Citrus Sinensis ID: 013703

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
MAISVPLHQLTYSFFSNPQGQWKWCAKPSYSFSNNSQNNIRAIKASVETPPFPLFQNPKLEETPADGLEPADPDFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARTDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWHSGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQDRILF
cccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccEEEcccccHHHHcccccHHHHHHHHHHHHccccccHHHHHHHccccccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHccccccccccccEEEEEEcccEEEEEEEccccccccEEEEccccccccHHHHHHcccccccccccEEEEccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccccccccccccEEEcccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccEEEEEEEEEEEEccEEEcccccccEEEEcccccccccccccHHHHHHHHHHHHHcccccccHHHHHHcccccccccccEccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccHcccccHHHHHHHHHHHHHHHccccccccccccccEEEEEHHHHHccccccccEEEEcccccEEEEEEEcccccccccEEEEEccccccHHHHHHHcccccccccccEEEEcccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
maisvplhqltysffsnpqgqwkwcakpsysfsnnsQNNIRAIKasvetppfplfqnpkleetpadglepadpdfykigyVRSMRAYgvefkegpdgfgvfaskdieprrrarTDWDLRLACLLLYAFDQDDNFWQLygdflpnadeCTSLLLATEEDlmelqdpnlASTMREQQKRAREFWEknwhsgvplkikrlahdpeRFIWAVSIAQSRCINMQVRIGALvqdanmlipyadmlnhsfqpncffhWRFKDRMLEVMVNAGqhvrrgeeMTVNYMHGQMNDMlmqrygfsspvnpwnviqfsgdariHLDSFLSVfnisglpeeyyhnskissdeesfIDGAVIAAArtlptwsdgdvplvpsIERKAVKELQEECRQMLaefpttskqdQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQDRILF
maisvplhQLTYSFFSNPQGQWKWCAKPSYSFSNNSQNNIRAIKASVETPPFPLFQNPKLEetpadglepadPDFYKIGYVRSMRAYGVEfkegpdgfgvfaskdieprrrARTDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREfweknwhsgvplKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTlptwsdgdvplVPSIERKAVKELQEECRQMlaefpttskqdqkmldsmkepRRTLEAAIKYRLHRKLFIDKVIKALDIYQDRILF
MAISVPLHQLTYSFFSNPQGQWKWCAKPSYSFSNNSQNNIRAIKASVETPPFPLFQNPKLEETPADGLEPADPDFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARTDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWHSGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQDRILF
*****PLHQLTYSFFSNPQGQWKWCAKPSYSF*****************************************DFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARTDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATE***********************EFWEKNWHSGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTLPTWSDGDVPLVPSI***************************************LEAAIKYRLHRKLFIDKVIKALDIYQDRI**
********QLTYSFFSNPQGQWKWCAKP*******************************************DPDFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARTDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWHSGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLAEFPTTSKQ***************EAAIKYRLHRKLFIDKVIKALDIYQDRILF
MAISVPLHQLTYSFFSNPQGQWKWCAKPSYSFSNNSQNNIRAIKASVETPPFPLFQNPKLEETPADGLEPADPDFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARTDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLAS********AREFWEKNWHSGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQDRILF
****VPLHQLTYSFFSNPQGQWKWCAKPSYSFSNNSQNNIRAIKASVETPPFPLFQNPKLEETPADGLEPADPDFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARTDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWHSGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQDRILF
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MAISVPLHQLTYSFFSNPQGQWKWCAKPSYSFSNNSQNNIRAIKASVETPPFPLFQNPKLEETPADGLEPADPDFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRARTDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWHSGVPLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQDRILF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query438 2.2.26 [Sep-21-2011]
Q9XI84482 [Fructose-bisphosphate al no no 0.726 0.659 0.256 1e-10
P94026491 Ribulose-1,5 bisphosphate N/A no 0.668 0.596 0.226 7e-10
Q43088489 Ribulose-1,5 bisphosphate N/A no 0.691 0.619 0.218 6e-07
P58467439 SET domain-containing pro yes no 0.383 0.382 0.236 2e-05
>sp|Q9XI84|RBCMT_ARATH [Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=LSMT-L PE=1 SV=1 Back     alignment and function desciption
 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 170/367 (46%), Gaps = 49/367 (13%)

Query: 100 VFASKDIEPRRRARTDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDL 159
           V ASK I P       W + +A  L+    ++++ W++Y D LP + + T  +  +EE+L
Sbjct: 105 VTASK-IGPLCGGLKPW-VSVALFLIREKYEEESSWRVYLDMLPQSTDST--VFWSEEEL 160

Query: 160 MELQDPN-LASTMREQQKRAREFWEKNWHSGVPLK---IKRLAHDPERFIWAVSIAQSRC 215
            EL+    L++T+  ++    EF +      +P K     R+  D   FIWA  I +SR 
Sbjct: 161 AELKGTQLLSTTLGVKEYVENEFLKLEQEILLPNKDLFSSRITLDD--FIWAFGILKSRA 218

Query: 216 INMQVRIGALVQDANMLIPYADMLNHSFQPNCF-FHWRFK-----DRMLEVMVNAGQHVR 269
            + ++R   LV     LIP AD++NH+       + +  K      R L   + +  +V+
Sbjct: 219 FS-RLRGQNLV-----LIPLADLINHNPAIKTEDYAYEIKGAGLFSRDLLFSLKSPVYVK 272

