKLRRFQEAEDDCTEALNLDD  148 (438)
Q Consensus       121 ~~la~~~~~l~~~~eA~~~~~~al~l~p  148 (438)
                      ..+|..+...|+-++|+.++......+|
T Consensus       118 ~l~a~lltq~g~r~EaI~y~~~Sf~~~~  145 (242)
T 3kae_A          118 SLLGDLCTLSGYREEGIGHYVRSFGKSF  145 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence            6678888999999999999988876654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.14  E-value=0.31  Score=52.07  Aligned_cols=57  Identities=14%  Similarity=0.075  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEA  143 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~a  143 (438)
                      +...+..+...|+|+-|+.+-.+|+.+.|. -..|+.|+.||..+|+|+.|+-.+.-+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            556778888999999999999999999999 999999999999999999998766555

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=92.44  E-value=0.57  Score=46.17  Aligned_cols=93  Identities=12%  Similarity=-0.016  Sum_probs=75.2

Q ss_pred             HHHHHHHHhccHHHHHHHHHHHhcc----CCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC---cc----HHHH
Q 013696           89 ELGNECFKQKKFKEAIDCYSRSIAL----SPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD---RY----IKAY  154 (438)
Q Consensus        89 ~~g~~~~~~g~y~~Ai~~y~~al~~----~p~---~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p---~~----~~a~  154 (438)
                      .+|..|+..|+|.+|+..+.+.+.-    +..   ..++.....+|..++++..+...+.+|.....   .+    +...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            7899999999999999999888773    222   67788889999999999999999999975531   22    2345


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHhhC
Q 013696          155 SRRATARK-ELGKLKESIEDSEFALRLE  181 (438)
Q Consensus       155 ~~lg~a~~-~lg~~~eA~~~~~~al~l~  181 (438)
                      ..-|.++. ..++|..|..+|-.++.-.
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            56688888 8999999999999987543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=92.32  E-value=2.8  Score=38.83  Aligned_cols=116  Identities=11%  Similarity=0.005  Sum_probs=73.7

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEA  136 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA  136 (438)
                      +..|++++|++.....++.+|.+...+.  .+...+.-.|+|+.|...++.+.+++|.  +.+...+..+        .|
T Consensus         8 l~~g~L~~al~~~~~~VR~~P~da~~R~--~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI--------~a   77 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKASPKDASLRS--SFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV--------KA   77 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHH--HHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH--------HH
T ss_pred             HhCCCHHHHHHHHHHHHHhCCcCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH--------HH
Confidence            4667788888888888888888888765  6777788888888888888888888887  2221112221        12


Q ss_pred             HHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          137 EDDCTEALNL--------DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       137 ~~~~~~al~l--------~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      +..-...+.-        .|.........+......|+.++|...-..++...|..
T Consensus        78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~  133 (273)
T 1zbp_A           78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  133 (273)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence            2222222211        12223334455666666788888887777777776654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=92.06  E-value=1.2  Score=37.69  Aligned_cols=100  Identities=12%  Similarity=0.006  Sum_probs=74.0

Q ss_pred             cchHHHHHhhhcCCCCChh------HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696           65 YDPVSHISSSLMNEESTPD------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        65 ~eAi~~~~~al~~~p~~~~------a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~  137 (438)
                      ++-++.|++++..-|....      ++.|...+.. ...++.++|-..|+.|+.+... +.+|...|.--.++|+...|.
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kAR  114 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSK  114 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence            4556788888876654321      3334444433 5568999999999999998656 999999999999999999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHHcCC
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARKELGK  166 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~  166 (438)
                      +.+.+|+.+.|..... +..|....+.|+
T Consensus       115 kILg~AiG~~~k~~~~-le~a~~nl~~~~  142 (161)
T 4h7y_A          115 QLLQKAVERGAVPLEM-LEIALRNLNLQK  142 (161)
T ss_dssp             HHHHHHHHTTCBCHHH-HHHHHHHHHTTC
T ss_pred             HHHHHHhccCCCcHHH-HHHHHHhhhcCC
Confidence            9999999999875433 344444455554

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.03  E-value=0.29  Score=49.81  Aligned_cols=138  Identities=12%  Similarity=-0.046  Sum_probs=69.0

Q ss_pred             cCCCccchHHHHHhhhc---C---CCCC---hhHHHHHHHHHHHHHhccHHHHH--------------HHHHH-HhccCC
Q 013696           60 SYSRNYDPVSHISSSLM---N---EEST---PDATSEKELGNECFKQKKFKEAI--------------DCYSR-SIALSP  115 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~---~---~p~~---~~a~~~~~~g~~~~~~g~y~~Ai--------------~~y~~-al~~~p  115 (438)
                      +.+++++|..+-...+.   +   +...   ..+..|+..+.++-..|+....+              ..|+. ++..|+
T Consensus       148 d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~  227 (523)
T 4b4t_S          148 DSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDN  227 (523)
T ss_dssp             -------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSS
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCc
Confidence            67888888887765541   1   1111   11233555555555556554321              12222 223455


Q ss_pred             C--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC--cc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696          116 T--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD--RY---IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (438)
Q Consensus       116 ~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p--~~---~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~  188 (438)
                      .  +.++..+-..|+..+.|+.|.....++.-...  .+   ...+|..|.++...++|.+|.+++..|++..|.+..+.
T Consensus       228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~  307 (523)
T 4b4t_S          228 ETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSL  307 (523)
T ss_dssp             CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCS
T ss_pred             chhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhh
Confidence            5  77788888999999999999999999964322  12   45678899999999999999999999999998776555


Q ss_pred             HHHHHHHHH
Q 013696          189 KQLAEVKSL  197 (438)
Q Consensus       189 ~~l~~a~~~  197 (438)
                      +....+.++
T Consensus       308 gfr~~a~K~  316 (523)
T 4b4t_S          308 GFLQQSNKL  316 (523)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHHHHH
Confidence            555555543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=90.76  E-value=3  Score=46.04  Aligned_cols=96  Identities=8%  Similarity=-0.077  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHh-----ccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC-CccHHHHHHHHH
Q 013696           86 SEKELGNECFKQKKFKEAIDCYSRSI-----ALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLD-DRYIKAYSRRAT  159 (438)
Q Consensus        86 ~~~~~g~~~~~~g~y~~Ai~~y~~al-----~~~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~-p~~~~a~~~lg~  159 (438)
                      .+..+-..|.+.|+.++|...+....     ...|+...|.-+-..|.+.|++++|...|....... .-|...|..+-.
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~  208 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ  208 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            47788889999999999999996643     246889999999999999999999999999998654 235677777777


Q ss_pred             HHHHcCCH-HHHHHHHHHHHhhC
Q 013696          160 ARKELGKL-KESIEDSEFALRLE  181 (438)
Q Consensus       160 a~~~lg~~-~eA~~~~~~al~l~  181 (438)
                      ++.+.|+. ++|...|++...-.
T Consensus       209 glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          209 CMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcC
Confidence            88888985 78889999888654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=90.69  E-value=1.3  Score=41.13  Aligned_cols=60  Identities=15%  Similarity=0.251  Sum_probs=38.1

Q ss_pred             HHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHH
Q 013696           93 ECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK  152 (438)
Q Consensus        93 ~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~  152 (438)
                      .+++.|+.++|+......++.+|. +.....+...++-.|+|+.|..-++.+.+++|....
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            345566666666666666666666 555555666666666666666666666666666543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=90.55  E-value=1.3  Score=47.04  Aligned_cols=44  Identities=16%  Similarity=0.241  Sum_probs=29.7

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRS  110 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~a  110 (438)
                      ..|++++|.+.....     ++...  |..+|..+.+.|+++.|+.+|.++
T Consensus       664 ~~~~~~~A~~~~~~~-----~~~~~--W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          664 KVGQLTLARDLLTDE-----SAEMK--WRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHTCHHHHHHHHTTC-----CCHHH--HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHhh-----CcHhH--HHHHHHHHHHcCCHHHHHHHHHHc
Confidence            556777776664332     22333  678888888888888888888775

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=89.95  E-value=1.4  Score=43.26  Aligned_cols=84  Identities=12%  Similarity=0.031  Sum_probs=65.8

Q ss_pred             CCccchHHHHHhhhcCCCCC--------hhH------------HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHH
Q 013696           62 SRNYDPVSHISSSLMNEEST--------PDA------------TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAY  120 (438)
Q Consensus        62 g~~~eAi~~~~~al~~~p~~--------~~a------------~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~  120 (438)
                      |+...|...+.+++.+-...        ..+            .....++..+...|++.+|+..+.+++..+|- ..+|
T Consensus       129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~  208 (388)
T 2ff4_A          129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLW  208 (388)
T ss_dssp             TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            56667778888888754211        111            11345667788899999999999999999998 8899


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696          121 ANRAMAYLKLRRFQEAEDDCTEALN  145 (438)
Q Consensus       121 ~~la~~~~~l~~~~eA~~~~~~al~  145 (438)
                      ..+-.+|...|+..+|+..|.++..
T Consensus       209 ~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          209 TQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999888754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=88.24  E-value=1.9  Score=45.59  Aligned_cols=77  Identities=17%  Similarity=0.143  Sum_probs=48.6

Q ss_pred             HHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcC
Q 013696           94 CFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLD--------DRYIKAYSRRATARKELG  165 (438)
Q Consensus        94 ~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~--------p~~~~a~~~lg~a~~~lg  165 (438)
                      ....|+++.|.+....    -.+...|.++|..+++.++++.|+.+|.++-..+        ..+.+.+..++......|
T Consensus       662 ~l~~~~~~~A~~~~~~----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~  737 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTD----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTG  737 (814)
T ss_dssp             HHHHTCHHHHHHHHTT----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hhhcCCHHHHHHHHHh----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            3455666666655321    1237889999999999999999999999873322        234444445555555555


Q ss_pred             CHHHHHHHH
Q 013696          166 KLKESIEDS  174 (438)
Q Consensus       166 ~~~eA~~~~  174 (438)
                      ++..|...|
T Consensus       738 ~~~~A~~~~  746 (814)
T 3mkq_A          738 KFNLAFNAY  746 (814)
T ss_dssp             CHHHHHHHH
T ss_pred             chHHHHHHH
Confidence            555554443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=88.02  E-value=7.9  Score=37.93  Aligned_cols=80  Identities=14%  Similarity=0.066  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHhhc----CC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHH
Q 013696          120 YANRAMAYLKLRRFQEAEDDCTEALNL----DD--RYIKAYSRRATARKELGKLKESIEDSEFALRLE---PQNQEIKKQ  190 (438)
Q Consensus       120 ~~~la~~~~~l~~~~eA~~~~~~al~l----~p--~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~---P~~~~~~~~  190 (438)
                      -..+|..|+..|+|.+|...+.+.+.-    |.  .-...+.....+|..+|++..+...|.++....   +.++...+.
T Consensus       102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~  181 (394)
T 3txn_A          102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA  181 (394)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence            346889999999999998888877752    21  124567778888999999999999998887664   355666666