Query: 270 RGEEMTVNYMHGQMNDMLMQRYGF--SSPV-NPWNVI-------QFSGDA-------RIH 312
            GE++ + Y   + N  L   YGF  S+P  N + +         F GD        ++ 
Sbjct: 273 AGEQVYIQYDLNKSNAELALDYGFVESNPKRNSYTLTIEIPESDPFFGDKLDIAESNKMG 332

Query: 313 LDSFLSVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTLPTWSDGDVPLVPSIERKA 372
              +  + +   LP       ++ +      D  ++ +      W   ++P+  + E   
Sbjct: 333 ETGYFDIVDGQTLPAGMLQYLRLVALGGP--DAFLLESIFNNTIWGHLELPVSRTNEELI 390

Query: 373 VKELQEECRQMLAEFPTTSKQDQKMLDSMK-EPRRTLEAAIKYRLHRKLFIDKVIKALD- 430
            + +++ C+  L+ F TT ++D+K+LD  K EPR  LE A+K R+  K    +V++ +D 
Sbjct: 391 CRVVRDACKSALSGFDTTIEEDEKLLDKGKLEPR--LEMALKIRIGEK----RVLQQIDQ 444

Query: 431 IYQDRIL 437
           I++DR L
Sbjct: 445 IFKDREL 451
Methylates 'Lys-14' of the large subunit of RuBisCO.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2EC: 7
>sp|P94026|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum GN=RBCMT PE=2 SV=1 Back     alignment and function description
>sp|Q43088|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Pisum sativum GN=RBCMT PE=1 SV=1 Back     alignment and function description
>sp|P58467|SETD4_MOUSE SET domain-containing protein 4 OS=Mus musculus GN=Setd4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query438
359473101482 PREDICTED: uncharacterized protein LOC10 0.993 0.902 0.727 0.0
255574450483 conserved hypothetical protein [Ricinus 0.993 0.900 0.714 0.0
449454790482 PREDICTED: ribulose-1,5 bisphosphate car 0.995 0.904 0.685 0.0
356530082482 PREDICTED: ribulose-1,5 bisphosphate car 0.997 0.906 0.681 0.0
42566980483 plastid transcriptionally active 14 prot 0.990 0.898 0.657 0.0
62320136483 hypothetical protein [Arabidopsis thalia 0.990 0.898 0.655 0.0
110740216483 hypothetical protein [Arabidopsis thalia 0.990 0.898 0.655 0.0
297804126483 PTAC14 [Arabidopsis lyrata subsp. lyrata 0.990 0.898 0.663 0.0
356556146483 PREDICTED: ribulose-1,5 bisphosphate car 1.0 0.906 0.687 0.0
226499862494 uncharacterized protein LOC100279779 [Ze 0.890 0.789 0.592 1e-149
>gi|359473101|ref|XP_002275523.2| PREDICTED: uncharacterized protein LOC100264713 [Vitis vinifera] gi|297738036|emb|CBI27237.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/485 (72%), Positives = 396/485 (81%), Gaps = 50/485 (10%)

Query: 1   MAISVPLHQLTYSFFSNPQGQWKWC-----AKPSYSFSNNSQNNIRAIKASVETPPFPLF 55
           MA S  LH  T+ F S+ QG   +C     ++P+YS+   S NNIR IKA+VE PPFPLF
Sbjct: 1   MASSPLLHHPTHCFISSNQG---FCNGLSSSRPNYSWMRGSGNNIRPIKAAVEMPPFPLF 57

Query: 56  QNPKLEETPADGLEPADPDFYKIGYVRSMRAYGVEFKEGPDGFGVFASKDIEPRRRAR-- 113
           + P++E      LEPADPDFYKIGYVRS+RAYGVEFKEGPDGFGV+ASKD+EP RRAR  
Sbjct: 58  EPPQIESDTPSQLEPADPDFYKIGYVRSVRAYGVEFKEGPDGFGVYASKDVEPLRRARMI 117

Query: 114 ----------------------------------------TDWDLRLACLLLYAFDQDDN 133
                                                   TDWDLRLACLLL+AFDQ+DN
Sbjct: 118 MEIPLELMLTIRKKLPWMFFPDIVPVGHPIFDIINSTNPETDWDLRLACLLLFAFDQEDN 177

Query: 134 FWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWHSGVPLK 193
           FWQLYGDFLP+  ECTSLLLA EEDL+ELQDP LASTMR+QQ+RA EFWEKNWHSGVPLK
Sbjct: 178 FWQLYGDFLPSEGECTSLLLAKEEDLLELQDPKLASTMRDQQRRASEFWEKNWHSGVPLK 237

Query: 194 IKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRF 253
           IKRLA DP RFIWAVSIAQSRCINMQ+RIGALVQDANMLIPYADMLNHSFQPNCFFHWRF
Sbjct: 238 IKRLARDPNRFIWAVSIAQSRCINMQMRIGALVQDANMLIPYADMLNHSFQPNCFFHWRF 297

Query: 254 KDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHL 313
           KDRMLEVM+NAGQ +++GEEMTVNYM G  NDMLMQRYGFSSPVNPW+VIQFSG+A+IHL
Sbjct: 298 KDRMLEVMINAGQRIKKGEEMTVNYMSGLKNDMLMQRYGFSSPVNPWDVIQFSGNAQIHL 357

Query: 314 DSFLSVFNISGLPEEYYHNSKISSDEESFIDGAVIAAARTLPTWSDGDVPLVPSIERKAV 373
           DSFLSVFNISGLPEEYYHNS++S++ +SF+DGAVIAAARTLPTWSDGDVP +PS+ERKAV
Sbjct: 358 DSFLSVFNISGLPEEYYHNSRLSNNGDSFVDGAVIAAARTLPTWSDGDVPPMPSMERKAV 417

Query: 374 KELQEECRQMLAEFPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQ 433
           K+LQEEC+QML EFPTTS+QDQK+LDSM E RRTLEAAIKYRLHRKL I+KVI+ALDIYQ
Sbjct: 418 KQLQEECQQMLLEFPTTSEQDQKILDSMTEERRTLEAAIKYRLHRKLLIEKVIQALDIYQ 477

Query: 434 DRILF 438
           +RILF
Sbjct: 478 ERILF 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255574450|ref|XP_002528137.1| conserved hypothetical protein [Ricinus communis] gi|223532435|gb|EEF34228.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449454790|ref|XP_004145137.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus] gi|449471403|ref|XP_004153299.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus] gi|449474044|ref|XP_004154058.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus] gi|449503343|ref|XP_004161955.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356530082|ref|XP_003533613.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|42566980|ref|NP_193746.3| plastid transcriptionally active 14 protein [Arabidopsis thaliana] gi|28393566|gb|AAO42203.1| unknown protein [Arabidopsis thaliana] gi|28973141|gb|AAO63895.1| unknown protein [Arabidopsis thaliana] gi|110740232|dbj|BAF02014.1| hypothetical protein [Arabidopsis thaliana] gi|332658878|gb|AEE84278.1| plastid transcriptionally active 14 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|62320136|dbj|BAD94330.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110740216|dbj|BAF02006.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297804126|ref|XP_002869947.1| PTAC14 [Arabidopsis lyrata subsp. lyrata] gi|297315783|gb|EFH46206.1| PTAC14 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356556146|ref|XP_003546388.1| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|226499862|ref|NP_001146209.1| uncharacterized protein LOC100279779 [Zea mays] gi|219886187|gb|ACL53468.1| unknown [Zea mays] gi|219888379|gb|ACL54564.1| unknown [Zea mays] gi|413948639|gb|AFW81288.1| hypothetical protein ZEAMMB73_810642 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query438
TAIR|locus:2119822483 PTAC14 "plastid transcriptiona 0.776 0.703 0.726 1.9e-140
TAIR|locus:2014764482 LSMT-L "lysine methyltransfera 0.730 0.663 0.254 2.4e-11
TAIR|locus:2024066476 AT1G24610 "AT1G24610" [Arabido 0.447 0.411 0.262 3.9e-08
ASPGD|ASPL0000031671 707 AN5630 [Emericella nidulans (t 0.365 0.226 0.280 1.9e-05
POMBASE|SPBC1709.13c 547 set10 "ribosomal lysine methyl 0.381 0.305 0.251 0.00016
ZFIN|ZDB-GENE-050808-2440 setd4 "SET domain containing 4 0.404 0.402 0.257 0.00019
CGD|CAL0004649433 orf19.4007 [Candida albicans ( 0.449 0.454 0.219 0.00032
MGI|MGI:2136890439 Setd4 "SET domain containing 4 0.385 0.384 0.243 0.00032
TAIR|locus:2119822 PTAC14 "plastid transcriptionally active 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1374 (488.7 bits), Expect = 1.9e-140, P = 1.9e-140
 Identities = 250/344 (72%), Positives = 301/344 (87%)

Query:    95 PDGFGVFASKDIEPRRRARTDWDLRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLA 154
             P G  +F   DI        DWD+RLACLLL++FD+DD+FW+LYGDFLP ADEC+SLLLA
Sbjct:   144 PIGHPIF---DIINSTDPEIDWDIRLACLLLFSFDRDDHFWRLYGDFLPAADECSSLLLA 200

Query:   155 TEEDLMELQDPNLASTMREQQKRAREFWEKNWHSGVPLKIKRLAHDPERFIWAVSIAQSR 214
             TEEDL ELQDP+L ST+R+QQKR  +FWEKNWHSGVPLKIKRLA DPERFIWAVS+AQ+R
Sbjct:   201 TEEDLAELQDPDLVSTIRQQQKRILDFWEKNWHSGVPLKIKRLAEDPERFIWAVSMAQTR 260

Query:   215 CINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEM 274
             CI+MQ R+GALVQ+ NM+IPYADMLNHSF+PNCF HWR KDRMLEVM NAGQ +++GEEM
Sbjct:   261 CISMQTRVGALVQELNMMIPYADMLNHSFEPNCFLHWRPKDRMLEVMSNAGQDIKKGEEM 320

Query:   275 TVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYYHNSK 334
             T+NYM GQ N+MLM+RYGFS+PVNPW+ I+FSGD+RIHL+SFLSVFNI GLPEEYYH+S+
Sbjct:   321 TINYMPGQKNNMLMERYGFSTPVNPWDAIKFSGDSRIHLNSFLSVFNIYGLPEEYYHDSE 380

Query:   335 ISSDEESFIDGAVIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLAEFPTTSKQD 394
             +S  + +F+DGAVIAAARTLPTWSD D+P +PS ERKAVKELQ+ECR+MLAE+PTT++QD
Sbjct:   381 LSRGD-TFVDGAVIAAARTLPTWSDIDLPPIPSAERKAVKELQDECRKMLAEYPTTAEQD 439

Query:   395 QKMLDSMKEPRRTLEAAIKYRLHRKLFIDKVIKALDIYQDRILF 438
             QK+LDSM E R T   A+KYR+HRK+FI K+IKALDIYQ+R+L+
Sbjct:   440 QKLLDSMSEARTTFATAVKYRMHRKMFIGKIIKALDIYQERLLY 483
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009295 "nucleoid" evidence=IDA
GO:0009508 "plastid chromosome" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006399 "tRNA metabolic process" evidence=RCA
GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA
GO:0009658 "chloroplast organization" evidence=RCA
GO:0010103 "stomatal complex morphogenesis" evidence=RCA
GO:0042793 "transcription from plastid promoter" evidence=RCA
GO:0045036 "protein targeting to chloroplast" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2014764 LSMT-L "lysine methyltransferase (LSMT)-like" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024066 AT1G24610 "AT1G24610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000031671 AN5630 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPBC1709.13c set10 "ribosomal lysine methyltransferase Set10" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050808-2 setd4 "SET domain containing 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
CGD|CAL0004649 orf19.4007 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
MGI|MGI:2136890 Setd4 "SET domain containing 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query438
pfam00856113 pfam00856, SET, SET domain 6e-11
pfam09273128 pfam09273, Rubis-subs-bind, Rubisco LSMT substrate 4e-06
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 3e-05
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information 
 Score = 59.0 bits (143), Expect = 6e-11
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 228 DANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEEMTVNY 278
           DA  L   A  +NHS +PNC   + F +    ++V A + ++ GEE+T++Y
Sbjct: 62  DATGLGNVARFINHSCEPNCEVRFVFVNGGDRIVVRALRDIKPGEELTIDY 112

SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure. Length = 113
>gnl|CDD|220161 pfam09273, Rubis-subs-bind, Rubisco LSMT substrate-binding Back     alignment and domain information
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 438
KOG1337472 consensus N-methyltransferase [General function pr 99.97
KOG1338466 consensus Uncharacterized conserved protein [Funct 99.93
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.56
PF09273128 Rubis-subs-bind: Rubisco LSMT substrate-binding; I 99.43
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 98.46
KOG1085392 consensus Predicted methyltransferase (contains a 96.65
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 95.81
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 95.72
KOG2589453 consensus Histone tail methylase [Chromatin struct 95.2
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 94.87
COG2940480 Proteins containing SET domain [General function p 88.99
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 86.9
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 80.47
>KOG1337 consensus N-methyltransferase [General function prediction only] Back     alignment and domain information 
Probab=99.97  E-value=1e-29  Score=266.08  Aligned_cols=301  Identities=24%  Similarity=0.269  Sum_probs=222.0

Q ss_pred             HHHHHHHHHHh-CCCCCchHHHhhhCCCCCCCCccccCCHHHHhccCCCcHHHHHHHHHHHHHHHHH---HHhhcCCCcc
Q 013703          118 LRLACLLLYAF-DQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWE---KNWHSGVPLK  193 (438)
Q Consensus       118 ~~LAl~Ll~e~-~g~~S~w~pYl~~LP~~~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~i~~~~~---~~~~~~~p~~  193 (438)
                      +.++++|+++. .+..|.|.+|+..||...  ++|++|..+++..|++++....+..++..+...+.   ++... .+..
T Consensus       112 ~~l~~~l~~~~~~~~~s~w~~~i~~l~~~~--~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  188 (472)
T KOG1337|consen  112 IALALFLLLEWAHGEISKWKPYISTLPSQY--NSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAELLEVLQS-HPSL  188 (472)
T ss_pred             HHHHHHHHHhhhccccccchhhhhhchhhc--CCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHHHHHHHh-cccc
Confidence            67899999998 666699999999999994  78999999999999999999988887766655332   22211 1111


Q ss_pred             cc---ccCCCHHHHHHHHHHhhhceeeeccccc---ccccccceecchhcccCCCCCCCceeEEEeeCCeeEEEEEeccC
Q 013703          194 IK---RLAHDPERFIWAVSIAQSRCINMQVRIG---ALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQH  267 (438)
Q Consensus       194 ~~---~~~~t~e~f~WA~~~V~SRaf~~~~~~~---~~~~~~~~LvP~~Dm~NH~~~~n~~~~~~~~~~~~~~~l~a~r~  267 (438)
                      +.   ...++++.|.||+++|.||+|+......   +......+|+|++||+||++.. +...++..++.  +.+++.++
T Consensus       189 ~~~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~-~~~~~~~~d~~--~~l~~~~~  265 (472)
T KOG1337|consen  189 FGSDLFDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEV-IKAGYNQEDEA--VELVAERD  265 (472)
T ss_pred             ccccccCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchh-ccccccCCCCc--EEEEEeee
Confidence            11   1227899999999999999999987631   1235789999999999999987 45666666655  77899999


Q ss_pred             CCCCceEEEccCCCCCcHHHHHhCCccCCCCCCCeEEecccccccc---chhhhhhhhcCCCcccccceeecCCCCcccc
Q 013703          268 VRRGEEMTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHL---DSFLSVFNISGLPEEYYHNSKISSDEESFID  344 (438)
Q Consensus       268 i~~GeEv~isYG~~~~N~~LL~~YGFv~~~Np~D~v~l~~~~~~~~---d~~l~~l~~~gl~~~~~~~~~l~~~~~~~ld  344 (438)
                      |++||||||+||+++ |++||++|||+.++||+|.|.+.+.+....   ......+...+++....  +.+-..+...  
T Consensus       266 v~~geevfi~YG~~~-N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--  340 (472)
T KOG1337|consen  266 VSAGEEVFINYGPKS-NAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGE--FSILLTGEPV--  340 (472)
T ss_pred             ecCCCeEEEecCCCc-hHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCce--EEEeecCCch--
Confidence            999999999999995 999999999999999999999987765311   11122233444444322  2222211111  