Q ss_pred             HHHHHHHHH
Q 013696          191 LAEVKSLYE  199 (438)
Q Consensus       191 l~~a~~~~~  199 (438)
                      +..+-..+.
T Consensus       182 i~~~~Gi~~  190 (394)
T 3txn_A          182 LDLQSGILH  190 (394)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHhhHHH
Confidence            666555444

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.48  E-value=7.5  Score=38.68  Aligned_cols=97  Identities=12%  Similarity=0.028  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhc----cCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHhh---cCCcc---
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIA----LSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALN---LDDRY---  150 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~----~~p~---~~~~~~la~~~~~l~~~~eA~~~~~~al~---l~p~~---  150 (438)
                      +.....++..|...|+|.+|.........    ..+.   ...+......|+..++|..|...+.++..   -.+..   
T Consensus       137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l  216 (445)
T 4b4t_P          137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL  216 (445)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence            33456889999999999999999887653    2222   67788888999999999999999998742   12222   


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 013696          151 -IKAYSRRATARKELGKLKESIEDSEFALRL  180 (438)
Q Consensus       151 -~~a~~~lg~a~~~lg~~~eA~~~~~~al~l  180 (438)
                       ...+...|..+...++|.+|..+|..++..
T Consensus       217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence             245667888999999999999999999865

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.57  E-value=2.4  Score=47.76  Aligned_cols=90  Identities=18%  Similarity=0.119  Sum_probs=56.3

Q ss_pred             HHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhc---------------------
Q 013696           89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL---------------------  146 (438)
Q Consensus        89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l---------------------  146 (438)
                      .+...+...+.|+-|...    +...|. +...+-+|.+|+..|++++|..+|.+|-.-                     
T Consensus       817 ~l~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            455566667777655442    222333 444567788888888888888888776310                     


Q ss_pred             --CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696          147 --DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (438)
Q Consensus       147 --~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P  182 (438)
                        ....+..|+.....+...|-++.+++....|+...+
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~  930 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE  930 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCC
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence              011244566666677777888888888777777654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=82.08  E-value=13  Score=32.13  Aligned_cols=93  Identities=10%  Similarity=0.086  Sum_probs=61.7

Q ss_pred             HHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC--------ccHHHHHHHHHHHHH
Q 013696           92 NECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD--------RYIKAYSRRATARKE  163 (438)
Q Consensus        92 ~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p--------~~~~a~~~lg~a~~~  163 (438)
                      ......|+++.|.+.....    .+...|..+|...+..|+++-|+.+|.++-..+.        .+..-+..++..-..
T Consensus        13 ~LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~   88 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQT   88 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4456789999998886654    2378899999999999999999999998854331        233344455555555


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696          164 LGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (438)
Q Consensus       164 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (438)
                      .|++.-|...+           -..++++++.++|.
T Consensus        89 ~g~~n~af~~~-----------l~lGdv~~~i~lL~  113 (177)
T 3mkq_B           89 REDFGSMLLNT-----------FYNNSTKERSSIFA  113 (177)
T ss_dssp             TTCHHHHHHHH-----------HHHTCHHHHHHHHH
T ss_pred             CccHHHHHHHH-----------HHcCCHHHHHHHHH
Confidence            56655554332           12445556666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	438
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-07
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	4e-14
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-12
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	3e-12
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-11
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	5e-11
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-10
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	1e-09
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	4e-09
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-08
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	5e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	8e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	7e-05
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	3e-07
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	2e-06
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	1e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-04
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	3e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	4e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.003
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	7e-04

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.6 bits (169), Expect = 2e-14
 Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 6/187 (3%)

Query: 81  TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 139
           +P A   KE GN  F  +K+ EA  CY R+I  +P  AV Y NRA+ YLK+++ ++A  D
Sbjct: 1   SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60

Query: 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ-----EIKKQLAEV 194
           C  AL LD + +KA+      + E+    E+I + + A  L  + +     +I   L   
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120

Query: 195 KSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNL 254
           K      + ++      +      ++   E        Q+       D  I  +      
Sbjct: 121 KKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEA 180

Query: 255 RDESKTE 261
           + +    
Sbjct: 181 KHDKYMA 187

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.0 bits (175), Expect = 2e-14
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 3/138 (2%)

Query: 76  MNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ 134
               S   A     L    ++Q     AID Y R+I L P    AY N A A  +     
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288

Query: 135 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194
           EAED    AL L   +  + +  A  ++E G ++E++     AL + P+       LA V
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348

Query: 195 KSLYEKEVFQKASKTLEK 212
             L ++   Q+A    ++
Sbjct: 349 --LQQQGKLQEALMHYKE 364

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (164), Expect = 6e-13
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALS-PTAVAYANRAMAYLKLRRFQEAEDDCT 141
              +   LGN   + + F  A+  Y R+++LS   AV + N A  Y +      A D   
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261

Query: 142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 201
            A+ L   +  AY   A A KE G + E+ +    ALRL P + +    LA +    E+ 
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI--KREQG 319

Query: 202 VFQKASKTLEK 212
             ++A +   K
Sbjct: 320 NIEEAVRLYRK 330

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (158), Expect = 3e-12
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           L N   +Q   +EA+  Y +++ + P  A A++N A    +  + QEA     EA+ +  
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 149 RYIKAYSRRATARKELG 165
            +  AYS      KE+ 
Sbjct: 371 TFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (157), Expect = 4e-12
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 1/113 (0%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYAN-RAMAYLKLRRFQEAEDDCT 141
              +   L N   ++    EA DCY+ ++ L PT     N  A    +    +EA     
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329

Query: 142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194
           +AL +   +  A+S  A+  ++ GKL+E++   + A+R+ P   +    +   
Sbjct: 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (155), Expect = 8e-12
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           EL +  ++   F+ A     +     P         +  + + RR   +    T A+  +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 148 DRYIKAYSRRATA 160
               +AYS     
Sbjct: 64  PLLAEAYSNLGNV 76

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 28/139 (20%), Positives = 44/139 (31%), Gaps = 17/139 (12%)

Query: 83  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 141
            A +   LG     Q +   AI  + +++ L P    AY N      + R F  A     
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY- 226

Query: 142 EALNLDDRYIK-------AYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 194
                  R +         +   A    E G +  +I+    A+ L+P   +    LA  
Sbjct: 227 ------LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280

Query: 195 KSLYEKEVFQKASKTLEKY 213
             L EK    +A       
Sbjct: 281 --LKEKGSVAEAEDCYNTA 297

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 1e-07
 Identities = 13/73 (17%), Positives = 23/73 (31%)

Query: 122 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 181
             A    +   F+ AE  C +    +          ++   +  +L  S   S  A++  
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 182 PQNQEIKKQLAEV 194
           P   E    L  V
Sbjct: 64  PLLAEAYSNLGNV 76

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (163), Expect = 4e-14
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 1/137 (0%)

Query: 78  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYL-KLRRFQEA 136
           + +   A   K   N+ FK K ++ AI  YS++I L+P+   Y         +   +  A
Sbjct: 4   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 63

Query: 137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
             D T A+ LD +YIK Y RRA +   LGK + ++ D E  ++++P +++ K +  E   
Sbjct: 64  LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 123

Query: 197 LYEKEVFQKASKTLEKY 213
           + +++ F++A    E  
Sbjct: 124 IVKQKAFERAIAGDEHK 140

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 63.1 bits (152), Expect = 2e-12
 Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 19/161 (11%)

Query: 75  LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AV 118
           +  +E    A   KE G   FK  K+ +A+  Y + ++                      
Sbjct: 6   MDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 65

Query: 119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 178
           A+ N AM YLKLR + +A + C +AL LD    K   RR  A+  + + + +  D E  L
Sbjct: 66  AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 125

Query: 179 RLEPQNQEIKKQLAEVKSL---YEKEVFQKASKTLEKYGKS 216
            + PQN+  + Q+   +     + +   +  +   +K+ + 
Sbjct: 126 EVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKFAEQ 166

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 3e-12
 Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 3/137 (2%)

Query: 80  STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD 139
           S  +A S    G     +K +K A+D +S      P +    N    Y  L+   EAE  
Sbjct: 1   SLVEAISLWNEGVLAADKKDWKGALDAFSA--VQDPHSRICFNIGCMYTILKNMTEAEKA 58

Query: 140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK-KQLAEVKSLY 198
            T ++N D     AY +R     +  K   +I+D + AL     NQ I  K L     L+
Sbjct: 59  FTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLF 118

Query: 199 EKEVFQKASKTLEKYGK 215
             EV    +    K  +
Sbjct: 119 ACEVLYNIAFMYAKKEE 135

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 1e-11
 Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 9/126 (7%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 142
           A  EKELGN+ +K+K F  A+  Y ++  L PT      N+A  Y +   + +  + C +
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 143 ALNLD-------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 195
           A+ +         +  KAY+R   +  +  K K++I     +L       ++ K+  + +
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122

Query: 196 SLYEKE 201
            + +++
Sbjct: 123 KILKEQ 128

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 58.5 bits (140), Expect = 5e-11
 Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 17/138 (12%)

Query: 75  LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----------------A 117
             +EE    A   KE GNE FK+ +  EAI  Y  ++                       
Sbjct: 8   YTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 67

Query: 118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA 177
               N A  Y K + + +A D  ++ L +D   +KA  +   A    G L+E+ E+   A
Sbjct: 68  SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 127

Query: 178 LRLEPQNQEIKKQLAEVK 195
             L P N +I+       
Sbjct: 128 ASLNPNNLDIRNSYELCV 145

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 3e-10
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 1/110 (0%)

Query: 88  KELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALN-L 146
           KE GN+        +A+ CYS +I L P      +   A    +   +   +       L
Sbjct: 7   KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 66

Query: 147 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
              + K YSR+A A + L + +E+    E  L+ E  N ++K+ L  +++
Sbjct: 67  KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.1 bits (131), Expect = 1e-09
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 17/135 (12%)

Query: 84  ATSEKELGNECFKQKKFKEAIDCYSRS----------------IALSPT-AVAYANRAMA 126
           +   K +GN  FK + ++ AI  Y++                   L P       N    
Sbjct: 27  SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 86

Query: 127 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 186
            LK+  +Q A D C EAL +D    KA  RRA   + L +  +++ D + A  + P+++ 
Sbjct: 87  KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146

Query: 187 IKKQLAEVKSLYEKE 201
           I+ +L +VK   + +
Sbjct: 147 IQAELLKVKQKIKAQ 161

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 4e-09
 Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 19/164 (11%)

Query: 75  LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSR----------------SIALSPTAV 118
           + +EE    +T  KE G   FK+ K+K+A+  Y +                  A +    
Sbjct: 4   MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 63

Query: 119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 178
           ++ N AM +LKL+ F  A + C +AL LD    K  SRR  A   +   + +  D +  L
Sbjct: 64  SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL 123

Query: 179 RLEPQNQEIKKQLAEVKSL---YEKEVFQKASKTLEKYGKSGMK 219
           +L P N+  K QLA  +           +  +   E+  +   K
Sbjct: 124 QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENK 167

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 1/128 (0%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 147
           E G    ++     A+  +  ++   P    A+        +  +   A       L L 
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 207
                A    A +       +++ E     LR  P    +     E          ++  
Sbjct: 84  PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143

Query: 208 KTLEKYGK 215
            +L     
Sbjct: 144 GSLLSDSL 151

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 92  NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 150
                  + +EA+  Y R++ L P    +  N  ++ + L   +EA +   EALN+  + 
Sbjct: 214 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 273

Query: 151 IKAYSRRATARKE----LGKLKESIEDSEFALRLEPQNQEI 187
                      +     L      +  S+     + ++   
Sbjct: 274 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 314

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 8e-04
 Identities = 21/108 (19%), Positives = 48/108 (44%), Gaps = 1/108 (0%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMA-YLKLRRFQEAEDDCTEALNLDD 148
           LG       ++ +A+DC++ ++++ P      N+  A      + +EA      AL L  
Sbjct: 178 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237

Query: 149 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 196
            YI++      +   LG  +E++E    AL ++ +++  + +   +  
Sbjct: 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 285

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 52.3 bits (125), Expect = 3e-08
 Identities = 15/103 (14%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 91  GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 149
                 + + ++A++    +I  SP  A   ++          F+ A++   +++ L   
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 192
           Y+   S+     K     K+  + +  A  L    +  K  ++
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVS 105

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 42.3 bits (99), Expect = 6e-05
 Identities = 10/105 (9%), Positives = 25/105 (23%), Gaps = 2/105 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPTA-VAYANRAMAYLKLRRFQEAEDDCTEALNLD- 147
                     F+ A +   +SI L P      +         +  ++       A  L  
Sbjct: 36  FIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGE 95

Query: 148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 192
           +  +                ++  E +     L  +   +    +
Sbjct: 96  NEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 12/72 (16%), Positives = 25/72 (34%)

Query: 123 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 182
           +    L   + Q+A +   EA+    +     S         G  + + E    +++L P
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 183 QNQEIKKQLAEV 194
           +      QL  +
Sbjct: 62  EYLPGASQLRHL 73

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 47.8 bits (112), Expect = 3e-07
 Identities = 23/146 (15%), Positives = 43/146 (29%), Gaps = 24/146 (16%)

Query: 79  ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------AVAYANRAM 125
           +    A              ++ EA     R++ +S T             A  +A  A 
Sbjct: 4   KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAE 63

Query: 126 AYLKLRRFQEA-----------EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 174
           A   LR F EA                   +    +I A   RA A   LG+  E++ + 
Sbjct: 64  ALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF 123

Query: 175 EFALRLEPQNQEIKKQLAEVKSLYEK 200
           +  + +  + +        +  +   
Sbjct: 124 KKVVEMIEERKGETPGKERMMEVAID 149

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 16/119 (13%), Positives = 36/119 (30%), Gaps = 6/119 (5%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSP----TAVAYANRAMAYLKLRRFQEAEDDCTEA- 143
            + NE    +   +    +    A       T   YA   +        ++      E  
Sbjct: 4   AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63

Query: 144 -LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 201
                +         A     L + +++++     L+ EPQN + K+    +    +K+
Sbjct: 64  PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 122

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 10/86 (11%), Positives = 23/86 (26%), Gaps = 8/86 (9%)

Query: 89  ELGNECFKQKKFKEAIDCYSRSIALSPTAVA--------YANRAMAYLKLRRFQEAEDDC 140
           ELG   + +  +        +++                    + A  +     +A    
Sbjct: 10  ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69

Query: 141 TEALNLDDRYIKAYSRRATARKELGK 166
            + L LD  + +A          + K
Sbjct: 70  KKLLELDPEHQRANGNLKYFEYIMAK 95

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 5/86 (5%)

Query: 117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR-----YIKAYSRRATARKELGKLKESI 171
           A   A RA   +      EAE     AL           I A S         G+L  S+
Sbjct: 12  AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL 71

Query: 172 EDSEFALRLEPQNQEIKKQLAEVKSL 197
              +   ++  Q+      L  +   
Sbjct: 72  ALMQQTEQMARQHDVWHYALWSLIQQ 97

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 19/123 (15%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
             +      ++ EA D YS+ I  S    ++  +    +LK    Q A  D   A     
Sbjct: 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223

Query: 149 RYIKAYSRRATAR--------------KELGKLKESIEDSEFALRLEPQN----QEIKKQ 190
                    A +R               +  +L E  ++ +  +RL+        +IK+ 
Sbjct: 224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKES 283

Query: 191 LAE 193
           + +
Sbjct: 284 IQQ 286

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 10/87 (11%), Positives = 27/87 (31%), Gaps = 1/87 (1%)

Query: 90  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 148
           LG+    + +  +A   Y  +  L P     Y   A+                 ++ +  
Sbjct: 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217

Query: 149 RYIKAYSRRATARKELGKLKESIEDSE 175
            +  A +    A  +  + ++ ++   
Sbjct: 218 PFPAASTNLQKALSKALESRDEVKTKW 244

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.003
 Identities = 21/127 (16%), Positives = 30/127 (23%), Gaps = 2/127 (1%)

Query: 12  FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHI 71
           F   L             +K+    A  K    S S          G+            
Sbjct: 113 FNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAE 172

Query: 72  SSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK 129
           S      +  P       +L      +      I  Y RSIA+      A  N   A  K
Sbjct: 173 SYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232

Query: 130 LRRFQEA 136
               ++ 
Sbjct: 233 ALESRDE 239

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 2/85 (2%)

Query: 110 SIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK-L 167
            I  S      Y        +  R + A     +A+ L+      +  R    K L K L
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 168 KESIEDSEFALRLEPQNQEIKKQLA 192
            E +      +  +P+N ++     
Sbjct: 95  HEEMNYITAIIEEQPKNYQVWHHRR 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	438
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.75
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.73
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.73
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.72
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.72
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.71
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.71
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.7
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.69
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.69
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.68
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.67
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.65
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.65
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.61
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.58
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.58
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.56
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.55
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.5
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.46
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.44
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.43
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.43
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.43
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.4
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.4
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.39
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.29
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.26
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.24
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.22
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.19
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.17
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.17
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.04
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.96
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.91
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.89
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.84
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.81
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.8
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.68
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.56
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.47
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.36
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.3
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.03
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.89
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.45
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.29

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.2e-18  Score=141.22  Aligned_cols=111  Identities=32%  Similarity=0.529  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 013696           85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE  163 (438)
Q Consensus        85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~  163 (438)
                      ..++..|+.++..|+|++|+.+|+++|.++|. +.+|.++|.||..+|+|++|+.+|.+++.++|+++.+|+++|.++..
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence            34789999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013696          164 LGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (438)
Q Consensus       164 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  195 (438)
                      +|++++|+.+|+++++++|+++.++..+..+.
T Consensus        84 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          84 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            99999999999999999999999988777654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2e-17  Score=142.62  Aligned_cols=116  Identities=35%  Similarity=0.643  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~  162 (438)
                      +..++..|+.|++.|+|++|+.+|.++++++|+ +.+|+++|.||+.+|++++|+.+|.++++++|+++.+|+++|.++.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            455889999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696          163 ELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (438)
Q Consensus       163 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (438)
                      .+|++++|+.+|++++.++|+++.+...+..+...+.
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  126 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK  126 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887777765544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.73  E-value=5.3e-17  Score=139.33  Aligned_cols=118  Identities=27%  Similarity=0.334  Sum_probs=107.6

Q ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 013696           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----------------AVAYANRAMAYLKLRRFQEAEDDCTEALN  145 (438)
Q Consensus        83 ~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----------------~~~~~~la~~~~~l~~~~eA~~~~~~al~  145 (438)
                      .+..++..|+.+|+.|+|.+|+.+|.+++.+.+.                 ..+|.|+|.||+++|+|++|+.+|+++|.
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~   95 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence            3555889999999999999999999999987653                 14688999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013696          146 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (438)
Q Consensus       146 l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~k  200 (438)
                      ++|+++++|+++|.+|..+|++++|+.+|+++++++|++..+...+..+...+.+
T Consensus        96 ~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          96 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888877765543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=9.5e-18  Score=148.92  Aligned_cols=103  Identities=36%  Similarity=0.548  Sum_probs=98.6

Q ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 013696           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  161 (438)
Q Consensus        83 ~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~  161 (438)
                      .+..++..|+.|++.|+|++|+.+|+++|.++|. +.+|+++|.||..+|+|++|+.+|.+|+.++|+++.+|+++|.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            4555889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCH
Q 013696          162 KELGKLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       162 ~~lg~~~eA~~~~~~al~l~P~~~  185 (438)
                      ..+|+|++|+.+|++++.++|.+.
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccH
Confidence            999999999999999999998654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.3e-17  Score=158.48  Aligned_cols=147  Identities=11%  Similarity=0.045  Sum_probs=133.8

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhc-cHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK-KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g-~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~  137 (438)
                      ..+.+++|+..++++|.++|.+..+  |+.+|.++...| ++++|+.+|.+++.++|+ ..+|.++|.++..+|++++|+
T Consensus        55 ~~e~~~~Al~~~~~ai~lnP~~~~a--~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl  132 (315)
T d2h6fa1          55 RDERSERAFKLTRDAIELNAANYTV--WHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQEL  132 (315)
T ss_dssp             HTCCCHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             hCCchHHHHHHHHHHHHHCCCChHH--HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHH
Confidence            6688999999999999999999999  779999999987 599999999999999999 999999999999999999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH----------------HHHHHHHHHH
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL----------------AEVKSLYEKE  201 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l----------------~~a~~~~~ka  201 (438)
                      .++.+++.++|++..+|+++|.++..+|++++|+.+|++++.++|.+..++..+                .+|...+.++
T Consensus       133 ~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~a  212 (315)
T d2h6fa1         133 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM  212 (315)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHH
Confidence            999999999999999999999999999999999999999999999998875443                4566666666