Q ss_pred             HHHHHHH---Hhcc------------------CCCCCCCCCCchHHHHHHHHHHHH-HHHHHHcCCCChHHHHHHHhcCC
Q 013703          345 GAVIAAA---RTLP------------------TWSDGDVPLVPSIERKAVKELQEE-CRQMLAEFPTTSKQDQKMLDSMK  402 (438)
Q Consensus       345 ~~Ll~al---R~l~------------------~~~~~~~~~~~~~E~~~~~~L~~~-~~~~L~~y~TtleeD~~~L~~~~  402 (438)
                      ..++.+.   +.+.                  .+.....+.+.++|.+.+..+... |...+..+.+++++|+..+... 
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~vl~~~-  419 (472)
T KOG1337|consen  341 SEMLLLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDESVLKDN-  419 (472)
T ss_pred             hhhhhhhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhhhhccc-
Confidence            0111111   1110                  111223456678999999999999 8889999999999999888863 


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013703          403 EPRRTLEAAIKYRLHRKLFIDKVIKALD  430 (438)
Q Consensus       403 ~~s~r~~~A~~~R~~eK~IL~~~l~~L~  430 (438)
                      .++.+..++..++..+|+||.+.+..+.
T Consensus       420 ~l~~~~~~~~k~~~~~~~iL~~~~~~~~  447 (472)
T KOG1337|consen  420 ILSKLLELLEKLRTLEKRILEKSLKLLR  447 (472)
T ss_pred             ccchhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            5678899999999999999999988776

>KOG1338 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query438
1mlv_A444 Structure And Catalytic Mechanism Of A Set Domain P 8e-08
2h21_A440 Structure Of Rubisco Lsmt Bound To Adomet Length = 8e-08
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein Methyltransferase Length = 444 Back     alignment and structure 
Iteration: 1

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 145/361 (40%), Gaps = 58/361 (16%)
Query: 118 LRLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKR 177
           L +   L+    ++D+ W+ Y   LP   E  S +  +EE+L ELQ   L  T    ++ 
Sbjct: 82  LSVILFLIRERSREDSVWKHYFGILPQ--ETDSTIYWSEEELQELQGSQLLKTTVSVKEY 139
Query: 178 AREFWEKNWHSGVPLKIKRLAHDP---ERFIWAVSIAQSRCINMQVRIGALVQDANMLIP 234
            +    K     + L  KRL  DP   + F WA  I +SR  + ++R   LV     ++P
Sbjct: 140 VKNECLK-LEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFS-RLRNENLV-----VVP 192
Query: 235 YADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQ-------------HVRRGEEMTVNYMHG 281
            AD++NHS           +D   EV   AG               V+ GE++ + Y   
Sbjct: 193 MADLINHSAGVTT------EDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLN 246
Query: 282 QMNDMLMQRYGFSSP---VNPWNVIQFSGDARIHLDSFLSVFNISGLPEEYY----HNSK 334
           + N  L   YGF  P    + + +     ++    D  L V   +G  +  Y    +N  
Sbjct: 247 KSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRT 306
Query: 335 ISSDEESFI--------DGAVIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLAE 386
           +      ++        D  ++ +      W   ++ +    E    K ++E C+  LA 
Sbjct: 307 LPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAG 366
Query: 387 FPTTSKQDQKMLDSMKEPRRTLEAAIKYRLHRKLFIDKV----------IKALDIYQDRI 436
           + TT +QD+++ +   + R  L  A+  R   K+ + ++          +  L+ YQ+R 
Sbjct: 367 YHTTIEQDRELKEGNLDSR--LAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERR 424
Query: 437 L 437
           L
Sbjct: 425 L 425
>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet Length = 440 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query438
2h21_A440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 6e-48
3smt_A497 Histone-lysine N-methyltransferase SETD3; histone 2e-42
3qxy_A449 N-lysine methyltransferase SETD6; epigenetics, pro 1e-32
3qww_A433 SET and MYND domain-containing protein 2; methyltr 5e-07
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 2e-05
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 2e-04
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 3e-04
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 5e-04
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440 Back     alignment and structure
 Score =  169 bits (428), Expect = 6e-48
 Identities = 76/407 (18%), Positives = 145/407 (35%), Gaps = 68/407 (16%)

Query: 89  VEFKEGPDGFGVFASKDIEP------------------------RRRARTDWDLRLACLL 124
           V+     +G G+ A KDI                          R  +     L +   L
Sbjct: 25  VKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFL 84

Query: 125 LYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEK 184
           +    ++D+ W+ Y   LP   E  S +  +EE+L ELQ   L  T    ++  +    K
Sbjct: 85  IRERSREDSVWKHYFGILP--QETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLK 142

Query: 185 NWHSGV--PLKIKRLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHS 242
                +    ++       + F WA  I +SR  +          +  +++P AD++NHS
Sbjct: 143 LEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLR------NENLVVVPMADLINHS 196

Query: 243 FQPNCFFH-------WRFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFSS 295
                  H                  + +   V+ GE++ + Y   + N  L   YGF  
Sbjct: 197 AGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIE 256

Query: 296 PVNPWNVIQFS---GDARIHLDSFLSVFNISGLPEEYYH----NSKISSDEESFI----- 343
           P    +    +    ++    D  L V   +G  +  Y     N  +      ++     
Sbjct: 257 PNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVAL 316