Q ss_pred             Hhhchhh
Q 013696          202 VFQKASK  208 (438)
Q Consensus       202 ~~~~~~~  208 (438)
                      +.+.+..
T Consensus       213 l~~~P~~  219 (315)
T d2h6fa1         213 IKLVPHN  219 (315)
T ss_dssp             HHHSTTC
T ss_pred             HHhCCCc
Confidence            6666443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.5e-17  Score=159.79  Aligned_cols=133  Identities=23%  Similarity=0.246  Sum_probs=73.8

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..|++++|+..|++++.++|+++.+  +..+|.++...|++.+|+..|..++...|. ..++..+|.++..+|++++|+.
T Consensus       249 ~~~~~~~A~~~~~~al~~~p~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  326 (388)
T d1w3ba_         249 EQGLIDLAIDTYRRAIELQPHFPDA--YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR  326 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHTCSSCHHH--HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHH
Confidence            4455555555555555555555544  345555555555555555555555555555 5555555555555555555555


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  194 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a  194 (438)
                      .|+++++++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++..++.+
T Consensus       327 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~  382 (388)
T d1w3ba_         327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT  382 (388)
T ss_dssp             HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555554444443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.2e-17  Score=155.25  Aligned_cols=128  Identities=17%  Similarity=0.232  Sum_probs=119.8

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..+.+.+|+..|.+++.++|+...+..+..+|.++...|++++|+.+|++++..+|+ +.+|+++|.+|..+|++++|+.
T Consensus       148 ~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  227 (323)
T d1fcha_         148 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA  227 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHH
Confidence            446788999999999999998877777889999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          139 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      +|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|++..+
T Consensus       228 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  276 (323)
T d1fcha_         228 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP  276 (323)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhh
Confidence            9999999999999999999999999999999999999999999998775

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.3e-16  Score=139.40  Aligned_cols=117  Identities=32%  Similarity=0.405  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLD  147 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----------------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~  147 (438)
                      +..++..|+.+++.|+|++|+.+|+++|.+.|.                ..+|.|+|.||+++|+|++|+.+|+++|.++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            555889999999999999999999999998764                2668899999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 013696          148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  200 (438)
Q Consensus       148 p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~k  200 (438)
                      |+++.+|+++|.+|..+|+|++|+.+|++++.++|+++.+...+..+...+.+
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  145 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR  145 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998887777665543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.2e-17  Score=154.60  Aligned_cols=185  Identities=11%  Similarity=0.021  Sum_probs=155.6

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL   90 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~   90 (438)
                      .+..+-..++++++++..++.++..|         .....+..+|.+| ..|++++|+..|.+++.++|++..+  +..+
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~P---------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~l   93 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQDP---------KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA--LMAL   93 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCT---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccc--cccc
Confidence            34455566789999999999887664         1223455667777 8899999999999999999998887  6799


Q ss_pred             HHHHHHhccHHHHHHHHHHHhcc-------------------------------------------------CCC---HH
Q 013696           91 GNECFKQKKFKEAIDCYSRSIAL-------------------------------------------------SPT---AV  118 (438)
Q Consensus        91 g~~~~~~g~y~~Ai~~y~~al~~-------------------------------------------------~p~---~~  118 (438)
                      |.+|...|++++|+.+|.+++.+                                                 +|+   +.
T Consensus        94 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~  173 (323)
T d1fcha_          94 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD  173 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred             cccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccc
Confidence            99999999988888777766544                                                 333   45


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------H
Q 013696          119 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------K  188 (438)
Q Consensus       119 ~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~----------~  188 (438)
                      ++.++|.++..+|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|+++++++|+++.+          .
T Consensus       174 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  253 (323)
T d1fcha_         174 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL  253 (323)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHC
Confidence            678899999999999999999999999999999999999999999999999999999999999999887          4


Q ss_pred             HHHHHHHHHHHHHHhhchh
Q 013696          189 KQLAEVKSLYEKEVFQKAS  207 (438)
Q Consensus       189 ~~l~~a~~~~~ka~~~~~~  207 (438)
                      +++.+|+..|.+++.+.+.
T Consensus       254 g~~~~A~~~~~~al~l~p~  272 (323)
T d1fcha_         254 GAHREAVEHFLEALNMQRK  272 (323)
T ss_dssp             TCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCCc
Confidence            5677888888888887644

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.8e-17  Score=155.09  Aligned_cols=187  Identities=20%  Similarity=0.176  Sum_probs=159.4

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHH
Q 013696           12 FQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKEL   90 (438)
Q Consensus        12 l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~   90 (438)
                      +.......+.+++++....+.+...+         .....+..+|..| ..|++++|+..|.+++..+|.....  +..+
T Consensus       175 l~~~~~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l  243 (388)
T d1w3ba_         175 LGCVFNAQGEIWLAIHHFEKAVTLDP---------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV--HGNL  243 (388)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHCT---------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH--HHHH
T ss_pred             hcccccccCcHHHHHHHHHHHHHhCc---------ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHH--HHHH
Confidence            34555666777787777777776543         1122333455556 7899999999999999999888777  6699


Q ss_pred             HHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Q 013696           91 GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE  169 (438)
Q Consensus        91 g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~e  169 (438)
                      |.+++..|++++|+.+|+++++++|+ +.++.++|.+|..+|++.+|+..+..++...|.+..++..+|.++..+|++++
T Consensus       244 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  323 (388)
T d1w3ba_         244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE  323 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHH
Confidence            99999999999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHH----------HHHHHHHHHHHHHHHhhchhhh
Q 013696          170 SIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKT  209 (438)
Q Consensus       170 A~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~ka~~~~~~~~  209 (438)
                      |+..|+++++++|++..+          .+++.+|...|++++.+++...
T Consensus       324 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~  373 (388)
T d1w3ba_         324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA  373 (388)
T ss_dssp             HHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999887          3456788888888888776543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.69  E-value=2.7e-16  Score=136.90  Aligned_cols=116  Identities=30%  Similarity=0.413  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcC
Q 013696           84 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLD  147 (438)
Q Consensus        84 a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~----------------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~  147 (438)
                      +..++..|+.+++.|+|.+|+.+|.++|.+.+.                ..+|.|+|.||+++|+|.+|+.+|++++.++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            455889999999999999999999999975432                3568899999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696          148 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (438)
Q Consensus       148 p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (438)
                      |+++++|+++|.+|..+|+|++|+.+|.+++.++|+++.+...+..+...+.
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  146 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK  146 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999887777765544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.4e-17  Score=157.32  Aligned_cols=173  Identities=9%  Similarity=0.050  Sum_probs=150.5

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCC-CccchHHHHHhhhcCCCCChhHHHHH
Q 013696           11 DFQGFLNDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYS-RNYDPVSHISSSLMNEESTPDATSEK   88 (438)
Q Consensus        11 ~l~~~~~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g-~~~eAi~~~~~al~~~p~~~~a~~~~   88 (438)
                      .++..+...+.++++++..++.+...|.         ....+...|.++ .+| ++++|+..+.+++.++|++..+  |.
T Consensus        48 ~~~~~~~~~e~~~~Al~~~~~ai~lnP~---------~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a--~~  116 (315)
T d2h6fa1          48 YFRAVLQRDERSERAFKLTRDAIELNAA---------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV--WH  116 (315)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH--HH
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHCCC---------ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhH--HH
Confidence            4556677778889999999999987651         222333444444 455 5899999999999999999998  77


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC-
Q 013696           89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK-  166 (438)
Q Consensus        89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~-  166 (438)
                      .+|.++...|++++|+.+|.++++++|. ..+|+++|.++..+|++++|+.+|.++|+++|.+..+|+++|.++..+|+ 
T Consensus       117 ~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         117 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcccc
Confidence            9999999999999999999999999999 99999999999999999999999999999999999999999999999887 


Q ss_pred             -----HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013696          167 -----LKESIEDSEFALRLEPQNQEIKKQLAEV  194 (438)
Q Consensus       167 -----~~eA~~~~~~al~l~P~~~~~~~~l~~a  194 (438)
                           +++|+..+.+++.++|++..++..+..+
T Consensus       197 ~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~l  229 (315)
T d2h6fa1         197 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGI  229 (315)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             chhhhhHHhHHHHHHHHHhCCCchHHHHHHHHH
Confidence                 5799999999999999999887665433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.67  E-value=6.7e-16  Score=134.29  Aligned_cols=113  Identities=29%  Similarity=0.455  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccC----------------CC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALS----------------PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR  149 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~----------------p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~  149 (438)
                      ++..|+.++..|+|.+|+..|.++|.+.                |. ..+|.|+|.||.++|+|++|+.+|++||.++|+
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  109 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  109 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence            6789999999999999999999998653                33 568999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 013696          150 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  199 (438)
Q Consensus       150 ~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  199 (438)
                      ++.+|+++|.+|..+|+|++|+.+|+++++++|++..+...+..+...+.
T Consensus       110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~  159 (169)
T d1ihga1         110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  159 (169)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888777765544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=8.4e-16  Score=127.62  Aligned_cols=115  Identities=25%  Similarity=0.424  Sum_probs=102.3

Q ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccH-------HHH
Q 013696           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI-------KAY  154 (438)
Q Consensus        83 ~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~-------~a~  154 (438)
                      .|..++++|+.++..|+|++|+.+|+++|+++|. +.+++++|.||..+|+|++|+.+|.+++.++|.+.       .+|
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            4566889999999999999999999999999999 99999999999999999999999999999998764       578


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 013696          155 SRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  198 (438)
Q Consensus       155 ~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~  198 (438)
                      +++|.++..++++++|+.+|++++.++|. ++....+.++.+.+
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~l  125 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKIL  125 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence            88999999999999999999999999875 56666666555443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=7.9e-16  Score=141.50  Aligned_cols=131  Identities=17%  Similarity=0.068  Sum_probs=117.8