Query: 344 ---DGAVIAAARTLPTWSDGDVPLVPSIERKAVKELQEECRQMLAEFPTTSKQDQKMLDS 400
              D  ++ +      W   ++ +    E    K ++E C+  LA + TT +QD+++ + 
Sbjct: 317 GGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEG 376

Query: 401 MKEPRRTLEAAIKYRLHRKLFIDKV----------IKALDIYQDRIL 437
             + R  +  A+  R   K+ + ++          +  L+ YQ+R L
Sbjct: 377 NLDSRLAI--AVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRL 421
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497 Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query438
3smt_A497 Histone-lysine N-methyltransferase SETD3; histone 100.0
2h21_A440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 100.0
3qxy_A449 N-lysine methyltransferase SETD6; epigenetics, pro 100.0
3qww_A433 SET and MYND domain-containing protein 2; methyltr 99.45
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 99.39
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 99.25
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 98.33
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 98.04
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 97.65
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 97.6
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 97.54
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 97.54
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 97.5
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 97.49
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 97.42
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 97.21
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 96.97
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 96.89
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 96.82
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 96.73
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 96.58
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 96.57
3db5_A151 PR domain zinc finger protein 4; methyltransferase 92.78
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 92.15
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 89.78
3dal_A196 PR domain zinc finger protein 1; methyltransferase 89.71
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 88.75
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 86.21
3ray_A237 PR domain-containing protein 11; structural genomi 83.21
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=6.7e-58  Score=478.88  Aligned_cols=349  Identities=23%  Similarity=0.292  Sum_probs=280.5

Q ss_pred             CCchhhHHhHhhhcC--CCceeeeecCC-ceEEEEecCCCCCC----CCC----------CC---------------ccH
Q 013703           71 ADPDFYKIGYVRSMR--AYGVEFKEGPD-GFGVFASKDIEPRR----RAR----------TD---------------WDL  118 (438)
Q Consensus        71 ~~~~~~~~~W~~~~g--~~~v~i~~~~~-GrGl~A~~di~~ge----vP~----------~~---------------w~~  118 (438)
                      ...+|.  +|++.+|  ..+|+++..++ |+||+|+++|++|+    ||+          ..               +..
T Consensus        77 ~~~~ll--~W~~~~G~~~~~v~i~~~~~~GrGl~A~~dI~~ge~ll~IP~~lllt~~~a~~s~l~~~~~~~~~l~~~~~~  154 (497)
T 3smt_A           77 YFPDLM--KWASENGASVEGFEMVNFKEEGFGLRATRDIKAEELFLWVPRKLLMTVESAKNSVLGPLYSQDRILQAMGNI  154 (497)
T ss_dssp             GHHHHH--HHHHHTTCCCTTEEEEEETTTEEEEEESSCBCTTCEEEEEEGGGCEEHHHHHTSTTHHHHHHCHHHHHCHHH
T ss_pred             HHHHHH--HHHHHCCCCccceEEEEcCCCccEEEEcccCCCCCEEEEcCHHHhCcHHhhhhhhcccccccccccccccHH
Confidence            356788  9999999  46899998776 99999999999998    577          00               113


Q ss_pred             HHHHHHHHHhCCCCCchHHHhhhCCCCCCCCccccCCHHHHhccCCCcHHHHHHHHHHHHHHHHHHHhhcC--CCcc--c
Q 013703          119 RLACLLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWHSG--VPLK--I  194 (438)
Q Consensus       119 ~LAl~Ll~e~~g~~S~w~pYl~~LP~~~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~i~~~~~~~~~~~--~p~~--~  194 (438)
                      .|+++|++|+.+++|+|+||+++||+.  +++|++|+++|++.|+||++...+.++.+.+...|...+...  .|..  +
T Consensus       155 ~Lal~Ll~E~~~~~S~w~pYl~~LP~~--~~~pl~w~~eel~~L~gt~l~~~v~~~~~~~~~~~~~~~~~~~~~p~~~~~  232 (497)
T 3smt_A          155 ALAFHLLCERASPNSFWQPYIQTLPSE--YDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKL  232 (497)
T ss_dssp             HHHHHHHHHHTCTTCTTHHHHTTSCSC--CCSGGGCCHHHHHTTSSSSHHHHHHHHHHHHHHHHHHHHHHC----CCCCS
T ss_pred             HHHHHHHHHhcCCCCchHHHHHhCCCC--CCCCCcCCHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHhCcccccC
Confidence            589999999988999999999999998  579999999999999999999988887777766666543211  2211  1


Q ss_pred             c-ccCCCHHHHHHHHHHhhhceeeecccccccccccceecchhcccCCCCCCCceeEEEeeCCeeEEEEEeccCCCCCce
Q 013703          195 K-RLAHDPERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFKDRMLEVMVNAGQHVRRGEE  273 (438)
Q Consensus       195 ~-~~~~t~e~f~WA~~~V~SRaf~~~~~~~~~~~~~~~LvP~~Dm~NH~~~~n~~~~~~~~~~~~~~~l~a~r~i~~GeE  273 (438)
                      + ...+|++.|.||+++|+||+|.++..+|.  ....+|||++||+||++.++ .+.|+.+++.  +.+++.++|++|||
T Consensus       233 ~~~~~~t~e~f~wA~~~v~SRa~~~~~~~g~--~~~~~LvP~~Dm~NH~~~~~-~~~~~~~~~~--~~~~a~~~i~~Gee  307 (497)
T 3smt_A          233 PLKDSFTYEDYRWAVSSVMTRQNQIPTEDGS--RVTLALIPLWDMCNHTNGLI-TTGYNLEDDR--CECVALQDFRAGEQ  307 (497)
T ss_dssp             TTTTCCCHHHHHHHHHHHHHHCEEEECTTSS--SEEEEECTTGGGCEECSCSE-EEEEETTTTE--EEEEESSCBCTTCE
T ss_pred             ccccccCHHHHHHhhheEecccccccCcccc--cccceeechHHhhcCCCccc-ceeeeccCCe--EEEEeCCccCCCCE
Confidence            1 23589999999999999999998765432  23679999999999999863 5677766665  77899999999999


Q ss_pred             EEEccCCCCCcHHHHHhCCccCCCCCCCeEEeccccccccchh----hhhhhhcCCCcccccceeecCCCCccccHHHHH
Q 013703          274 MTVNYMHGQMNDMLMQRYGFSSPVNPWNVIQFSGDARIHLDSF----LSVFNISGLPEEYYHNSKISSDEESFIDGAVIA  349 (438)
Q Consensus       274 v~isYG~~~~N~~LL~~YGFv~~~Np~D~v~l~~~~~~~~d~~----l~~l~~~gl~~~~~~~~~l~~~~~~~ld~~Ll~  349 (438)
                      |||+||++ +|++||++|||++++||+|.|.|++++.. .|++    .+.++..|++...  .|.+..++ ..+|.+|++
T Consensus       308 i~isYG~~-~n~~Ll~~YGFv~~~Np~D~v~l~l~~~~-~d~l~~~K~~~L~~~gl~~~~--~f~l~~~~-~~~~~~Ll~  382 (497)
T 3smt_A          308 IYIFYGTR-SNAEFVIHSGFFFDNNSHDRVKIKLGVSK-SDRLYAMKAEVLARAGIPTSS--VFALHFTE-PPISAQLLA  382 (497)
T ss_dssp             EEECCCSC-CHHHHHHHHSCCCTTCTTCEEEEEEECCT-TSTTHHHHHHHHHHTTCCSEE--EEEEESSS-SCSCHHHHH
T ss_pred             EEEeCCCC-ChHHHHHHCCCCCCCCCCceEEEEecCCC-cchhHHHHHHHHHHcCCCccc--eeeeecCC-CCCCHHHHH
Confidence            99999999 59999999999999999999999887652 3443    2346667776542  24444433 346889999


Q ss_pred             HHHhcc--------------------CCCCCCCCCCchHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHhcCCCchHHHH
Q 013703          350 AARTLP--------------------TWSDGDVPLVPSIERKAVKELQEECRQMLAEFPTTSKQDQKMLDSMKEPRRTLE  409 (438)
Q Consensus       350 alR~l~--------------------~~~~~~~~~~~~~E~~~~~~L~~~~~~~L~~y~TtleeD~~~L~~~~~~s~r~~  409 (438)
                      ++|++.                    .|.+.+.|++.+||.++++.|.+.|..+|+.|+||+++|+++|++ ..++.|.+
T Consensus       383 ~LRvl~~~~~el~~~~~~~~~~~~~~~l~~~~~piS~~nE~~v~~~L~~~~~~~L~~Y~TtieeDe~lL~~-~~ls~r~r  461 (497)
T 3smt_A          383 FLRVFCMTEEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKN-HDLSVRAK  461 (497)
T ss_dssp             HHHHHTCCHHHHHHHHHTCSSSCTTTTTTCTTSCSCHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHTTC-TTSCHHHH
T ss_pred             HHHHHhCCHHHHHHHhcccchhhhhhhcccccCCCChhhHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHhc-CCCCHHHH
Confidence            999972                    122334578889999999999999999999999999999999986 35789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013703          410 AAIKYRLHRKLFIDKVIKALDIYQD  434 (438)
Q Consensus       410 ~A~~~R~~eK~IL~~~l~~L~~~~~  434 (438)
                      +|+++|++||+||+.+++.++..++
T Consensus       462 ~Av~vR~gEK~IL~~~l~~~~~~~~  486 (497)
T 3smt_A          462 MAIKLRLGEKEILEKAVKSAAVNRE  486 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987766554
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 438
d2h2ja2261 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain 2e-21
d2h2ja1176 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, sub 2e-11
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 1e-04
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 3e-04
d1ml9a_284 b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T 0.001
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 0.002
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 91.2 bits (225), Expect = 2e-21
 Identities = 55/244 (22%), Positives = 87/244 (35%), Gaps = 43/244 (17%)

Query: 89  VEFKEGPDGFGVFASKDIEP------------------------RRRARTDWDLRLACLL 124
           V+     +G G+ A KDI                          R  +     L +   L
Sbjct: 24  VKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFL 83

Query: 125 LYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEK 184
           +    ++D+ W+ Y   LP   E  S +  +EE+L ELQ   L  T    ++  +    K
Sbjct: 84  IRERSREDSVWKHYFGILP--QETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLK 141

Query: 185 NWHSGVPLKIKRLAHDP---ERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNH 241
                + L  KRL  DP   + F WA  I +SR  +             +++P AD++NH
Sbjct: 142 -LEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENL------VVVPMADLINH 194

Query: 242 SFQPNCFFHW-------RFKDRMLEVMVNAGQHVRRGEEMTVNYMHGQMNDMLMQRYGFS 294
           S       H                  + +   V+ GE++ + Y   + N  L   YGF 
Sbjct: 195 SAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFI 254