Q ss_pred             cCCCccchHHHHHhhhcCCCCC--hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEEST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  136 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~--~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA  136 (438)
                      ...+.+.|+..+.+++...+..  ..+..++.+|.+|+..|+|++|+.+|.+++.++|+ +.+|+++|.+|..+|++++|
T Consensus        11 ~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A   90 (259)
T d1xnfa_          11 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   90 (259)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHh
Confidence            3446678888889988754422  24556889999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 013696          137 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ  190 (438)
Q Consensus       137 ~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  190 (438)
                      +.+|++++.++|+++.+++++|.++..+|++++|+..|+++++++|.+......
T Consensus        91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  144 (259)
T d1xnfa_          91 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLW  144 (259)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHH
Confidence            999999999999999999999999999999999999999999999998776433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=9.4e-16  Score=136.49  Aligned_cols=120  Identities=20%  Similarity=0.182  Sum_probs=108.2

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      ..|+|++|+..|.++   .+.++.+  ++++|.+|+..|+|++|+.+|+++|+++|+ +.+|+++|.||..+|+|++|+.
T Consensus        17 ~~~d~~~Al~~~~~i---~~~~~~~--~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~   91 (192)
T d1hh8a_          17 DKKDWKGALDAFSAV---QDPHSRI--CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK   91 (192)
T ss_dssp             HTTCHHHHHHHHHTS---SSCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHhc---CCCCHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHH
Confidence            678999999999875   3444555  889999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHhhcCCcc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          139 DCTEALNLDDRY----------------IKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       139 ~~~~al~l~p~~----------------~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      +|++|+...+.+                ..+++++|.++..+|++++|++.|.+++.+.|..
T Consensus        92 ~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          92 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            999999765432                5789999999999999999999999999999874

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.1e-15  Score=140.47  Aligned_cols=157  Identities=15%  Similarity=0.067  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhcc
Q 013696           21 DWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKK   99 (438)
Q Consensus        21 ~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~   99 (438)
                      +++.++....+.+.....     ..+.....+..+|.+| ..|++++|+..|+++|.++|+++.+  ++.+|.+|...|+
T Consensus        14 ~~e~al~~~~e~l~~~~~-----~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a--~~~lg~~~~~~g~   86 (259)
T d1xnfa_          14 QQEVILARMEQILASRAL-----TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV--FNYLGIYLTQAGN   86 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCC-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHH--HhhhchHHHHHHH
Confidence            445555555555543321     1111223445667777 8999999999999999999999988  7799999999999


Q ss_pred             HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013696          100 FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL  178 (438)
Q Consensus       100 y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al  178 (438)
                      |++|+.+|++++.++|+ +.+++++|.+|..+|++++|+.+|+++++++|.+...+..++.++...+..+.+........
T Consensus        87 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (259)
T d1xnfa_          87 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  166 (259)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence            99999999999999999 99999999999999999999999999999999999888888888888887766666666666


Q ss_pred             hhCCCC
Q 013696          179 RLEPQN  184 (438)
Q Consensus       179 ~l~P~~  184 (438)
                      ...+..
T Consensus       167 ~~~~~~  172 (259)
T d1xnfa_         167 KSDKEQ  172 (259)
T ss_dssp             HSCCCS
T ss_pred             ccchhh
Confidence            655544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.6e-15  Score=123.78  Aligned_cols=102  Identities=17%  Similarity=0.173  Sum_probs=97.2

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~  137 (438)
                      +..|+|++|+..|.++|..+|.++.+  |..+|.+|...|+|++|+..|.+++.++|+ +.+|+++|.+|..+|+|++|+
T Consensus        14 ~~~g~~~eAi~~~~~al~~~p~~~~~--~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~   91 (117)
T d1elwa_          14 LSVGNIDDALQCYSEAIKLDPHNHVL--YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAK   91 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCcchhh--hhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHH
Confidence            37899999999999999999999988  779999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHH
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARK  162 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~  162 (438)
                      .+|++++.++|+++.++..++.+..
T Consensus        92 ~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          92 RTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            9999999999999999999887653

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.9e-15  Score=120.11  Aligned_cols=109  Identities=13%  Similarity=0.040  Sum_probs=97.7

Q ss_pred             HHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh---cCHHHHHHHHHHHhhcCCcc--HHHHHHHHHHHH
Q 013696           89 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL---RRFQEAEDDCTEALNLDDRY--IKAYSRRATARK  162 (438)
Q Consensus        89 ~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l---~~~~eA~~~~~~al~l~p~~--~~a~~~lg~a~~  162 (438)
                      ++++.+...+++++|.+.|++++.++|. +.+++|+|.|+.+.   +++++|+..|++++..+|.+  +.+|+++|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            6788999999999999999999999999 99999999999874   46678999999999998765  568999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 013696          163 ELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL  197 (438)
Q Consensus       163 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~  197 (438)
                      .+|+|++|+.+|+++|+++|++.++......+...
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999987666555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.1e-15  Score=131.64  Aligned_cols=100  Identities=27%  Similarity=0.263  Sum_probs=91.4

Q ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 013696           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  162 (438)
Q Consensus        83 ~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~  162 (438)
                      ++..+++.|..++..|+|+.|+.+|.++  ..|++.+|+|+|.||..+|+|++|+.+|++||+++|+++.+|+++|.++.
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i--~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~   81 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   81 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            4555778999999999999999999874  23448899999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCC
Q 013696          163 ELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       163 ~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      .+|+|++|+.+|++++...+.+
T Consensus        82 ~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          82 QTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTC
T ss_pred             hhccHHHHHHHHHHHHHhCccC
Confidence            9999999999999999887654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8e-15  Score=125.96  Aligned_cols=102  Identities=15%  Similarity=0.131  Sum_probs=96.8

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~  137 (438)
                      |..|+|++|+..|.+++.++|++..+  |..+|.+|+..|++++|+.+|.++++++|. ..+|.++|.+|..+|+|++|+
T Consensus        21 ~~~~~y~~A~~~~~~al~~~p~~~~~--~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~   98 (159)
T d1a17a_          21 FKAKDYENAIKFYSQAIELNPSNAIY--YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL   98 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHhhhccccchhhhhh--hhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHH
Confidence            48999999999999999999999888  779999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHH
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARK  162 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~  162 (438)
                      .+|.+++.++|+++.++..++.+..
T Consensus        99 ~~~~~a~~~~p~~~~~~~~l~~~~~  123 (159)
T d1a17a_          99 RDYETVVKVKPHDKDAKMKYQECNK  123 (159)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            9999999999999999888877654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.55  E-value=1.2e-14  Score=117.56  Aligned_cols=92  Identities=15%  Similarity=0.062  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcC
Q 013696           87 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  165 (438)
Q Consensus        87 ~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg  165 (438)
                      .+.+|..+++.|++.+|+.+|++++.++|+ +.+|.++|.+|..+|++++|+.++++++.++|+++.+|+.+|.+|..+|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            568999999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHH
Q 013696          166 KLKESIEDSEFAL  178 (438)
Q Consensus       166 ~~~eA~~~~~~al  178 (438)
                      ++++|++.|++.|
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999986

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=4e-15  Score=131.58  Aligned_cols=114  Identities=11%  Similarity=0.042  Sum_probs=98.0

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  132 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~  132 (438)
                      .|..| ..|+|++|+..|.++|.++|.++.+  |.++|.+|.+.|+|++|+.+|.+++.++|+ +.+|+++|.+|..+|+
T Consensus        10 ~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~--~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~   87 (201)
T d2c2la1          10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVY--YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES   87 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence            34455 8899999999999999999999888  779999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHH
Q 013696          133 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES  170 (438)
Q Consensus       133 ~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA  170 (438)
                      |++|+.+|++|+.++|++...+...+..+...++...+
T Consensus        88 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~  125 (201)
T d2c2la1          88 YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW  125 (201)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999987665554445444444443333

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.46  E-value=1.9e-13  Score=115.71  Aligned_cols=104  Identities=19%  Similarity=0.106  Sum_probs=86.6

Q ss_pred             HHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHh----------cCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 013696           92 NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL----------RRFQEAEDDCTEALNLDDRYIKAYSRRATA  160 (438)
Q Consensus        92 ~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l----------~~~~eA~~~~~~al~l~p~~~~a~~~lg~a  160 (438)
                      ..|-+.+.|++|+.+|+++++++|+ +.+++++|.++..+          +.+++|+..|++|++++|+++.+|+++|.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            3456677888888888888888888 88888888888754          456789999999999999999999999999


Q ss_pred             HHHcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013696          161 RKELGK-----------LKESIEDSEFALRLEPQNQEIKKQLAEVK  195 (438)
Q Consensus       161 ~~~lg~-----------~~eA~~~~~~al~l~P~~~~~~~~l~~a~  195 (438)
                      |..+|+           |.+|+.+|++++.++|++..++..++.+.
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence            988764           68999999999999999988866665443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2e-13  Score=118.64  Aligned_cols=112  Identities=16%  Similarity=0.165  Sum_probs=100.5

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChh-------------HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPD-------------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA  124 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~-------------a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la  124 (438)
                      |..|+|++|+..|+++|...|....             ...+.++|.+|++.|+|++|+.+++++|.++|+ +.+|+++|
T Consensus        24 ~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g  103 (170)
T d1p5qa1          24 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRG  103 (170)
T ss_dssp             HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHH
Confidence            4889999999999999988765421             233668999999999999999999999999998 99999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHH
Q 013696          125 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES  170 (438)
Q Consensus       125 ~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA  170 (438)
                      .||..+|+|++|+.+|++++.++|+++.+...++.++..++.+.+.
T Consensus       104 ~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1         104 EAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998887776554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.43  E-value=8.3e-14  Score=117.99  Aligned_cols=113  Identities=12%  Similarity=0.054  Sum_probs=98.8

Q ss_pred             CCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHh----------ccHHHHHHHHHHHhccCCC-HHHHHHH
Q 013696           56 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ----------KKFKEAIDCYSRSIALSPT-AVAYANR  123 (438)
Q Consensus        56 ~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~----------g~y~~Ai~~y~~al~~~p~-~~~~~~l  123 (438)
                      +..| +++.|++|+..|++++.++|+++.+  +..+|.++...          +.+++|+.+|+++++++|+ +.+|+++
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~P~~~~~--~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~l   81 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSNPLDADN--LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI   81 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhCCcchHH--HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhH
Confidence            4445 6788999999999999999999999  66999999854          5568999999999999999 9999999


Q ss_pred             HHHHHHhcC-----------HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHH
Q 013696          124 AMAYLKLRR-----------FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES  170 (438)
Q Consensus       124 a~~~~~l~~-----------~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA  170 (438)
                      |.+|..+|+           |.+|+.+|++|+.++|++..++..++.+....+.+.++
T Consensus        82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999988764           79999999999999999999999999887666555554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.2e-14  Score=114.16  Aligned_cols=103  Identities=10%  Similarity=0.028  Sum_probs=93.3

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHH---hccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHhcCH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK---QKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRF  133 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~---~g~y~~Ai~~y~~al~~~p~---~~~~~~la~~~~~l~~~  133 (438)
                      ..+++++|.+.|++++.++|.++.+  ++++|+++++   .+++.+|+..|++++..+|.   ..+|+++|.+|..+|+|
T Consensus        11 ~~~~l~~Ae~~Y~~aL~~~p~~~~~--~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~   88 (122)
T d1nzna_          11 SVEDLLKFEKKFQSEKAAGSVSKST--QFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY   88 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHH--HHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhh
Confidence            4567899999999999999999998  6699999986   56677899999999999876   56899999999999999


Q ss_pred             HHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 013696          134 QEAEDDCTEALNLDDRYIKAYSRRATARKEL  164 (438)
Q Consensus       134 ~eA~~~~~~al~l~p~~~~a~~~lg~a~~~l  164 (438)
                      ++|+.+|++++.++|++..|...++.+...+
T Consensus        89 ~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          89 EKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999998877654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.43  E-value=1.2e-13  Score=118.09  Aligned_cols=103  Identities=25%  Similarity=0.262  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCc
Q 013696           83 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR  149 (438)
Q Consensus        83 ~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~  149 (438)
                      .++.+...|+.++..|+|++|+..|+++|+++|.             +.+|.|+|.||..+|+|++|+.+|++++.+.|.
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            4544556699999999999999999999998764             367999999999999999999999999987542


Q ss_pred             -----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696          150 -----------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       150 -----------~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~  185 (438)
                                 ...+++++|.+|..+|++++|+.+|++++.+.|...
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence                       356799999999999999999999999999976553

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.40  E-value=6e-13  Score=115.22  Aligned_cols=111  Identities=15%  Similarity=0.174  Sum_probs=98.3

Q ss_pred             CcCCCccchHHHHHhhhcCCCCCh-------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTP-------------DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA  124 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~-------------~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la  124 (438)
                      |..|+|.+|+..|.+++...+...             .+..+.++|.+|++.|+|.+|+.+|++++.++|. ..+|+++|
T Consensus        26 ~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~  105 (168)
T d1kt1a1          26 FKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG  105 (168)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHH
Confidence            488999999999999997543321             1233668999999999999999999999999999 99999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Q 013696          125 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE  169 (438)
Q Consensus       125 ~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~e  169 (438)
                      .||..+|+|++|+.+|.+++.++|++..++..++.+...++.+.+
T Consensus       106 ~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         106 EAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHH
Confidence            999999999999999999999999999999999999887776654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.40  E-value=6.9e-13  Score=113.08  Aligned_cols=108  Identities=15%  Similarity=0.142  Sum_probs=96.3

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChh--------------HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPD--------------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR  123 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~--------------a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~l  123 (438)
                      |..|+|.+|+..|.+++...+....              ...+.++|.+|++.|+|++|+.+|.++|.++|. ..+|+++
T Consensus        28 f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~  107 (153)
T d2fbna1          28 FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKL  107 (153)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHh
Confidence            4789999999999999986654321              233678999999999999999999999999999 9999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Q 013696          124 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK  166 (438)
Q Consensus       124 a~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~  166 (438)
                      |.+|..+|+|++|+.+|.+++.++|++..+...++.+...+++
T Consensus       108 g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1         108 GVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988776643

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.39  E-value=4.1e-13  Score=116.25  Aligned_cols=112  Identities=13%  Similarity=0.177  Sum_probs=98.2

Q ss_pred             cCCCccchHHHHHhhhcCCCCC--------------hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEEST--------------PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA  124 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~--------------~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la  124 (438)
                      ..|+|.+|+..|.++|...+..              ..+..+.++|.++++.|+|++|+.+|+++|+++|+ +.+|+++|
T Consensus        39 ~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g  118 (169)
T d1ihga1          39 KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRA  118 (169)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHH
Confidence            7789999999999998643211              12334778999999999999999999999999999 99999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH
Q 013696          125 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI  171 (438)
Q Consensus       125 ~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~  171 (438)
                      .+|..+|+|++|+.+|.+++.++|++..++..++.++..+..+.++.
T Consensus       119 ~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         119 QGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988877766653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=4.3e-12  Score=121.26  Aligned_cols=169  Identities=9%  Similarity=-0.087  Sum_probs=116.7

Q ss_pred             HhHHHHHHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcC---cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHH
Q 013696           17 NDLQDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN---SYSRNYDPVSHISSSLMNEESTPDATSEKELGNE   93 (438)
Q Consensus        17 ~~l~~we~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y---~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~   93 (438)
                      ...+.+++++......++..+...         ..+...|.++   ..+++++|+..+.+++..+|++..+. +...|.+
T Consensus        84 ~~~~~~~~al~~~~~~l~~~pk~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~-~~~~~~~  153 (334)
T d1dcea1          84 ESAALVKAELGFLESCLRVNPKSY---------GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCW-DYRRFVA  153 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcH---------HHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhh-hhHHHHH
Confidence            344556677777677666543111         1111122222   33456777777777777777766653 2356677


Q ss_pred             HHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhc-----------------------------------------
Q 013696           94 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-----------------------------------------  131 (438)
Q Consensus        94 ~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~-----------------------------------------  131 (438)
                      +...|.+++|+.++++++.++|. ..+|.++|.++..+|                                         
T Consensus       154 ~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~  233 (334)
T d1dcea1         154 AQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHR  233 (334)
T ss_dssp             HHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHH
T ss_pred             HHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            77777777777777777777777 777777777666654                                         


Q ss_pred             -----------------------CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 013696          132 -----------------------RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  188 (438)
Q Consensus       132 -----------------------~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~  188 (438)
                                             ++.+|+..+.+++..+|.+..+|+.+|.++..+|++++|+.+|+++++++|.+...+
T Consensus       234 ~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~  313 (334)
T d1dcea1         234 WLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL  313 (334)
T ss_dssp             HHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence                                   466677777777788888888899999999999999999999999999999888877


Q ss_pred             HHHHHHH
Q 013696          189 KQLAEVK  195 (438)
Q Consensus       189 ~~l~~a~  195 (438)
                      ..+....
T Consensus       314 ~~L~~~~  320 (334)
T d1dcea1         314 DDLRSKF  320 (334)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=9.5e-12  Score=97.05  Aligned_cols=79  Identities=11%  Similarity=0.050  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhccCCC--------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHH
Q 013696           86 SEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRR  157 (438)
Q Consensus        86 ~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--------~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~l  157 (438)
                      .++.+|..+++.|+|.+|+.+|++|+++.|.        +.++.++|.||.++|++++|+.+|+++|.++|+++.++.++
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            3678888888888888888888888877532        56788888888888888888888888888888888888887


Q ss_pred             HHHHHHc
Q 013696          158 ATARKEL  164 (438)
Q Consensus       158 g~a~~~l  164 (438)
                      +.....+
T Consensus        87 ~~~~~~l   93 (95)
T d1tjca_          87 KYFEYIM   93 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7665544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=7.1e-12  Score=103.32  Aligned_cols=101  Identities=11%  Similarity=0.133  Sum_probs=87.8

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC--------HHHHHHHHH
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAM  125 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--------~~~~~~la~  125 (438)
                      +|..| ..|+|++|+.+|+++|.++|++..+  +.++|.+|+..|+|++|+.+|.+++.++|.        +.+|.++|.
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~--~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTY--ITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcccHHH--HHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            34444 8899999999999999999998887  779999999999999999999999999875        467889999


Q ss_pred             HHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 013696          126 AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA  158 (438)
Q Consensus       126 ~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg  158 (438)
                      ++..+++|++|+.+|.+++..+++ +.....+.
T Consensus        88 ~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~  119 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQ  119 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHH
Confidence            999999999999999999998775 44444443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=3.3e-12  Score=120.08  Aligned_cols=133  Identities=12%  Similarity=0.065  Sum_probs=64.1

Q ss_pred             CCCCCcC-cCCCccchHHHHHhhhcCCCCCh----hHHHHHHHHHHHHH-hccHHHHHHHHHHHhccCCC-------HHH
Q 013696           53 KPSPSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFK-QKKFKEAIDCYSRSIALSPT-------AVA  119 (438)
Q Consensus        53 ~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~----~a~~~~~~g~~~~~-~g~y~~Ai~~y~~al~~~p~-------~~~  119 (438)
                      ..+|.+| ..|++++|+.+|++++.+.+...    .+..+..+|.+|.. .|+|++|+.+|.+++.+.+.       ..+
T Consensus        81 ~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~  160 (290)
T d1qqea_          81 VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC  160 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhH
Confidence            3344444 45555555555555555332221    12224455555543 35555555555555554211       344


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHhhcCCccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696          120 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYI-------KAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       120 ~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~-------~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~  185 (438)
                      +.++|.+|..+|+|++|+..|.+++...+.+.       ..+++.|.++...|++..|...+++++.++|...
T Consensus       161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~  233 (290)
T d1qqea_         161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA  233 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred             HHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc
Confidence            55555555555555555555555555544331       2344555555555555555555555555555433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.22  E-value=5.3e-11  Score=95.58  Aligned_cols=74  Identities=18%  Similarity=0.145  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013696          118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL  191 (438)
Q Consensus       118 ~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l  191 (438)
                      ..++++|.++...|++.+|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|+++++++|++..++..+
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   90 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL   90 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999884333

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.9e-12  Score=127.73  Aligned_cols=134  Identities=12%  Similarity=-0.025  Sum_probs=93.9

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD  139 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~  139 (438)
                      ..+.|..|+..|.+++.++|.+..+  +..+|..+.+.|++..|+..|.+++..+| ..++.++|.++...++|++|+.+
T Consensus        98 a~~~Y~~ai~~l~~~~~l~~~~~~~--~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~LG~l~~~~~~~~~A~~~  174 (497)
T d1ya0a1          98 ASGFYTQLLQELCTVFNVDLPCRVK--SSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESY  174 (497)
T ss_dssp             HHHHHHHHHHHHTC---------------------------------CCHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCChhhHHH--HHHhHHHHHhCCCHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcccHHHHHHH
Confidence            3466788888888888888888777  66999999999999999999999988766 46788999999999999999999


Q ss_pred             HHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696          140 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (438)
Q Consensus       140 ~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  196 (438)
                      |.+|+.++|++..+|+.+|.++...|++.+|+.+|.+++.++|..+.+..++..+..
T Consensus       175 y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999888876654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=6.1e-11  Score=92.30  Aligned_cols=82  Identities=16%  Similarity=0.094  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 013696          117 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-------IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK  189 (438)
Q Consensus       117 ~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~-------~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~  189 (438)
                      +.-++++|.+++..|+|.+|+.+|++|+.+.|.+       +.++.++|.++..+|++++|+.+|+++|+++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4557899999999999999999999999886543       688999999999999999999999999999999999988


Q ss_pred             HHHHHHHHH
Q 013696          190 QLAEVKSLY  198 (438)
Q Consensus       190 ~l~~a~~~~  198 (438)
                      ++......+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            887655544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=1.6e-10  Score=110.07  Aligned_cols=131  Identities=11%  Similarity=0.064  Sum_probs=114.4

Q ss_pred             ccchHHHHHhhhcCCCCChhHHHHHHHHHH----------HHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcC
Q 013696           64 NYDPVSHISSSLMNEESTPDATSEKELGNE----------CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  132 (438)
Q Consensus        64 ~~eAi~~~~~al~~~p~~~~a~~~~~~g~~----------~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~  132 (438)
                      .++|+..+.++|..+|++..+  |..++.+          +...|.+.+|+.+|++++..+|. ..+|+++|.++..+++
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a--~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~  122 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATL--WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE  122 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred             cHHHHHHHHHHHHHCCCcHHH--HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc
Confidence            478999999999999999887  4344444          44556799999999999999999 9999999999888775


Q ss_pred             --HHHHHHHHHHHhhcCCccHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013696          133 --FQEAEDDCTEALNLDDRYIKAY-SRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  196 (438)
Q Consensus       133 --~~eA~~~~~~al~l~p~~~~a~-~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  196 (438)
                        +++|+..+.+++.++|.+..++ +.+|.++...|++++|+..+++++.++|.+..++..++.+..
T Consensus       123 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~  189 (334)
T d1dcea1         123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP  189 (334)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence              8999999999999999998886 577899999999999999999999999999999877766554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=1.4e-11  Score=115.62  Aligned_cols=132  Identities=11%  Similarity=-0.056  Sum_probs=110.7

Q ss_pred             CCCcC-cCCCccchHHHHHhhhcCCCC----ChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHH
Q 013696           55 SPSGN-SYSRNYDPVSHISSSLMNEES----TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYAN  122 (438)
Q Consensus        55 ~~~~y-~~g~~~eAi~~~~~al~~~p~----~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~  122 (438)
                      .|..| ..++|++|+..|.+++.+...    ...+..+.++|.+|...|++++|+.+|.+++.+.+.       ..++.+
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            34556 788999999999999986321    123456889999999999999999999999998543       677889


Q ss_pred             HHHHHHH-hcCHHHHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 013696          123 RAMAYLK-LRRFQEAEDDCTEALNLDDR------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  186 (438)
Q Consensus       123 la~~~~~-l~~~~eA~~~~~~al~l~p~------~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~  186 (438)
                      +|.+|.. +|++++|+..|.+|+.+.+.      ...++.++|.++..+|+|++|+..|++++.+.|.+..
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~  193 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh
Confidence            9988865 69999999999999987432      3567999999999999999999999999999987754

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.04  E-value=1.4e-10  Score=98.64  Aligned_cols=91  Identities=15%  Similarity=0.150  Sum_probs=79.7

Q ss_pred             cCCCccchHHHHHhhhcCCCCChh----------HHHHHHHHHHHHHhccHHHHHHHHHHHhccCC-------C-----H
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPD----------ATSEKELGNECFKQKKFKEAIDCYSRSIALSP-------T-----A  117 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~----------a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p-------~-----~  117 (438)
                      ..|+|++|+..|+++|.+.|+.+.          +..+.++|.+|...|+|++|+.+|.+++.+.|       .     .
T Consensus        21 ~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  100 (156)
T d2hr2a1          21 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWI  100 (156)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhH
Confidence            679999999999999998877643          45688999999999999999999999998743       2     4


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcc
Q 013696          118 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY  150 (438)
Q Consensus       118 ~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~  150 (438)
                      .+++++|.+|..+|++++|+.+|++|+.+.|..
T Consensus       101 ~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1         101 SAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            578999999999999999999999999987643

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.96  E-value=7.4e-09  Score=89.99  Aligned_cols=99  Identities=14%  Similarity=0.079  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----------------------HHHHHHHHHHHHHhcCHHHHHHHHH
Q 013696           85 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----------------------AVAYANRAMAYLKLRRFQEAEDDCT  141 (438)
Q Consensus        85 ~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----------------------~~~~~~la~~~~~l~~~~eA~~~~~  141 (438)
                      ..+...|......|++++|+.+|.+++.+.+.                       ..++.++|.++..+|++++|+.+|+
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~   91 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE   91 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            34778999999999999999999999998754                       1578899999999999999999999


Q ss_pred             HHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhhCCC
Q 013696          142 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA-------LRLEPQ  183 (438)
Q Consensus       142 ~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~a-------l~l~P~  183 (438)
                      +++.++|.+..+|..++.++..+|++.+|+..|+++       |-++|.
T Consensus        92 ~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          92 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            999999999999999999999999999999999998       446665

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.91  E-value=8.3e-10  Score=102.27  Aligned_cols=127  Identities=8%  Similarity=-0.047  Sum_probs=111.3

Q ss_pred             CcCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHH
Q 013696           59 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  137 (438)
Q Consensus        59 y~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~  137 (438)
                      +..|++++|+..|+++++.+|++..+  +..+|.+|+..|++++|+..|+++++++|+ ..++.+++.++...+...++.
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~a--r~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASL--RSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence            46799999999999999999999999  559999999999999999999999999999 888888898888888777776


Q ss_pred             HHHHHHhh-cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 013696          138 DDCTEALN-LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  187 (438)
Q Consensus       138 ~~~~~al~-l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~  187 (438)
                      ..+.+... .+|.....+...+.++...|++++|...+.+++.+.|..+..
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~  135 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL  135 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence            65555433 356777888899999999999999999999999999987644

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3e-09  Score=107.33  Aligned_cols=113  Identities=12%  Similarity=-0.007  Sum_probs=84.9

Q ss_pred             ccCCCCCCcC-cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHH
Q 013696           50 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY  127 (438)
Q Consensus        50 ~~~~~~~~~y-~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~  127 (438)
                      ..+..+|..| ..|++.+|+..+.+++..++.    ..+..+|.++...|+|++|+.+|.+|+.++|+ +.+|+++|.+|
T Consensus       121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~  196 (497)
T d1ya0a1         121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ----HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILA  196 (497)
T ss_dssp             ----------------------CCHHHHHHHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHH
T ss_pred             HHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH----HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            3456677777 889999999999999887642    34779999999999999999999999999999 99999999999


Q ss_pred             HHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Q 013696          128 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK  166 (438)
Q Consensus       128 ~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~  166 (438)
                      ...|++.+|+.+|.+|+.++|.++.|+.+++.++....+
T Consensus       197 ~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         197 SSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999876553

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=1.4e-08  Score=94.59  Aligned_cols=125  Identities=9%  Similarity=-0.012  Sum_probs=108.5

Q ss_pred             cCCCccchHHHHHhhhcCCCCChh---HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPD---ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLK  129 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~---a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-------~~~~~~la~~~~~  129 (438)
                      ..|++++|+..|++++...|.+..   +..+..+|.+|+..|++++|+..|.+++.+.+.       ..++.+++.++..
T Consensus        24 ~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (366)
T d1hz4a_          24 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA  103 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            779999999999999999987643   344778999999999999999999999987532       5678999999999


Q ss_pred             hcCHHHHHHHHHHHhhcCC--------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 013696          130 LRRFQEAEDDCTEALNLDD--------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  184 (438)
Q Consensus       130 l~~~~eA~~~~~~al~l~p--------~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~  184 (438)
                      .|++..|...+.+++.+.+        ....++..+|.++...|+++.|...+.+++...+..
T Consensus       104 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~  166 (366)
T d1hz4a_         104 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  166 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh
Confidence            9999999999999987643        234577889999999999999999999999988754

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=3.8e-08  Score=92.38  Aligned_cols=142  Identities=9%  Similarity=0.009  Sum_probs=100.1

Q ss_pred             CCccchHHHHHhhhcC-CCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHHHH
Q 013696           62 SRNYDPVSHISSSLMN-EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAED  138 (438)
Q Consensus        62 g~~~eAi~~~~~al~~-~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA~~  138 (438)
                      +..++|...|++++.. .|.....  |...+..+...|+++.|...|.+++...|.  ..+|...+......|+++.|..
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l--~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~  155 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLL--YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM  155 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence            3456677778887764 4554444  557777777788888888888888877775  4567777777777788888888


Q ss_pred             HHHHHhhcCCccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHH----------HHHHHHHHHHHHHHhhc
Q 013696          139 DCTEALNLDDRYIKAYSRRATARK-ELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       139 ~~~~al~l~p~~~~a~~~lg~a~~-~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~ka~~~~  205 (438)
                      .|.+++...|.+...|...|.... ..|+.+.|...|++++...|.++..+          +++.+|+..|++++...
T Consensus       156 i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~  233 (308)
T d2onda1         156 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  233 (308)
T ss_dssp             HHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence            888888888877777777776543 35777778888888888888777652          34455666666665543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=3.1e-08  Score=92.99  Aligned_cols=125  Identities=11%  Similarity=-0.089  Sum_probs=111.8

Q ss_pred             cCCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHH-HhcCHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL-KLRRFQEAE  137 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~-~l~~~~eA~  137 (438)
                      ..|+++.|...|++++...|.+.. ..|...+......|+++.|...|.+++...|. ...|...|.... ..|+.+.|.
T Consensus       111 ~~~~~~~a~~i~~~~l~~~~~~~~-~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~  189 (308)
T d2onda1         111 SRMKYEKVHSIYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTH-HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHH
Confidence            779999999999999999887643 22668899999999999999999999999998 788888887644 468999999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  185 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~  185 (438)
                      ..|++++...|+++..|...+..+...|+++.|...|++++...|.++
T Consensus       190 ~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999999999999999999999999999887654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=2.4e-08  Score=92.87  Aligned_cols=123  Identities=13%  Similarity=-0.074  Sum_probs=100.2

Q ss_pred             cCCCccchHHHHHhhhcCCCCC-----hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHH
Q 013696           60 SYSRNYDPVSHISSSLMNEEST-----PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLK  129 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~-----~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-----~~~~~~la~~~~~  129 (438)
                      ..+++.++...+.++.......     .....+...|..+...|+++.|..++.+++...+.     ...+.++|.+|..
T Consensus       184 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  263 (366)
T d1hz4a_         184 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL  263 (366)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            5678888888888777643322     12333667888999999999999999999988764     5667889999999


Q ss_pred             hcCHHHHHHHHHHHhh------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 013696          130 LRRFQEAEDDCTEALN------LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  182 (438)
Q Consensus       130 l~~~~eA~~~~~~al~------l~p~~~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P  182 (438)
                      +|++++|+..+++++.      ..|....++..+|.+|..+|++++|+..|++++.+.+
T Consensus       264 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         264 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999874      4466788899999999999999999999999998864

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.56  E-value=2.5e-08  Score=92.06  Aligned_cols=118  Identities=14%  Similarity=0.122  Sum_probs=95.1

Q ss_pred             HHHHHHhccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Q 013696           91 GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE  169 (438)
Q Consensus        91 g~~~~~~g~y~~Ai~~y~~al~~~p~-~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~lg~~~e  169 (438)
                      +...+..|++++|+..|.++++.+|. +.++.++|.+|+..|++++|+..|+++++++|++..++..++.++...+...+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            34567899999999999999999999 99999999999999999999999999999999999999999999988888877


Q ss_pred             HHHHHHHHHhhC-CCCHHH----------HHHHHHHHHHHHHHHhhchhh
Q 013696          170 SIEDSEFALRLE-PQNQEI----------KKQLAEVKSLYEKEVFQKASK  208 (438)
Q Consensus       170 A~~~~~~al~l~-P~~~~~----------~~~l~~a~~~~~ka~~~~~~~  208 (438)
                      +...+.....+. |.....          .++.++|...+.++....+..
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~  132 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  132 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence            766655544443 322221          345667777777766665443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=1.8e-06  Score=69.09  Aligned_cols=77  Identities=12%  Similarity=0.005  Sum_probs=64.3

Q ss_pred             CCHHHHHHHHHHHHHhc---CHHHHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 013696          115 PTAVAYANRAMAYLKLR---RFQEAEDDCTEALNLDDRY-IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ  190 (438)
Q Consensus       115 p~~~~~~~la~~~~~l~---~~~eA~~~~~~al~l~p~~-~~a~~~lg~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  190 (438)
                      +...+.|+.|.|+.+..   +..+|+..++.++..+|.+ ..++|.+|.+|.++|+|++|..+++++|+++|+|..+..-
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            34778888888888764   4568999999999888876 4799999999999999999999999999999999887543


Q ss_pred             H
Q 013696          191 L  191 (438)
Q Consensus       191 l  191 (438)
                      .
T Consensus       113 ~  113 (124)
T d2pqrb1         113 K  113 (124)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.36  E-value=9.6e-07  Score=76.19  Aligned_cols=84  Identities=12%  Similarity=0.028  Sum_probs=75.0

Q ss_pred             cCCCccchHHHHHhhhcCCCCChh--------------------HHHHHHHHHHHHHhccHHHHHHHHHHHhccCCC-HH
Q 013696           60 SYSRNYDPVSHISSSLMNEESTPD--------------------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AV  118 (438)
Q Consensus        60 ~~g~~~eAi~~~~~al~~~p~~~~--------------------a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~-~~  118 (438)
                      ..|++++|+..|.+++.+.+....                    ...+..+|.++...|+|++|+.++++++.++|. ..
T Consensus        23 ~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~  102 (179)
T d2ff4a2          23 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP  102 (179)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHH
Confidence            568899999999999998764421                    123678999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHH
Q 013696          119 AYANRAMAYLKLRRFQEAEDDCTEA  143 (438)
Q Consensus       119 ~~~~la~~~~~l~~~~eA~~~~~~a  143 (438)
                      +|.+++.+|..+|++.+|+..|+++
T Consensus       103 ~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2         103 LWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9999999999999999999999998

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=1.9e-06  Score=68.99  Aligned_cols=82  Identities=6%  Similarity=0.015  Sum_probs=70.6

Q ss_pred             hhHHHHHHHHHHHHHh---ccHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHH
Q 013696           82 PDATSEKELGNECFKQ---KKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  156 (438)
Q Consensus        82 ~~a~~~~~~g~~~~~~---g~y~~Ai~~y~~al~~~p~--~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~  156 (438)
                      +.....++.|+++.+.   ++..+||.+++.++..+|.  ..+++++|.+|.++|+|++|..+++++|+++|++..+...
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            3445577999999876   5567999999999999986  6899999999999999999999999999999999998877


Q ss_pred             HHHHHHH
Q 013696          157 RATARKE  163 (438)
Q Consensus       157 lg~a~~~  163 (438)
                      +-.+...
T Consensus       113 ~~~Ie~~  119 (124)
T d2pqrb1         113 KSMVEDK  119 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.03  E-value=3e-05  Score=62.75  Aligned_cols=112  Identities=12%  Similarity=-0.000  Sum_probs=91.6

Q ss_pred             CCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----hcCHHHHH
Q 013696           62 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK----LRRFQEAE  137 (438)
Q Consensus        62 g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~----l~~~~eA~  137 (438)
                      .|+++|+.+|.++.+..  +..+  ++.+|.  ....++++|+.+|.++.+.. ++.+++++|.+|..    ..++.+|+
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a--~~~l~~--~~~~~~~~a~~~~~~aa~~g-~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFG--CLSLVS--NSQINKQKLFQYLSKACELN-SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTH--HHHHHT--CTTSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhh--hhhhcc--ccccCHHHHHHHHhhhhccc-chhhhhhHHHhhhhccccchhhHHHH
Confidence            36789999999998765  4455  446664  44678999999999998753 37889999999986    56899999


Q ss_pred             HHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Q 013696          138 DDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLEP  182 (438)
Q Consensus       138 ~~~~~al~l~p~~~~a~~~lg~a~~~----lg~~~eA~~~~~~al~l~P  182 (438)
                      .+|+++...  .++.+.+++|.+|..    ..++.+|+.+|+++.++..
T Consensus        80 ~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          80 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            999999986  578999999999987    4689999999999988764

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.89  E-value=8.8e-05  Score=66.55  Aligned_cols=97  Identities=16%  Similarity=0.235  Sum_probs=82.9

Q ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHhhcCCccHHHHHHH
Q 013696           82 PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK----LRRFQEAEDDCTEALNLDDRYIKAYSRR  157 (438)
Q Consensus        82 ~~a~~~~~~g~~~~~~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~----l~~~~eA~~~~~~al~l~p~~~~a~~~l  157 (438)
                      |.+  ++.+|..++..++|.+|+.+|+++.+.. +..+++++|.+|..    ..++..|..++..+...+  ++.++..+
T Consensus         2 p~~--~~~lG~~~~~~~d~~~A~~~~~kAa~~g-~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l   76 (265)
T d1ouva_           2 PKE--LVGLGAKSYKEKDFTQAKKYFEKACDLK-ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL   76 (265)
T ss_dssp             HHH--HHHHHHHHHHTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             HHH--HHHHHHHHHHCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcc
Confidence            445  7799999999999999999999998753 48889999999998    679999999999998754  78888999


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHhhCCC
Q 013696          158 ATARKE----LGKLKESIEDSEFALRLEPQ  183 (438)
Q Consensus       158 g~a~~~----lg~~~eA~~~~~~al~l~P~  183 (438)
                      |.++..    .++...|...++.+....+.
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~  106 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYA  106 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhhh
Confidence            988875    46788999999999877653

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.45  E-value=0.00072  Score=60.25  Aligned_cols=113  Identities=12%  Similarity=0.122  Sum_probs=55.9

Q ss_pred             CCCccchHHHHHhhhcCCCCChhHHHHHHHHHHHHH----hccHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----hcC
Q 013696           61 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK----LRR  132 (438)
Q Consensus        61 ~g~~~eAi~~~~~al~~~p~~~~a~~~~~~g~~~~~----~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~----l~~  132 (438)
                      ..+...|+..|+.+....+  ..+  ...+|..+..    ......|+..+.+..... ....++++|.+|..    ..+
T Consensus        87 ~~~~~~a~~~~~~a~~~g~--~~a--~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~L~~~~~~~~~~~~~  161 (265)
T d1ouva_          87 SQNTNKALQYYSKACDLKY--AEG--CASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-DGDGCTILGSLYDAGRGTPKD  161 (265)
T ss_dssp             CCCHHHHHHHHHHHHHTTC--HHH--HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCC
T ss_pred             chhhHHHHHHHhhhhhhhh--hhH--HHhhcccccCCCcccchhHHHHHHhhhhhccc-ccchhhhhhhhhccCCCcccc
Confidence            3455666667766665442  222  2344444443    334555555555443321 14445555555554    234


Q ss_pred             HHHHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 013696          133 FQEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRL  180 (438)
Q Consensus       133 ~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~----lg~~~eA~~~~~~al~l  180 (438)
                      ...+..++..+..  ..++.+++++|.+|..    ..++++|+.+|+++...
T Consensus       162 ~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~  211 (265)
T d1ouva_         162 LKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL  211 (265)
T ss_dssp             HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred             cccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc
Confidence            4455555555543  2345555555555554    34555555555555554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.29  E-value=0.00053  Score=55.00  Aligned_cols=102  Identities=16%  Similarity=0.066  Sum_probs=77.0

Q ss_pred             hccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHH
Q 013696           97 QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIE  172 (438)
Q Consensus        97 ~g~y~~Ai~~y~~al~~~p~~~~~~~la~~~~~l~~~~eA~~~~~~al~l~p~~~~a~~~lg~a~~~----lg~~~eA~~  172 (438)
                      ..++++|+.+|.++.+..- +.+++++|.  ....++++|+.++.++...  .++.+++.+|.+|..    ..++.+|+.
T Consensus         6 ~kd~~~A~~~~~kaa~~g~-~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELNE-MFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTTC-TTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCCC-hhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            3588999999999988752 445555653  3467899999999999875  579999999999986    567899999


Q ss_pred             HHHHHHhhCCCCHHHH--------------HHHHHHHHHHHHHHhhc
Q 013696          173 DSEFALRLEPQNQEIK--------------KQLAEVKSLYEKEVFQK  205 (438)
Q Consensus       173 ~~~~al~l~P~~~~~~--------------~~l~~a~~~~~ka~~~~  205 (438)
                      +|+++....  ++.+.              .++.+|..+|.++..+.
T Consensus        81 ~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          81 YYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            999998875  34442              23556666666665543