Query: 295 SPVN 298
            P  
Sbjct: 255 EPNE 258
>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 176 Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query438
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 100.0
d2h2ja1176 RuBisCo LSMT C-terminal, substrate-binding domain 99.68
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 98.17
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 97.7
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 97.1
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 97.08
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 92.05
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=7.8e-38  Score=298.18  Aligned_cols=218  Identities=23%  Similarity=0.320  Sum_probs=173.7

Q ss_pred             CchhhHHhHhhhcC--CCceeeee-cCC-ceEEEEecCCCCCC----CCC---------------------CCccHHHHH
Q 013703           72 DPDFYKIGYVRSMR--AYGVEFKE-GPD-GFGVFASKDIEPRR----RAR---------------------TDWDLRLAC  122 (438)
Q Consensus        72 ~~~~~~~~W~~~~g--~~~v~i~~-~~~-GrGl~A~~di~~ge----vP~---------------------~~w~~~LAl  122 (438)
                      ...|.  +|++++|  +.+|.+.. ..+ ||||||++||++||    ||.                     .+| ..|++
T Consensus         5 ~~~~~--~W~~~~g~~~~~~~~~~~~~~~GrGl~AtrdI~~Ge~il~vP~~~~lt~~~~~~~~~~~~~~~~~~~-~~l~~   81 (261)
T d2h2ja2           5 VQTFW--KWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPW-LSVIL   81 (261)
T ss_dssp             HHHHH--HHHHTTTSSCSSCCCEEEEETTEEEEECSSCCCTTCEEEEEEGGGCCSHHHHHTSGGGTTTTTSCHH-HHHHH
T ss_pred             HHHHH--HHHHHCCCccCCceEeecCCCceeEEEECCcCCCCCEEEEeChHHhccHHHhhhhHHHHHHhhcCcH-HHHHH
Confidence            34688  9999999  45677655 234 99999999999999    366                     112 47889


Q ss_pred             HHHHHhCCCCCchHHHhhhCCCCCCCCccccCCHHHHhccCCCcHHHHHHHHHHHHHHHHHHHhhcCCCc--cccccCCC
Q 013703          123 LLLYAFDQDDNFWQLYGDFLPNADECTSLLLATEEDLMELQDPNLASTMREQQKRAREFWEKNWHSGVPL--KIKRLAHD  200 (438)
Q Consensus       123 ~Ll~e~~g~~S~w~pYl~~LP~~~~~~~pl~w~~~el~~L~gt~l~~~~~~~~~~i~~~~~~~~~~~~p~--~~~~~~~t  200 (438)
                      +|++|+.+..|.|++|+++||+.  ..+|++|+.+++..|+++.+...+....+.+.+.|.+........  ......++
T Consensus        82 ~l~~e~~~~~s~~~~y~~~lp~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (261)
T d2h2ja2          82 FLIRERSREDSVWKHYFGILPQE--TDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVT  159 (261)
T ss_dssp             HHHHHHHCTTCTTHHHHTTSCSC--CSCGGGCCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTCCSCCC
T ss_pred             HHHHHHhCCCCchhhhhhccccc--cCCcccCCHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccC
Confidence            99999999999999999999998  568999999999999999999999988888888887765432111  11124579


Q ss_pred             HHHHHHHHHHhhhceeeecccccccccccceecchhcccCCCCCCCceeEEEee-------CCeeEEEEEeccCCCCCce
Q 013703          201 PERFIWAVSIAQSRCINMQVRIGALVQDANMLIPYADMLNHSFQPNCFFHWRFK-------DRMLEVMVNAGQHVRRGEE  273 (438)
Q Consensus       201 ~e~f~WA~~~V~SRaf~~~~~~~~~~~~~~~LvP~~Dm~NH~~~~n~~~~~~~~-------~~~~~~~l~a~r~i~~GeE  273 (438)
                      ++.|.||+++|.||+|....      ....+|+|++||+||++.+|+...+...       .+...++|+|.|+|++|||
T Consensus       160 ~~~~~~a~~~v~sr~~~~~~------~~~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~GEE  233 (261)
T d2h2ja2         160 LDDFFWAFGILRSRAFSRLR------NENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQ  233 (261)
T ss_dssp             HHHHHHHHHHHHHHSBCCC---------CCBCCTTGGGCEECSSCCSCCCCCC-----------CEEEEECSSCCCTTSB
T ss_pred             HHHHHHHHHHhhcccccccc------cccccchhhhHHhhcCCCCCcccccccccCcccccCCCcEEEEEECCCCCCCCE
Confidence            99999999999999998864      3578999999999999999975443221       1123488999999999999


Q ss_pred             EEEccCCCCCcHHHHHhCCccCCC-CCC
Q 013703          274 MTVNYMHGQMNDMLMQRYGFSSPV-NPW  300 (438)
Q Consensus       274 v~isYG~~~~N~~LL~~YGFv~~~-Np~  300 (438)
                      |||+||+..+|++||.+||||+++ |||
T Consensus       234 I~isYG~~~~n~~ll~~yGFv~~~~n~~  261 (261)
T d2h2ja2         234 VYIQYDLNKSNAELALDYGFIEPNENRH  261 (261)
T ss_dssp             CEECSCSSCCHHHHHHHSSCCCSCGGGC
T ss_pred             EEEecCCCCCHHHHHHhCCCCCCCCCCC
Confidence            999999643699999999999875 886
>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure