Citrus Sinensis ID: 013707

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
Protein Sequence
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSFYVFSRWH
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcHHcccccccHHccccccccccccccccccccHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMmalcpgldecSLAIYLSGFQQAIIGLGTLVMMpvignlsdqygrkamltlpltlsiIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLkddvpndddddltrpiiteetegvnqnesnspvkipvckkipsIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIswsawvpyATTAFSVLVVFAtpsfrsivskqvgpneqgkaqgcISGISSFanivsplifspltalflskgapfnfpgfsIMCIGLASVRAFTYELLLSFYVFSRWH
Flexible Loop (DISEMBL)
mgmekeikTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIiteetegvnqnesnspvkipvckKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSFYVFSRWH
Low Complexity Region (SEG)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMltlpltlsiiplailaYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKddvpndddddLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSFYVFSRWH
Disordered region (IsUnstruct)
*******KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDV****************************VKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVG****GKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSFYVFSRW*
Disordered Region (DISOPRED)
******I****HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD************************KIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQV**NEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLL**Y******
Disordered Region (DISEMBL)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETE*********PVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSFYVFSRWH
Disordered Region (DISPRO)
***EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD*********EETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSFYVFSRW*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSFYVFSRWH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	438	2.2.26 [Sep-21-2011]
P70187	490	Hippocampus abundant tran	yes	no	0.773	0.691	0.235	3e-17
Q96MC6	490	Hippocampus abundant tran	yes	no	0.773	0.691	0.235	3e-17
Q5SR56	506	Hippocampus abundant tran	no	no	0.723	0.626	0.241	7e-16
Q8CIA9	507	Hippocampus abundant tran	no	no	0.721	0.623	0.231	2e-15
A4IF94	502	Hippocampus abundant tran	no	no	0.723	0.631	0.244	2e-15
B2RYH9	507	Hippocampus abundant tran	no	no	0.739	0.639	0.233	5e-14
P02982	399	Tetracycline resistance p	yes	no	0.671	0.736	0.224	1e-13
Q07282	405	Tetracycline resistance p	yes	no	0.678	0.733	0.219	7e-11
P02981	396	Tetracycline resistance p	yes	no	0.680	0.752	0.210	2e-10
P51563	393	Tetracycline resistance p	yes	no	0.687	0.765	0.230	1e-09

>sp|P70187|HIAT1_MOUSE Hippocampus abundant transcript 1 protein OS=Mus musculus GN=Hiat1 PE=2 SV=3

 Score = 90.1 bits (222), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 163/386 (42%), Gaps = 47/386 (12%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           +F+  F WG  T     A T V +    P          ++G  Q + GL + +  P+IG
Sbjct: 44  IFLEFFAWGLLT-----APTLVVLHETFP-----KHTFLMNGLIQGVKGLLSFLSAPLIG 93

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD +GRK+ L L +  +  P+ ++  + S  +++A  ++  + A+        +  AY
Sbjct: 94  ALSDVWGRKSFLLLTVFFTCAPIPLM--KISPWWYFAVISVSGVFAVTFS-----VVFAY 146

Query: 133 VADNISERQRASAFGILLGVLSASFVC----GTLAARFLSTTSAFQAATIVSMLAAAYMR 188
           VAD   E +R+ A+G++    +AS V     G    R    +     AT +++L   ++ 
Sbjct: 147 VADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFIL 206

Query: 189 VFLKDDVPND-DDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI--PSIRDLICLLRSS 245
           V + + +P          PI  E+ +                KK+   SI  LIC     
Sbjct: 207 VAVPESLPEKMRPASWGAPISWEQAD-----------PFASLKKVGQDSIVLLIC----- 250

Query: 246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPL 305
                  +  F S L E G  +SF  +L+    F+    A  + + G+   I+Q + + L
Sbjct: 251 -------ITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSL 303

Query: 306 LAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVG 365
           L   +G    + LGL    + +         W+ +A  A + +     P+  ++VS+   
Sbjct: 304 LMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSALVSRTAD 363

Query: 366 PNEQGKAQGCISGISSFANIVSPLIF 391
            ++QG  QG I+GI    N + P ++
Sbjct: 364 ADQQGVVQGMITGIRGLCNGLGPALY 389

Mus musculus (taxid: 10090)

>sp|Q96MC6|HIAT1_HUMAN Hippocampus abundant transcript 1 protein OS=Homo sapiens GN=HIAT1 PE=2 SV=2

 Score = 90.1 bits (222), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 163/386 (42%), Gaps = 47/386 (12%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           +F+  F WG  T     A T V +    P          ++G  Q + GL + +  P+IG
Sbjct: 44  IFLEFFAWGLLT-----APTLVVLHETFP-----KHTFLMNGLIQGVKGLLSFLSAPLIG 93

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD +GRK+ L L +  +  P+ ++  + S  +++A  ++  + A+        +  AY
Sbjct: 94  ALSDVWGRKSFLLLTVFFTCAPIPLM--KISPWWYFAVISVSGVFAVTFS-----VVFAY 146

Query: 133 VADNISERQRASAFGILLGVLSASFVC----GTLAARFLSTTSAFQAATIVSMLAAAYMR 188
           VAD   E +R+ A+G++    +AS V     G    R    +     AT +++L   ++ 
Sbjct: 147 VADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFIL 206

Query: 189 VFLKDDVPND-DDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI--PSIRDLICLLRSS 245
           V + + +P          PI  E+ +                KK+   SI  LIC     
Sbjct: 207 VAVPESLPEKMRPASWGAPISWEQAD-----------PFASLKKVGQDSIVLLIC----- 250

Query: 246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPL 305
                  +  F S L E G  +SF  +L+    F+    A  + + G+   I+Q + + L
Sbjct: 251 -------ITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSL 303

Query: 306 LAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVG 365
           L   +G    + LGL    + +         W+ +A  A + +     P+  ++VS+   
Sbjct: 304 LMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVSALVSRTAD 363

Query: 366 PNEQGKAQGCISGISSFANIVSPLIF 391
            ++QG  QG I+GI    N + P ++
Sbjct: 364 ADQQGVVQGMITGIRGLCNGLGPALY 389

Homo sapiens (taxid: 9606)

>sp|Q5SR56|HIAL1_HUMAN Hippocampus abundant transcript-like protein 1 OS=Homo sapiens GN=HIATL1 PE=2 SV=3

 Score = 85.5 bits (210), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 150/340 (44%), Gaps = 23/340 (6%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++  R S  +++A  
Sbjct: 81  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLM--RISPWWYFAMI 138

Query: 112 ALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTS 171
           ++  + ++        +  AYVAD   E +R++A+G +    +AS V       +LS + 
Sbjct: 139 SVSGVFSVTF-----SVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSASY 193

Query: 172 AFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKK 231
                 +V+ + A     F+   VP    + + RP+         Q +  + +K  V K 
Sbjct: 194 GDSLVVLVATVVALLDICFILVAVPESLPEKM-RPVSWGAQISWKQADPFASLK-KVGKD 251

Query: 232 IPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIA 291
             S   LIC            +  F S L E G  +SF  +L+    F   + A  + + 
Sbjct: 252 --STVLLIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIAAFIAMV 297

Query: 292 GLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVF 351
           G+   ++Q  F+ +L   LG    + LGL    + +        AW+ +A    + +   
Sbjct: 298 GILSIVAQTAFLSILMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSSI 357

Query: 352 ATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIF 391
             P+  ++VS+    ++QG AQG I+GI    N + P ++
Sbjct: 358 TFPAISALVSRNAESDQQGVAQGIITGIRGLCNGLGPALY 397

Homo sapiens (taxid: 9606)

>sp|Q8CIA9|HIAL1_MOUSE Hippocampus abundant transcript-like protein 1 OS=Mus musculus GN=Hiatl1 PE=2 SV=3

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 146/341 (42%), Gaps = 25/341 (7%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++         + Y+
Sbjct: 83  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMRINP-----WWYF 137

Query: 112 ALRTLTAMVCEGSIN-CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTT 170
            + +++ +    S+   +  AYVAD   E +R++A+G +    +AS V       +LS  
Sbjct: 138 GMISVSGVF---SVTFSVIFAYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSAN 194

Query: 171 SAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCK 230
                  +V+ L A     F+   VP    + + RP          Q +  + +K  V K
Sbjct: 195 YGDSLVVLVATLVALLDICFILIAVPESLSEKI-RPASWGAQISWKQADPFASLK-KVGK 252

Query: 231 KIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLI 290
              S   LIC            +  F S L E G  +SF  +L+    F   +    + +
Sbjct: 253 D--STVLLIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIVAFIAM 298

Query: 291 AGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVV 350
            G+   ++Q +F+  L   LG    + LGL    + +        AW+ +A    + +  
Sbjct: 299 VGILSIVAQTVFLSKLMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSS 358

Query: 351 FATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIF 391
              P+  +++S+    ++QG AQG ++GI    N + P ++
Sbjct: 359 ITFPAVSALISRNAESDQQGVAQGIVTGIRGLCNGLGPALY 399

Mus musculus (taxid: 10090)

>sp|A4IF94|HIAL1_BOVIN Hippocampus abundant transcript-like protein 1 OS=Bos taurus GN=HIATL1 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 149/340 (43%), Gaps = 23/340 (6%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++  R S  +++A  
Sbjct: 78  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLM--RISPWWYFAMI 135

Query: 112 ALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTS 171
           ++  + ++        +  AYVAD   E +R++A+G +    +AS V       +LS + 
Sbjct: 136 SISGVFSVTFS-----VIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSASY 190

Query: 172 AFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKK 231
                 +V+ + A     F+   VP    + + RP+         Q +  + +K  V K 
Sbjct: 191 GDSLVVLVATVVALLDICFILLAVPESLPEKM-RPLSWGARISWKQADPFASLK-KVGKD 248

Query: 232 IPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIA 291
             S   LIC            +  F S L E G  +SF  +L+    F   + A  + + 
Sbjct: 249 --STILLIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSIKIAAFIAMV 294

Query: 292 GLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVF 351
           G+   ++Q +F+  L   LG    + LGL      +        AW+ +A    + +   
Sbjct: 295 GILSIVAQTVFLTSLMRSLGNKNTVLLGLGFQMFQLAWYGFGSQAWMMWAAGIVAAVSSI 354

Query: 352 ATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIF 391
             P+  ++VS+    N+QG AQG I+GI    N + P ++
Sbjct: 355 TFPAVSTLVSQNADSNQQGVAQGIITGIRGLCNGLGPALY 394

Bos taurus (taxid: 9913)

>sp|B2RYH9|HIAL1_RAT Hippocampus abundant transcript-like protein 1 OS=Rattus norvegicus GN=Hiatl1 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 23/347 (6%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++  R S  +++   
Sbjct: 83  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLM--RISPWWYFGMI 140

Query: 112 ALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTS 171
           ++  + ++        +  AYVAD   E +R++A+G +    +AS V       +LS+  
Sbjct: 141 SVSGVFSVTF-----SVIFAYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSSNY 195

Query: 172 AFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKK 231
                 +V+ + A     F+   VP    + + RP          Q +  + +K  V K 
Sbjct: 196 GDSLVVLVATVVALLDICFILVAVPESLPEKI-RPASWGAQISWKQADPFASLK-KVGKD 253

Query: 232 IPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIA 291
             S   LIC            +  F S L E G  +SF  +L+    F   +    + + 
Sbjct: 254 --STVLLIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIVAFIAMV 299

Query: 292 GLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVF 351
           G+   ++Q +F+  L   LG    + LGL    + +        AW+ +A    + +   
Sbjct: 300 GILSILAQTVFLSKLMRSLGNKNTVLLGLGFQILQLAWYGFGAQAWMMWAAGTVAAMSSI 359

Query: 352 ATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF 398
             P+  +++S+    ++QG AQG I+GI    N + P ++  +  LF
Sbjct: 360 TFPAVSALISRNAESDQQGVAQGIITGIRGLCNGLGPALYGFIFYLF 406

Rattus norvegicus (taxid: 10116)

>sp|P02982|TCR1_ECOLX Tetracycline resistance protein, class A OS=Escherichia coli GN=tetA PE=3 SV=2

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 146/334 (43%), Gaps = 40/334 (11%)

Query: 69  PVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCL 128
           PV+G LSD++GR+ +L + L  + +  AI+A   +  F +  Y  R +  +   G+   +
Sbjct: 61  PVLGALSDRFGRRPVLLVSLAGAAVDYAIMA---TAPFLWVLYIGRIVAGIT--GATGAV 115

Query: 129 ALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMR 188
           A AY+AD     +RA  FG +        V G +    +   S        + L      
Sbjct: 116 AGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAAL------ 169

Query: 189 VFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTL 248
                    +  + LT   +  E+          P++      + S R         +T+
Sbjct: 170 ---------NGLNFLTGCFLLPES----HKGERRPLRREALNPLASFR-----WARGMTV 211

Query: 249 SQAAVVAFFSGLSEGGMQAS-FLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLA 307
             A +  FF     G + A+ ++ F + +FH++       +   G+  +++Q +    +A
Sbjct: 212 VAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVA 271

Query: 308 PILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFAT-----PSFRSIVSK 362
             LGE + L LG+ A      + + +   W+     AF ++V+ A+     P+ ++++S+
Sbjct: 272 ARLGERRALMLGMIADGTGYILLAFATRGWM-----AFPIMVLLASGGIGMPALQAMLSR 326

Query: 363 QVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA 396
           QV    QG+ QG ++ ++S  +IV PL+F+ + A
Sbjct: 327 QVDEERQGQLQGSLAALTSLTSIVGPLLFTAIYA 360

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

>sp|Q07282|TCR5_ECOLX Tetracycline resistance protein, class E OS=Escherichia coli GN=tetA PE=3 SV=1

 Score = 68.9 bits (167), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 148/332 (44%), Gaps = 35/332 (10%)

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           ++  P++G  SD+ GR+ +L L L  + +  A++A   + S  +  Y  R +  +   G+
Sbjct: 55  VIFAPLLGRWSDRIGRRPVLLLSLLGATLDYALMA---TASVVWVLYLGRLIAGI--TGA 109

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---LSTTSAFQAATIVSM 181
              +A + +AD   E  R   FG++        + G +   F   LS  + F  A  ++ 
Sbjct: 110 TGAVAASTIADVTPEESRTHWFGMMGACFGGGMIAGPVIGGFAGQLSVQAPFMFAAAING 169

Query: 182 LAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL 241
           LA   + +F+  +  N +        +++E +    NE+ S           SIR++I  
Sbjct: 170 LAF-LVSLFILHETHNANQ-------VSDELKNETINETTS-----------SIREMISP 210

Query: 242 LRSSVTLSQAAVVAFFSGLSEGGMQAS-FLYFLKAQFHFNKNQFADLMLIAGLAGTISQL 300
           L          +V FF     G + A+ ++ F + +F ++       + + GL   + Q 
Sbjct: 211 L-------SGLLVVFFIIQLIGQIPATLWVLFGEERFAWDGVMVGVSLAVFGLTHALFQG 263

Query: 301 LFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIV 360
           L    +A  LGE K +++G+ A    +F+ ++   +W+ +             P+ + I+
Sbjct: 264 LAAGFIAKHLGERKAIAVGILADGCGLFLLAVITQSWMVWPVLLLLACGGITLPALQGII 323

Query: 361 SKQVGPNEQGKAQGCISGISSFANIVSPLIFS 392
           S +VG   QG+ QG ++ ++    ++ PL+F+
Sbjct: 324 SVRVGQVAQGQLQGVLTSLTHLTAVIGPLVFA 355

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

>sp|P02981|TCR3_ECOLX Tetracycline resistance protein, class C OS=Escherichia coli GN=tetA PE=1 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 148/347 (42%), Gaps = 49/347 (14%)

Query: 69  PVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCL 128
           PV+G LSD++GR+ +L   L  + I  AI+A   +    +  YA R +  +   G+   +
Sbjct: 61  PVLGALSDRFGRRPVLLASLLGATIDYAIMA---TTPVLWILYAGRIVAGI--TGATGAV 115

Query: 129 ALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTS---AFQAATIVSMLAAA 185
           A AY+AD      RA  FG++        V G +A   L   S    F AA +++ L   
Sbjct: 116 AGAYIADITDGEDRARHFGLMSACFGVGMVAGPVAGGLLGAISLHAPFLAAAVLNGLNLL 175

Query: 186 YMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS 245
                +++                      +      P+ +     + S R         
Sbjct: 176 LGCFLMQE----------------------SHKGERRPMPLRAFNPVSSFR-----WARG 208

Query: 246 VTLSQAAVVAFFSGLSEGGMQAS-FLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMP 304
           +T+  A +  FF     G + A+ ++ F + +F ++       + + G+   ++Q     
Sbjct: 209 MTIVAALMTVFFIMQLVGQVPAALWVIFGEDRFRWSATMIGLSLAVFGILHALAQAFVTG 268

Query: 305 LLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFAT-----PSFRSI 359
                 GE + +  G+ A  +   + + +   W+     AF ++++ A+     P+ +++
Sbjct: 269 PATKRFGEKQAIIAGMAADALGYVLLAFATRGWM-----AFPIMILLASGGIGMPALQAM 323

Query: 360 VSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFN 406
           +S+QV  + QG+ QG ++ ++S  +I  PLI   +TA++ +  + +N
Sbjct: 324 LSRQVDDDHQGQLQGSLAALTSLTSITGPLI---VTAIYAASASTWN 367

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

>sp|P51563|TCR7_VIBAN Tetracycline resistance protein, class G OS=Vibrio anguillarum GN=tetA PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 144/352 (40%), Gaps = 51/352 (14%)

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           +V  P++G LSD YGR+ +L   L  + +   I+A   S    +  Y  R ++ +   G+
Sbjct: 55  VVFAPMLGQLSDSYGRRPVLLASLAGAAVDYTIMA---SAPVLWVLYIGRLVSGV--TGA 109

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSA---FQAATIVSM 181
              +A + +AD+  E  RA  FG +     A  + G      L   SA   F AA +++ 
Sbjct: 110 TGAVAASTIADSTGEGSRARWFGYMGACYGAGMIAGPALGGMLGGISAHAPFIAAALLNG 169

Query: 182 LAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL 241
            A     +FLK+               T  + G     +  PV+I         +  + L
Sbjct: 170 FAFLLACIFLKE---------------THHSHG----GTGKPVRI---------KPFVLL 201

Query: 242 LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGT--ISQ 299
                     A+ A F  +   G   + L+ +  +  F  N     + +A    T  I Q
Sbjct: 202 RLDDALRGLGALFAVFFIIQLIGQVPAALWVIYGEDRFQWNTATVGLSLAAFGATHAIFQ 261

Query: 300 LLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFAT-----P 354
                 L+  LGE + L  G+ A      + + +   W+      F +L++ A      P
Sbjct: 262 AFVTGPLSSRLGERRTLLFGMAADGTGFVLLAFATQGWM-----VFPILLLLAAGGVGMP 316

Query: 355 SFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFN 406
           + ++++S  V  N+QG  QG ++ +++ ++I  PL F   TAL+ +    +N
Sbjct: 317 ALQAMLSNNVSSNKQGALQGTLTSLTNLSSIAGPLGF---TALYSATAGAWN 365

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Vibrio anguillarum (taxid: 55601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
225428113	439	PREDICTED: hippocampus abundant transcri	0.949	0.947	0.705	1e-163
224105113	442	predicted protein [Populus trichocarpa]	0.968	0.959	0.662	1e-161
224083179	447	predicted protein [Populus trichocarpa]	0.963	0.944	0.634	1e-157
255539072	442	tetracycline transporter, putative [Rici	0.965	0.957	0.646	1e-153
118486381	450	unknown [Populus trichocarpa]	0.965	0.94	0.625	1e-153
225459764	442	PREDICTED: hippocampus abundant transcri	0.961	0.952	0.644	1e-152
356509042	432	PREDICTED: hippocampus abundant transcri	0.965	0.979	0.618	1e-152
356517952	432	PREDICTED: hippocampus abundant transcri	0.965	0.979	0.621	1e-152
357467111	454	Hippocampus abundant transcript-like pro	0.970	0.936	0.575	1e-148
356574133	443	PREDICTED: hippocampus abundant transcri	0.949	0.939	0.623	1e-147

>gi|225428113|ref|XP_002280708.1| PREDICTED: hippocampus abundant transcript 1 protein [Vitis vinifera] gi|297744560|emb|CBI37822.3| unnamed protein product [Vitis vinifera]

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 297/421 (70%), Positives = 340/421 (80%), Gaps = 5/421 (1%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  L+HLFVTV L  F+  +V+PAITDVTM ALCPG DECSLAIYLSGFQQAIIGL
Sbjct: 1   MEK-LAGLTHLFVTVLLGSFSAFIVIPAITDVTMSALCPGKDECSLAIYLSGFQQAIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GT+VM PVIGNLSD+YGRKA+LT+P+ LSIIPLAILAY R+ + FYAY+ +RTLTAMV E
Sbjct: 60  GTVVMTPVIGNLSDEYGRKALLTIPMALSIIPLAILAYSRTTTSFYAYFVIRTLTAMVGE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GSINCLALAYVADNISE QRASAFG+L GV SA+FVCGTLAARFLST S FQ AT+VSM+
Sbjct: 120 GSINCLALAYVADNISEGQRASAFGVLSGVASAAFVCGTLAARFLSTASTFQVATLVSMI 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           A  YMRVFLK+  P  D        + ++  G++ ++ NS  KI   KKIPS+ DLI LL
Sbjct: 180 ATVYMRVFLKETFPKGDSSQ----ALLKKEPGMSPDDGNSSEKIQTFKKIPSVGDLISLL 235

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
           +     SQAAVV FF+GL+EGG+QAS LYFLKA+FHFNKNQFAD+MLI G+ GTISQLLF
Sbjct: 236 KCRAAFSQAAVVVFFNGLAEGGLQASLLYFLKARFHFNKNQFADIMLIVGVMGTISQLLF 295

Query: 303 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSK 362
           MPLLAP + E KLLS+GLF  C N+F+ SI+WS WVPYA  A +   VFA P  RSI SK
Sbjct: 296 MPLLAPRVSEEKLLSIGLFMGCTNIFLNSIAWSFWVPYAIAALAAFAVFANPCVRSIASK 355

Query: 363 QVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRA 422
           QVGPNEQGKAQGCISGISS A I+SPLIFSPLTALFLS+GAPF FPGFSIMCIG AS+ A
Sbjct: 356 QVGPNEQGKAQGCISGISSSAQIISPLIFSPLTALFLSQGAPFYFPGFSIMCIGFASMIA 415

Query: 423 F 423
           F
Sbjct: 416 F 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105113|ref|XP_002313691.1| predicted protein [Populus trichocarpa] gi|222850099|gb|EEE87646.1| predicted protein [Populus trichocarpa]

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 283/427 (66%), Positives = 344/427 (80%), Gaps = 3/427 (0%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK    L HLFVTVFL  F ++MV+PA+TDVTM+A+CPG DECSLAIYL+GFQQA IG+
Sbjct: 1   MEK-FTELIHLFVTVFLSTFGSLMVLPAVTDVTMVAVCPGQDECSLAIYLTGFQQASIGM 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GT+VM+P+IGNLSDQYGRKA+LTLP+TLSIIPL ILAY R+  FFYAYYALRTLTAM+CE
Sbjct: 60  GTVVMLPLIGNLSDQYGRKALLTLPMTLSIIPLVILAYSRTTGFFYAYYALRTLTAMICE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GSI+CLALAYVADN+ ERQR S FGIL G+ +A+ VCGTLAARFLST   FQ A ++SML
Sbjct: 120 GSIDCLALAYVADNVLERQRTSVFGILSGITTAALVCGTLAARFLSTALTFQVAALLSML 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           AA YMR+FL++ +P    ++LT+PI+    +   Q++ + P K  V KKIPSI+ +I LL
Sbjct: 180 AAVYMRIFLEESLPQ--SENLTQPILKSGQDDHCQDDGDLPRKPMVSKKIPSIQAIISLL 237

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
           +SSVT SQAA+VAFF  LS GG+QAS +Y+LKA+FHF+KNQ+ADLML+ G++G  SQLLF
Sbjct: 238 KSSVTFSQAAIVAFFHSLSYGGLQASIMYYLKARFHFSKNQYADLMLLVGVSGMASQLLF 297

Query: 303 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSK 362
           MPLLAP++ E KLL++GL     N  + S++ SAWVPYATT FSV  VF  P  RSIVSK
Sbjct: 298 MPLLAPLVAEEKLLAIGLLGGIANALLYSVACSAWVPYATTIFSVFAVFIPPCLRSIVSK 357

Query: 363 QVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRA 422
           Q+GPNEQGKAQGCISGI S ANI+SPLI+SPLTALFLS+ APFNFPGF  +CIG A + A
Sbjct: 358 QIGPNEQGKAQGCISGIISLANIISPLIYSPLTALFLSEDAPFNFPGFIFVCIGFAIMIA 417

Query: 423 FTYELLL 429
           F   LL+
Sbjct: 418 FFQSLLI 424

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083179|ref|XP_002306959.1| predicted protein [Populus trichocarpa] gi|222856408|gb|EEE93955.1| predicted protein [Populus trichocarpa]

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 273/430 (63%), Positives = 346/430 (80%), Gaps = 8/430 (1%)

Query: 5   KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGT 64
           K +  LSHLF+T+FL  F+ +MV+PAITDVTM ALCPG DECSLAIYL+GFQQAIIGLGT
Sbjct: 2   KTLSGLSHLFITIFLHNFSAVMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGLGT 61

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           LVMMP+IGN+SD+YGRKA+LT+PL+L I+P AILAY R+ +FFYAYY ++TL AMVCEGS
Sbjct: 62  LVMMPLIGNMSDKYGRKALLTVPLSLVIVPSAILAYSRTRNFFYAYYVVKTLIAMVCEGS 121

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAA 184
           + CLALAYVADN+ E +RASAFGIL G+ S++FVCG L+ RFLST S FQ +  V++ + 
Sbjct: 122 VPCLALAYVADNVPEGRRASAFGILSGIASSAFVCGNLSTRFLSTASTFQVSASVAIASL 181

Query: 185 AYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIP-----VCKKIPSIRDLI 239
            YMR FL+D +    D+ LT PI+T   +   + +  +  +IP     + K  PS+ D++
Sbjct: 182 VYMRFFLQDSI---IDEQLTAPILTSNGKPKGKGKDYATNEIPSKNVQIFKSAPSLEDML 238

Query: 240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQ 299
           CLL+SSVTLSQAAVVAFF  L+E G+ AS LY+LKA+FHFNK+QFADLM+I G+AGT+SQ
Sbjct: 239 CLLKSSVTLSQAAVVAFFYSLAEVGLHASLLYYLKARFHFNKDQFADLMVITGIAGTLSQ 298

Query: 300 LLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSI 359
           L+ MP+LAP LGEA+LL++GLF  C+++F+ SI+W+ WVPY    FSVL+VF+ P  RSI
Sbjct: 299 LVLMPILAPALGEARLLAVGLFFTCVHVFLYSIAWTFWVPYVAAMFSVLIVFSQPCMRSI 358

Query: 360 VSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLAS 419
           VSKQVG  EQGKAQGCISGISSFAN++SPL+FSPLTALFLS+ APF+FPGFSIMC+G AS
Sbjct: 359 VSKQVGSCEQGKAQGCISGISSFANVISPLLFSPLTALFLSERAPFHFPGFSIMCVGFAS 418

Query: 420 VRAFTYELLL 429
           + AF   L++
Sbjct: 419 MIAFIQSLMI 428

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539072|ref|XP_002510601.1| tetracycline transporter, putative [Ricinus communis] gi|223551302|gb|EEF52788.1| tetracycline transporter, putative [Ricinus communis]

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 276/427 (64%), Positives = 345/427 (80%), Gaps = 4/427 (0%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  LSHLF+T+FL  F+T MV+PAITDVTM ALCPG DECSLAIYL+GFQQAIIGL
Sbjct: 1   MEK-LSGLSHLFMTIFLHNFSTFMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GTLVMMP++GNLSD+YGRKA+LT+P++L++IPLA LAY R+  FFYAYY ++TLTAMVCE
Sbjct: 60  GTLVMMPLVGNLSDKYGRKALLTIPMSLTVIPLATLAYSRTTYFFYAYYVMKTLTAMVCE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GS++CLALAYVADN+ E +RASAFGIL G+ S++FVCGTL+ RFLST S FQ +  ++++
Sbjct: 120 GSVHCLALAYVADNVPEARRASAFGILSGIGSSAFVCGTLSTRFLSTASTFQVSASMAVV 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           A  YM+VFL+D +    D +LT PII+     V     NS     V + +PS+ D+ICLL
Sbjct: 180 AIVYMKVFLQDSIV---DKNLTTPIISNGKGKVYVQIENSSENEQVFRTMPSLEDMICLL 236

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
           +SSVT +QAA+VAFF  LSE G+ AS +Y+LKA+FHFNKNQFADLM+I+G+AGTISQLL 
Sbjct: 237 KSSVTFTQAAIVAFFINLSEVGLHASLMYYLKARFHFNKNQFADLMVISGIAGTISQLLL 296

Query: 303 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSK 362
           MPLLAP LGEA+LLS+GLF  CI+MF+ SI+WS WVPYA    S+L VF+ P  R+IVSK
Sbjct: 297 MPLLAPALGEARLLSVGLFFTCIHMFLYSIAWSFWVPYAAALLSILFVFSQPCLRTIVSK 356

Query: 363 QVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRA 422
           QVG  EQGKAQG +SG+ S AN+VSPL+FSPLTALFLS+ APF+FPGFSIMC+G AS+ A
Sbjct: 357 QVGACEQGKAQGFVSGLGSLANVVSPLVFSPLTALFLSERAPFHFPGFSIMCVGFASMIA 416

Query: 423 FTYELLL 429
               +++
Sbjct: 417 LIQSMMM 423

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486381|gb|ABK95031.1| unknown [Populus trichocarpa]

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 272/435 (62%), Positives = 345/435 (79%), Gaps = 12/435 (2%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  LSHLF+T+FL  F+T MV+PAITDVTM ALCPG DECSLAIYL+GFQQAIIGL
Sbjct: 1   MEK-LSGLSHLFMTIFLHNFSTFMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GTLV MP+IGN+SD+YGRKA+LT+P++L I+P AILAY R+ +FFYAYY +RTL AMVCE
Sbjct: 60  GTLVTMPLIGNMSDKYGRKALLTVPMSLIIVPSAILAYSRTRNFFYAYYVVRTLMAMVCE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GS+ CLALAYVADN+ E +RAS FGIL G+ S++FVCG L+ RFLST+S FQ + +V++ 
Sbjct: 120 GSVQCLALAYVADNVPESRRASTFGILSGIASSAFVCGNLSTRFLSTSSTFQVSALVAIA 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQN-------ESNSPVK-IPVCKKIPS 234
           A  YMR FL++ +    D+ L+ PI+T +  G  +            P K + V K  PS
Sbjct: 180 ALVYMRFFLQESI---IDEQLSTPILTYKGNGKGKGKANAACFAHEIPSKNVQVFKSAPS 236

Query: 235 IRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLA 294
           + D++CLL+SSVTLSQAAVVAFF  L+E G+ AS +Y+LKAQFHF+K+QFA LM+I+G+A
Sbjct: 237 LEDMLCLLKSSVTLSQAAVVAFFYSLAEVGLHASLMYYLKAQFHFSKDQFAVLMVISGIA 296

Query: 295 GTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATP 354
           GT+SQL+ MPLL P LGEA+LL++GLF  C+++F+ SI+W+ WVPY  + FS+L VF+ P
Sbjct: 297 GTVSQLVIMPLLTPALGEARLLAVGLFFTCVHVFLYSIAWTFWVPYVASMFSLLFVFSQP 356

Query: 355 SFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMC 414
             RSIVSKQVG  EQGKAQGCISGISSFAN++SPL+FSPLTALFLS+ APF FPGFSIMC
Sbjct: 357 CMRSIVSKQVGSCEQGKAQGCISGISSFANVISPLVFSPLTALFLSERAPFPFPGFSIMC 416

Query: 415 IGLASVRAFTYELLL 429
           +G AS+ AF   L++
Sbjct: 417 VGFASMIAFIQSLMM 431

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459764|ref|XP_002284761.1| PREDICTED: hippocampus abundant transcript 1 protein [Vitis vinifera] gi|302141709|emb|CBI18912.3| unnamed protein product [Vitis vinifera]

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 274/425 (64%), Positives = 339/425 (79%), Gaps = 4/425 (0%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  L HLF+TVFL+ FAT MV+PAITDVTM ALCPG DECS+AIYL+GFQQ IIGL
Sbjct: 1   MEK-LSGLRHLFMTVFLFNFATFMVIPAITDVTMAALCPGRDECSIAIYLTGFQQVIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GTLVMMP++GNLSD YGRKA+LT+P+ L+IIPLAILA+ RS +FFYAY+ L+TLT+MVCE
Sbjct: 60  GTLVMMPLVGNLSDMYGRKALLTIPMCLTIIPLAILAWSRSRNFFYAYFVLKTLTSMVCE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GS++CL LAYVADNI E +RASAFG+L GV S++FVCGTL+ARFL T+S FQ A  V+ +
Sbjct: 120 GSVHCLTLAYVADNIPEIRRASAFGVLSGVGSSAFVCGTLSARFLKTSSTFQVAASVAAV 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           AA YM++FL D V  D   D     I E+   V   +  S    PV K +PS+ D++ LL
Sbjct: 180 AAVYMKLFLPDSVIKDGVLDRA---ILEQKPCVIHLDGESAQDSPVFKSMPSLDDMLSLL 236

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
           ++S T ++AA+VAFFS L + G+  S +Y+LKA+FHFNK+QFADLM+I+G+AGTISQL+ 
Sbjct: 237 QTSSTFTKAAIVAFFSNLGDVGLHTSLMYYLKARFHFNKHQFADLMMISGIAGTISQLVL 296

Query: 303 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSK 362
           MP+LAP +GE KLL++GL  +C +MF+ SI+WS WVPYA   FS+L+VFA P  RSI SK
Sbjct: 297 MPILAPTIGEEKLLAIGLLFSCSHMFLYSIAWSFWVPYAAAMFSILIVFAPPCIRSIASK 356

Query: 363 QVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRA 422
           QVGP+EQGK QGCISGISSFA++VSPL F+PLTALFLS GAPFNFPGFSIMCIG AS+ A
Sbjct: 357 QVGPSEQGKVQGCISGISSFAHLVSPLAFTPLTALFLSDGAPFNFPGFSIMCIGFASMIA 416

Query: 423 FTYEL 427
           F   L
Sbjct: 417 FLQSL 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509042|ref|XP_003523261.1| PREDICTED: hippocampus abundant transcript-like protein 1-like [Glycine max]

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 263/425 (61%), Positives = 338/425 (79%), Gaps = 2/425 (0%)

Query: 5   KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGT 64
            ++  LSHLF+TVFL  F+  MVVPAITDVTM ALCPG DECSLAIY++GFQQA+IGLGT
Sbjct: 2   DKLYGLSHLFMTVFLHNFSMFMVVPAITDVTMAALCPGQDECSLAIYITGFQQAMIGLGT 61

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           LVMMP++GNLSD+YGRKA+LTLP+ L+IIP+ ILAY R+  FFY YY  + L +MVCEGS
Sbjct: 62  LVMMPLLGNLSDKYGRKAILTLPMILTIIPVGILAYSRTKKFFYVYYVFKILISMVCEGS 121

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAA 184
           + CLALAYVADN+ E  R++ FGIL G+ SA+FVC TL+ARFLS+   FQ +T+++++ A
Sbjct: 122 VPCLALAYVADNVPESGRSTVFGILSGIGSAAFVCATLSARFLSSALTFQVSTLIAVIGA 181

Query: 185 AYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS 244
            YM+ FL+D V   DD  L  PII++    +++   N   K  + K + SI+DL   L S
Sbjct: 182 LYMQFFLRDSV--IDDKHLYTPIISQGNPIISKVNGNLESKKHLLKALRSIKDLTSFLNS 239

Query: 245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMP 304
           S+T++QAA+VAFF+ L++ G+  S LYFLKAQFHF+KNQFADLM+I+G+AGT+SQLL MP
Sbjct: 240 SLTINQAAIVAFFNSLADVGLHGSLLYFLKAQFHFDKNQFADLMVISGIAGTVSQLLLMP 299

Query: 305 LLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQV 364
           +LAPILGE +LLS+GLF  C++MF+ S++WS+ VPYA+  FS+L VF+ P  RSIVSK+ 
Sbjct: 300 ILAPILGETRLLSVGLFFHCVHMFLYSMAWSSLVPYASAMFSILYVFSHPCIRSIVSKEA 359

Query: 365 GPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFT 424
           GP+EQGKAQGCISGI S A+IVSPL+FSPLTALFLS+ APF+FPGFSIMCIG AS+ +F 
Sbjct: 360 GPHEQGKAQGCISGICSIAHIVSPLVFSPLTALFLSEKAPFDFPGFSIMCIGFASMISFV 419

Query: 425 YELLL 429
             L+L
Sbjct: 420 QSLML 424

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517952|ref|XP_003527649.1| PREDICTED: hippocampus abundant transcript-like protein 1-like [Glycine max]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 264/425 (62%), Positives = 336/425 (79%), Gaps = 2/425 (0%)

Query: 5   KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGT 64
            ++  LSHLF+ VFL  F+  MVVPAITDVTM ALCPG DECSLAIY++GFQQA+IGLGT
Sbjct: 2   DKLYGLSHLFMAVFLHNFSMFMVVPAITDVTMAALCPGQDECSLAIYITGFQQAMIGLGT 61

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           LVMMP++GNLSD+YGRKA+LT+P+ L+IIP+ ILAY R+  FFY YY  + L +M+CEGS
Sbjct: 62  LVMMPLLGNLSDKYGRKAILTVPMILTIIPVGILAYSRTKKFFYVYYVFKILISMICEGS 121

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAA 184
           + CL LAYVADNI E  R++AFGIL G+ SA+FVCGTL+ARFLST   FQ +T+++++ A
Sbjct: 122 VPCLGLAYVADNIPESGRSTAFGILSGIASAAFVCGTLSARFLSTALTFQVSTLIAVIGA 181

Query: 185 AYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS 244
            YM+ FL+D     DD  L  PII++E   +++       K  + K + SI DL   L S
Sbjct: 182 LYMQFFLRDSA--IDDKHLYTPIISQENPIISKVNGKLESKKHLFKALRSIEDLTSFLNS 239

Query: 245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMP 304
           S+T++QAA+VAFF+ L++ G+  S LYFLKAQFHF+KNQFADLM+I+G+AGT+SQLL MP
Sbjct: 240 SLTITQAAIVAFFNSLADVGLHGSLLYFLKAQFHFDKNQFADLMVISGIAGTVSQLLLMP 299

Query: 305 LLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQV 364
           +LAPILGEA+LLS+GLF  CI+MF+ SI+WS+ VPYA+  FS+L VF+ P  RSIVSKQ 
Sbjct: 300 ILAPILGEARLLSVGLFFHCIHMFLYSIAWSSLVPYASAMFSILFVFSHPCIRSIVSKQA 359

Query: 365 GPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFT 424
           GP+EQGKAQGCISGI S A+IVSPL+FSPLTALFLS+ APF+FPGFSIMCIG AS+ +  
Sbjct: 360 GPHEQGKAQGCISGICSIAHIVSPLVFSPLTALFLSERAPFDFPGFSIMCIGFASMISLV 419

Query: 425 YELLL 429
             ++L
Sbjct: 420 QSMML 424

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467111|ref|XP_003603840.1| Hippocampus abundant transcript-like protein [Medicago truncatula] gi|355492888|gb|AES74091.1| Hippocampus abundant transcript-like protein [Medicago truncatula]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 258/448 (57%), Positives = 335/448 (74%), Gaps = 23/448 (5%)

Query: 3   MEK-EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAI-- 59
           MEK  +  LSHLF+TVFL   +T MV PAITDVTM ALCPG DECS+AIYL+GFQQA+  
Sbjct: 1   MEKLNMYGLSHLFMTVFLHNLSTFMVQPAITDVTMAALCPGQDECSIAIYLTGFQQAVRY 60

Query: 60  ------------------IGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR 101
                             IG+GTLVMMP++G+LSD+YGRKA+LTLP+TL IIPL ILAY 
Sbjct: 61  IVSPIYLNILHSFSKLTMIGMGTLVMMPILGDLSDKYGRKAILTLPMTLMIIPLGILAYS 120

Query: 102 RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT 161
           R+ +FFY YY  + +  M+C+G + CLALAYVADN+ E +R+SAFG+L G+ S++FVCGT
Sbjct: 121 RTKTFFYVYYVFKIIINMICDGCVPCLALAYVADNVPEGRRSSAFGVLSGIGSSAFVCGT 180

Query: 162 LAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESN 221
           +AARFLS    FQ +T V++L A YM++FL+D V   D++ L  PII++    + +    
Sbjct: 181 VAARFLSAAQTFQVSTFVAVLGAVYMQIFLRDSVA--DENQLYTPIISQGKPPIAKINGK 238

Query: 222 SPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNK 281
           S   +P+ K + S+RD+   L SS  ++QA++VAFFS L++ G+  S +Y+LKA+FHF+K
Sbjct: 239 SKANMPLLKALSSLRDITSFLNSSKIITQASIVAFFSNLADVGLHGSMMYYLKARFHFDK 298

Query: 282 NQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA 341
           N FADLM+I+G+AGT+SQL  MP+ AP LGEA+LLS+GLF  C++MFI SI+WS+WVPYA
Sbjct: 299 NHFADLMIISGIAGTVSQLFLMPIFAPTLGEARLLSIGLFFHCVHMFIYSIAWSSWVPYA 358

Query: 342 TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSK 401
              FS+L VF+ P  RSIVSKQV P EQG+AQGCISGI S A+IVSPL FSPLTALFLS+
Sbjct: 359 AAMFSILFVFSQPCIRSIVSKQVDPREQGRAQGCISGICSIAHIVSPLAFSPLTALFLSE 418

Query: 402 GAPFNFPGFSIMCIGLASVRAFTYELLL 429
            APFNFPGFSIMCIG+AS+ +F   ++L
Sbjct: 419 KAPFNFPGFSIMCIGIASMVSFVQSMML 446

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574133|ref|XP_003555206.1| PREDICTED: hippocampus abundant transcript 1 protein-like [Glycine max]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 262/420 (62%), Positives = 327/420 (77%), Gaps = 4/420 (0%)

Query: 10  LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMP 69
           L HLFVT+F+ GF  ++V+PAITDVTM ALCPG D+CSLAIYLSGFQQA+ G+G++VM P
Sbjct: 7   LGHLFVTMFVSGFGGVIVLPAITDVTMAALCPGQDQCSLAIYLSGFQQAMAGVGSVVMTP 66

Query: 70  VIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLA 129
           +IGNLSD+YGRKA+LTLPLT+S+IP  ILAY R   FFYAYY ++TL AM  EGS +CLA
Sbjct: 67  LIGNLSDRYGRKALLTLPLTVSVIPQVILAYSRDTQFFYAYYVVKTLAAMAGEGSFHCLA 126

Query: 130 LAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRV 189
           LAYVAD + + +R SAFGIL GV SASFV GTLAARFLST   FQ A+++SM+A  YMR+
Sbjct: 127 LAYVADKVPDGKRTSAFGILAGVGSASFVGGTLAARFLSTALTFQVASVLSMVALVYMRI 186

Query: 190 FLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLS 249
           FLKD VP      L +P++ E  E  ++++S SP      KK+PS+ DLICLLR S T S
Sbjct: 187 FLKDSVPGGA---LRQPLLKEVEEPCDEDDS-SPRATGTFKKLPSLGDLICLLRCSPTFS 242

Query: 250 QAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI 309
           QAA+V+FF+ L++GG+ A  LY+LKA+F FNKNQFADL++I G+  T++QL FMP+L P+
Sbjct: 243 QAAMVSFFNSLADGGLMAVLLYYLKARFQFNKNQFADLLMITGIGATLAQLFFMPILVPV 302

Query: 310 LGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQ 369
           +GE KLLS GL  +CIN+F+ SI+W+AWVPYA    SV  VF  PS  SI SKQVGP EQ
Sbjct: 303 IGEEKLLSTGLLISCINVFVYSIAWTAWVPYALAGCSVFAVFVRPSLCSIASKQVGPTEQ 362

Query: 370 GKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLL 429
           G  QGC+S ISSFANI++PLIFSPLTALFLS+ APF FPGFS+MC+GLA + AF   L++
Sbjct: 363 GMVQGCLSAISSFANIIAPLIFSPLTALFLSEEAPFYFPGFSLMCLGLALMVAFFQSLII 422

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
TAIR|locus:2039450	456	AT2G16990 "AT2G16990" [Arabido	0.974	0.936	0.502	1.1e-105
TAIR|locus:2039440	461	AT2G16980 [Arabidopsis thalian	0.958	0.911	0.469	1.8e-96
TAIR|locus:2039430	446	MEE15 "maternal effect embryo	0.933	0.917	0.439	1.4e-89
TAIR|locus:2157592	282	AT5G42210 "AT5G42210" [Arabido	0.566	0.879	0.498	1.3e-59
UNIPROTKB|Q5SR56	506	HIATL1 "Hippocampus abundant t	0.737	0.638	0.229	5.9e-17
UNIPROTKB|A4IF94	502	HIATL1 "Hippocampus abundant t	0.737	0.643	0.232	1.3e-16
MGI|MGI:1913881	507	Hiatl1 "hippocampus abundant t	0.575	0.497	0.220	5.8e-13
UNIPROTKB|Q5ZJK7	492	HCN2 "Uncharacterized protein"	0.575	0.512	0.238	4.5e-12
TIGR_CMR|BA_0835	400	BA_0835 "multidrug resistance	0.374	0.41	0.236	4.8e-12
ZFIN|ZDB-GENE-030131-834	493	hiat1a "hippocampus abundant t	0.598	0.531	0.234	7.6e-12

TAIR|locus:2039450 AT2G16990 "AT2G16990" [Arabidopsis thaliana (taxid:3702)]

 Score = 1046 (373.3 bits), Expect = 1.1e-105, P = 1.1e-105
 Identities = 219/436 (50%), Positives = 278/436 (63%)

Query:     3 MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDE-CSLAIYLSGFQQAIIG 61
             ME  I  L H+  TVFL  FA  MVVP ITDVT+ A+C G D+ CSLA+YL+GFQQ  IG
Sbjct:     1 MEDGIGGLRHMLATVFLSAFAGFMVVPVITDVTVAAVCSGPDDSCSLAVYLTGFQQVAIG 60

Query:    62 LGTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYYALRTLTAMVC 121
             +GT++MMPVIGNLSD+YG K +                YRR I FFY +Y  + LT+MVC
Sbjct:    61 MGTMIMMPVIGNLSDRYGIKTILTLPMCLSIVPPVILGYRRDIKFFYVFYISKILTSMVC 120

Query:   122 EGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSM 181
             EG+++CLA AYVA NI    R SAFGIL G+ + + + GTL ARFL     FQ + I   
Sbjct:   121 EGTVDCLAYAYVAVNIHGSTRISAFGILAGIKTIAGLFGTLVARFLPIALTFQVSAISFF 180

Query:   182 LAAAYMRVFLKXXXXXXXXXXLTRPIITEET-EGVNQNE------SNSPVKIPVC-KKIP 233
             +   YMRVFLK          L      +E  + +N         ++ P+K  V  KK  
Sbjct:   181 VGLVYMRVFLKEKLNDDEDDDLHHGTYHQEDHDSINTTMLAEPILNDRPIKTQVFHKKYS 240

Query:   234 SIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGL 293
             S++D+I L+++S    QA VV FFS  S+ GM+++FLYFLKA+F F+K QFADL+L+  +
Sbjct:   241 SLKDMISLMKTSTIFFQALVVTFFSSFSDSGMESAFLYFLKARFGFDKKQFADLLLLITI 300

Query:   294 AGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFAT 353
              G+ISQL  +P  A  +GE KLLS GLF   INM I SISW+ WVPY TT F    +F  
Sbjct:   301 VGSISQLFVLPRFASAIGECKLLSTGLFMEFINMAIVSISWAPWVPYLTTVFVPGALFVM 360

Query:   354 PSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIM 413
             PS   I S+QVGP EQGK QGCISG+ SF  +V+P +FSPLTALFLSK APF FPGFS++
Sbjct:   361 PSVCGIASRQVGPGEQGKVQGCISGVRSFGKVVAPFVFSPLTALFLSKNAPFYFPGFSLL 420

Query:   414 CIGLASVRAFTYELLL 429
             CI L+S+  F   LL+
Sbjct:   421 CISLSSLIGFFQSLLI 436

GO:0008493 "tetracycline transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2039440 AT2G16980 [Arabidopsis thaliana (taxid:3702)]

 Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
 Identities = 203/432 (46%), Positives = 266/432 (61%)

Query:    10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDE-CSLAIYLSGFQQAIIGLGTLVMM 68
             L HL VTVFL G A  ++ P +TDVT+ A+C GLD+ CSLA+YL+G QQ  +G+GT+VMM
Sbjct:     9 LRHLLVTVFLSGLAEYLIRPVMTDVTVAAVCSGLDDSCSLAVYLTGVQQVTVGMGTMVMM 68

Query:    69 PVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYYALRTLTAMVCEGSINCL 128
             PVIGNLSD+YG KAM                YRR  +FFYA+Y ++TL  MVC+G+I+CL
Sbjct:    69 PVIGNLSDRYGIKAMLTLPMCLSVLPPAILGYRRDTNFFYAFYVIKTLFDMVCQGTIDCL 128

Query:   129 ALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMR 188
             A AYVA N+   +R S FGIL GV S S VC +L+ARFLS  S FQ A I   +   YMR
Sbjct:   129 ANAYVAKNVHGTKRISMFGILAGVSSISGVCASLSARFLSIASTFQVAAISLFIGLVYMR 188

Query:   189 VFLKXXXXXXXXXXLTRPIITEETEGVNQNES----------NSPVKIPVCK-KIPSIRD 237
             VFLK                    + V+              ++P K  V   K  S +D
Sbjct:   189 VFLKERLQDADDDDEADSGGCRSHQEVHNGGDLKMLTEPILRDAPTKTHVFNSKYSSWKD 248

Query:   238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTI 297
             ++ L+ +S  L QA VV FF+  SE G  ++ +YFLKA+F FNKN FA+L L+  + G+I
Sbjct:   249 MVSLINNSTILIQALVVTFFATFSESGRGSALMYFLKARFGFNKNDFAELFLLVTIIGSI 308

Query:   298 SQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFR 357
             SQL  +P L+  +GE K+LS GL     N    S++WS WVPYA T      +F  PS  
Sbjct:   309 SQLFILPTLSSTIGERKVLSTGLLMEFFNATCLSVAWSPWVPYAMTMLVPGAMFVMPSVC 368

Query:   358 SIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGL 417
              I S+QVG +EQGK QGCISG+ +FA +V+P ++SPLTALFLS+ APF FPGFSI+CI +
Sbjct:   369 GIASRQVGSSEQGKVQGCISGVRAFAQVVAPFVYSPLTALFLSENAPFYFPGFSILCIAI 428

Query:   418 ASVRAFTYELLL 429
             + +  F   LL+
Sbjct:   429 SLMIGFLQSLLI 440

GO:0005215 "transporter activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IEA

GO:0008493 "tetracycline transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2039430 MEE15 "maternal effect embryo arrest 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 194/441 (43%), Positives = 260/441 (58%)

Query:     4 EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDE-CSLAIYLSGFQQAIIGL 62
             E  +  L HL  TVFL GF+  +V P +TDVT+ A+C GL+E CSLA+YL+G +Q  +GL
Sbjct:     3 EYRLGELRHLLTTVFLSGFSEFLVKPVMTDVTVAAVCSGLNETCSLAVYLTGVEQVTVGL 62

Query:    63 GTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYYALRTLTAMVCE 122
             GT+VMMPVIGNLSD+YG K +                YRR  +FFYA+Y  + L  M   
Sbjct:    63 GTMVMMPVIGNLSDRYGIKTLLTLPMCLSILPPAILAYRRDTNFFYAFYITKILFDM--- 119

Query:   123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
                        A N+  R+R S FG+L GV S S VC T +AR L   S FQ A I    
Sbjct:   120 -----------AKNVCGRKRISMFGVLAGVRSISGVCATFSARLLPIASIFQVAAISFFF 168

Query:   183 AAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNES------------NSPVKIPVC- 229
                YMRVFLK                 + T G N ++             ++P KI +  
Sbjct:   169 GLVYMRVFLKERLHDDDEDDCDED---DNTSGRNHHDGGDLTMLAEPILRDAPTKIHIVL 225

Query:   230 -KKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLM 288
               K  S++D++ L+++S  L Q  VV FF+  ++ GMQ++FLYFLKA+F FNKN FA+L+
Sbjct:   226 NTKYSSLKDMVSLIKNSTILVQTLVVTFFATFAQSGMQSAFLYFLKARFGFNKNDFAELI 285

Query:   289 LIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVL 348
             L+  + G+ISQL  +P L   +GE ++LS GL    +N    S+SWSAWVPYATT    +
Sbjct:   286 LLVTIIGSISQLFILPKLVSAIGERRVLSTGLLMDSVNAACLSVSWSAWVPYATTVLVPV 345

Query:   349 VVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFP 408
              +F  PS   I S+QVGP EQGK QGCISG+ SF+ +V+P I+SPLTALFLS+ APF FP
Sbjct:   346 TMFVMPSVCGIASRQVGPGEQGKVQGCISGVKSFSGVVAPFIYSPLTALFLSEKAPFYFP 405

Query:   409 GFSIMCIGLASVRAFTYELLL 429
             GFS++C+  + +  F   LL+
Sbjct:   406 GFSLLCVTFSLMIGFFLSLLI 426

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008493 "tetracycline transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2157592 AT5G42210 "AT5G42210" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 125/251 (49%), Positives = 165/251 (65%)

Query:   179 VSMLAAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL 238
             + +L+  YMR+FL           L  PI+  E       E     +  + + I  + ++
Sbjct:    23 MGILSTLYMRLFLPDSIRDNS---LGAPIVINEKLSSPLLEDCPGHRNRIFRAIRLVHEM 79

Query:   239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTIS 298
               L+RSSV L Q A+V+FFS L+E G+ AS +Y+LKA+FHFNK+QFADLM+I G +G+IS
Sbjct:    80 ASLMRSSVPLFQVAMVSFFSSLAEAGLHASSMYYLKAKFHFNKDQFADLMIIVGASGSIS 139

Query:   299 QLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRS 358
             QLLFMP+L P L E +LLS+GLF  C +MF+  ++WS+WVPY    F++  +F +   RS
Sbjct:   140 QLLFMPVLVPALKEERLLSIGLFFGCAHMFLLCVAWSSWVPYMAAIFALFSIFPSSCMRS 199

Query:   359 IVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLA 418
             IVSKQV   EQGKAQG IS I S AN++SPL FSPLT  FLS+ APFNFPGFSIMC G A
Sbjct:   200 IVSKQVASYEQGKAQGIISSICSLANVISPLAFSPLTDWFLSERAPFNFPGFSIMCAGFA 259

Query:   419 SVRAFTYELLL 429
                AF   L++
Sbjct:   260 MTIAFIQSLMI 270

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q5SR56 HIATL1 "Hippocampus abundant transcript-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 212 (79.7 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
 Identities = 80/348 (22%), Positives = 146/348 (41%)

Query:    52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYY 111
             ++G  Q + GL + +  P+IG LSD +GRK                      IS ++ Y+
Sbjct:    81 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMR----ISPWW-YF 135

Query:   112 ALRTLTAMVCEGSIN-CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTT 170
             A+ +++ +    S+   +  AYVAD   E +R++A+G +    +AS V       +LS +
Sbjct:   136 AMISVSGVF---SVTFSVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSAS 192

Query:   171 SAFQAATIVSMLAAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCK 230
                    +V+ + A     F+           + RP+         Q +  + +K  V K
Sbjct:   193 YGDSLVVLVATVVALLDICFILVAVPESLPEKM-RPVSWGAQISWKQADPFASLK-KVGK 250

Query:   231 KIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLI 290
                 +  LIC            +  F S L E G  +SF  +L+    F   + A  + +
Sbjct:   251 DSTVL--LIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIAAFIAM 296

Query:   291 AGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVV 350
              G+   ++Q  F+ +L   LG    + LGL    + +        AW+ +A    + +  
Sbjct:   297 VGILSIVAQTAFLSILMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSS 356

Query:   351 FATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF 398
                P+  ++VS+    ++QG AQG I+GI    N + P ++  +  +F
Sbjct:   357 ITFPAISALVSRNAESDQQGVAQGIITGIRGLCNGLGPALYGFIFYMF 404

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A4IF94 HIATL1 "Hippocampus abundant transcript-like protein 1" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
 Identities = 81/348 (23%), Positives = 145/348 (41%)

Query:    52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYY 111
             ++G  Q + GL + +  P+IG LSD +GRK                      IS ++ Y+
Sbjct:    78 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMR----ISPWW-YF 132

Query:   112 ALRTLTAMVCEGSIN-CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTT 170
             A+ +++ +    S+   +  AYVAD   E +R++A+G +    +AS V       +LS +
Sbjct:   133 AMISISGVF---SVTFSVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSAS 189

Query:   171 SAFQAATIVSMLAAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCK 230
                    +V+ + A     F+           + RP+         Q +  + +K  V K
Sbjct:   190 YGDSLVVLVATVVALLDICFILLAVPESLPEKM-RPLSWGARISWKQADPFASLK-KVGK 247

Query:   231 KIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLI 290
                 +  LIC            +  F S L E G  +SF  +L+    F   + A  + +
Sbjct:   248 DSTIL--LIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSIKIAAFIAM 293

Query:   291 AGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVV 350
              G+   ++Q +F+  L   LG    + LGL      +        AW+ +A    + +  
Sbjct:   294 VGILSIVAQTVFLTSLMRSLGNKNTVLLGLGFQMFQLAWYGFGSQAWMMWAAGIVAAVSS 353

Query:   351 FATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF 398
                P+  ++VS+    N+QG AQG I+GI    N + P ++  +  +F
Sbjct:   354 ITFPAVSTLVSQNADSNQQGVAQGIITGIRGLCNGLGPALYGFIFYMF 401

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

MGI|MGI:1913881 Hiatl1 "hippocampus abundant transcript-like 1" [Mus musculus (taxid:10090)]

 Score = 176 (67.0 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
 Identities = 59/268 (22%), Positives = 112/268 (41%)

Query:   131 AYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVF 190
             AYVAD   E +R++A+G +    +AS V       +LS         +V+ L A     F
Sbjct:   155 AYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSANYGDSLVVLVATLVALLDICF 214

Query:   191 LKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQ 250
             +           + RP        ++  +++    +   KK+   +D      S+V L  
Sbjct:   215 ILIAVPESLSEKI-RP--ASWGAQISWKQADPFASL---KKVG--KD------STVLL-- 258

Query:   251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL 310
               +  F S L E G  +SF  +L+    F   +    + + G+   ++Q +F+  L   L
Sbjct:   259 ICITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIVAFIAMVGILSIVAQTVFLSKLMRSL 318

Query:   311 GEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQG 370
             G    + LGL    + +        AW+ +A    + +     P+  +++S+    ++QG
Sbjct:   319 GNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSSITFPAVSALISRNAESDQQG 378

Query:   371 KAQGCISGISSFANIVSPLIFSPLTALF 398
              AQG ++GI    N + P ++  +  +F
Sbjct:   379 VAQGIVTGIRGLCNGLGPALYGFIFYMF 406

GO:0005215 "transporter activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q5ZJK7 HCN2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 191 (72.3 bits), Expect = 4.5e-12, P = 4.5e-12
 Identities = 64/268 (23%), Positives = 115/268 (42%)

Query:   131 AYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVF 190
             AYVAD   E +R++A+G++    +AS V       +LS   A+   T+V +LA+    V 
Sbjct:   145 AYVADITQEHERSTAYGLVSATFAASLVTSPAIGAYLS--QAY-GDTLVVVLASG---VA 198

Query:   191 LKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQ 250
             L            + P   EE   V+     +P+         S+R +        T+  
Sbjct:   199 LLDIGFILLAVPESLP---EEMRPVSWG---APISWEQADPFASLRKV----GQDSTVLL 248

Query:   251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL 310
               +  F S L E G  +SF  +L+    F+    A  + + G+   ++Q + + +L   +
Sbjct:   249 ICITVFLSYLPEAGQYSSFFLYLRQVIGFSSETVAAFIGVVGILSILAQTVVLGILMRSI 308

Query:   311 GEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQG 370
             G    + LGL    + +         W+ +A  A + +     P+  ++VS+   P++QG
Sbjct:   309 GNKNTILLGLGFQILQLAWYGFGSQPWMMWAAGAVAAMSSITFPAISAMVSRNADPDQQG 368

Query:   371 KAQGCISGISSFANIVSPLIFSPLTALF 398
               QG I+GI    N + P ++  +  LF
Sbjct:   369 VVQGMITGIRGLCNGLGPALYGFVFYLF 396

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TIGR_CMR|BA_0835 BA_0835 "multidrug resistance protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 141 (54.7 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
 Identities = 40/169 (23%), Positives = 71/169 (42%)

Query:   251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL 310
             A ++ F         +  F  F   +F F     A ++ I+ + G + Q+     L  + 
Sbjct:   220 AFIIVFVLAFGLSAYETVFSLFSDHKFGFTPKDIAAIITISSIFGVVVQVFMFGKLVDMF 279

Query:   311 GEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVV-FATPSFRSIVSKQVGPNEQ 369
             GE  L+ + L    +  F+ ++ ++ W+    T F  L      P+  + +SK  G  EQ
Sbjct:   280 GEKVLIQICLIVGAVLAFVSTVVFNYWIVLLVTCFIFLAFDLLRPALTTFLSKAAG-KEQ 338

Query:   370 GKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLA 418
             G   G  S  +S  NI  P +   L  + +    P+ F G  ++ +GLA
Sbjct:   339 GFVAGMNSTYTSLGNIAGPAMGGILFDMNIHY--PYAFSGV-VLIVGLA 384

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0042493 "response to drug" evidence=ISS

ZFIN|ZDB-GENE-030131-834 hiat1a "hippocampus abundant transcript 1a" [Danio rerio (taxid:7955)]

 Score = 189 (71.6 bits), Expect = 7.6e-12, P = 7.6e-12
 Identities = 66/281 (23%), Positives = 115/281 (40%)

Query:   131 AYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVF 190
             AYVAD   E +R++A+G++    +AS V       +LS        T+V +LA A   + 
Sbjct:   145 AYVADITQEHERSTAYGLVSATFAASLVTSPAIGAYLSEV---YGDTLVVILATA---IA 198

Query:   191 LKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQ 250
             L            + P      E +      +P+         S+R +        T+  
Sbjct:   199 LLDICFILVAVPESLP------EKMRPASWGAPISWEQADPFASLRKV----GQDSTVLL 248

Query:   251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL 310
               +  F S L E G  +SF  +L+    F     A  + + G+   ++Q + + +L   +
Sbjct:   249 ICITVFLSYLPEAGPYSSFFLYLRQVIGFTSETVAAFIAVVGILSILAQTVVLGILMRSI 308

Query:   311 GEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQG 370
             G    + LGL    + +         W+ +A  A + +     P+  +IVS+   P++QG
Sbjct:   309 GNKNTILLGLGFQILQLAWYGFGSQPWMMWAAGAVAAMSSITFPAISAIVSRNADPDQQG 368

Query:   371 KAQGCISGISSFANIVSPLIFSPLTALF---LSKGAPFNFP 408
               QG I+GI    N + P ++  +  LF   LS+  P   P
Sbjct:   369 VVQGMITGIRGLCNGLGPALYGFVFYLFHVELSEMDPAESP 409

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	438
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-12
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-10
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	6e-04
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	0.002
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	0.004

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 66.7 bits (163), Expect = 4e-12
 Identities = 80/383 (20%), Positives = 132/383 (34%), Gaps = 44/383 (11%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           LF+  FL G    ++ PA+       L     E  L +           LG  +  P+ G
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLL-------TAFSLGYALAQPLAG 53

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD++GR+ +L + L L  + L +L +  S+        L      +  G++   A A 
Sbjct: 54  RLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL----QGLGGGALFPAAAAL 109

Query: 133 VADNISERQRASAFGILLGVLSASFVCGTLAARFLST----TSAFQAATIVSMLAAAYMR 188
           +AD     +R  A G+L          G L    L++     +AF    I+++LAA    
Sbjct: 110 IADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAA 169

Query: 189 VFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTL 248
           + L    P              E++     E      +P  K +     L  LL      
Sbjct: 170 LLLPRPPP--------------ESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLL------ 209

Query: 249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP 308
                 A            ++L   +     +      L+ +AGL G I +LL   L   
Sbjct: 210 ------ALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDR 263

Query: 309 ILGEAKLLSLGLFAACINMFICSISW---SAWVPYATTAFSVLVVFATPSFRSIVSKQVG 365
           +    +LL   L      + +  +S    S W+  A            P+  ++VS    
Sbjct: 264 LGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAP 323

Query: 366 PNEQGKAQGCISGISSFANIVSP 388
             E+G A G  +   S    + P
Sbjct: 324 KEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 69/407 (16%), Positives = 137/407 (33%), Gaps = 63/407 (15%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           LF+  FL G    ++ PA+  +         ++  L+   +G   +   LG  +   + G
Sbjct: 4   LFLGFFLSGLDRGLLSPALPLL--------AEDLGLSASQAGLIVSAFSLGYALGSLLAG 55

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD++GR+ +L L L L  +   +LA+  S+        L      +  G++   A A 
Sbjct: 56  YLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFL----LGLGGGALYPAAAAL 111

Query: 133 VADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLK 192
           +A+    ++R  A G+         + G L    L+ +  ++   ++  +    +     
Sbjct: 112 IAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLL----- 166

Query: 193 DDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAA 252
                                                         + LL     L   A
Sbjct: 167 ---------------------------------------------ALLLLFLLRLLLLLA 181

Query: 253 VVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE 312
           +  F       G+      +L+     +  +   L+ + GL G +  LL   L   +   
Sbjct: 182 LAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR 241

Query: 313 AKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVV-FATPSFRSIVSKQVGPNEQGK 371
             LL +GL  A + + + +++ S  +           + FA P+  ++ S+   P  +G 
Sbjct: 242 RLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGT 301

Query: 372 AQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLA 418
           A G  +   S    + PL+   L       G        +++   L 
Sbjct: 302 ASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 58  AIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLT 117
           A   LG L+  P+ G L+D++GRK +L + L + ++  A+ A   +I+       L+   
Sbjct: 5   AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG 64

Query: 118 AMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQA 175
           A     +      A +AD     +R  A G++   ++   + G      L+    ++A
Sbjct: 65  AAFALVAGA----ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118

Length = 141

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 69/394 (17%), Positives = 125/394 (31%), Gaps = 57/394 (14%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           L +  F  G    + V  +     +A   G+ E +    ++ +      LG  +  P++ 
Sbjct: 18  LALAAFAIGTTEFVPVGLLPP---IAADLGVSEGAAGQLITAY-----ALGVALGAPLLA 69

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            L+ +  R+ +L   L L I+   + A   S   F      R L  +   G    +A A 
Sbjct: 70  LLTGRLERRRLLLGLLALFIVSNLLSALAPS---FAVLLLARALAGLAH-GVFWSIAAAL 125

Query: 133 VADNISERQRASAFGILLGVLSASFVCGTLAARFLSTT----SAFQAATIVSMLAAAYMR 188
            A  +   +R  A  ++   L+ + V G     FL       + F A  ++++LA   + 
Sbjct: 126 AARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLW 185

Query: 189 VFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS-SVT 247
             L                               P           +R L+ LLR   V 
Sbjct: 186 KLL-------------------------------PPSEISGSLPGPLRTLLRLLRRPGVL 214

Query: 248 LSQAAVVAFFSGLSEGGMQASFLY---FLKAQFHFNKNQFADLMLIAGLAGTISQLLFMP 304
           L   A   F       G  A + Y   FL++   F+ +  + ++L  G+AG I  LL   
Sbjct: 215 LGLLATFLFM-----TGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGR 269

Query: 305 LLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQV 364
           L       A + +L L A  + + +     S  +  A                     ++
Sbjct: 270 LADRGPRRALIAALLLLALAL-LALTFTGASPALALALLFLWGFAFSPALQGLQTRLARL 328

Query: 365 GPNEQGKAQGCISGISSFANIVSPLIFSPLTALF 398
            P+    A        +    +   +   +    
Sbjct: 329 APDAADLAGSLNVAAFNLGIALGAALGGLVLDAL 362

Length = 394

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 31/170 (18%), Positives = 67/170 (39%), Gaps = 2/170 (1%)

Query: 252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG 311
            + AF +GL    +  +   +L      +  +   L+    L   ++Q L   L     G
Sbjct: 2   FLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSD-RFG 60

Query: 312 EAKLLSLGLFAACINMFICSISWSAWVPYATTAFS-VLVVFATPSFRSIVSKQVGPNEQG 370
             ++L +GL    + + +   + S W+         +      P+  ++++    P E+G
Sbjct: 61  RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERG 120

Query: 371 KAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASV 420
           +A G +S        + PL+   L +LF  + A       +++   LA++
Sbjct: 121 RALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAAL 170

Length = 346

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	438
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK03633	381	putative MFS family transporter protein; Provision	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK03699	394	putative transporter; Provisional	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK12382	392	putative transporter; Provisional	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
PRK10054	395	putative transporter; Provisional	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK10504	471	putative transporter; Provisional	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	100.0
PRK11652	394	emrD multidrug resistance protein D; Provisional	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK15011	393	sugar efflux transporter B; Provisional	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	100.0
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	100.0
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	100.0
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	100.0
PRK11043	401	putative transporter; Provisional	100.0
PRK11010	491	ampG muropeptide transporter; Validated	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	100.0
TIGR00896	355	CynX cyanate transporter. This family of proteins	100.0
PRK09528	420	lacY galactoside permease; Reviewed	100.0
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
KOG2615	451	consensus Permease of the major facilitator superf	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK11902	402	ampG muropeptide transporter; Reviewed	100.0
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.98
KOG0569	485	consensus Permease of the major facilitator superf	99.98
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.98
TIGR00901	356	2A0125 AmpG-related permease.	99.97
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.97
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.97
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.97
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.97
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.97
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.97
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.96
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.96
KOG2533	495	consensus Permease of the major facilitator superf	99.96
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.95
KOG0254	513	consensus Predicted transporter (major facilitator	99.95
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.95
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.95
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.95
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.94
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.94
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.94
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.94
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.94
PRK10429	473	melibiose:sodium symporter; Provisional	99.94
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.94
TIGR00805	633	oat sodium-independent organic anion transporter.	99.93
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.93
PRK09848	448	glucuronide transporter; Provisional	99.93
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.93
PRK09669	444	putative symporter YagG; Provisional	99.93
PF13347	428	MFS_2: MFS/sugar transport protein	99.93
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.93
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.92
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.91
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.91
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.9
PTZ00207	591	hypothetical protein; Provisional	99.9
COG2211	467	MelB Na+/melibiose symporter and related transport	99.89
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.89
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.88
PRK11462	460	putative transporter; Provisional	99.88
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.88
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.75
KOG2563	480	consensus Permease of the major facilitator superf	99.75
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.72
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.64
PRK10054	395	putative transporter; Provisional	99.63
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.62
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.59
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.59
KOG3626	735	consensus Organic anion transporter [Secondary met	99.59
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.58
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.56
PRK10642	490	proline/glycine betaine transporter; Provisional	99.56
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.55
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.53
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.52
PRK09874	408	drug efflux system protein MdtG; Provisional	99.52
PRK11663	434	regulatory protein UhpC; Provisional	99.5
TIGR00900	365	2A0121 H+ Antiporter protein.	99.49
PRK09528	420	lacY galactoside permease; Reviewed	99.49
PRK03545	390	putative arabinose transporter; Provisional	99.49
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.49
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.48
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.47
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.47
PRK03633	381	putative MFS family transporter protein; Provision	99.47
PRK10504	471	putative transporter; Provisional	99.46
PRK05122	399	major facilitator superfamily transporter; Provisi	99.46
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.46
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.46
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.46
PRK10091	382	MFS transport protein AraJ; Provisional	99.46
PRK12382	392	putative transporter; Provisional	99.45
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.45
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.45
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.43
PRK15011	393	sugar efflux transporter B; Provisional	99.43
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.42
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.42
PRK10489	417	enterobactin exporter EntS; Provisional	99.42
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.42
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.42
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.41
PRK03699	394	putative transporter; Provisional	99.41
TIGR00891	405	2A0112 putative sialic acid transporter.	99.4
PRK03893	496	putative sialic acid transporter; Provisional	99.4
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.4
PRK11043	401	putative transporter; Provisional	99.39
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.39
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.39
PLN00028	476	nitrate transmembrane transporter; Provisional	99.39
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.38
TIGR00895	398	2A0115 benzoate transport.	99.37
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.37
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.37
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.36
TIGR00893	399	2A0114 d-galactonate transporter.	99.36
KOG3762	618	consensus Predicted transporter [General function	99.36
KOG0637	498	consensus Sucrose transporter and related proteins	99.36
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.35
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.35
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.34
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.33
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.32
PRK09705	393	cynX putative cyanate transporter; Provisional	99.32
PRK12307	426	putative sialic acid transporter; Provisional	99.31
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.3
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.3
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.29
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.29
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.29
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.29
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.28
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.28
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.28
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.26
PRK09952	438	shikimate transporter; Provisional	99.24
PRK10133	438	L-fucose transporter; Provisional	99.23
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.22
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.22
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.22
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.21
PRK11010	491	ampG muropeptide transporter; Validated	99.19
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.18
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.17
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.17
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.16
PTZ00207	591	hypothetical protein; Provisional	99.15
PRK11902	402	ampG muropeptide transporter; Reviewed	99.15
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.13
TIGR00901	356	2A0125 AmpG-related permease.	99.13
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.13
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.12
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.12
KOG3810	433	consensus Micronutrient transporters (folate trans	99.11
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.11
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.11
TIGR00805	633	oat sodium-independent organic anion transporter.	99.09
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.09
TIGR00898	505	2A0119 cation transport protein.	99.08
KOG2615	451	consensus Permease of the major facilitator superf	99.08
PRK15075	434	citrate-proton symporter; Provisional	99.08
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.08
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.06
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.06
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.06
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.05
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.05
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.01
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.0
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.96
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.96
PRK09848	448	glucuronide transporter; Provisional	98.95
KOG0569	485	consensus Permease of the major facilitator superf	98.91
PF13347	428	MFS_2: MFS/sugar transport protein	98.88
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.87
PRK10429	473	melibiose:sodium symporter; Provisional	98.85
COG0477	338	ProP Permeases of the major facilitator superfamil	98.81
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.81
PRK09669	444	putative symporter YagG; Provisional	98.75
KOG2532	466	consensus Permease of the major facilitator superf	98.75
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.74
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.74
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.73
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.73
KOG0254	513	consensus Predicted transporter (major facilitator	98.7
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.69
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.68
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.67
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.65
KOG3762	618	consensus Predicted transporter [General function	98.65
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.64
KOG2533	495	consensus Permease of the major facilitator superf	98.63
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.62
PRK11462	460	putative transporter; Provisional	98.6
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.58
COG2211	467	MelB Na+/melibiose symporter and related transport	98.54
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.51
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.47
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.43
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.38
PF12832	77	MFS_1_like: MFS_1 like family	98.32
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.27
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.27
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.2
KOG2563	480	consensus Permease of the major facilitator superf	98.19
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.18
PF12832	77	MFS_1_like: MFS_1 like family	98.16
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	98.02
KOG3880	409	consensus Predicted small molecule transporter inv	97.96
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.94
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.94
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.91
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.9
COG3202	509	ATP/ADP translocase [Energy production and convers	97.84
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.78
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.56
COG0477	338	ProP Permeases of the major facilitator superfamil	97.55
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.52
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.4
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.4
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.33
PRK03612	521	spermidine synthase; Provisional	97.23
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.19
KOG0637	498	consensus Sucrose transporter and related proteins	97.09
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.05
KOG3626	735	consensus Organic anion transporter [Secondary met	96.92
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.92
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.61
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.46
PRK03612	521	spermidine synthase; Provisional	96.3
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	96.1
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.78
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	95.76
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	94.79
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	94.18
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	93.87
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	93.41
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	92.33
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	91.87
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	90.35
KOG3097	390	consensus Predicted membrane protein [Function unk	88.45
COG3202	509	ATP/ADP translocase [Energy production and convers	86.93
KOG3880	409	consensus Predicted small molecule transporter inv	85.81
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	85.39
KOG2881	294	consensus Predicted membrane protein [Function unk	84.48

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.1e-38  Score=282.92  Aligned_cols=373  Identities=16%  Similarity=0.163  Sum_probs=309.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      +..+..+.++.|.....+.+..+.+|++.+        |+++|....|+..|.|.++..+++|+...+.||+.||++++.
T Consensus        12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~--------dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~   83 (394)
T COG2814          12 WLALLALALAAFAIGTTEFVPVGLLPPIAA--------DLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLG   83 (394)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHhchHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHH
Confidence            345667788888888999999999999977        667888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH
Q 013707           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (438)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (438)
                      .+.++.++.+++++++|   ++.++++|++.|+ +.|.+++...++..|..|+++|++++++...+..++.++|.++|.+
T Consensus        84 ~l~lFi~~n~l~alAp~---f~~Ll~aR~~~g~-a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~  159 (394)
T COG2814          84 LLALFIVSNLLSALAPS---FAVLLLARALAGL-AHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF  159 (394)
T ss_pred             HHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHH
Confidence            99999999999999999   9999999999999 9999999999999999999999999999999999998888766655


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhh
Q 013707          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (438)
Q Consensus       167 ----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (438)
                          +|||..|++.+.++++..+..+..+|  |++..++                             ...+.++.++.+
T Consensus       160 ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~-----------------------------~~~~~~~~~~~l  208 (394)
T COG2814         160 LGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGS-----------------------------LPGPLRTLLRLL  208 (394)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCC-----------------------------CCcchhHHHHHh
Confidence                69999999999999999998899999  2111111                             112334444444


Q ss_pred             cccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 013707          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (438)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  322 (438)
                       |+|.++...+..++...+.+..++|+.+++++..|+|+...++.+..++++.++++ .+.|++.|| +.++.+.....+
T Consensus       209 -~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn-~~gGrl~dr-~~~~~l~~~~~l  285 (394)
T COG2814         209 -RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGN-LLGGRLADR-GPRRALIAALLL  285 (394)
T ss_pred             -cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHH-HHHhhhccc-cchhHHHHHHHH
Confidence             57778888899999999999999999999999999999999999999999999999 899999999 888888888888


Q ss_pred             HHHHHHHhHhcccch-HHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhc
Q 013707          323 ACINMFICSISWSAW-VPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLS  400 (438)
Q Consensus       323 ~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~  400 (438)
                      .++.++.+.+..+.. .... ..+.++......+.......+ .-+|.++.+.+++....++|..+|..++|.++|+.  
T Consensus       286 ~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~--  362 (394)
T COG2814         286 LALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL--  362 (394)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence            888888777766544 3333 344555555555555555666 33599999999999999999999999999999983  


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhc
Q 013707          401 KGAPFNFPGFSIMCIGLASVRAFTYELLLSFYVF  434 (438)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (438)
                            .........+++.+.+.......+++++
T Consensus       363 ------g~~~~~~~~a~l~~~a~~~~~~~~~~~~  390 (394)
T COG2814         363 ------GYAATGWVGAALLLLALLLALLSARKDR  390 (394)
T ss_pred             ------chHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  3334445566666666666655554443

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=1.2e-36  Score=285.12  Aligned_cols=365  Identities=15%  Similarity=0.125  Sum_probs=278.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHH
Q 013707           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (438)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~   89 (438)
                      +..+.+..++.........|.+|.+.+        +++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+..
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~--------~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   82 (390)
T PRK03545         11 VVTLALAAFIFNTTEFVPVGLLSDIAQ--------SFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFV   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHcchHHHHh--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            344444445444444556667787755        567788899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH---
Q 013707           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---  166 (438)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~---  166 (438)
                      +..++++.+.++++   ++.+++.|+++|+ +.+...+...+++.|++|+|+|++++|+.+...++|..+||.+++.   
T Consensus        83 ~~~~~~~~~~~~~~---~~~l~~~r~~~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~  158 (390)
T PRK03545         83 LFIASHVLSALAWN---FTVLLISRIGIAF-AHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ  158 (390)
T ss_pred             HHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            99999999999999   9999999999999 7788888999999999999999999999999999999999988865   


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhccc
Q 013707          167 -LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (438)
Q Consensus       167 -~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (438)
                       ++||+.|++.+++.++..+.....+||+++++++                                 +.++. +...++
T Consensus       159 ~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------------------------~~~~~-~~~~~~  204 (390)
T PRK03545        159 YLGWRTTFLAIGGGALITLLLLIKLLPLLPSEHSG---------------------------------SLKSL-PLLFRR  204 (390)
T ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc---------------------------------hHHHH-HHHHhC
Confidence             4999999999988776665555556654321100                                 11221 224456


Q ss_pred             chhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 013707          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (438)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (438)
                      |.++......++..........+.++|+++.+|+++.+.+.+....+++.++++ +..++++||.++|... .+..+..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~-~~~g~l~dr~~~~~~~-~~~~~~~~  282 (390)
T PRK03545        205 PALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGS-VLFSRLGNRHPSGFLL-IAIALLLV  282 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-HHHHHHhhccchhHHH-HHHHHHHH
Confidence            666665555555555555567788888888889999999999999999999998 8889999999987654 44444444


Q ss_pred             HHHHh-HhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCC
Q 013707          326 NMFIC-SISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  403 (438)
Q Consensus       326 ~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~  403 (438)
                      +.... ...++.+..+. ..+.|++.....+...+.+.+..| ++++++.|+++...++|..+||.+.|.++|+.     
T Consensus       283 ~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~-----  356 (390)
T PRK03545        283 CLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL-----  356 (390)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence            44333 34444444444 566677776667777788888766 78899999999999999999999999999873     


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhhhh
Q 013707          404 PFNFPGFSIMCIGLASVRAFTYELLLSF  431 (438)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (438)
                         .....+.+.+++.+++.+...+..+
T Consensus       357 ---g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        357 ---GLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             ---ChhHHHHHHHHHHHHHHHHHHHHcc
Confidence               2334455555666666655554433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.3e-37  Score=269.76  Aligned_cols=369  Identities=14%  Similarity=0.115  Sum_probs=295.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhh----hhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcc
Q 013707            6 EIKTLSHLFVTVFLWGFATMMVV----PAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK   81 (438)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk   81 (438)
                      ++|....++++.++.+.++..+.    -+.|.+.+        +.++|..+.|++.+++.+.+.++..+.|.++||.+.|
T Consensus        23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e--------~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr   94 (448)
T COG2271          23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIE--------DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPR   94 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHH--------hcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Confidence            45556667777777777665543    45555543        5567889999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhH
Q 013707           82 AMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (438)
Q Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  161 (438)
                      +.+..++++.++..++++++++   ++.+.+..+++|+ .+|.-.|.+...++.|+|++|||+..++++++.++|..+.|
T Consensus        95 ~fm~~gLilsai~nil~Gfs~s---~~~~~~l~~lng~-fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~  170 (448)
T COG2271          95 YFMAFGLILSAIVNILFGFSPS---LFLFAVLWVLNGW-FQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAP  170 (448)
T ss_pred             eeehHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHH-HhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHH
Confidence            9999999999999999999999   9999999999999 89999999999999999999999999999999999999888


Q ss_pred             hhh--HHh----hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCcccccc-CCc
Q 013707          162 LAA--RFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKK-IPS  234 (438)
Q Consensus       162 ~l~--~~~----~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  234 (438)
                      ++.  +++    +||..|++.++++++..++.++..+|+|++..-+.     .++..    +++.+.. +++++++ ...
T Consensus       171 ~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~-----ie~~~----~d~~e~~-~~~~~~~~ls~  240 (448)
T COG2271         171 LVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP-----IEEYR----GDPLEIY-EEEKENEGLTA  240 (448)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC-----HHHhh----cCchhhh-hhhccCCCccH
Confidence            877  553    89999999999999999999999999988655431     00000    0000000 1111111 223


Q ss_pred             hhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ch
Q 013707          235 IRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GE  312 (438)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~  312 (438)
                      ++...+...+||.+|.+.+..++....-++++.+.|.|+.|..|+|..+++...+.+-.++++++ ++.|+++||+  ||
T Consensus       241 ~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~-Ll~GwlSDklfkgr  319 (448)
T COG2271         241 WQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGT-LLAGWLSDKLFKGR  319 (448)
T ss_pred             HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHH-HHHHHHHHHhcccc
Confidence            44456678899999999999999999999999999999999999999999999999999999999 8999999997  45


Q ss_pred             hhH-HHHHHHHHHHHHHHhHhcccc--hHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhh-hhhhh
Q 013707          313 AKL-LSLGLFAACINMFICSISWSA--WVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSF-ANIVS  387 (438)
Q Consensus       313 ~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~g  387 (438)
                      |.. .++.++...++...+...++.  +.... .+.+|+......-..-....|..|++..|++.|+...+.++ |.+.+
T Consensus       320 R~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a  399 (448)
T COG2271         320 RGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALA  399 (448)
T ss_pred             cchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhc
Confidence            544 445555666666666666654  22222 34455555555545556679999999999999999999999 88889


Q ss_pred             hHhHHHHHHH
Q 013707          388 PLIFSPLTAL  397 (438)
Q Consensus       388 ~~~~g~l~~~  397 (438)
                      ....|++.|.
T Consensus       400 ~~~~g~i~d~  409 (448)
T COG2271         400 GLPLGYIADT  409 (448)
T ss_pred             CCcceeeEec
Confidence            9888988886

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=1.5e-35  Score=279.77  Aligned_cols=349  Identities=15%  Similarity=0.138  Sum_probs=273.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHH
Q 013707           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (438)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~   89 (438)
                      ....+...+++.++.....+..|.+.+        +++.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   88 (406)
T PRK11551         17 IGLCFLVALLEGLDLQSAGVAAPRMAQ--------EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA   88 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence            344455666777777778888888765        456677889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH---
Q 013707           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---  166 (438)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~---  166 (438)
                      +..++.+++.++++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..+++.++..   
T Consensus        89 ~~~~~~~~~~~~~~---~~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  164 (406)
T PRK11551         89 LFGLFSLATAQAWD---FPSLLVARLLTGV-GLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG  164 (406)
T ss_pred             HHHHHHHHHHHhcc---HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999998   8999999999999 8888889999999999999999999999999999999999988765   


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhccc
Q 013707          167 -LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (438)
Q Consensus       167 -~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (438)
                       .+||..|++.+++.++..+.....+||++++.+++++                +      +  ++.+..+...+.. ++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------~------~--~~~~~~~~~~~~~-~~  219 (406)
T PRK11551        165 DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA----------------G------K--QRAPVLRALFGEG-RA  219 (406)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc----------------c------h--hhhhhHHHHhhhh-hh
Confidence             3799999998877666655566678887643222100                0      0  0000111111111 11


Q ss_pred             chhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 013707          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (438)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (438)
                      +..+......+...........+.|.|+++ .|+++.+.+.......++.++++ ++.+++.||+++|+.+..+.....+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~~~~~~~  297 (406)
T PRK11551        220 TATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGS-LLIGALMDRLRPRRVVLLIYAGILA  297 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            222233333344444555667788999987 69999999999999999999998 8889999999999988887777777


Q ss_pred             HHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          326 NMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       326 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      +++.+...++.+.... ..+.+++.....+...++..|.+|+++||++.|+.+....+|..++|.+.|.+.++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  370 (406)
T PRK11551        298 SLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL  370 (406)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc
Confidence            7666666665554444 45667777777888889999999999999999999999999999999999999886

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=4.8e-36  Score=279.22  Aligned_cols=349  Identities=15%  Similarity=0.153  Sum_probs=283.0

Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHH
Q 013707           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (438)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~   91 (438)
                      .++...++..++.++..+.+|.+..+        .+.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~   74 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVLA--------GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIR   74 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHH--------hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHH
Confidence            45678889999999999999998764        4566788999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhcc-----cchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH
Q 013707           92 IIPLAILAYRR-----SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (438)
Q Consensus        92 ~~~~~~~~~~~-----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (438)
                      .++..+..+.+     +   ++.+++.|+++|+ +.+...+...+++.|++|+++|++++++.+....+|.++||.+++.
T Consensus        75 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~  150 (365)
T TIGR00900        75 AVLVAVLPFVALLGGLN---IWQVYVLAGILAI-AQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL  150 (365)
T ss_pred             HHHHHHHHHHHHcCCCc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            88888888776     7   8999999999999 8899999999999999999999999999999999999999988876


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhh
Q 013707          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (438)
Q Consensus       167 ----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (438)
                          .+||+.|++.++..++..+... ..++++++++++++                       .+++..++.++..+..
T Consensus       151 l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~  206 (365)
T TIGR00900       151 MYATLGIKWAIWVDAVGFAISALLIV-SVRIPELAASEIQA-----------------------LSNAVLRDTREGIKFV  206 (365)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHH-hcccccCCCccccc-----------------------cchhHHHHHHhHHHHH
Confidence                4899999988776555443332 23222111111000                       0000001223334456


Q ss_pred             cccchhHHHHHHHHHHHhhhchhh-HHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 013707          243 RSSVTLSQAAVVAFFSGLSEGGMQ-ASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLF  321 (438)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  321 (438)
                      +++|.++...+..++......... .+.|.|.++.+|.++.+.+.......++..++. +..+++.||.++++.+..+..
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~  285 (365)
T TIGR00900       207 LKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGA-LLLGLLGRYFKRMALMTGAIF  285 (365)
T ss_pred             HcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhchhHHHHHHHH
Confidence            678888877777777776666665 788999988889999999999999999999988 778899999999998888877


Q ss_pred             HHHHHHHHhHhccc-chHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          322 AACINMFICSISWS-AWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       322 ~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      +.+++.....+.++ .+.... .++.+++.+...+...++..|.+|+++||++.|+.+...+++..++|.+.|.+.|.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       286 VIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777776654 444444 57778888888999999999999999999999999999999999999999999986

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=8.2e-36  Score=287.14  Aligned_cols=377  Identities=16%  Similarity=0.094  Sum_probs=297.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      +..+..+++..++..++..++...+|.+.+        |++.+..+.+|+.+.+.++...+.+++|+++||+|||++++.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~--------~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~   76 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSM--------TLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLML   76 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            446677888899999999999999999966        456666788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccC-CccchhHHHHHHHHHHHhhhhhhHhhhH
Q 013707           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAAR  165 (438)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l~~  165 (438)
                      +..+.+++++++++++|   ++.++++|+++|+ +.+...|.....+.+.+ |+++|++++|+......+|..+||.+++
T Consensus        77 ~~~~~~~~~~~~~~a~~---~~~li~~r~l~G~-g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg  152 (495)
T PRK14995         77 GGTLFGLASLAAAFSPT---ASWLIATRALLAI-GAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGG  152 (495)
T ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   9999999999999 88888888888887765 6799999999999999999999999998


Q ss_pred             Hh----hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhc---------cccccCCCCCCCC--------
Q 013707          166 FL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEE---------TEGVNQNESNSPV--------  224 (438)
Q Consensus       166 ~~----~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~--------  224 (438)
                      .+    +||+.|++...+.++..++..+.+||++++++++.|..+.....         .++..........        
T Consensus       153 ~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  232 (495)
T PRK14995        153 ILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTG  232 (495)
T ss_pred             HhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence            75    89999999988887777777778888654433333322211000         0000000000000        


Q ss_pred             -------CccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHH
Q 013707          225 -------KIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTI  297 (438)
Q Consensus       225 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  297 (438)
                             ...+.+.+++..+ .+ ++++|.+....+..++..........+.|.|+++.+|+|+.+.|.......++..+
T Consensus       233 ~~~l~~f~~~e~~~~~p~~~-~~-lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~  310 (495)
T PRK14995        233 ALLLGLFIRTQLAASRPMID-MR-LFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGF  310 (495)
T ss_pred             HHHHHHHHHHHhcCCCCCcC-HH-HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence                   0001111122222 12 45677777777777777777777888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhc---ccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHH
Q 013707          298 SQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS---WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQ  373 (438)
Q Consensus       298 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  373 (438)
                      +. ++.|++.||+|+|+.+..+..+..++...+...   ++.+..+. .++.|++.+...+.......+.+|+++++.+.
T Consensus       311 ~~-~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~  389 (495)
T PRK14995        311 SG-PIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAG  389 (495)
T ss_pred             HH-HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHH
Confidence            88 888999999999999888888887777665442   23333333 67778999988888888999999999999999


Q ss_pred             HHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          374 GCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       374 g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      ++.++.+++|+.+|+.+.|.+++..
T Consensus       390 ~~~~~~~~lG~~~G~ai~g~i~~~~  414 (495)
T PRK14995        390 AIETMAYELGAGLGIAIFGLLLSRS  414 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998763

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=100.00  E-value=3.6e-35  Score=275.14  Aligned_cols=367  Identities=14%  Similarity=0.094  Sum_probs=279.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHH
Q 013707           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (438)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~   90 (438)
                      +.++...++...+.+...|.+|.+..+       +.+.+..+.|++.+...++..+.+++.|+++||+|||+++..+..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~   85 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVD-------QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLM   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHH
Confidence            566788889999999999999998753       5577789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh---
Q 013707           91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---  167 (438)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~---  167 (438)
                      .+++.+.+.+.++   ++.+++.|+++|+ +.+...|...+++.|++|+|+|++++++.+...++|..+||.+++.+   
T Consensus        86 ~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~  161 (400)
T PRK11646         86 RAAGFATMAIAHE---PWLLWLSCILSGL-GGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQY  161 (400)
T ss_pred             HHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999988   8899999999999 78888889999999999999999999999999999999999998874   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccch
Q 013707          168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVT  247 (438)
Q Consensus       168 ~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (438)
                      +||+.|++.+...++..+...+..||.++++.+                                ++.++.++...++|.
T Consensus       162 g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~  209 (400)
T PRK11646        162 DFRLVCATGAVLFVLAAAFNAWLLPAYKLSTVR--------------------------------TPVREGMTRVLRDKR  209 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCcccccccc--------------------------------hhhHHHHHHHHcCch
Confidence            899999998877666655555555553211000                                011112223445565


Q ss_pred             hHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 013707          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (438)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (438)
                      ++...+..+...........+.|.|.++.. .++.+.+.+.+..++..........++..||.+.++.+..+..+.+++.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  288 (400)
T PRK11646        210 FVTYVLTLTGYYMLAVQVMLMLPIMVNDIA-GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSM  288 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            554444433333333334567899998864 4778888888887777766664555444456666666777777778877


Q ss_pred             HHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCCC
Q 013707          328 FICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFN  406 (438)
Q Consensus       328 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~  406 (438)
                      +.+...++.+.... ..+.+.+.+...|...++..+.+|+++||+++|+.+....+|..+||.+.|.++|+.++.+    
T Consensus       289 ~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~----  364 (400)
T PRK11646        289 FPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALN----  364 (400)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcC----
Confidence            77776666554443 4566777778888899999999999999999999999999999999999999999854322    


Q ss_pred             CCchHHHHHHHHHHHHHHH
Q 013707          407 FPGFSIMCIGLASVRAFTY  425 (438)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~  425 (438)
                      .....+...+++.++....
T Consensus       365 ~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        365 QPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             CcchHHHHHHHHHHHHHHH
Confidence            2233444444444444433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=2.3e-36  Score=284.36  Aligned_cols=377  Identities=12%  Similarity=0.072  Sum_probs=273.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      ++....+++..+++.++........|.+.+        |++.+..+.|++.+++.+++.+++++.|+++||+|||+++..
T Consensus         7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~--------~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~   78 (412)
T TIGR02332         7 RRLIIFLFILFIFSFLDRINIGFAGLTMGK--------DLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAG   78 (412)
T ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHhhHh--------hcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHH
Confidence            345566677777788888888888876533        667888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH
Q 013707           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (438)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (438)
                      +.++.+++.++++++++   ++.+++.|+++|+ +.+...|...+++.|++|+++|++++++++....+|..+++.++++
T Consensus        79 ~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~  154 (412)
T TIGR02332        79 IMVLWGIASTATMFATG---PESLYLLRILVGI-AEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGY  154 (412)
T ss_pred             HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHH-HHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   8999999999999 8888889999999999999999999999999999999999988765


Q ss_pred             ----------hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCC-CcccchhccccccCCCCCCCCCccccccCCch
Q 013707          167 ----------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDL-TRPIITEETEGVNQNESNSPVKIPVCKKIPSI  235 (438)
Q Consensus       167 ----------~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (438)
                                .+||+.|++.+++.++..++.++++||+|++.+...+ .++..++..+....+.++ +. +...+.....
T Consensus       155 l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~  232 (412)
T TIGR02332       155 ILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQ-PE-GAFAHAAMPQ  232 (412)
T ss_pred             HHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccc-cc-cccccccccH
Confidence                      3899999999888777666677788998764321000 000000000000000000 00 0000111111


Q ss_pred             hHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 013707          236 RDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ-FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (438)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  314 (438)
                      ++.++.++ ++.++...+..++.........+++|.|+++. .|.++.+.+.......++..++. ++.++++||+++|+
T Consensus       233 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~-l~~g~l~dr~~~r~  310 (412)
T TIGR02332       233 RSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGM-IWWSRHSDRLKERK  310 (412)
T ss_pred             HHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHH-HHHHHHhcccCccH
Confidence            22233344 35577777777777777888899999999873 46788888988999999999988 88899999998766


Q ss_pred             H-HHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHH
Q 013707          315 L-LSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFS  392 (438)
Q Consensus       315 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g  392 (438)
                      . .........++..+.....+....+. ..+.+++.....+.......+..|+++|+++.|+.+...++|++++|.+.|
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g  390 (412)
T TIGR02332       311 HHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIG  390 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence            4 33344444444333322222222222 222222332233444455567789999999999999999999999999999


Q ss_pred             HHHHHHh
Q 013707          393 PLTALFL  399 (438)
Q Consensus       393 ~l~~~~~  399 (438)
                      .+.|..+
T Consensus       391 ~i~~~~g  397 (412)
T TIGR02332       391 ILKDATG  397 (412)
T ss_pred             cccccCC
Confidence            9998743

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=5.7e-35  Score=277.14  Aligned_cols=389  Identities=12%  Similarity=0.060  Sum_probs=271.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHH
Q 013707           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (438)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~   89 (438)
                      ....++..+...++.....+.+|.+.+        +++.+..+.|++.+.+.++..+++++.|+++||+|||+++.++.+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~   96 (434)
T PRK11663         25 LITMYLGYALFYFTRKSFNAAMPEMLA--------DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLI   96 (434)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhhHHHHH--------hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHH
Confidence            334455555666666667778888865        557777889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH---
Q 013707           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---  166 (438)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~---  166 (438)
                      +.+++.++.+++++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+...++|..++|.+++.   
T Consensus        97 ~~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  172 (434)
T PRK11663         97 ATGIINILFGFSSS---LWAFALLWVLNAF-FQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL  172 (434)
T ss_pred             HHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999   8999999999999 7788888999999999999999999999999999999999988776   


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHH-hhcc
Q 013707          167 -LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC-LLRS  244 (438)
Q Consensus       167 -~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  244 (438)
                       ++||+.|++.+++.++..+...+.+||+|++...+.+.++.         ++ .++..++. .+...+.++.++ ...+
T Consensus       173 ~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~---------~~-~~~~~~~~-~~~~~~~~~~~~~~~~~  241 (434)
T PRK11663        173 HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWR---------HD-ALELAQQQ-EGAGLSRKEILTKYVLL  241 (434)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccc---------cc-ccccchhc-cccCCChhhhHHHHHhc
Confidence             48999999988876666555566778766433211100000         00 00000000 001112233222 2455


Q ss_pred             cchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--chhhHH-HH---
Q 013707          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEAKLL-SL---  318 (438)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~-~~---  318 (438)
                      ++.++...+..++.........+++|.|+++.+|+++.+.+...+...++..++. ++.|+++||+  ++|+.. ..   
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~-~~~g~l~dr~~~~~r~~~~~~~~~  320 (434)
T PRK11663        242 NPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGA-LVAGWGSDKLFNGNRGPMNLIFAA  320 (434)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH-HHHhhhHHHhccCCccHHHHHHHH
Confidence            6777777776666667777788899999988789999999999999999999998 8889999998  333222 22   


Q ss_pred             HHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          319 GLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      +.....+...... ..+...... ....+++.............|..|+++||++.|+.+...++|.+++|.+.|++.|+
T Consensus       321 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~  399 (434)
T PRK11663        321 GILLSVGSLWLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI  399 (434)
T ss_pred             HHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh
Confidence            1121222222111 122222212 22223322222223345668889999999999999999999999999999999997


Q ss_pred             HhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhh
Q 013707          398 FLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSF  431 (438)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (438)
                      .+        ....+...+++.+++.+..+...|
T Consensus       400 ~g--------~~~~f~~~~~~~~~~~~~~~~~~~  425 (434)
T PRK11663        400 WH--------WTGFFVVISIAAGISALLLLPFLN  425 (434)
T ss_pred             cc--------cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            32        222344444555444444444333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=100.00  E-value=8e-35  Score=271.92  Aligned_cols=371  Identities=14%  Similarity=0.084  Sum_probs=277.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcch
Q 013707            3 MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA   82 (438)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~   82 (438)
                      |++|+|+++.++.+.++..++.+...|.+|.+.+        +++.+..+.|++.+.+.++..+++++.|+++||+|||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~--------~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~   72 (381)
T PRK03633          1 MSTYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA--------QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR   72 (381)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            5678889999999999999999999999999976        44667788999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHh
Q 013707           83 MLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (438)
Q Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  162 (438)
                      ++..+.++.+++...++++++   ++.+++.|+++|+ +.+...|...+.+.|..++++|+++++..+...++|..+||.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  148 (381)
T PRK03633         73 SYYLASLIFAAGCAGLGLMVG---FWSWLAWRFVAGI-GCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQL  148 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999   9999999999999 888888888888889999999999999999999999999999


Q ss_pred             hhHHhhH---HHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHH
Q 013707          163 AARFLST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (438)
Q Consensus       163 l~~~~~w---~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (438)
                      +++.+..   +...+..+...... +.. .+.+.++++++++                             +..+.++  
T Consensus       149 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~-----------------------------~~~~~~~--  195 (381)
T PRK03633        149 LVSKVSTELMSVLPWVTGLVLAAI-LPL-LFTRILNQQAENH-----------------------------DSTSIWP--  195 (381)
T ss_pred             HHhcccccccchHHHHHHHHHHHH-HHH-HHhcccCCCCCCC-----------------------------CCCCHHH--
Confidence            9887521   22233322222111 111 1122211110000                             0011222  


Q ss_pred             HhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q 013707          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (438)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (438)
                        ..++|.++......+...........++|.|.++ .|.++.+.+...+...+..++++ +..+++.||+++|+.+..+
T Consensus       196 --~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~~~~~~l~~~  271 (381)
T PRK03633        196 --MLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQ-WPIGRLADRFGRLLVLRVQ  271 (381)
T ss_pred             --HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-hhhHHHHHHcCcHHHHHHH
Confidence              2334555544443444444555667788999987 59999999999998889999988 7789999999999998888


Q ss_pred             HHHHHHHHHHhHhcccchHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHh
Q 013707          320 LFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFL  399 (438)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  399 (438)
                      .....++.....  ..........+.+.+.....|...+.+.|..|+++++...+..+...++|..+||.+.|.+.|+.+
T Consensus       272 ~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g  349 (381)
T PRK03633        272 VFVVILGSIAML--SQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS  349 (381)
T ss_pred             HHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            777777665443  222222234555666667788899999999998888888888888899999999999999999742


Q ss_pred             cCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 013707          400 SKGAPFNFPGFSIMCIGLASVRAFTYELLLSFY  432 (438)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (438)
                              ....+.+.+.+.++..+..++.+++
T Consensus       350 --------~~~~f~~~~~~~l~~~~~~~~~~~~  374 (381)
T PRK03633        350 --------DNLLFIMIASVSFIYLLMLLRKAGH  374 (381)
T ss_pred             --------ccHHHHHHHHHHHHHHHHHHhccCC
Confidence                    2234445555555555444444443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=6.3e-35  Score=273.20  Aligned_cols=353  Identities=11%  Similarity=0.034  Sum_probs=263.8

Q ss_pred             hhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccc
Q 013707           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI  104 (438)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~  104 (438)
                      ....|.+|.+.+        |++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+.++++++ 
T Consensus        26 ~~~~~~lp~i~~--------~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~-   96 (393)
T PRK09705         26 TSVGPLLPQLRQ--------ASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQ-   96 (393)
T ss_pred             hccchhHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcc-
Confidence            556688888855        56778889999999999999999999999999999999999999999999999999999 


Q ss_pred             hhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh-----hHHHHHHHHHHH
Q 013707          105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIV  179 (438)
Q Consensus       105 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-----~w~~~f~~~~~~  179 (438)
                        ++.+++.|+++|+ +.+...+...+++.|++| ++|+++++.+..+...|..+|+.+++.+     +||..+.+.++.
T Consensus        97 --~~~ll~~r~l~Gi-g~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~  172 (393)
T PRK09705         97 --SALLLSSALLGGV-GIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALP  172 (393)
T ss_pred             --hHHHHHHHHHHHh-HHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence              8999999999999 888888889999999997 7899999999988888888777766652     799888766555


Q ss_pred             HHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHH
Q 013707          180 SMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSG  259 (438)
Q Consensus       180 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (438)
                      .++.. ..++...+++++++++                   +     +  .   +.++    ..+++..+...+..++..
T Consensus       173 ~~~~~-~~~~~~~~~~~~~~~~-------------------~-----~--~---~~~~----~l~~~~~~~l~~~~~~~~  218 (393)
T PRK09705        173 AVVAL-FAWWWQSAREVASSHK-------------------T-----T--T---TPVR----VVFTPRAWTLGVYFGLIN  218 (393)
T ss_pred             HHHHH-HHHHHHhcCCCccccC-------------------C-----C--c---CCcc----cccCHhHHHHHHHHHHHH
Confidence            44332 2222222211110000                   0     0  0   0011    123444555556666666


Q ss_pred             hhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHH
Q 013707          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVP  339 (438)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (438)
                      ..+.....+.|.|+++ +|.++.+.+...+..+++.++++ +..+++.||.++|+....+..+..++...+...++....
T Consensus       219 ~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~-~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  296 (393)
T PRK09705        219 GGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGA-LLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPV  296 (393)
T ss_pred             HHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHH-HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHH
Confidence            7777888999999987 79999999999999999999998 888999999999998888887777776655443332222


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHhhcCC-CCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCCCCCchHHHHHHHH
Q 013707          340 YATTAFSVLVVFATPSFRSIVSKQVG-PNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLA  418 (438)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  418 (438)
                      ....+.+++.+...|.......+..+ ++++|+..|+.+...+++..++|.+.|++.|..++       ....+.+.+++
T Consensus       297 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~-------~~~~~~~~~~~  369 (393)
T PRK09705        297 LWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGN-------YLMDWAFHALC  369 (393)
T ss_pred             HHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------chHHHHHHHHH
Confidence            22345567777777777666666664 57899999999999999999999999999998543       22334444444


Q ss_pred             HHHHHHHHHhhhhhh
Q 013707          419 SVRAFTYELLLSFYV  433 (438)
Q Consensus       419 ~~~~~~~~~~~~~~~  433 (438)
                      +++.........+++
T Consensus       370 ~~~~~~~~~~~~~~~  384 (393)
T PRK09705        370 VVGLMIITLRFAPAR  384 (393)
T ss_pred             HHHHHHHHHHhcccc
Confidence            444455444444443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=4.4e-35  Score=280.59  Aligned_cols=360  Identities=12%  Similarity=0.047  Sum_probs=261.6

Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHH
Q 013707           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII   93 (438)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~   93 (438)
                      ++..++.+++.....+..|.+.+        |++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.++
T Consensus        35 ~~~~~~~y~~r~~~~~~~~~i~~--------~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~  106 (467)
T PRK09556         35 FIGYLTMYLIRKNFKAAQNDMIS--------TYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI  106 (467)
T ss_pred             HHHHHHHHHHhcChhhhhHHHHH--------hcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence            34444555566777778887755        5677788999999999999999999999999999999999888888777


Q ss_pred             HHHHHHh-----cccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh-
Q 013707           94 PLAILAY-----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (438)
Q Consensus        94 ~~~~~~~-----~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-  167 (438)
                      ..+..++     +++   ++.+++.|+++|+ +.+...|...++++|++|+++|++++|+.+.+.++|.++++.++.+. 
T Consensus       107 ~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~  182 (467)
T PRK09556        107 CMLGFGASLGSGSVS---LGLMIALWALSGF-FQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA  182 (467)
T ss_pred             HHHHHHHHHhcccch---HHHHHHHHHHHHH-HHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence            7666554     577   8999999999999 88888899999999999999999999999999999999998876531 


Q ss_pred             ------hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhH-HHH
Q 013707          168 ------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD-LIC  240 (438)
Q Consensus       168 ------~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  240 (438)
                            +||..|.+.+++.++..+..++..+++|++.+..++.+    ...+. ..+  ++.  +.+ +++.+.++ ..+
T Consensus       183 ~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~----~~~~~-~~~--~~~--~~~-~~~~~~~~~~~~  252 (467)
T PRK09556        183 NYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEE----IFGEP-ISE--EDK--ETE-STDMTKWQIFVE  252 (467)
T ss_pred             HhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhh----cccCc-cch--hhh--ccc-cccCcHHHHHHH
Confidence                  48888888888777666666666677654332211100    00000 000  000  000 00111122 223


Q ss_pred             hhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHH
Q 013707          241 LLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGL  320 (438)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  320 (438)
                      ...++|.++...+..++..........+.|.|+++.+|+|+.+.+.......++..++. ++.|+++||+++|+......
T Consensus       253 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~-~~~G~lsDr~g~r~~~~~~~  331 (467)
T PRK09556        253 YVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGS-LLWGWLSDLANGRRALVACI  331 (467)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCchHHHHH
Confidence            35577888888888888777777888999999999899999999999888889999988 88999999999988766554


Q ss_pred             HHHHHHHHH--hHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhh-hhhhhhHhHHHHHH
Q 013707          321 FAACINMFI--CSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSF-ANIVSPLIFSPLTA  396 (438)
Q Consensus       321 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~g~~~~g~l~~  396 (438)
                      ....++...  +...++.+.... .++.|++.............|.+|++++|++.|+.+...++ |.+++|.+.|.+.|
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        332 ALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            443333222  222233333322 33444333222223345667999999999999999999997 77999999999999

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=4.1e-34  Score=267.42  Aligned_cols=330  Identities=12%  Similarity=0.131  Sum_probs=254.4

Q ss_pred             HHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHH
Q 013707           20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA   99 (438)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~   99 (438)
                      .........+.+|.+.+        +++.++.+.|+..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++.
T Consensus        32 ~~~~~~~~~~~l~~~~~--------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~  103 (394)
T PRK10213         32 LIIVEFLPVSLLTPMAQ--------DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVS  103 (394)
T ss_pred             HHHHHHHHHhhHHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHH
Confidence            33344455667777754        6677888999999999999999999999999999999999999999999999999


Q ss_pred             hcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH----hhHHHHHHH
Q 013707          100 YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQA  175 (438)
Q Consensus       100 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f~~  175 (438)
                      ++++   ++.+++.|+++|+ +.+...|...+++.|++|+|+|++++++.....++|..+||.+++.    ++||+.|++
T Consensus       104 ~~~~---~~~l~~~r~l~G~-~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~  179 (394)
T PRK10213        104 FANS---FSLLLIGRACLGL-ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA  179 (394)
T ss_pred             HHCh---HHHHHHHHHHHHH-hhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            9998   9999999999999 8888889999999999999999999999999999999999988876    489999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHH
Q 013707          176 ATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVA  255 (438)
Q Consensus       176 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (438)
                      .+++.++..+......||+++++++                                 ..++.. ...++|.++...+..
T Consensus       180 ~~~l~~~~~l~~~~~~p~~~~~~~~---------------------------------~~~~~~-~~l~~~~~~~~~~~~  225 (394)
T PRK10213        180 AAVMGVLCIFWIIKSLPSLPGEPSH---------------------------------QKQNTF-RLLQRPGVMAGMIAI  225 (394)
T ss_pred             HHHHHHHHHHHHHHHCCCCCccccc---------------------------------chhHHH-HHhcCHHHHHHHHHH
Confidence            8877665544444456664321100                                 001111 234566676665555


Q ss_pred             HHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhccc
Q 013707          256 FFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWS  335 (438)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (438)
                      ++..........+.++++.+++|+++.+.+......+++.+++. ++.+++.||.+++.............+++....++
T Consensus       226 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~-~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~  304 (394)
T PRK10213        226 FMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGT-SLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSD  304 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhh
Confidence            55555555556666444445579999999999999999999998 88899999965443344333334444444444455


Q ss_pred             chHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          336 AWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       336 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      .+.... ..+.|++.+...+...+.+++..| +++++..+......++|..+||.++|.++|.
T Consensus       305 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~  366 (394)
T PRK10213        305 KIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN  366 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            554444 567788888888999989998887 6677888888888999999999999999996

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=100.00  E-value=1.8e-34  Score=269.78  Aligned_cols=347  Identities=12%  Similarity=0.123  Sum_probs=260.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHH
Q 013707            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (438)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (438)
                      |+++.++++.++..++..+.....+...+        +.+.+..+.+++.+.+.+++.+++++.|+++||+|||++++.+
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~   74 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIALLK--------ELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIA   74 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHH
Confidence            35667888899999887777776666655        3344557789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh
Q 013707           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (438)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~  167 (438)
                      .++.+++.+.+.++++   .   ++.|+++|+ +.+...|+..+++.|++|+|+|++++++.+....+|.++||.+++.+
T Consensus        75 ~~~~~~~~~~~~~~~~---~---~~~r~l~G~-~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l  147 (393)
T PRK11195         75 NGIKLLGCLLMLFGIH---P---LLAYGLVGI-GAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL  147 (393)
T ss_pred             HHHHHHHHHHHHHHHH---H---HHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998888777766   3   678999999 89999999999999999999999999999999999999999999875


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcc
Q 013707          168 ---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS  244 (438)
Q Consensus       168 ---~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (438)
                         .|+..+.+.+...++. .+..+.+||++++++++++                       +..+...+.++..+.+++
T Consensus       148 ~~~~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~  203 (393)
T PRK11195        148 ADPHAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQSW-----------------------NPIALLRDFFHACRVLWR  203 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHhcCCCCcccccccCC-----------------------CHHHHHHHHHHHHHHHHh
Confidence               4555666555443333 3344667776533221100                       000000112222344566


Q ss_pred             cchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 013707          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (438)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  324 (438)
                      +|.++.......+............|.|+++.+|.++.+.|.+....+++.++++ +..+++.||.++++.+..+.. .+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~-~~~~~l~~~~~~~~~~~~g~~-~~  281 (393)
T PRK11195        204 DKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGA-GAAARLVTLETVLRVLPAGIL-MG  281 (393)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH-HHHHHHhcCCcccchHHHHHH-HH
Confidence            6766655555444455555666777889998899999999999999999999998 788899999888887777653 34


Q ss_pred             HHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCc-chhHHHHHhhHhhhhhhhhhHhHHHHH
Q 013707          325 INMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNE-QGKAQGCISGISSFANIVSPLIFSPLT  395 (438)
Q Consensus       325 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~~g~~~~g~l~  395 (438)
                      +....+.+.++.+.... ..+.|++.+...+..++..++..|+|. +|++.++.+..++++..++..+.+.+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        282 LVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            44444444444443333 457788888888888888888766554 799999999999999999999998664

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=4.4e-35  Score=275.86  Aligned_cols=358  Identities=17%  Similarity=0.148  Sum_probs=266.1

Q ss_pred             HHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHH
Q 013707           19 LWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAIL   98 (438)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~   98 (438)
                      +..++.....+..|.+.+        +++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++..++..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~--------~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   76 (399)
T TIGR00893         5 INYLDRANLSFAAPMLQE--------DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQ   76 (399)
T ss_pred             HHHHHHHhhhHhHHHHHH--------hhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHH
Confidence            445565666677777644        556777889999999999999999999999999999999999999999999999


Q ss_pred             HhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH----hhHHHHHH
Q 013707           99 AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQ  174 (438)
Q Consensus        99 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f~  174 (438)
                      +++++   ++.+++.|++.|+ +.+...+...+++.|++|+|+|++.+++.+...++|..+||.+++.    .+||+.|+
T Consensus        77 ~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  152 (399)
T TIGR00893        77 AFAGA---YVSLYILRVLLGA-AEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFI  152 (399)
T ss_pred             HHHcC---HHHHHHHHHHHHH-HHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHH
Confidence            99998   9999999999999 8888999999999999999999999999999999999999988876    38999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHH
Q 013707          175 AATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVV  254 (438)
Q Consensus       175 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (438)
                      +.+++.++..+...+..||++++++..++.++..   ..+ ... ++.+.+++..+....    .+...++|.++...+.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  223 (399)
T TIGR00893       153 IEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYI---VVG-GLL-AEQQGKGPSTPKKYQ----IKELLKDRRVWGLALG  223 (399)
T ss_pred             HHHHHHHHHHHHhhheecCCCCccccCCHHHHhh---cch-hhc-cccccccccCCCccc----hHHHhcCHHHHHHHHH
Confidence            9888877766666666777654332211100000   000 000 000000011111112    2234567778888888


Q ss_pred             HHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh--HHHH------HHHHHHHH
Q 013707          255 AFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK--LLSL------GLFAACIN  326 (438)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~------~~~~~~~~  326 (438)
                      .++..........+.|.|+++.+|.++.+.+.+.....++.+++. ++.+++.||+++|+  ....      +.....+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (399)
T TIGR00893       224 QFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGM-ILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLL  302 (399)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Confidence            888888888889999999999899999999999999999999988 88899999999885  1111      11111111


Q ss_pred             HHHhHhcccchHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          327 MFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      .......++.+........+.......+...++.+|..|+++||++.|+.+...++|..++|.+.|.+.|..
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~  374 (399)
T TIGR00893       303 MFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT  374 (399)
T ss_pred             HHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC
Confidence            111111122222222333333333368889999999999999999999999999999999999999998863

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=8.6e-34  Score=272.97  Aligned_cols=369  Identities=15%  Similarity=0.102  Sum_probs=256.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHH-HHHHHHHHHHHHhhhhcccccccCcchHhH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGF-QQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~-~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~   85 (438)
                      ++......++.+++.++..++....|.+.+++. ++.++. .+ ....+ +.++..++..+++++.|+++||+|||+++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~-~~~~~~-~~-~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~   91 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFF-PGADPS-VQ-MIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILA   91 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCcH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            445566678889999999998888887766542 222221 11 11122 357888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccchhH-----HHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhh
Q 013707           86 LPLTLSIIPLAILAYRRSISFF-----YAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG  160 (438)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  160 (438)
                      .+.++++++++++++++++..+     ..+++.|+++|+ +.|...+...+++.|++|+++|++..++.+.+..+|..+|
T Consensus        92 ~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~-g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg  170 (490)
T PRK10642         92 ITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGF-SVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLG  170 (490)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh-HhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999993211     148999999999 8899999999999999999999999999998888888777


Q ss_pred             HhhhH------------HhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccc
Q 013707          161 TLAAR------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPV  228 (438)
Q Consensus       161 ~~l~~------------~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (438)
                      +.+..            .+|||++|++.+++.++ .++....+||+|+..+++++.++       .  .  ++. .   .
T Consensus       171 ~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~-------~--~--~~~-~---~  234 (490)
T PRK10642        171 AGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQ-------G--D--REG-L---Q  234 (490)
T ss_pred             HHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhh-------h--c--ccc-c---c
Confidence            65432            24899999998766554 34445678887653221100000       0  0  000 0   0


Q ss_pred             cccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013707          229 CKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP  308 (438)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  308 (438)
                      +++..++++.++.  +++.+.......++....++....++|.|+++.+|++..+.+.......++..++. +..++++|
T Consensus       235 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~d  311 (490)
T PRK10642        235 DGPKVSFKEIATK--HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQ-PVMGLLSD  311 (490)
T ss_pred             ccccCCHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            0111234443221  11222222233344556677788899999988889998887777777777777877 78899999


Q ss_pred             hhchhhHHHHHHHHHHHHH-HHhHh--cccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhh
Q 013707          309 ILGEAKLLSLGLFAACINM-FICSI--SWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFAN  384 (438)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  384 (438)
                      |+|||+.+..+.+...++. ..+..  ..+....+. ..+.+++.+........+..+.+|++.||++.|.......+++
T Consensus       312 r~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g  391 (490)
T PRK10642        312 RFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVA  391 (490)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHH
Confidence            9999998877765433322 21222  222333333 3445565566666677788899999999999998666677778


Q ss_pred             hhhhHhHHHHHHHH
Q 013707          385 IVSPLIFSPLTALF  398 (438)
Q Consensus       385 ~~g~~~~g~l~~~~  398 (438)
                      .++|.+.+++.+..
T Consensus       392 ~~~p~i~g~l~~~~  405 (490)
T PRK10642        392 GLTPTLAAWLVEST  405 (490)
T ss_pred             HHHHHHHHHHHHHh
Confidence            89999999998753

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1.4e-34  Score=283.38  Aligned_cols=394  Identities=15%  Similarity=0.139  Sum_probs=282.0

Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHH
Q 013707           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (438)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~   92 (438)
                      +.++.+...+....+.+++|.+..        +++++..+.+++.+++.++.+++++++|+++||+|||+.++++.++.+
T Consensus       172 ~~l~~~~~g~d~~~is~ilp~i~~--------~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~  243 (742)
T TIGR01299       172 LGLALMADGVEVFVVGFVLPSAEK--------DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNG  243 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            334444555556667778887755        456667788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH------
Q 013707           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF------  166 (438)
Q Consensus        93 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~------  166 (438)
                      ++.++++++++   ++.++++|++.|+ +.+...|...+++.|++|+++|++.+++++....+|.++++.++..      
T Consensus       244 i~~ll~afa~s---~~~llv~R~l~G~-g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G  319 (742)
T TIGR01299       244 FFAFFSSFVQG---YGFFLFCRLLSGF-GIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG  319 (742)
T ss_pred             HHHHHHHHHhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999   9999999999999 8888889999999999999999999999999999999998876533      


Q ss_pred             -----------hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC---CCCcccchhccccccCC--------------
Q 013707          167 -----------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDD---DLTRPIITEETEGVNQN--------------  218 (438)
Q Consensus       167 -----------~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------------  218 (438)
                                 .+||+.+++.++..++. ++..+++||+|+....+   +++.+..++..+.+...              
T Consensus       320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~  398 (742)
T TIGR01299       320 WSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIK  398 (742)
T ss_pred             chhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHH
Confidence                       25899998887765444 55667899998753222   22222222211111000              


Q ss_pred             ----CC---CCCCCccc-c-----ccCC---chhHHHHhhcccc---hhHHHHHHHHHHHhhhchhhHHHHHHHHhH---
Q 013707          219 ----ES---NSPVKIPV-C-----KKIP---SIRDLICLLRSSV---TLSQAAVVAFFSGLSEGGMQASFLYFLKAQ---  276 (438)
Q Consensus       219 ----~~---~~~~~~~~-~-----~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  276 (438)
                          .+   +.+..... .     +...   .....++.+++++   ..+.+.+..++..+.+++...++|..+++.   
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~  478 (742)
T TIGR01299       399 TIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQAD  478 (742)
T ss_pred             HhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                00   00000000 0     0000   0000122233332   334555666777788889999999875441   


Q ss_pred             -c-------------------------------------CC-----C---------------------------------
Q 013707          277 -F-------------------------------------HF-----N---------------------------------  280 (438)
Q Consensus       277 -~-------------------------------------g~-----~---------------------------------  280 (438)
                       +                                     |+     +                                 
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  558 (742)
T TIGR01299       479 DYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFEN  558 (742)
T ss_pred             HHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccc
Confidence             0                                     00     0                                 


Q ss_pred             -----------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 013707          281 -----------------------------------KNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (438)
Q Consensus       281 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (438)
                                                         ...........+++.+++. ++.++++||+|||+++..+.++.++
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~-il~g~L~Dr~GRr~~l~~~~~lsai  637 (742)
T TIGR01299       559 TDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGN-IVSALLMDKIGRLRMLAGSMVLSCI  637 (742)
T ss_pred             cchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                                               0011233445567777777 8889999999999999999999999


Q ss_pred             HHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCC
Q 013707          326 NMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAP  404 (438)
Q Consensus       326 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~  404 (438)
                      +.+++++.++....++ .++.+++.+...+...++++|.+|++.|++++|+.+....+|.+++|.+++.+.+.       
T Consensus       638 ~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-------  710 (742)
T TIGR01299       638 SCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-------  710 (742)
T ss_pred             HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence            9888887766554444 45667777778888999999999999999999999999999999999999988875       


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHhh
Q 013707          405 FNFPGFSIMCIGLASVRAFTYELLL  429 (438)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~  429 (438)
                        ....++.+.+++.+++.++..++
T Consensus       711 --~~~~pf~i~a~~lll~~ll~~~L  733 (742)
T TIGR01299       711 --TKAAPILFASAALACGGLLALKL  733 (742)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHhC
Confidence              23345666666666666655555

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=3.6e-34  Score=269.57  Aligned_cols=373  Identities=12%  Similarity=0.104  Sum_probs=274.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHh
Q 013707            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (438)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l   84 (438)
                      ++++.+..+.+..++..++.++..|.+|.+.++       +++.+..+.|++.+++.++..+++++.|+++||+|||+++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~-------~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l   84 (399)
T PRK05122         12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHD-------QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV   84 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH
Confidence            456788889999999999999999999988654       5567778899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc---ccc--hhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhh
Q 013707           85 TLPLTLSIIPLAILAYR---RSI--SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC  159 (438)
Q Consensus        85 ~~~~~~~~~~~~~~~~~---~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  159 (438)
                      ..+.++.+++.+.+.++   ++.  ..++.+++.|+++|+ +.+...+...+++.|+.|+|+|++++++.+....+|.++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  163 (399)
T PRK05122         85 VFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGI-GESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAI  163 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHh-hHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHH
Confidence            99999888776665543   221  126789999999999 888888899999999999999999999999999999999


Q ss_pred             hHhhhHH----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCch
Q 013707          160 GTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSI  235 (438)
Q Consensus       160 g~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (438)
                      ||.+++.    ++|+..+++..++.++..+ .   .++.++++.++                         +   ++.+.
T Consensus       164 g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~-------------------------~---~~~~~  211 (399)
T PRK05122        164 GAPLGVLLYHWGGLAGLGLLIMLLALLGLL-L---ARPRPAVPPVK-------------------------G---ERLPF  211 (399)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHH-H---HhcCCCCCCCC-------------------------c---cchhH
Confidence            8888776    4899888876655433221 1   22211111000                         0   00112


Q ss_pred             hHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 013707          236 RDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (438)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  315 (438)
                      ++..+.      .+.......+..+.+.....+.|.|.++ .|++  +.+.......++.+++. +..+++.||+++|+.
T Consensus       212 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~  281 (399)
T PRK05122        212 RRVLGR------VWPYGMGLALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGAR-LLFGNLINRLGGLRV  281 (399)
T ss_pred             HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHH-HHHHHHHHHhccHHH
Confidence            221111      1111222233344455566778888876 4663  34556667777888887 788899999999999


Q ss_pred             HHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHH
Q 013707          316 LSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  394 (438)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l  394 (438)
                      +..+..+..++.......++.+.... ..+.|++.+...+.......+..|+++||++.|+++....+|..++|.+.|.+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  361 (399)
T PRK05122        282 AIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLV  361 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888877777666555444 56778888888888888888899999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhcc
Q 013707          395 TALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSFYVFS  435 (438)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (438)
                      .+..+        ....+.+.+++.+++.+.....+++..+
T Consensus       362 ~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (399)
T PRK05122        362 ASWFG--------YPSIFLAAALAALLGLALTWLLYRRAPR  394 (399)
T ss_pred             HHHcC--------HHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            88632        2234445555556666555555554433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=100.00  E-value=1.2e-33  Score=267.21  Aligned_cols=378  Identities=16%  Similarity=0.175  Sum_probs=284.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHh
Q 013707            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (438)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l   84 (438)
                      +|+|....++++.++..++.++..|.+|.+.++.   +.++.+....+.|++.+++.++..+++++.|+++||+|||+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~   87 (408)
T PRK09874         11 NWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQL---GVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIML   87 (408)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh---CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHH
Confidence            4677888888999999999999999999998764   2222222234569999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhh
Q 013707           85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (438)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  164 (438)
                      ..+.+..+++.+++.+.++   ++.+++.|++.|+ +.+ ..+...+++.|..|+++|++++++......+|..++|.++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  162 (408)
T PRK09874         88 LRSALGMGIVMVLMGLAQN---IWQFLILRALLGL-LGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAG  162 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH-hhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888888   8999999999999 655 4577888999999999999999999999999999999888


Q ss_pred             HH----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHH
Q 013707          165 RF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (438)
Q Consensus       165 ~~----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (438)
                      +.    .+||+.|++.+++.++..+...+.+||++++.+++                             +..+.++..+
T Consensus       163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~  213 (408)
T PRK09874        163 GLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK-----------------------------EMLHMREVVT  213 (408)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccch-----------------------------hhhHHHHHHH
Confidence            76    48999999998887776666666777754322111                             0001223333


Q ss_pred             hhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q 013707          241 LLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKN---QFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS  317 (438)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  317 (438)
                      .+++++..+......+...........+++.|..+..+....   ..+.+....+++..++. +..+++.||+++|+.+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~-~~~g~l~dr~g~~~~~~  292 (408)
T PRK09874        214 SLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSA-PRLGKLGDRIGPEKILI  292 (408)
T ss_pred             hCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchhHH
Confidence            343333333333334444445555667788888775332221   23455556667777777 77789999999999998


Q ss_pred             HHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          318 LGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      .+.....++.+...+.++.+.... ..+.+++.+...|...+...+..|++++|+.++..+....+|..+||.+.|.+.+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~  372 (408)
T PRK09874        293 TALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA  372 (408)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh
Confidence            888887777776666666555544 5677888888899999999999999999999999999999999999999999988


Q ss_pred             HHhcCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 013707          397 LFLSKGAPFNFPGFSIMCIGLASVRAFTYELL  428 (438)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (438)
                      ..        .....+...+++.+++.+..++
T Consensus       373 ~~--------g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        373 NY--------GFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             hc--------chhHHHHHHHHHHHHHHHHHHH
Confidence            63        2233455555555555555544

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=1e-33  Score=268.60  Aligned_cols=388  Identities=13%  Similarity=0.102  Sum_probs=262.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhH
Q 013707            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (438)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~   85 (438)
                      ++|.....+++.+++.++........|.+..+...++.++. ..........++..+++.+++++.|+++||+|||+++.
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~   98 (438)
T PRK09952         20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence            34556666778888999988888777766554322222221 11111122335566788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccchhHH--------HHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhh
Q 013707           86 LPLTLSIIPLAILAYRRSISFFY--------AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASF  157 (438)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  157 (438)
                      .+.+++++++++++++++   +.        .+++.|+++|+ +.+...+....++.|++|+++|++..+..+.+..+|.
T Consensus        99 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~  174 (438)
T PRK09952         99 LTVWMMGIATALIGLLPS---FSTIGWWAPVLLVTLRAIQGF-AVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGL  174 (438)
T ss_pred             HHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHHHHh-hhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence            999999999999999999   54        58899999999 8899889999999999999999999999999999998


Q ss_pred             hhhHhhhH------------HhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCC
Q 013707          158 VCGTLAAR------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVK  225 (438)
Q Consensus       158 ~~g~~l~~------------~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (438)
                      ++++.+..            .++||.+|++.+++.++. +......||+++..+++++             .+  +    
T Consensus       175 ~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~~~-------------~~--~----  234 (438)
T PRK09952        175 LLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQHE-------------QA--A----  234 (438)
T ss_pred             HHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHHhh-------------cc--c----
Confidence            88865443            258999999887765432 3333445665432111100             00  0    


Q ss_pred             ccccccCCchhHHHHhhcccchhHHH-HHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 013707          226 IPVCKKIPSIRDLICLLRSSVTLSQA-AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMP  304 (438)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (438)
                       .  +++.+..   +.++++|..+.. ....++..+..+....+.|.|.++.+|+++..........+....++. ++.|
T Consensus       235 -~--~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~-~~~g  307 (438)
T PRK09952        235 -A--KKRIPVI---EALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTI-PCFA  307 (438)
T ss_pred             -c--cccCCHH---HHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHH
Confidence             0  0000111   113334444433 334445555666778899999988889988766555555666667776 7889


Q ss_pred             HHHHhhchhhHHHHHHHHHHHHHHHhHh---ccc-chHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhH
Q 013707          305 LLAPILGEAKLLSLGLFAACINMFICSI---SWS-AWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGI  379 (438)
Q Consensus       305 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  379 (438)
                      +++||++||+.+..+.++..++...+..   ..+ .+.... ..+.+++.+...+..+++..|.+|++.|+++.|+.+..
T Consensus       308 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~  387 (438)
T PRK09952        308 WLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQV  387 (438)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHH
Confidence            9999999999888776665554433222   122 222222 34446667777788889999999999999999986655


Q ss_pred             h-hhhhhhhhHhHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhh
Q 013707          380 S-SFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSF  431 (438)
Q Consensus       380 ~-~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (438)
                      . .+++.++|.+.+++.+...+.     + ...+...+++.+++.+..+..++
T Consensus       388 ~~~lgg~~~p~i~g~l~~~~~~~-----~-~~~~~~~~~~~~i~~v~~~~~~~  434 (438)
T PRK09952        388 ASVVGGGFTPFIAAALVTYFGGS-----W-HSVAIYLLAGCLISAMTALLMKD  434 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCC-----c-hHHHHHHHHHHHHHHHHHHHccc
Confidence            4 589999999999998863211     1 12333444455555555554443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=2.2e-34  Score=272.38  Aligned_cols=350  Identities=14%  Similarity=0.121  Sum_probs=275.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      +|.+..++...++..++.++..+.+|.+.++.        +.+..+.|++.+.+.++..+++++.|+++||+|||+++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~   87 (417)
T PRK10489         16 HPAFRAVFIARFISIFGLGLLGVAVPVQIQMM--------TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILL   87 (417)
T ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEe
Confidence            35566677788899999999999999997743        4456788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh-----cccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhH
Q 013707           87 PLTLSIIPLAILAY-----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (438)
Q Consensus        87 ~~~~~~~~~~~~~~-----~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  161 (438)
                      +..+.+++....+.     .++   ++.+++.|+++|+ +.+...+...+++.|+.|+++|+++.++.+...++|..+||
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  163 (417)
T PRK10489         88 ARGTCGLGFIGLALNAFLPEPS---LLAIYLLGLWDGF-FGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISP  163 (417)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHH-HHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHH
Confidence            88877776655442     345   7888999999999 77888888899999999999999999999999999999999


Q ss_pred             hhhHHh----hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhH
Q 013707          162 LAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (438)
Q Consensus       162 ~l~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (438)
                      .+++.+    +|++.|++.++..++.. +..+.+||++++++++                           ++..++.++
T Consensus       164 ~l~g~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~---------------------------~~~~~~~~~  215 (417)
T PRK10489        164 ALGGLLIAAGGVAWNYGLAAAGTFITL-LPLLRLPALPPPPQPR---------------------------EHPLRSLLA  215 (417)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHhCCCCCCCCccc---------------------------ccchHHHHH
Confidence            988763    79999998877765543 3445667654322110                           000112233


Q ss_pred             HHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q 013707          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS  317 (438)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  317 (438)
                      ..+..+++|.++...+..++... ......++|.|.++.+|.++.+.+.+.+...++.+++. ++.+++.||.++++.+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~-~~~~~l~~~~~~~~~l~  293 (417)
T PRK10489        216 GFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGA-LTSGWLAHSARPGLLML  293 (417)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHH-HHHHHhhhccCcchHHH
Confidence            34445667766655555444333 34567788999998889999999999999999999988 78889999877777888


Q ss_pred             HHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          318 LGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      .+..+..++.+.+.+.++.+.... ..+.+++.+...+...+++++..|++.||+++|+++...++|..+||.+.|.+.+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~  373 (417)
T PRK10489        294 LSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA  373 (417)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence            888888887777766665544333 5666777777778888899999999999999999999999999999999999999


Q ss_pred             HH
Q 013707          397 LF  398 (438)
Q Consensus       397 ~~  398 (438)
                      ..
T Consensus       374 ~~  375 (417)
T PRK10489        374 MM  375 (417)
T ss_pred             Hh
Confidence            74

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=9.5e-34  Score=264.64  Aligned_cols=342  Identities=13%  Similarity=0.164  Sum_probs=262.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHH
Q 013707            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (438)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (438)
                      +.++.+.+..+....+.....|.+|.+.+        |++.+..+.|++.+.+.++..+++++.|+++||+|||+++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~   74 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAH--------DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFL   74 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHH--------HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHH
Confidence            45667788888888888999999999865        5566778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH-
Q 013707           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-  166 (438)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-  166 (438)
                      ..+.+++.++++++++   ++.+++.|+++|+ +.+...+....++.|+.|+++|+++++....+..+|..+||.+++. 
T Consensus        75 ~~~~~~~~~l~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l  150 (382)
T PRK10091         75 VALCVIGNAMFTLSSS---YLMLAIGRLVSGF-PHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYL  150 (382)
T ss_pred             HHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence            9999999999999999   9999999999999 8888888888999999999999999999999999999999888766 


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhc
Q 013707          167 ---LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR  243 (438)
Q Consensus       167 ---~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (438)
                         .+||+.|++.+++.++..+...+.+||.+++++.                                 +.++..+.+ 
T Consensus       151 ~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~---------------------------------~~~~~~~~~-  196 (382)
T PRK10091        151 SQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAKG---------------------------------GLREQFHFL-  196 (382)
T ss_pred             hhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc---------------------------------CHHHHHHHh-
Confidence               3899999999888776666556667775321110                                 001112223 


Q ss_pred             ccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 013707          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (438)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (438)
                      +++..+......++..........+.++|+++.+|+++.+.+.+.+..+++.++++ ++.+++.||+++++.+..+..+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~~r~~~~~~~~~~~~~~  275 (382)
T PRK10091        197 RSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGN-LLSGRLSGRYSPLRIAAVTDFII  275 (382)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh-HHHheeccccCchhHHHHHHHHH
Confidence            34444444444444434444455677888888789999999999999999999999 88899999999999988888888


Q ss_pred             HHHHHHhHh-cccchHHHH-HHHHHhhhhhhHHHHH-HHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          324 CINMFICSI-SWSAWVPYA-TTAFSVLVVFATPSFR-SIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       324 ~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      +++.+.+.. .++.+.... ..+.+.+.....+... ....+..|++.++.+.  .+....+|.++||.+.|.++|..
T Consensus       276 ~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~  351 (382)
T PRK10091        276 VLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLG  351 (382)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcc
Confidence            877765544 333333332 3344444443344333 3444444555555543  46778999999999999999963

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=3.5e-34  Score=263.94  Aligned_cols=330  Identities=13%  Similarity=0.042  Sum_probs=247.3

Q ss_pred             HHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHH
Q 013707           19 LWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAIL   98 (438)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~   98 (438)
                      .+......+.|.+|.+.+        |++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+....
T Consensus         2 ~~~~~~~~~~~~lp~i~~--------~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~   73 (368)
T TIGR00903         2 ASQAIWVTFSPVLSLVAE--------DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRL   73 (368)
T ss_pred             hhhHHHHHHHhhHHHHHH--------HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence            345667788899999966        567778899999999999999999999999999999998776655554443323


Q ss_pred             HhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh----hHHHHHH
Q 013707           99 AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQ  174 (438)
Q Consensus        99 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~  174 (438)
                      ...++   ++.+++.|+++|+ +.+.. +.....++|++|+|+|++++++.+.+..+|.++++.++..+    +||+.|+
T Consensus        74 ~~~~~---~~~l~~~R~l~G~-g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~  148 (368)
T TIGR00903        74 LDPFN---YEWLLACQLLAAL-GQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLII  148 (368)
T ss_pred             HHhcc---HHHHHHHHHHHHh-HhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            33367   8999999999999 77764 56667779999999999999999999999999998888774    9999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHH
Q 013707          175 AATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVV  254 (438)
Q Consensus       175 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (438)
                      +.++++++..++.++.+||+|++++++               .        +. .   +..++ ++.+.++|.++...+.
T Consensus       149 ~~~~l~~~~~~~~~~~lp~~p~~~~~~---------------~--------~~-~---~~~~~-~~~ll~~~~~~~~~~~  200 (368)
T TIGR00903       149 PIAAVAAAGIILVLAALPALPFQAAEG---------------F--------GF-K---DAVKE-FGALAGRKDLWIIGAI  200 (368)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCCC---------------c--------ch-H---HHHHH-HHHHHcChhHHHHHHH
Confidence            988888777777778899976543211               0        00 0   01112 2335567888999889


Q ss_pred             HHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhch---hhH-HHHHHHHHHHHHHHh
Q 013707          255 AFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE---AKL-LSLGLFAACINMFIC  330 (438)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-~~~~~~~~~~~~~~~  330 (438)
                      .++....++...+++|.|+++ .|++.. .+.......+.+.++.    ++++||.+|   |+. ......+.++.....
T Consensus       201 ~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g~----~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~  274 (368)
T TIGR00903       201 LGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIGV----AVIPDRVARAGLRSIYIRAAALLIAAFFLAL  274 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHHH----HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999977 688865 5665555555555544    566666543   333 322344444444444


Q ss_pred             HhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHH
Q 013707          331 SISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  395 (438)
Q Consensus       331 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  395 (438)
                      ....+.+.... ..+.+++.....+..+++.+|.+|++.||++.|+.+...++++..+|.+.+.+.
T Consensus       275 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       275 AFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             HHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence            54444433333 444556666677778899999999999999999999999999999999998877

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=1.2e-34  Score=273.69  Aligned_cols=373  Identities=14%  Similarity=0.148  Sum_probs=272.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      .+.+...++..+.+.++..+..+..|.+.+        +++.+..+.|++.+.+.++..+++++.|.++||+|||+++..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~   82 (405)
T TIGR00891        11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAG--------EFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVT   82 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            345667788888999999999999998865        556777889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH
Q 013707           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (438)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (438)
                      +.++.+++.+++.++++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|.++++.+++.
T Consensus        83 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~  158 (405)
T TIGR00891        83 SIVLFSAGTLACGFAPG---YITMFIARLVIGI-GMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSL  158 (405)
T ss_pred             HHHHHHHHHHHHHHhcc---HHHHHHHHHHHHh-hhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   9999999999999 8888889999999999999999999999999999999999988776


Q ss_pred             h----h--HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHH
Q 013707          167 L----S--TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (438)
Q Consensus       167 ~----~--w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (438)
                      +    +  ||+.|++.++..++. +.....+||+++.++++++.++..+..++... ++   +..+..  .++......+
T Consensus       159 l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~--~~~~~~~~~~  231 (405)
T TIGR00891       159 VVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAEDWKEKHAGKALVRTMVDILYG-GE---HRIANI--VMTLAAAMVQ  231 (405)
T ss_pred             HHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHhhhhhhhhhHHHHHhc-cc---hhhhhh--hhhhhHHhhh
Confidence            3    4  999998876554433 34445677765432211110000000000000 00   000000  0000001011


Q ss_pred             hhcc-cchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q 013707          241 LLRS-SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (438)
Q Consensus       241 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (438)
                      ...+ .+.+........+..........++|.|+++.+|+++.+.+.+.....++.+++. ++.+++.||+++|+.+..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~-~~~g~l~dr~g~~~~~~~~  310 (405)
T TIGR00891       232 SAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGG-CVFGFLGDWLGRRKAYVCS  310 (405)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCchhhhHHH
Confidence            1111 1112222333333344445666788999988899999999999999999999988 8889999999999988877


Q ss_pred             HHHHHHHHH-HhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          320 LFAACINMF-ICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       320 ~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      .....+... .....++.+.... ..+.++......+....+++|.+|+++||++.|+.+...+++..++|.+.|.+.|+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~  390 (405)
T TIGR00891       311 LLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR  390 (405)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            766533332 2233334333333 35556666666777788899999999999999999999999999999999999998


Q ss_pred             Hh
Q 013707          398 FL  399 (438)
Q Consensus       398 ~~  399 (438)
                      .+
T Consensus       391 ~g  392 (405)
T TIGR00891       391 LD  392 (405)
T ss_pred             cc
Confidence            54

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=1.6e-33  Score=264.27  Aligned_cols=347  Identities=12%  Similarity=0.089  Sum_probs=269.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHh
Q 013707            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (438)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l   84 (438)
                      |++|..+..++..++.........+.+|.+.+        +++.+..+.|++.+.+.++..+++++.|++.||+|||+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~--------~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~   75 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAE--------YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQL   75 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            44556666677777777777788888888865        5567778899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhh
Q 013707           85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (438)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  164 (438)
                      ..+.++.+++.++++++++   ++.+++.|+++|+ +.+...+...+++.|++|+++|+++++..+....+|..++|.+.
T Consensus        76 ~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~G~-~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  151 (394)
T PRK03699         76 IFGFALMILAVAGLMFSHS---LALFSIAMFVLGV-VSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIA  151 (394)
T ss_pred             HHHHHHHHHHHHHHHHcch---HHHHHHHHHHHHH-hhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988   8999999999999 88888888999999999999999999998888888888888776


Q ss_pred             HH-----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHH
Q 013707          165 RF-----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (438)
Q Consensus       165 ~~-----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (438)
                      +.     .+||+.|.+.+++.++..++.++  ++.|+.+++++              +  ++    ++      ..++  
T Consensus       152 ~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~~~~~~--------------~--~~----~~------~~~~--  201 (394)
T PRK03699        152 AYLLARSIEWYWVYACIGLVYVAIFILTLF--SEFPALGKHAP--------------K--AD----KP------VAKE--  201 (394)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHHHHh--cCCccccccCc--------------c--cc----Cc------cccc--
Confidence            54     48999999888776555433322  22222111100              0  00    00      0000  


Q ss_pred             HhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q 013707          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (438)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (438)
                        . .++.++...+..++..........+.|.|+++.+|+|+.+.+.+.+...++..++. ++.++++||+++|+.+...
T Consensus       202 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~l~~~  277 (394)
T PRK03699        202 --K-WGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGM-WIFSFIVRFFDLQRILTVL  277 (394)
T ss_pred             --c-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHH-HHHHHHHHHhchhhHHHHH
Confidence              0 12345555556666666677788999999998899999999999999999999988 8889999999999988877


Q ss_pred             HHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          320 LFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      ..+..+...++...++.+.... .++.|++.+...+...+...+..| +++++..|......++|..++|.+.|++.|..
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~  356 (394)
T PRK03699        278 AGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHF  356 (394)
T ss_pred             HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence            7777776666655555544333 566777777777887878777766 55678889999999999999999999999974

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=9.6e-34  Score=264.76  Aligned_cols=362  Identities=14%  Similarity=0.101  Sum_probs=270.3

Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH-HHHHHH
Q 013707           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL-PLTLSI   92 (438)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~-~~~~~~   92 (438)
                      .+..++..++.++..|.+|.+.++       +++.+..+.|++.+.+.+...+.+++.|+++||+||||.++. +.....
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~-------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~   75 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSE-------EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAA   75 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHc-------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            455778889999999999998653       567778899999999999999999999999999999887654 556666


Q ss_pred             HHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHH--HHHHHHHHHhhhhhhHhhhHH----
Q 013707           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASA--FGILLGVLSASFVCGTLAARF----  166 (438)
Q Consensus        93 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~l~~~----  166 (438)
                      ++.++++++++   ++.+++.|++.|. ..+...|...++..|+.|+++|++.  .+......++|..+||.+++.    
T Consensus        76 ~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~  151 (375)
T TIGR00899        76 LACLLFAWNRN---YFLLLVLGVLLSS-FASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG  151 (375)
T ss_pred             HHHHHHHhcch---HHHHHHHHHHHHh-hhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh
Confidence            77788888888   8888899999988 6677788889999999887777654  577888888999999888775    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccc
Q 013707          167 LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSV  246 (438)
Q Consensus       167 ~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (438)
                      ++||+.|++.++..++..+..++.+||+++++++++                            ...+.++    ..++|
T Consensus       152 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~----~~~~~  199 (375)
T TIGR00899       152 FGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL----------------------------TRLEVRG----LLASR  199 (375)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc----------------------------Ccchhhh----hhcCc
Confidence            489999999988877776666677888654322110                            0001111    23345


Q ss_pred             hhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 013707          247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACIN  326 (438)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  326 (438)
                      .++......++............|.|+++.+|.++.+.+.+.........++. +..+++.||+++|+.+..+.....+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~~  278 (375)
T TIGR00899       200 DTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFM-LLAGYLIKRFGKRRLMLLAALAGVAF  278 (375)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhcchhHHHHHHHHHHHH
Confidence            45544444444444445556778999988899999999988877766667766 78899999999999888777766666


Q ss_pred             HHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCC
Q 013707          327 MFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPF  405 (438)
Q Consensus       327 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~  405 (438)
                      .......++.+.... ..+.+++.+...+....+.+|..| ++++++.|+.+...++|..++|.+.|.+.|..+      
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g------  351 (375)
T TIGR00899       279 YTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGILAERWS------  351 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence            555555555554444 456677777778888888888887 466799999999999999999999999988632      


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHh
Q 013707          406 NFPGFSIMCIGLASVRAFTYELL  428 (438)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~  428 (438)
                        ....+...+++.+++.....+
T Consensus       352 --~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       352 --YHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             --chhHHHHHHHHHHHHHHHHhe
Confidence              223344455555555554443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=2.1e-33  Score=264.82  Aligned_cols=342  Identities=13%  Similarity=0.087  Sum_probs=267.6

Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHH
Q 013707           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII   93 (438)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~   93 (438)
                      .+..++..++..+..|.+|.+.+        +++.+..+.++..+.+.++..+++++.|+++||+|||+++..+....++
T Consensus        19 ~l~~~~~~~~~~~~~~~~~~~~~--------~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~   90 (406)
T PRK15402         19 VLFEFATYIANDMIQPGMLAVVE--------DFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL   90 (406)
T ss_pred             HHHHHHHHhhhhhHhcchHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            34445556678888999998865        4566678889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH----hhH
Q 013707           94 PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LST  169 (438)
Q Consensus        94 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w  169 (438)
                      +.+...++++   ++.+++.|+++|+ +.+...+...+++.|.+|+++|.+.++.......+|..+||.+++.    .+|
T Consensus        91 ~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w  166 (406)
T PRK15402         91 TCLAILLAQS---IEQFTLLRFLQGI-GLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPW  166 (406)
T ss_pred             HHHHHHHHcc---HHHHHHHHHHHHh-HhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence            9999999998   8899999999999 7788888899999999999999999999988888888889888766    489


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhH
Q 013707          170 TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLS  249 (438)
Q Consensus       170 ~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (438)
                      |+.|++.+++.++..+...+..||++++++++                         .   +..+..+..+..+++|.++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~---~~~~~~~~~~~~~~~~~~~  218 (406)
T PRK15402        167 RGMFVLFAALAALSFFGLWRAMPETAGRVGEK-------------------------L---SLKELGRDYKLVLKNRRFV  218 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCCCCcccccc-------------------------c---cHHHHHHHHHHHHcCcHHH
Confidence            99999988887776665556667654321110                         0   0011222234456677777


Q ss_pred             HHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 013707          250 QAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFI  329 (438)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  329 (438)
                      ...+..++............|.|+++.+|+++.+.+.......++..++. ++.+++.||+++|+.+..+.+...++.+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~-~~~g~l~~r~~~~~~~~~~~~~~~~g~~~  297 (406)
T PRK15402        219 AGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGN-LTLARLTSRRPLRSLIRMGLWPMVAGLLL  297 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            76666666655555666778989888889999999988777777777877 88899999999999988888877777766


Q ss_pred             hHhcc-----cchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          330 CSISW-----SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       330 ~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      +....     +.+.... ..+.+++.+...+..+..... .+++++|++.+..+..+.++..+|+.+.+.+++.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~  370 (406)
T PRK15402        298 AALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG  370 (406)
T ss_pred             HHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            65432     2222233 566777777777776666544 4558999999999999999999999999998775

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=4.6e-34  Score=276.13  Aligned_cols=374  Identities=11%  Similarity=0.104  Sum_probs=292.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHH
Q 013707            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (438)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (438)
                      ....++++.++..++..+..+.+|.+.+        +++.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~--------~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   74 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAG--------DLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLIST   74 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHH
Confidence            3456677888899999999999999976        44566678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh-
Q 013707           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (438)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-  167 (438)
                      ++..++.++++++++   ++.+++.|+++|+ +.+...+...+++.|++|+++|++++++......+|..+||.+++++ 
T Consensus        75 ~~~~~~~~~~~~~~~---~~~l~~~~~~~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  150 (485)
T TIGR00711        75 FAFTLGSLLCGVAPN---LELMIIFRVIQGF-GGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII  150 (485)
T ss_pred             HHHHHHHHHHhCcCC---HHHHHHHHHHHHh-hhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence            999999999999999   9999999999999 88888899999999999999999999999999999999999988874 


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchh----------ccccccCCCCCCCCC---------
Q 013707          168 ---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITE----------ETEGVNQNESNSPVK---------  225 (438)
Q Consensus       168 ---~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~---------  225 (438)
                         +||+.|++.+++.++..+...+..||++++++++.|..+....          ..+...++..+....         
T Consensus       151 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (485)
T TIGR00711       151 ENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLV  230 (485)
T ss_pred             cCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHH
Confidence               8999999998887777666667777755433222221111000          000000000000000         


Q ss_pred             ------ccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHH
Q 013707          226 ------IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQ  299 (438)
Q Consensus       226 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  299 (438)
                            ..+.+.+++..+ . ..+++|.++...+..++..+.......++|.|+++.+|+++.+.+.......++..++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~  308 (485)
T TIGR00711       231 AIIAFVVWELTDDNPLVD-L-RLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSS  308 (485)
T ss_pred             HHHHHHHHHHcCCCCccC-H-HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence                  000011111111 1 24456777777777777778888888899999999999999999999999999999988


Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhc--c--cchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHH
Q 013707          300 LLFMPLLAPILGEAKLLSLGLFAACINMFICSIS--W--SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQG  374 (438)
Q Consensus       300 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  374 (438)
                       ++.+++.||+++|+.+..+..+.+++...+.+.  +  +.+.... ..+.+++.+...+.......+..|++++|++.|
T Consensus       309 -~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~  387 (485)
T TIGR00711       309 -PIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSS  387 (485)
T ss_pred             -HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHH
Confidence             888999999999999999988888888776632  2  2223333 567788888888777788888899999999999


Q ss_pred             HHhhHhhhhhhhhhHhHHHHHHH
Q 013707          375 CISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       375 ~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      +.+..+.+|+.+|+.+.|.++++
T Consensus       388 ~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       388 LSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999875

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=6.6e-33  Score=263.04  Aligned_cols=351  Identities=11%  Similarity=0.020  Sum_probs=242.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHH
Q 013707           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (438)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~   89 (438)
                      +....++.+++.++...+....|.+.++....+.+  ..+..+.+.+.+...++..++++++|+++||+|||+++..+.+
T Consensus        24 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~  101 (432)
T PRK10406         24 IVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNT--TTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVC  101 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            33445667888899888777777776654211111  1222344555566677777999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccch-----hHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhh
Q 013707           90 LSIIPLAILAYRRSIS-----FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (438)
Q Consensus        90 ~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  164 (438)
                      +++++++++++++++.     ....+++.|+++|+ +.|...|...+++.|++|+++|++..+..+.....|.++++.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~-g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~  180 (432)
T PRK10406        102 MMCFGSLVIACLPGYETIGTWAPALLLLARLFQGL-SVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVV  180 (432)
T ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHh-hhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999832     12468999999999 88999999999999999999999999998888888877776543


Q ss_pred             H------------HhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccC
Q 013707          165 R------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI  232 (438)
Q Consensus       165 ~------------~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (438)
                      .            ..|||.+|++.+++.++. ++....+||+++.++++                         .  ++.
T Consensus       181 ~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~~~~~~-------------------------~--~~~  232 (432)
T PRK10406        181 VVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETSQQETRA-------------------------L--KEA  232 (432)
T ss_pred             HHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCchHHHhh-------------------------h--ccc
Confidence            2            258999999888776544 33334456544321100                         0  001


Q ss_pred             CchhHHHHhhcccchhHHHHHHHHH-HHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013707          233 PSIRDLICLLRSSVTLSQAAVVAFF-SGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG  311 (438)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  311 (438)
                      .++++    +++++..+...+..++ .....+...+++|.|+++.+|++..+.+...+...+...+++ .+.|+++||++
T Consensus       233 ~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~-~~~G~l~Dr~g  307 (432)
T PRK10406        233 GSLKG----LWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQ-PLIGALSDKIG  307 (432)
T ss_pred             ccHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcC
Confidence            13344    3345555544443333 355667788899999988889999898888888888888887 67789999999


Q ss_pred             hhhHHHHHHHHHHHHHHHhH--h--cccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhh-hhh
Q 013707          312 EAKLLSLGLFAACINMFICS--I--SWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSF-ANI  385 (438)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~  385 (438)
                      ||+.+..+..+..+....+.  .  .++...... ..+.....+...+....+.+|.+|++.|+++.|+.+...+. .+.
T Consensus       308 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~  387 (432)
T PRK10406        308 RRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGG  387 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHh
Confidence            99887766554433322111  1  112222222 22222333344456677889999999999999999887664 344


Q ss_pred             hhhHhHHHHHHH
Q 013707          386 VSPLIFSPLTAL  397 (438)
Q Consensus       386 ~g~~~~g~l~~~  397 (438)
                      ..|.+.+. .+.
T Consensus       388 ~~p~~~~~-l~~  398 (432)
T PRK10406        388 SAEYVALS-LKS  398 (432)
T ss_pred             HHHHHHHH-HHH
Confidence            57777774 454

>PRK12382 putative transporter; Provisional

Probab=100.00  E-value=1.8e-33  Score=264.08  Aligned_cols=365  Identities=15%  Similarity=0.126  Sum_probs=265.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhH
Q 013707            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (438)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~   85 (438)
                      +++.+..+.+..++..++.++..|.+|.+..+       |++.+..+.|++.+++.++..+++++.|+++||+||||++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~-------~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~   85 (392)
T PRK12382         13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHH-------DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSAL   85 (392)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHH-------hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHH
Confidence            46677778888899999999999999988653       55777889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH---hccc--chhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhh
Q 013707           86 LPLTLSIIPLAILA---YRRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG  160 (438)
Q Consensus        86 ~~~~~~~~~~~~~~---~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  160 (438)
                      .+.+...++.+...   ..++  ...++.+++.|+++|+ +.+...+...+++.|+.|+|+|++++++.+.+...|..+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g  164 (392)
T PRK12382         86 QGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGF-GESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAG  164 (392)
T ss_pred             HHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHH
Confidence            98887766554332   2211  1127889999999999 8888888889999999999999999999999999999999


Q ss_pred             HhhhHH----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchh
Q 013707          161 TLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (438)
Q Consensus       161 ~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (438)
                      |.+++.    ++|+..+.+..+..++..    ...++.+++++++                         +   ++++.+
T Consensus       165 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-------------------------~---~~~~~~  212 (392)
T PRK12382        165 APLGLLLHSHFGFAALALTTMVLPLLAW----AFNGTVRKVPAHA-------------------------G---ERPSLW  212 (392)
T ss_pred             HHHHHHHHhccChHHHHHHHHHHHHHHH----HHHHhccCCCCCc-------------------------c---cCchHH
Confidence            988876    488887766544432221    1222222111100                         0   001122


Q ss_pred             HHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 013707          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (438)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  316 (438)
                      +..+.++++      .+..++..........+.|.|+++ .++++  .+......+++.++++ +..+++.||+++|+.+
T Consensus       213 ~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~  282 (392)
T PRK12382        213 SVVGLIWKP------GLGLALQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMR-VLFGWMPDRFGGVKVA  282 (392)
T ss_pred             HHHHHHHHh------HHHHHHHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHH-HHHHHHHHhcCCCeeh
Confidence            222222211      112223334455566777888876 46654  3555566677777777 7888999999999998


Q ss_pred             HHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHH
Q 013707          317 SLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  395 (438)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  395 (438)
                      ..+..+..++.+.+.+.++.+.... ..+.+++.+...+...+...+..|+++||++.|+.+....+|..++|.+.|.+.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~  362 (392)
T PRK12382        283 IVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLA  362 (392)
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888877777666554444 566778888888888888899999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 013707          396 ALFLSKGAPFNFPGFSIMCIGLASVRAFTYELL  428 (438)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (438)
                      |+.+        ....+.+.+++.+++....+.
T Consensus       363 ~~~g--------~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        363 TSFG--------YPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHhC--------chHHHHHHHHHHHHHHHHHHh
Confidence            9742        223444455555555554443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=8.9e-33  Score=263.54  Aligned_cols=339  Identities=13%  Similarity=0.073  Sum_probs=241.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHhhhhcchhhH
Q 013707           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI-SFFYAYYALRTLTAMVCEGSI  125 (438)
Q Consensus        47 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~  125 (438)
                      +.+..+.|++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+.+++++.. ..++.+++.|++.|+ +.+..
T Consensus        59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi-~~g~~  137 (452)
T PRK11273         59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW-FQGMG  137 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHH-HHhcc
Confidence            7777889999999999999999999999999999999999999999999888876411 117788999999999 77887


Q ss_pred             hhhhhHhhhccCCccchhHHHHHHHHHHHhhh-hhhHhhhHH----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 013707          126 NCLALAYVADNISERQRASAFGILLGVLSASF-VCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (438)
Q Consensus       126 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~  200 (438)
                      .+.....+.|++|+++|++++++.+.+.++|. +.+|+++..    .+||+.|++.+++.++..++..+++||++++...
T Consensus       138 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~  217 (452)
T PRK11273        138 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGL  217 (452)
T ss_pred             chHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCC
Confidence            78788889999999999999999999998886 445654322    3899999999888777667777788887654321


Q ss_pred             CCCCcccchhccccccCCCCCCCCCccccccCCchhHH-HHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCC
Q 013707          201 DDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL-ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHF  279 (438)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  279 (438)
                      +++.+ .    +++..  ++.+. ++   ++..+.++. .+..++++.++...+..++.....+....++|.|+++..|+
T Consensus       218 ~~~~~-~----~~~~~--~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~  286 (452)
T PRK11273        218 PPIEE-Y----KNDYP--DDYNE-KH---EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHF  286 (452)
T ss_pred             CChhh-h----hhccc--ccccc-cc---CCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            11100 0    00000  00000 00   011122332 23356788888888887777777778889999999998899


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--chhhH-HHHHHHHHHHHHHHhHhcc--cchHHHH-HHHHHhhhhhhH
Q 013707          280 NKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEAKL-LSLGLFAACINMFICSISW--SAWVPYA-TTAFSVLVVFAT  353 (438)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~  353 (438)
                      +..+.+.......++.+++. ++.|+++||+  +||.. ......+..++.+.+....  +.+.... ....+.......
T Consensus       287 s~~~~~~~~~~~~~~~~~g~-~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  365 (452)
T PRK11273        287 ALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPV  365 (452)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHH
Confidence            99999988888888888888 8889999998  44432 2222333333333332222  2222222 233333322223


Q ss_pred             HHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhh-hhHhHHHHHHHH
Q 013707          354 PSFRSIVSKQVGPNEQGKAQGCISGISSFANIV-SPLIFSPLTALF  398 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-g~~~~g~l~~~~  398 (438)
                      +....+..|.+|++.||++.|+.+....+|+.+ +|.+.|.+.|+.
T Consensus       366 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~  411 (452)
T PRK11273        366 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF  411 (452)
T ss_pred             HHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Confidence            334456779999999999999999999888765 799999999985

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=9.2e-35  Score=269.23  Aligned_cols=343  Identities=24%  Similarity=0.320  Sum_probs=268.9

Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHH
Q 013707           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (438)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~   92 (438)
                      +++..++..++.++..|.+|.+..       ++++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus         1 L~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~   73 (352)
T PF07690_consen    1 LFLAFFLSGFGFSIISPALPLYLA-------EELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFA   73 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHH-------CCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHH-------HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhh
Confidence            356778888899999999994332       3667777889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh----h
Q 013707           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----S  168 (438)
Q Consensus        93 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~  168 (438)
                      ++..+..++++   .+.+++.|++.|+ +.+...+...+++.|++|+|+|++++++.+...++|.++||.+++.+    +
T Consensus        74 ~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~  149 (352)
T PF07690_consen   74 LGSLLLAFASN---FWLLLIARFLLGI-GSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG  149 (352)
T ss_dssp             HHHHHHHHHCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH
T ss_pred             hHHHHhhhhhh---HHHHhhhcccccc-ccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc
Confidence            99666667677   7799999999999 88999999999999999999999999999999999999999999874    8


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchh
Q 013707          169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTL  248 (438)
Q Consensus       169 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (438)
                      ||+.|++.+++.++..++.....++++++++++++.++              +       .+.++++++.++.++++|.+
T Consensus       150 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~--------------~-------~~~~~~~~~~~~~~~~~~~~  208 (352)
T PF07690_consen  150 WRWAFLISAILSLIAAILFILFLPEPPPPRERESPKES--------------E-------SKKPKPLKPGFKSLFKNPVL  208 (352)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTT--------------T---------HHHCCCH-CTHHHHHHCC
T ss_pred             cccccccccchhhhhhhhHhhhhhhccccccccccccc--------------c-------cccccccccccccccccchh
Confidence            99999999999887766544566665554433211000              0       00111222223345566766


Q ss_pred             HHHHHHHHHHHhhhchhhHHHHHHHHhHcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 013707          249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFN-KNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (438)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (438)
                      +......++..+.......+.|.|+++.+|++ ..+.+.......+...++. ++.+++.||+++++..........+..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~  287 (352)
T PF07690_consen  209 WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGS-LLAGRLSDRFGRRRRLLIAILLLILGA  287 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            65556666666677778999999988889999 7899999999999999988 888999999998777766666666655


Q ss_pred             HHhHhccc---chHHH-HHHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhh
Q 013707          328 FICSISWS---AWVPY-ATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSP  388 (438)
Q Consensus       328 ~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~  388 (438)
                      ..+.+...   ....+ ...+.+++.+...+...++..+.+|++++|++.|+.+...+++..+||
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  288 LGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            55544332   23333 367788889999999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10054 putative transporter; Provisional

Probab=100.00  E-value=1e-33  Score=264.80  Aligned_cols=353  Identities=15%  Similarity=0.172  Sum_probs=276.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCc
Q 013707            1 MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR   80 (438)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Gr   80 (438)
                      ||.+. ||.++.+.+..++...+.+...|.+|.+.++       +++.+..+.|++.+.+.++..+++++.|+++||+||
T Consensus         1 ~~~~~-~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~-------~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~   72 (395)
T PRK10054          1 MNLSL-RRSTSALLASSLLLTIGRGATLPFMTIYLSR-------QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDK   72 (395)
T ss_pred             CCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            44433 4567778888999999999999999998754       567778899999999999999999999999999999


Q ss_pred             chHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhh
Q 013707           81 KAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG  160 (438)
Q Consensus        81 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  160 (438)
                      |+++..+.+...++.+..+++++   ++.+++.|.+.|. +.+...+...++..|..|+++|++++++.....++|..+|
T Consensus        73 k~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~ig  148 (395)
T PRK10054         73 KRYMLLAITAFASGFIAIPLVNN---VTLVVLFFALINC-AYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVG  148 (395)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998   8888888988888 6677788899999999999999999999999999999999


Q ss_pred             HhhhHHh---hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhH
Q 013707          161 TLAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (438)
Q Consensus       161 ~~l~~~~---~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (438)
                      |.+++.+   +|+.+|++.+++.++..+...+.+||++++++++                         ++ +   . .+
T Consensus       149 p~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~-------------------------~~-~---~-~~  198 (395)
T PRK10054        149 PPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE-------------------------TG-S---V-WS  198 (395)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccccccccc-------------------------hh-h---h-hh
Confidence            9998875   8999999888777666555555566654322111                         00 0   0 01


Q ss_pred             HHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhH--cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 013707          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ--FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (438)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  315 (438)
                       .+...++|.++...+..++..+.......+.+.|..+.  .+.+....+.+...........+ ...+++.||.++|+.
T Consensus       199 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~  276 (395)
T PRK10054        199 -PSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQ-YSVGRRLNAANIRPL  276 (395)
T ss_pred             -hhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeeh-hHHHHHHccCCchhH
Confidence             12245667777766666666666555556667776433  35566677777777777666666 667799999999999


Q ss_pred             HHHHHHHHHHHHHHhHhcc-cchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHH
Q 013707          316 LSLGLFAACINMFICSISW-SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSP  393 (438)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~  393 (438)
                      +..+..+..++...+.+.. +.+...+ ..+.+++.....|...+.+.+..|++.++++.+..+ ...+|..+||.++|.
T Consensus       277 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~  355 (395)
T PRK10054        277 MTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGV  355 (395)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHH
Confidence            8888888888877776543 4433333 567788888878888899999999999999998755 677899999999999


Q ss_pred             HHHHH
Q 013707          394 LTALF  398 (438)
Q Consensus       394 l~~~~  398 (438)
                      ++|+.
T Consensus       356 l~~~~  360 (395)
T PRK10054        356 ILTTL  360 (395)
T ss_pred             HHHHc
Confidence            99984

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=5.1e-33  Score=260.84  Aligned_cols=343  Identities=16%  Similarity=0.156  Sum_probs=270.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      ++....+....++..++..+..|.+|.+.+        +++.+..+.|++.+.+.++..+++++.|+++||+|||+++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~   75 (385)
T TIGR00710         4 KAFALLLGCLSILGPLGIDMYLPAFPEIAA--------DLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLL   75 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHH
Confidence            444555555566677888999999998866        456677889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH
Q 013707           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (438)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (438)
                      +.++..++.+...++++   ++.+++.|++.|+ +.+...+...+++.|++|+++|+++++..+....+|..+||.+++.
T Consensus        76 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  151 (385)
T TIGR00710        76 GLFIFALSSLGLALSNN---IETLLVLRFVQAF-GASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGY  151 (385)
T ss_pred             HHHHHHHHHHHHHHHcc---HHHHHHHHHHHHc-chhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   8999999999999 8888889999999999999999999999999999999999988876


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhh
Q 013707          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (438)
Q Consensus       167 ----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (438)
                          .+||..|++.++..++..+...+..||++++++++                            +..+..+ ..+..
T Consensus       152 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~-~~~~~  202 (385)
T TIGR00710       152 ILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARI----------------------------QISTYFE-TFLLL  202 (385)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC----------------------------CHHHHHH-HHHHH
Confidence                38999999988877766666666667654322110                            0000112 23335


Q ss_pred             cccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 013707          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (438)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  322 (438)
                      .++|.++...+...+..........+.|.++++.+|+++.+.+.+.....++.+++. ++.+++.||+++|+.+..+..+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~  281 (385)
T TIGR00710       203 LKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGG-FLNGRFIKKWGAKSLLRMGLIL  281 (385)
T ss_pred             HcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHH
Confidence            566777766666655556666677778989988899999999999999999988888 8889999999999988888777


Q ss_pred             HHHHHHHhHhcc----cch-HHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHH
Q 013707          323 ACINMFICSISW----SAW-VPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFS  392 (438)
Q Consensus       323 ~~~~~~~~~~~~----~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g  392 (438)
                      ..++..++....    +.+ .... ..+.+++.+...+.......|..| +++|++.++.+.....++.+.+.+.+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       282 FAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            777666554432    122 2222 455677788888888888888776 78999999999888776666666666

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=1.7e-33  Score=267.43  Aligned_cols=358  Identities=13%  Similarity=0.118  Sum_probs=259.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      ++.+...++..+.+.++.....+..|.+.+        +++.+..+.+++.+++.++..+++++.|+++||+|||+++..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~   88 (426)
T PRK12307         17 KNALFSAWLGYVFDGFDFMLIFYIMYLIKA--------DLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMW   88 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            345666677778888888888888888755        556677888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH
Q 013707           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (438)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (438)
                      +.++.+++.++++++++   ++.+++.|+++|+ +.+...+....++.|++|+|+|++++++...+..+|.++++.+.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~  164 (426)
T PRK12307         89 SIVAYSVGTGLSGLASG---VIMLTLSRFIVGM-GMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS  164 (426)
T ss_pred             HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence            99999999999999999   9999999999999 8888889999999999999999999999999999999999887765


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhh
Q 013707          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (438)
Q Consensus       167 ----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (438)
                          .+||+.|++.....+ ..+......||+++.++++.+         +  .+++     ++..   ....+...+..
T Consensus       165 l~~~~~w~~~f~i~~~~~~-~~~~~~~~~p~~~~~~~~~~~---------~--~~~~-----~~~~---~~~~~~~~~~~  224 (426)
T PRK12307        165 FAEAYGWRAAFFVGLLPVL-LVIYIRARAPESKEWEEAKLS---------G--KGKH-----SQSA---WSVFSLSMKGL  224 (426)
T ss_pred             HcccCCHHHHHHHHHHHHH-HHHHHHHHCCCChHHHHhhhh---------c--cccc-----cccc---hhhhhHHHHHH
Confidence                489999988654322 222222223433221111000         0  0000     0000   00011112234


Q ss_pred             cccchhHHHHHHH---HHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q 013707          243 RSSVTLSQAAVVA---FFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (438)
Q Consensus       243 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (438)
                      .+++.++......   +...........++|.|+++ .|+++.+.+...+...++.++++ ++.+++.||+++|+.+..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~-~~~g~l~dr~~~~~~~~~~  302 (426)
T PRK12307        225 FNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGN-IVWGLCADRIGLKKTFSIG  302 (426)
T ss_pred             HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHH
Confidence            4455554333222   22222333456788999987 59999999999998999999988 8889999999999988888


Q ss_pred             HHHHHHHHHHhHhccc-chHHHHHHHHHhh--hhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          320 LFAACINMFICSISWS-AWVPYATTAFSVL--VVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       320 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      ..+..+..+......+ ........+++.+  .....+....++.|.+|+++||++.|+.+....+++.++|.+.|.+.+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~  382 (426)
T PRK12307        303 LLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI  382 (426)
T ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence            8777666554443332 2222222333322  223345566778999999999999999999999999999999999988


Q ss_pred             HH
Q 013707          397 LF  398 (438)
Q Consensus       397 ~~  398 (438)
                      ..
T Consensus       383 ~~  384 (426)
T PRK12307        383 TM  384 (426)
T ss_pred             cc
Confidence            63

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=6.6e-33  Score=266.63  Aligned_cols=378  Identities=13%  Similarity=0.073  Sum_probs=287.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      ++.++.++++.++..++.....+.+|.+.+        +++.+..+.|++.+.+.++..++.+++|+++||+|||++++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--------~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~   80 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ--------SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFT   80 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            446677888888888899999999999976        456677788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH
Q 013707           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (438)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (438)
                      +..+.+++.+++.++++   ++.+++.|+++|+ +.+...|...+++.|++|+++|+++.+..+...++|..+||.+++.
T Consensus        81 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~  156 (471)
T PRK10504         81 AIVLFTLGSLFCALSGT---LNELLLARVLQGV-GGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGL  156 (471)
T ss_pred             HHHHHHHHHHHHHHhCC---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            99999999988889888   8899999999999 8888889999999999999999999999999999999999988876


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhc--------cccccCCCCCCCC----------
Q 013707          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEE--------TEGVNQNESNSPV----------  224 (438)
Q Consensus       167 ----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~----------  224 (438)
                          .+||+.|++..+...+..+......|+.+.+.. +.|........        .....+.......          
T Consensus       157 l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (471)
T PRK10504        157 LVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTR-RFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGV  235 (471)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHH
Confidence                489999999888776666655555555433222 11211110000        0000000000000          


Q ss_pred             ------CccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHH
Q 013707          225 ------KIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTIS  298 (438)
Q Consensus       225 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  298 (438)
                            ..++++..++..+ .+ +++||.++......++..........+.|.|+++.+|.++.+.++......++..++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~-~~-l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~  313 (471)
T PRK10504        236 VALLLYLLHARNNNRALFS-LK-LFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGM  313 (471)
T ss_pred             HHHHHHHHHHhcCCCCccC-HH-HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence                  0000000011111 11 456777888777778777777777788899999888999999999888888877777


Q ss_pred             HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcc-cch--HHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHH
Q 013707          299 QLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW-SAW--VPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQG  374 (438)
Q Consensus       299 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  374 (438)
                      . .+.+++.||+++|+.+..+..+..+...++.+.. +.+  .... ..+.|++.+...+..+....+.+|++++|++.|
T Consensus       314 ~-~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~  392 (471)
T PRK10504        314 K-RIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNS  392 (471)
T ss_pred             H-HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHH
Confidence            6 7789999999999999888887777766655532 222  2222 455677788888888899999999999999999


Q ss_pred             HHhhHhhhhhhhhhHhHHHHHHHHhc
Q 013707          375 CISGISSFANIVSPLIFSPLTALFLS  400 (438)
Q Consensus       375 ~~~~~~~~g~~~g~~~~g~l~~~~~~  400 (438)
                      +.++.+.+|..+|+.+.|.+.+..+.
T Consensus       393 ~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        393 LLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999987643

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=1.5e-32  Score=258.31  Aligned_cols=374  Identities=12%  Similarity=0.122  Sum_probs=268.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhH
Q 013707            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (438)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~   85 (438)
                      ++|.+....++.++..++.+...+.++.+.+        |.+.+..+.|++.+.+.++..+++++.|+++||+|||+++.
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~   82 (402)
T TIGR00897        11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFLK--------ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMM   82 (402)
T ss_pred             CCchhhHHHHHHHHHHHhhhhHHHhHHHHHH--------HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            4678888899999999999888888888875        44667788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH---hc-ccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhh-hhh
Q 013707           86 LPLTLSIIPLAILA---YR-RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASF-VCG  160 (438)
Q Consensus        86 ~~~~~~~~~~~~~~---~~-~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g  160 (438)
                      .+..+.+++.+++.   .. ++   ++.+++.|+++|+ +.+...+...+.+.|..|+|+|++++|+.+...++|. ++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~i~G~-g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g  158 (402)
T TIGR00897        83 IGLLLWCVGHAAFIVFGLGHAN---YPLILLFYGIRGL-GYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFG  158 (402)
T ss_pred             HHHHHHHHHHHHHHHHhccCcc---HHHHHHHHHHHHc-chHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888876553   22 45   7888899999999 7777777788889999999999999999999999996 578


Q ss_pred             HhhhHH----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchh
Q 013707          161 TLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (438)
Q Consensus       161 ~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (438)
                      |.+++.    +||+..+|......++..++..+..+|.+++++++                  ++     .   +..+.+
T Consensus       159 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~-----~---~~~~~~  212 (402)
T TIGR00897       159 SYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ------------------TR-----E---KFSELG  212 (402)
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCccccc------------------CC-----c---chhhHH
Confidence            888765    47666555544433333333344445432211110                  00     0   001112


Q ss_pred             HHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 013707          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (438)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  316 (438)
                      +..+.++++|.++...+..++.........++.|.|.++ +|+++.+.+.+.....++..++. +..++++||+++|+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~~  290 (402)
T TIGR00897       213 KAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFN-VIFGIVGDKLGWMNTV  290 (402)
T ss_pred             HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHhhcchhHH
Confidence            223346678888877777777777777888899999876 79999999988888889999988 8889999999988765


Q ss_pred             H-HHHHHHHHHHHHhHh-----cccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhH
Q 013707          317 S-LGLFAACINMFICSI-----SWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPL  389 (438)
Q Consensus       317 ~-~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~  389 (438)
                      . .+.+...++...+..     .++.+..+. ..+.+++.+...+ ......+. ++++||++.|+.+....+++.++|.
T Consensus       291 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~  368 (402)
T TIGR00897       291 RWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPA  368 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHH
Confidence            3 333333333222221     122333323 4556666655444 34555665 5579999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 013707          390 IFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLL  429 (438)
Q Consensus       390 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (438)
                      +.|.++|..+        ....+.+.+++.+++.....++
T Consensus       369 i~g~l~~~~g--------~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       369 IAVLFIGFFG--------AIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHhhcc--------hHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999732        2223444555555555555444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=3.1e-33  Score=261.44  Aligned_cols=333  Identities=15%  Similarity=0.087  Sum_probs=259.2

Q ss_pred             hhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhccc
Q 013707           24 TMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRS  103 (438)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~  103 (438)
                      .....+..|.+.+        +++.+..+.|++.+++.++..+++++.|+++||+|||+++..+..+.+++.+.++++++
T Consensus        19 ~~~~~~~~~~~~~--------~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~   90 (377)
T TIGR00890        19 VYTWTLLAPPLGR--------YFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADS   90 (377)
T ss_pred             HhhhhhHHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHH
Confidence            3445567777654        55777889999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH----hhHHHHHHHHHHH
Q 013707          104 ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAATIV  179 (438)
Q Consensus       104 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f~~~~~~  179 (438)
                         ++.+++.|++.|+ +.+...+.....+.|++| |+|+++.++.....++|..+++.+.+.    .+||+.|++.+++
T Consensus        91 ---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~  165 (377)
T TIGR00890        91 ---LAALYLTYGLASA-GVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGII  165 (377)
T ss_pred             ---HHHHHHHHHHHhH-HHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence               9999999999999 888877788888899887 679999999999999998765544443    3799999999988


Q ss_pred             HHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHH
Q 013707          180 SMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSG  259 (438)
Q Consensus       180 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (438)
                      .++..+..++.+||+++++++++                 ++     . .++..+.+    ...++|.++...+..++..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~-----------------~~-----~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~  218 (377)
T TIGR00890       166 FLLVIVLGAFLIGYPPGQLIKTN-----------------IE-----V-SVKDYTVW----EMLRTPQFWVLYLSFFLNA  218 (377)
T ss_pred             HHHHHHHHHHheecCchhccccC-----------------cc-----c-chhhhhHH----HHHcCccHHHHHHHHHHHh
Confidence            87776666666666543221110                 00     0 00001112    2445666666666555555


Q ss_pred             hhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchH-
Q 013707          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWV-  338 (438)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  338 (438)
                      ........+.+.|.++ +|.++.+.+...+...+...+++ +..+++.||++||+.+..+.....++.+.+.+.++... 
T Consensus       219 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (377)
T TIGR00890       219 VSGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGR-PFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDV  296 (377)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhH
Confidence            5555556667777665 78999888999999999999988 88899999999999998888888888877766554322 


Q ss_pred             -HHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          339 -PYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       339 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                       ... ..+.+++.+...+...++..|.+|+++|+++.|+.+....+|..++|.+.|.+.++.
T Consensus       297 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~  358 (377)
T TIGR00890       297 LFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI  358 (377)
T ss_pred             HHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence             222 345566666667777888999999999999999999999999999999999998863

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=7e-34  Score=274.26  Aligned_cols=376  Identities=13%  Similarity=0.115  Sum_probs=258.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHH
Q 013707            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (438)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (438)
                      +......++.+...++...+.+..|.+.+++..+-.++.+.+..+.|++.+++.++..++++++|+++||+|||+++..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~   91 (479)
T PRK10077         12 SITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIA   91 (479)
T ss_pred             HHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            34445556677778888888888888877765444556788889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc---------ccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhh
Q 013707           88 LTLSIIPLAILAYR---------RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFV  158 (438)
Q Consensus        88 ~~~~~~~~~~~~~~---------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  158 (438)
                      .++..++.+.++++         ++.+.++.+++.|+++|+ +.|...+...++++|++|+++|+++++..+.+..+|..
T Consensus        92 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~  170 (479)
T PRK10077         92 AVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGI-GVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQL  170 (479)
T ss_pred             HHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhh-hHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHH
Confidence            99998888877763         233335778899999999 88999999999999999999999999999999999998


Q ss_pred             hhHhhhHH------------hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCc
Q 013707          159 CGTLAARF------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKI  226 (438)
Q Consensus       159 ~g~~l~~~------------~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (438)
                      +++.++..            .+||++|++.+++.++.. +..+++||+|++..++++.++..+..++....++    .++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~----~~~  245 (479)
T PRK10077        171 VVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL-MLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL----ATQ  245 (479)
T ss_pred             HHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH-HHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh----HHH
Confidence            88776542            489999999888776654 4456789987532111111111000000000000    000


Q ss_pred             cccccCCchhHHHHh-hcccchh-----HHHHH----HHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHH
Q 013707          227 PVCKKIPSIRDLICL-LRSSVTL-----SQAAV----VAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGT  296 (438)
Q Consensus       227 ~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  296 (438)
                          ..++.++..+. ..+.+..     .....    ..+...........+.|.+.++ .|.+...........++..+
T Consensus       246 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~  320 (479)
T PRK10077        246 ----ALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINL  320 (479)
T ss_pred             ----HHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHH
Confidence                00000110000 0000000     00111    1111111222334455666655 68887776777777778888


Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcc--c-chHHH--HHHHHHhhhhh-hHHHHHHHHhhcCCCCcch
Q 013707          297 ISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW--S-AWVPY--ATTAFSVLVVF-ATPSFRSIVSKQVGPNEQG  370 (438)
Q Consensus       297 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g  370 (438)
                      ++. ++.++++||+|||+.+..+.++.+++.+.+....  + .....  ...+.+.+.+. ..|..+.+++|.+|+++|+
T Consensus       321 i~~-~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  399 (479)
T PRK10077        321 TFT-VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG  399 (479)
T ss_pred             HHH-HHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHH
Confidence            888 8889999999999999999998888877765432  2 22111  23333333333 3467889999999999999


Q ss_pred             hHHHHHhhHhhhhhhhhhHhHHHHH
Q 013707          371 KAQGCISGISSFANIVSPLIFSPLT  395 (438)
Q Consensus       371 ~~~g~~~~~~~~g~~~g~~~~g~l~  395 (438)
                      ++.|+.+..+.++..+++.+.+.+.
T Consensus       400 ~~~g~~~~~~~~g~~~~~~~~p~~~  424 (479)
T PRK10077        400 KALAIAVAAQWIANYFVSWTFPMMD  424 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            9999999999999999988876554

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=100.00  E-value=9.9e-33  Score=262.01  Aligned_cols=377  Identities=16%  Similarity=0.179  Sum_probs=307.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhH
Q 013707            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (438)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~   85 (438)
                      ++|.+..++.+.+++.+|..+....++.++.+        .+-|+...++++++..++.++.+++.|.++||++||++++
T Consensus         8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~--------lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili   79 (524)
T PF05977_consen    8 RNRNFRRLWIAQLISNLGDWMQTVALAWLVTQ--------LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI   79 (524)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence            35678889999999999999999999998774        3556688899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhc--ccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhh
Q 013707           86 LPLTLSIIPLAILAYR--RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (438)
Q Consensus        86 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l  163 (438)
                      .+.++.++.....++.  .+....+.+++.-++.|+ +.+...|+.++++.|..|+++..+++++.+...+++.++||.+
T Consensus        80 ~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~-~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPal  158 (524)
T PF05977_consen   80 LSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGI-GSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPAL  158 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchH
Confidence            9998877665544432  222227889999999999 8999999999999999999999999999999999999999999


Q ss_pred             hHHh----hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHH
Q 013707          164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (438)
Q Consensus       164 ~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (438)
                      +|.+    |-.+.|.+.++..++. +......++++++++.                          +.++..+.+++.+
T Consensus       159 gG~Lva~~G~~~~f~inalsfl~~-i~~l~~~~~~~~~~~~--------------------------~~e~~~~~l~~G~  211 (524)
T PF05977_consen  159 GGILVAFFGAAAAFLINALSFLIS-ILALLRWKPPPPPSSL--------------------------PRERFFSALREGL  211 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcccccccccc--------------------------chhhhhhhHHHHH
Confidence            9873    7788898887765444 3333334332221111                          1112234678888


Q ss_pred             HhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q 013707          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (438)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (438)
                      +..+++|.+...++..++.++........+|.+.++.+|.++...|++.+..+++.++++ ++.+++.+|+++++++..+
T Consensus       212 ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Ga-l~~~~l~~~~~~~~lv~~~  290 (524)
T PF05977_consen  212 RYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGA-LLLPRLRRRLSSRRLVLLA  290 (524)
T ss_pred             HHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHH-HHHHHhhcccCcchhhHHH
Confidence            889889988888777777777777778889999999999999999999999999999999 7788999999999998899


Q ss_pred             HHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          320 LFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      .+..+++.+.+++.++.+.... .++.|++.....+..++.+++.+|++.||++++++++....+..+|..+.|.+.+..
T Consensus       291 ~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~  370 (524)
T PF05977_consen  291 SLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF  370 (524)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999888876665 677788888888999999999999999999999999999999999999999999974


Q ss_pred             hcCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013707          399 LSKGAPFNFPGFSIMCIGLASVRAFTYEL  427 (438)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (438)
                              .....+.++++..+++..+..
T Consensus       371 --------g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  371 --------GVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             --------CHHHHHHHHHHHHHHHHHHHH
Confidence                    233344555555555444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=100.00  E-value=4.5e-32  Score=254.81  Aligned_cols=351  Identities=15%  Similarity=0.106  Sum_probs=266.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCc
Q 013707            1 MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR   80 (438)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Gr   80 (438)
                      ||.++.+|.+.......++..++.....|.+|.+.+        +++.+..+.+++.+.+.++..+++++.|+++||+||
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~--------~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~gr   72 (394)
T PRK11652          1 MKRQRNVNLLFMLVLLVAVGQMAQTIYVPAIADMAR--------DLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGR   72 (394)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCC
Confidence            554555666666666677777888889999999865        556777889999999999999999999999999999


Q ss_pred             chHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhh
Q 013707           81 KAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG  160 (438)
Q Consensus        81 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  160 (438)
                      |+++..+.....++.+...++++   ++.+++.|++.|+ +.+...+....+..|..++++|+++++..+.+..++..+|
T Consensus        73 r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  148 (394)
T PRK11652         73 RPVILVGMSIFILGTLVALFAHS---LTVLIAASAIQGL-GTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLA  148 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHh-hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998   8999999999999 7777778888899999999999999999999999999999


Q ss_pred             HhhhHH----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchh
Q 013707          161 TLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (438)
Q Consensus       161 ~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (438)
                      |.+++.    .+||+.|++.++..++..+...+..||++++++++                               .+.+
T Consensus       149 ~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~  197 (394)
T PRK11652        149 PLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPADARR-------------------------------TRVL  197 (394)
T ss_pred             HHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccccch-------------------------------hHHH
Confidence            988876    38999999988776665555556677754322111                               0122


Q ss_pred             HHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 013707          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (438)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  316 (438)
                      +.++...++|.++...+..+.............+.++++.+|.++.+.+.+......+..+++ .+.+++.||.+++...
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~-~~~~~l~~~~~~~~~~  276 (394)
T PRK11652        198 ASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGA-WFAGRPNKRFSTLMWQ  276 (394)
T ss_pred             HHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            333345566766665555555555555556677888888889999999998888888877777 7788999988743332


Q ss_pred             HHH-HHHHHHHHHHhHhc--ccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHH
Q 013707          317 SLG-LFAACINMFICSIS--WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFS  392 (438)
Q Consensus       317 ~~~-~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g  392 (438)
                      ... .....+........  .+.+.... ..+.+++.+...|...+...+..| +++|++.++.+....+|..+++.+.+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~  355 (394)
T PRK11652        277 SVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSA  355 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            222 22222222222221  23333333 567788888889999999998887 68899999999999999999998888


Q ss_pred             HHHH
Q 013707          393 PLTA  396 (438)
Q Consensus       393 ~l~~  396 (438)
                      .+.+
T Consensus       356 ~~~~  359 (394)
T PRK11652        356 MLPQ  359 (394)
T ss_pred             HccC
Confidence            7644

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=1.8e-33  Score=263.21  Aligned_cols=359  Identities=14%  Similarity=0.087  Sum_probs=264.8

Q ss_pred             HHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHH
Q 013707           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA   96 (438)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~   96 (438)
                      .+...+......+..|.+.+        +++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~--------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   75 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYLVE--------EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNL   75 (379)
T ss_pred             hhHHHHhHHhhhhhhHHHHH--------HhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHH
Confidence            34455566666777777654        4566778899999999999999999999999999999999999999999999


Q ss_pred             HHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhH-hhhHH----hhHHH
Q 013707           97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT-LAARF----LSTTS  171 (438)
Q Consensus        97 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~l~~~----~~w~~  171 (438)
                      +..++++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..++| .++..    .+||+
T Consensus        76 ~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  151 (379)
T TIGR00881        76 FFGFSTS---LWVMAALWALNGI-FQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHW  151 (379)
T ss_pred             HHHHhhh---HHHHHHHHHHHHh-hccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchh
Confidence            9999998   9999999999999 88888899999999999999999999999999999999998 45443    48999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHH
Q 013707          172 AFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQA  251 (438)
Q Consensus       172 ~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (438)
                      .|++.+++.++..+...+..||++++++.+++.++..         ++.+.. ++.++++.+..+...+...++|.++..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (379)
T TIGR00881       152 VFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN---------EEPDGD-AEKKEEELTKKQIFLQYVLLNKVLWYI  221 (379)
T ss_pred             HHHHHHHHHHHHHHHHheeeCCCccccccCccccCcc---------cccccc-cccccccccchHHHHHHHHhcchHHHH
Confidence            9999888777766666667777655432211100000         000000 000011111222333445677888888


Q ss_pred             HHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhch-hhH-HHHH-HHHHHHHHH
Q 013707          252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE-AKL-LSLG-LFAACINMF  328 (438)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~~~-~~~~~~~~~  328 (438)
                      .+..++..........+.|.|+++.+|+++.+.+.......++.+++. ++.+++.||..+ |+. .... .....++..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~  300 (379)
T TIGR00881       222 SLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGT-LLAGWLSDKLFNGRRGPLAVFFMALIIVSLL  300 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhH-HHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence            888888877888888999999999899999999999999999999988 888999998643 332 2221 122222222


Q ss_pred             HhHhc--ccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          329 ICSIS--WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       329 ~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      .....  .+.+.... ..+.+.......+....+..|.+|+++||++.|+.+...++|..++|.+.|.+.|+.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  373 (379)
T TIGR00881       301 VYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF  373 (379)
T ss_pred             HHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Confidence            22221  12222222 344455444555666778899999999999999999999999999999999999974

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=3.6e-33  Score=263.00  Aligned_cols=367  Identities=17%  Similarity=0.155  Sum_probs=264.9

Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHH
Q 013707           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (438)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~   91 (438)
                      ..++..+...++.....+..|.+.+        +++.+..+.|++.+...++..+++++.|+++||+|||+.+..+.++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~   92 (398)
T TIGR00895        21 LSFLIMLMDGYDLAAMGFAAPAISA--------EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF   92 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHhh--------ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence            3444455555666667777777754        45667788899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh----
Q 013707           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----  167 (438)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----  167 (438)
                      .++.++..++++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++.+....+|..+||.+++.+    
T Consensus        93 ~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  168 (398)
T TIGR00895        93 SVFTLLCALATN---VTQLLILRFLAGL-GLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF  168 (398)
T ss_pred             HHHHHHHHHccc---hHHHHHHHHHHhc-ccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc
Confidence            999999999988   8899999999999 88888899999999999999999999999999999999999888764    


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCC--CcccchhccccccCCCCCCCCCccccccCCchhHHHHhhccc
Q 013707          168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDL--TRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (438)
Q Consensus       168 ~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (438)
                      +|+..|++.+++..+..++....+||+++...++++  .++..+...++..+++++...  ++.++.+..++..+.++++
T Consensus       169 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  246 (398)
T TIGR00895       169 GWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALP--EQKATQGTKRSVFKALFQG  246 (398)
T ss_pred             cceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhcccccccccc--ccccccchhhHHHHHHhcc
Confidence            899999988766666666667778887653222111  001111111111111100000  0001111222323323322


Q ss_pred             ---chhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 013707          246 ---VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (438)
Q Consensus       246 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  322 (438)
                         +......+..++..........+.|.+. +.+|+++.+.+.......++.+++. ++.+++.||+++|+........
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~  324 (398)
T TIGR00895       247 KTARITVLLWLLYFMLLVGVYFLTNWLPKLM-VELGFSLSLAATGGALFNFGGVIGS-IIFGWLADRLGPRVTALLLLLG  324 (398)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcchHHHHHHHHHH
Confidence               2233334444455556666677788444 4579999999999999999999988 8889999999998554443333


Q ss_pred             HHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHH
Q 013707          323 ACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  394 (438)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l  394 (438)
                      ............+.+..+. .++.+++.+...+...++..|.+|+++||++.|+.+....+|..+||.+.|.+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       325 AVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            3333333332344444444 57778888889999999999999999999999999999999999999999875

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=1.2e-31  Score=253.43  Aligned_cols=347  Identities=13%  Similarity=0.087  Sum_probs=263.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHH
Q 013707            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (438)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (438)
                      .+..+.+..++..+......+.+|.+.+        +++.+..+.|+..+.+.+++.+++++.|+++||+|||+++..+.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~--------~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~   98 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQFQQ--------AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            4455666667777888888888888844        55777889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH---HhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhH
Q 013707           89 TLSIIPLAIL---AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (438)
Q Consensus        89 ~~~~~~~~~~---~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~  165 (438)
                      .+.+++.+++   .++++   ++.++++|+++|+ +.+...+..+.++.|+.|+++|.+.++..+....+|..+||.++.
T Consensus        99 ~~~~~~~~l~~~~~~a~~---~~~ll~~r~l~G~-g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~  174 (438)
T PRK10133         99 FLYALGAALFWPAAEIMN---YTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_pred             HHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHH-HHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999875   45778   8999999999999 889999999999999887777777899999999999999887753


Q ss_pred             H------------------------------hhHHHHHHHHHHH-HHHHHHHHHHhcccCCCCCCCCCCCcccchhcccc
Q 013707          166 F------------------------------LSTTSAFQAATIV-SMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEG  214 (438)
Q Consensus       166 ~------------------------------~~w~~~f~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (438)
                      .                              .+||.+|+....+ .++..+......||.+++++++             
T Consensus       175 ~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~~-------------  241 (438)
T PRK10133        175 SLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD-------------  241 (438)
T ss_pred             HHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc-------------
Confidence            2                              2566677644333 2222222222334321110000             


Q ss_pred             ccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHH-HhHcCCChhHHHHHHHHHHH
Q 013707          215 VNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFL-KAQFHFNKNQFADLMLIAGL  293 (438)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~  293 (438)
                                 ++   ..+..++ .+.+.++|.++...+..++..........+.+.|+ ++.+|.++.+.+..+....+
T Consensus       242 -----------~~---~~~~~~~-~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~  306 (438)
T PRK10133        242 -----------AK---QGSFSAS-LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMV  306 (438)
T ss_pred             -----------cc---ccchhhh-HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Confidence                       00   0001111 22345567776666666777777777778888885 56689999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCcchhHH
Q 013707          294 AGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQ  373 (438)
Q Consensus       294 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  373 (438)
                      +.++++ +..+++.||+++|+.+..+..+..+.+++..+.++.+......+.+++.+..+|..++...+..|+ +.+++.
T Consensus       307 ~~~vG~-~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as  384 (438)
T PRK10133        307 CFFIGR-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGS  384 (438)
T ss_pred             HHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccch
Confidence            999999 888999999999999888887777766666555544333446788999999999999999998874 567888


Q ss_pred             HHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          374 GCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       374 g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      ++.. ....|+.++|.+.|.+.|..
T Consensus       385 ~l~~-~~~~g~~~~~~i~G~l~~~~  408 (438)
T PRK10133        385 SFIV-MTIIGGGIVTPVMGFVSDAA  408 (438)
T ss_pred             hHHh-HHhccchHHHHHHHHHHHhc
Confidence            8776 45578999999999998863

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=7.3e-32  Score=256.38  Aligned_cols=366  Identities=13%  Similarity=0.079  Sum_probs=249.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHhhhhcchhhH
Q 013707           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI-SFFYAYYALRTLTAMVCEGSI  125 (438)
Q Consensus        47 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~  125 (438)
                      +.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.++.++. +.++.+.+.|++.|+ +.+..
T Consensus        57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~-~~g~~  135 (438)
T TIGR00712        57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGW-FQGMG  135 (438)
T ss_pred             CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH-Hhhcc
Confidence            6677889999999999999999999999999999999999999999988887765321 126778899999999 77888


Q ss_pred             hhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH-----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 013707          126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (438)
Q Consensus       126 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~  200 (438)
                      .+.....+.|++|+++|++++++.+...++|..++|.+.+.     .+||..|++.+++.++..+..++.+||++++.+.
T Consensus       136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~  215 (438)
T TIGR00712       136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL  215 (438)
T ss_pred             hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC
Confidence            88888999999999999999999999999998888765443     4899999999888877766777778887653221


Q ss_pred             CCCCcccchhccccccCCCCCCCCCccccccCCchhHH-HHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCC
Q 013707          201 DDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL-ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHF  279 (438)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  279 (438)
                      ++..     +.+++..++..+     +.+++ .+.++. .+...+++.++...+..++.........++.|.|+++..|+
T Consensus       216 ~~~~-----~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~  284 (438)
T TIGR00712       216 PPIE-----EYRNDYPDDYNE-----KAEQE-LTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHF  284 (438)
T ss_pred             CCch-----hccccccccccc-----ccccc-cchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCC
Confidence            1000     000000000000     00000 112221 22356778888877777777777778888999999998899


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH---HHHHHHhHhcc--cchHHHH-HHHHHhhhhhhH
Q 013707          280 NKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA---CINMFICSISW--SAWVPYA-TTAFSVLVVFAT  353 (438)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~  353 (438)
                      ++.+.++......+.++++. ++.+++.||+++++....+....   .++.+.+...+  +.+.... .+..+.+.....
T Consensus       285 s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  363 (438)
T TIGR00712       285 ALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPV  363 (438)
T ss_pred             ChhhHHHHHHHHHHHHHHHH-HHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHH
Confidence            99999999988989999988 88899999996433222222211   12222222221  2222222 223333222222


Q ss_pred             HHHHHHHhhcCCCCcchhHHHHHhhHhhhhh-hhhhHhHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 013707          354 PSFRSIVSKQVGPNEQGKAQGCISGISSFAN-IVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSFY  432 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (438)
                      ........|..|+++||++.|+.+...++++ .++|.+.|.+.|+.+        ....+.+.+++.+++.+......++
T Consensus       364 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~  435 (438)
T TIGR00712       364 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG--------WDGGFMVMIGGSILAVILLIVVMIG  435 (438)
T ss_pred             HHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc--------chHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2223456788999999999999999988874 689999999999742        1223333344444455555544444


Q ss_pred             h
Q 013707          433 V  433 (438)
Q Consensus       433 ~  433 (438)
                      +
T Consensus       436 ~  436 (438)
T TIGR00712       436 E  436 (438)
T ss_pred             c
Confidence            4

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=6.4e-32  Score=256.43  Aligned_cols=357  Identities=13%  Similarity=0.049  Sum_probs=243.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHH-HHHHHHHHHHHHHhhhhcccccccCcchH
Q 013707            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSG-FQQAIIGLGTLVMMPVIGNLSDQYGRKAM   83 (438)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g-~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~   83 (438)
                      .|++....++++.+++.++...+.+..|.+.+|+ +.+..+  ......+ .......+...+++++.|+++||+|||++
T Consensus        12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~-~~~~~~--~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~   88 (434)
T PRK15075         12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTF-FPAGNE--FASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKG   88 (434)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHH
Confidence            3455677788999999999999999999888765 222212  1111101 12223344456788999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhcccchhHH--------HHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHh
Q 013707           84 LTLPLTLSIIPLAILAYRRSISFFY--------AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA  155 (438)
Q Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  155 (438)
                      ++.+..+..++.++++++++   ++        .+++.|+++|+ +.+...+....+++|++|+++|++++++.+...++
T Consensus        89 l~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~  164 (434)
T PRK15075         89 LIVTLSIMASGTLLIAFVPG---YATIGLAAPLLVLLGRLLQGF-SAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQV  164 (434)
T ss_pred             HHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHhhc-cccccHHHHHHHHHhhCCcccchHHHHHHHHHHHH
Confidence            99999999999999999998   54        46899999999 88888888899999999999999999999888877


Q ss_pred             hhhhhHhhhHH------------hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCC
Q 013707          156 SFVCGTLAARF------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSP  223 (438)
Q Consensus       156 g~~~g~~l~~~------------~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (438)
                      |..+|+.++..            ++||++|++..... ..........||+++..+++                  +   
T Consensus       165 g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~-~~~~~~~~~~~e~~~~~~~~------------------~---  222 (434)
T PRK15075        165 AVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIV-PFIFLIRRSLEETEEFLARK------------------H---  222 (434)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHH-HHHHHHHHhcCCCHHHHHhh------------------h---
Confidence            77766665543            48999999754432 11111111222221000000                  0   


Q ss_pred             CCccccccCCchhHHHHhhcccchhHH-HHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 013707          224 VKIPVCKKIPSIRDLICLLRSSVTLSQ-AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF  302 (438)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  302 (438)
                        +      .+.++.++...+++..+. .....++..........+.|.|+++.+|+++.+.++......++.+++. ++
T Consensus       223 --~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~  293 (434)
T PRK15075        223 --R------PSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWL-PI  293 (434)
T ss_pred             --c------cccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HH
Confidence              0      001111222223333332 2333334445566778889999998889999998888888888888888 88


Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHH-Hh-Hhcc--cchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHh
Q 013707          303 MPLLAPILGEAKLLSLGLFAACINMF-IC-SISW--SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCIS  377 (438)
Q Consensus       303 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~  377 (438)
                      .|+++||++||+....+..+..+... .. ....  +...... ..+.+++.+...+....+..|.+|++.|+++.|+.+
T Consensus       294 ~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~  373 (434)
T PRK15075        294 GGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAY  373 (434)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHH
Confidence            89999999999987766544432221 11 1112  2222222 344456666666777788899999999999999875


Q ss_pred             hHhh-hhhhhhhHhHHHHHHHHh
Q 013707          378 GISS-FANIVSPLIFSPLTALFL  399 (438)
Q Consensus       378 ~~~~-~g~~~g~~~~g~l~~~~~  399 (438)
                      .... +++.++|.+.|.+.|+.+
T Consensus       374 ~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        374 SLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhcC
Confidence            5554 458889999999999753

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=5.4e-33  Score=268.37  Aligned_cols=378  Identities=15%  Similarity=0.081  Sum_probs=258.3

Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHH
Q 013707           16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPL   95 (438)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~   95 (438)
                      ..++..++.....+.+|....+.......+.+.+..+.|++.+++.++..++++++|+++||+|||+++..+.++.+++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~  115 (481)
T TIGR00879        36 GGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGA  115 (481)
T ss_pred             HHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHH
Confidence            33445556677777888777654222222334667889999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhh---HH----hh
Q 013707           96 AILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA---RF----LS  168 (438)
Q Consensus        96 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~---~~----~~  168 (438)
                      +++.+.++...++.+++.|+++|+ +.+...+...+++.|++|+++|++++++.+....+|..+++.++   ..    .+
T Consensus       116 ~~~~~~~~~~~~~~~~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~  194 (481)
T TIGR00879       116 ILMGLAAFALSVEMLIVGRVLLGI-GVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG  194 (481)
T ss_pred             HHHHHhccccchHHHHHHHHHHHh-hhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Confidence            988766553336789999999999 88999899999999999999999999999999999999999998   33    48


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCc-----------cccccCCchhH
Q 013707          169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKI-----------PVCKKIPSIRD  237 (438)
Q Consensus       169 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~  237 (438)
                      ||+.|++.++..++ .+...+++||+++....+++.++..+...+....++++....+           ........+++
T Consensus       195 w~~~f~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (481)
T TIGR00879       195 WRIPLGLQLIPAGL-LFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGS  273 (481)
T ss_pred             HHHHHHHHHHHHHH-HHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHH
Confidence            99999996665444 3445567888764321111111111110000000000000000           00000111222


Q ss_pred             HHHhhc--ccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 013707          238 LICLLR--SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (438)
Q Consensus       238 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  315 (438)
                      .++..+  +++.++...+..+...........+.|.+.++ .|++..+.+.......++.+++. ++.+++.||+++|+.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~~~~~~  351 (481)
T TIGR00879       274 LFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFT-FVAIFLVDRFGRRPL  351 (481)
T ss_pred             HHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHhcchHH
Confidence            222111  12223333333333333444455666666655 79999888888888888888888 888999999999999


Q ss_pred             HHHHHHHHHHHHHHhHh---cc-c------chHH-HHHHHHHhhhh-hhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhh
Q 013707          316 LSLGLFAACINMFICSI---SW-S------AWVP-YATTAFSVLVV-FATPSFRSIVSKQVGPNEQGKAQGCISGISSFA  383 (438)
Q Consensus       316 ~~~~~~~~~~~~~~~~~---~~-~------~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  383 (438)
                      +..+..+.+++++.+.+   .. +      .+.. ....+...+.+ ...+....+..|.+|+++|+++.|+.+...+++
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg  431 (481)
T TIGR00879       352 LLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLA  431 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHH
Confidence            98888888777766652   11 1      1111 22223332322 234666777799999999999999999999999


Q ss_pred             hhhhhHhHHHHHHH
Q 013707          384 NIVSPLIFSPLTAL  397 (438)
Q Consensus       384 ~~~g~~~~g~l~~~  397 (438)
                      .+++|.+.+.+.++
T Consensus       432 ~~i~~~~~~~~~~~  445 (481)
T TIGR00879       432 NFIVGFLFPTMLES  445 (481)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999886

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK15011 sugar efflux transporter B; Provisional

Probab=100.00  E-value=1.3e-31  Score=251.14  Aligned_cols=371  Identities=13%  Similarity=0.103  Sum_probs=256.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHh
Q 013707            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (438)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l   84 (438)
                      ..++....+++..++..++.++..|.+|.+..+       +++.+..+.|++.+...+...+.+++.|.++||+||||.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~-------~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~   84 (393)
T PRK15011         12 SFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTD-------EVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSL   84 (393)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHH
Confidence            334566777888999999999999999998754       5577778899998776564444444555459999999875


Q ss_pred             -HHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccch--hHHHHHHHHHHHhhhhhhH
Q 013707           85 -TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQR--ASAFGILLGVLSASFVCGT  161 (438)
Q Consensus        85 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~~g~  161 (438)
                       ..+.+..+++..+.+++++   ++.+++.+.+.|. ..+...|...+++.|+.++++|  +...+..++..++|.++||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~  160 (393)
T PRK15011         85 IVFCCLLGVLACTLFAWNRN---YFVLLFVGVFLSS-FGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGP  160 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhh
Confidence             4556666677777888888   7776666555554 3456778889999998877655  3445788889999999999


Q ss_pred             hhhHH----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhH
Q 013707          162 LAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (438)
Q Consensus       162 ~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (438)
                      .+++.    +|||..|++.++..++..+..++.+||++++++++.               + +     .+      ..+ 
T Consensus       161 ~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~-----~~------~~~-  212 (393)
T PRK15011        161 PLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT---------------G-T-----LE------APR-  212 (393)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc---------------c-c-----cc------ccc-
Confidence            98876    499999999988877776666777887653322110               0 0     00      000 


Q ss_pred             HHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q 013707          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS  317 (438)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  317 (438)
                           ++++..+......+...........+.|.|+++.+|+++.+.+.+.+......+++. ++.|+++||+++|+.+.
T Consensus       213 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~-~~~G~l~dr~g~~~~~~  286 (393)
T PRK15011        213 -----RNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTM-LIAGYFAKRLGKRFLMR  286 (393)
T ss_pred             -----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHHHH
Confidence                 011222222333333334445556788999988899999999988877777777777 88899999999999877


Q ss_pred             HHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          318 LGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      .+.....+.+......++.+.... ..+.+++.+...+....+.+|..| +++|++.++++...++|..++|.+.|.+.|
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~  365 (393)
T PRK15011        287 VAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAE  365 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776655555444444444443333 344455555555666677788887 569999999999999999999999999998


Q ss_pred             HHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 013707          397 LFLSKGAPFNFPGFSIMCIGLASVRAFTYELLL  429 (438)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (438)
                      +.+        ....+.+.+++.+++....++.
T Consensus       366 ~~g--------~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        366 IWN--------YHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             Hhh--------hHHHHHHHHHHHHHHHHHHHhh
Confidence            632        2223444555555555555544

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=2.5e-31  Score=250.14  Aligned_cols=342  Identities=13%  Similarity=0.096  Sum_probs=254.0

Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHH
Q 013707           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII   93 (438)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~   93 (438)
                      .+..+...++..++.|.+|.+.+        +++.+..+.++..+++.++..++++++|+++||+|||+++..+.++.++
T Consensus        22 ~~~~~~~~~~~~~~~p~l~~i~~--------~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~   93 (413)
T PRK15403         22 ILYDFAAYLTTDLIQPGIINVVR--------DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL   93 (413)
T ss_pred             HHHHHHHHHHHHhhccCHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH
Confidence            34445566677899999998865        4456667789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH----hhH
Q 013707           94 PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LST  169 (438)
Q Consensus        94 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w  169 (438)
                      +.+++.++++   ++.++++|+++|+ +.+...+...+++.|++|+++|++++++......+|..+||.+++.    .+|
T Consensus        94 ~~~~~~~a~~---~~~l~~~r~l~Gi-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw  169 (413)
T PRK15403         94 ACAATLFTTS---MTQFLIARFIQGT-SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHW  169 (413)
T ss_pred             HHHHHHHcCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            9999999999   9999999999999 7777667788899999999999999999999999999999988875    389


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhH
Q 013707          170 TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLS  249 (438)
Q Consensus       170 ~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (438)
                      |+.|++.+++.++..+..++.+||++++++++                         .  ......++ .+...++|.++
T Consensus       170 ~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~-------------------------~--~~~~~~~~-~~~ll~~~~~~  221 (413)
T PRK15403        170 KVLFAIIAVMGLIAFVGLLLAMPETVKRGAVP-------------------------F--SAKSVLRD-FRNVFRNRLFL  221 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCccccCCC-------------------------C--ChHHHHHH-HHHHHcCHHHH
Confidence            99999999887777666566778865321110                         0  00011222 33455678888


Q ss_pred             HHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 013707          250 QAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFI  329 (438)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  329 (438)
                      ...+..++..........+.|.++++.+|.++.+.++.......+..++. .+.+++.++..+++.......+..++..+
T Consensus       222 ~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~-~l~~~~~~~~~~~~~~~~~~~~~~ig~~l  300 (413)
T PRK15403        222 TGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVAN-AIVARFVKDPTEPRFIWRAVPIQLVGLAL  300 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence            87777777777777777888999999899999999998877777777777 45555554433333322222222222222


Q ss_pred             hHh----cccch-HHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          330 CSI----SWSAW-VPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       330 ~~~----~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      +..    ..+.+ ..+. .++.+++.+...|...+..-. -.+..+|++.++.+.....+...++...+++.++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~  373 (413)
T PRK15403        301 LIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN  373 (413)
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            211    22322 2223 566778888888877754322 2233579999999999999999999999988776

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=3.1e-32  Score=263.15  Aligned_cols=382  Identities=13%  Similarity=0.107  Sum_probs=256.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHH
Q 013707            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (438)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (438)
                      ......++.+.+.++.+......|.+..+..   .++...+..+.+++.+...++..+++++.|+++||+|||+++..+.
T Consensus        17 ~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~   93 (502)
T TIGR00887        17 AIVIAGVGFFTDSYDLFCISLVTKMLGYVYY---HGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMEL   93 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            3445566777888888888888887655421   1133455667899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccch---hHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhH
Q 013707           89 TLSIIPLAILAYRRSIS---FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (438)
Q Consensus        89 ~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~  165 (438)
                      ++..++.++++++++..   .++.+++.|+++|+ +.+...+....++.|++|+++|++++++.+....+|..+|+.++.
T Consensus        94 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~-~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~  172 (502)
T TIGR00887        94 IIMIIATVASGLSPGSSPKSVMATLCFWRFWLGV-GIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL  172 (502)
T ss_pred             HHHHHHHHHHHHccCcccchHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888876421   15789999999999 889999999999999999999999999999999999988887654


Q ss_pred             H---------------------------hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC---CC-CCCcccchhcccc
Q 013707          166 F---------------------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDD---DD-DLTRPIITEETEG  214 (438)
Q Consensus       166 ~---------------------------~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~  214 (438)
                      .                           .+||++|.+.++..++. .+..+++||+|+...   ++ +++++..++..+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~-~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~  251 (502)
T TIGR00887       173 IVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLA-LYFRLTIPETPRYTADVAKDVEQAASDMSAVLQV  251 (502)
T ss_pred             HHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHH-HHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcc
Confidence            2                           26999998887776544 444678999998522   21 1122222221111


Q ss_pred             ccCCCCCC-CC-CccccccCCchhHHHHhhcccchhHHH---HHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHH---
Q 013707          215 VNQNESNS-PV-KIPVCKKIPSIRDLICLLRSSVTLSQA---AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFAD---  286 (438)
Q Consensus       215 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---  286 (438)
                      +.+++.++ .. ++.++..+.++++.++...+++.....   ....+...+.+++...+.|.++++ .|+++.+.+.   
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~  330 (502)
T TIGR00887       252 KIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAY  330 (502)
T ss_pred             ccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH-HcCCCCccchhHH
Confidence            11111100 00 000011112455544322222222211   122233334455566677888866 5876542211   


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhccc----chHHHHHHH-HHhhhhhh
Q 013707          287 ---------LMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWS----AWVPYATTA-FSVLVVFA  352 (438)
Q Consensus       287 ---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~  352 (438)
                               ......++.+++. ++.+++.||+|||+.+..+..+..++..++....+    ........+ ..++....
T Consensus       331 ~~~~~~~~~~~~~~~~~~i~g~-~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (502)
T TIGR00887       331 EELYKTAVGNLIIALAGTVPGY-WVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGP  409 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCC
Confidence                     1222333444555 77889999999999988888777776665554321    111111111 12222234


Q ss_pred             HHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          353 TPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       353 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      .+..+.+..|.+|++.|+++.|+.+....++++++|.+.+.+.+.
T Consensus       410 ~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~  454 (502)
T TIGR00887       410 NATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH  454 (502)
T ss_pred             CchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence            456777889999999999999999999999999999999999874

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=100.00  E-value=3e-31  Score=249.10  Aligned_cols=344  Identities=16%  Similarity=0.132  Sum_probs=258.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHH
Q 013707            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (438)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (438)
                      |.+.......+....+.....+.+|.+.+        +++.+..+.++..+.+.++..+++++.|+++||+|||+.+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~--------~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~   74 (392)
T PRK10473          3 RFLLCSFALVLLYPAGIDMYLVGLPRIAA--------DLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPG   74 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHH
Confidence            45666777788888888888999999876        4466677889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh
Q 013707           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (438)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~  167 (438)
                      .++.+++...+.++++   ++.+++.|+++|+ +.+...+...+++.|.+|+++|+++++..+....+|..++|.+++.+
T Consensus        75 ~~~~~i~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l  150 (392)
T PRK10473         75 AALFIIASLLCSLAET---SSLFLAGRFLQGI-GAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI  150 (392)
T ss_pred             HHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998   8889999999999 88888888999999999999999999999999999999999888763


Q ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhc
Q 013707          168 ----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR  243 (438)
Q Consensus       168 ----~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (438)
                          +||+.|++.+.+.++..+.....+||++++++++                         + .   ...++..+ ..
T Consensus       151 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------------------------~-~---~~~~~~~~-~~  200 (392)
T PRK10473        151 MLKFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPA-------------------------A-S---SKPRENSE-SL  200 (392)
T ss_pred             HhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCC-------------------------c-c---chHHHHHH-HH
Confidence                8999999998887777666667777764332110                         0 0   00111112 23


Q ss_pred             ccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 013707          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (438)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (438)
                      +++.++...+...+..........+.|.+.++.+|+++.+.+...+..+++.+++. +..+++.||+++|+.+..+..+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~-~~~~~l~~r~g~~~~~~~~~~~~  279 (392)
T PRK10473        201 LNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVS-FSTPFALGIFKPRTLMLTSQVLF  279 (392)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHH
Confidence            44544444444333333344455666888888889999999999999999999988 88899999999999999888888


Q ss_pred             HHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHh
Q 013707          324 CINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFL  399 (438)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  399 (438)
                      .++.+.+...++.+.... ..+.+.+.+...+..  ...+..|.++|+   |.......+++.+++.+.+++.++.+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g  351 (392)
T PRK10473        280 LAAGITLALSPSHAVSLFGITLICAGFSVGFGVA--MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLG  351 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            887777766655443222 334344444433333  223344554443   44445566777888888888888753

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=100.00  E-value=1.3e-31  Score=250.09  Aligned_cols=362  Identities=12%  Similarity=-0.015  Sum_probs=274.5

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHH-H
Q 013707           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL-T   89 (438)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~-~   89 (438)
                      +.+.+..+...++.++..|.+|.+.+        |.+.+..+.|++.+.+.+...++++++|+++||+|||+...... .
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~--------~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~   78 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLK--------GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLAL   78 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            44667778888889999999999986        45777899999999999999999999999999999854332211 1


Q ss_pred             HHHHHH-HHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh-
Q 013707           90 LSIIPL-AILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (438)
Q Consensus        90 ~~~~~~-~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-  167 (438)
                      ...+.. ..+..+++   ++.+++.|.++|. +.+...|...++..|+  +++|++.+|......++|.++||.+++.+ 
T Consensus        79 ~~~l~~~~~~~~~~~---~~~l~~~~~l~~~-~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~  152 (382)
T TIGR00902        79 ASAIFAAAFSAGAHN---AWLLFIAIGLFAL-FFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLI  152 (382)
T ss_pred             HHHHHHHHHHHhhhh---HHHHHHHHHHHHH-HHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            111111 23345677   8999999999998 6666778888887765  47889999999999999999999988764 


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcc
Q 013707          168 ---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS  244 (438)
Q Consensus       168 ---~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (438)
                         |||..|++..... +..+. .+.++|+++++++++                  +     ++.+   +.++ .+...|
T Consensus       153 ~~~g~~~~f~~~~~~~-~~~~~-~~~~~~~~~~~~~~~------------------~-----~~~~---~~~~-~~~~l~  203 (382)
T TIGR00902       153 GMFDEQNILAILTAGL-AFMLI-GFLIKPTIPPKDAIP------------------E-----DESQ---GDSA-FIALLK  203 (382)
T ss_pred             HHcChhHHHHHHHHHH-HHHHH-HHHcCCCCCCCcccc------------------c-----cccc---cchh-HHHHHc
Confidence               8999998876553 22222 333444322111110                  0     0000   1112 223556


Q ss_pred             cchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 013707          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (438)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  324 (438)
                      +|.++...+..++.........++.|.|+++ .|.++.+.|.......+..++.. ...+++.||+++|+.+..+.+...
T Consensus       204 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~-~~~~~l~~r~g~~~~l~~~~~~~~  281 (382)
T TIGR00902       204 NPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIF-AFSNKLFQNCSARDLLLISAIACV  281 (382)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHH-HHhHHHHhhCCHHHHHHHHHHHHH
Confidence            7888888888888888888899999999987 79999999999998777777776 888999999999999999999999


Q ss_pred             HHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhh-HhhhhhhhhhHhHHHHHHHHhcCC
Q 013707          325 INMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISG-ISSFANIVSPLIFSPLTALFLSKG  402 (438)
Q Consensus       325 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~g~~~g~~~~g~l~~~~~~~~  402 (438)
                      +....+.+.++.+..+. ..+.++..+...+....++++. |++++++.+++++. ...+|..++|.++|.++|+.+   
T Consensus       282 ~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g---  357 (382)
T TIGR00902       282 GRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG---  357 (382)
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence            99999888888776665 7888999999999999999987 99999999999874 568999999999999999842   


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH
Q 013707          403 APFNFPGFSIMCIGLASVRAFTYEL  427 (438)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~  427 (438)
                            ...+...+++.+++..+..
T Consensus       358 ------~~~~~~~~~~~~~~~~~~~  376 (382)
T TIGR00902       358 ------AGTFVFMAIIAAAAFFLIP  376 (382)
T ss_pred             ------HHHHHHHHHHHHHHHHHHH
Confidence                  1234445555555544433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.3e-32  Score=238.39  Aligned_cols=375  Identities=15%  Similarity=0.094  Sum_probs=304.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      +|+++.-.+...+.++...+..|+.+.+        .+|+++|+.|.+++.++..+...+..++.|.+.||+|.|++...
T Consensus        13 ~~~L~~S~~af~v~F~VW~l~s~l~~~i--------~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~   84 (417)
T COG2223          13 RRNLWLSTLAFDVGFMVWTLFSPLGVFI--------KSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTIL   84 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhh--------ccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHH
Confidence            5667777777777777888888888777        45889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhh----hhhHh
Q 013707           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASF----VCGTL  162 (438)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~----~~g~~  162 (438)
                      +.++..+-++..+++...+.++++++.+++.|+ + |....+...++++++|||++|.++|+.. ..|+|.    .++|.
T Consensus        85 s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~-~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~  161 (417)
T COG2223          85 SMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGL-A-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPL  161 (417)
T ss_pred             HHHHHHHHHHHHHHHccCCchHHHHHHHHHHhc-c-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHH
Confidence            999999999999999775556799999999999 5 4445689999999999999999999998 666665    45677


Q ss_pred             hhHHhh---HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchh-HH
Q 013707          163 AARFLS---TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR-DL  238 (438)
Q Consensus       163 l~~~~~---w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  238 (438)
                      +....+   |+..-.+..+..++..+..++.+.|.|+.+...+                               +.+ ..
T Consensus       162 v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~-------------------------------~~~~~~  210 (417)
T COG2223         162 VAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVK-------------------------------PQLPAQ  210 (417)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccc-------------------------------ccchhH
Confidence            777777   9999888888877878888888888876433220                               111 33


Q ss_pred             HHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 013707          239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSL  318 (438)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  318 (438)
                      ++..+++++.|...+.++....++.++..++|.|+++++|.++.++|.......+.+.+.+ .++|+++||+|.++.+..
T Consensus       211 ~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~R-p~GG~LsDR~Gg~rv~~~  289 (417)
T COG2223         211 LKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALAR-PLGGWLSDRIGGRRVTLA  289 (417)
T ss_pred             HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHH-hccchhhhhccchhHHHH
Confidence            4457778999999999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHHHHHHHhHhcc-------cchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHh
Q 013707          319 GLFAACINMFICSISW-------SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLI  390 (438)
Q Consensus       319 ~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~  390 (438)
                      .+..++++..+..+..       +.+.... ....+++.+......+.++..++| ++.|.+.|+...++.+|+..-|..
T Consensus       290 ~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~  368 (417)
T COG2223         290 VFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLA  368 (417)
T ss_pred             HHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHH
Confidence            9988888888877764       2222233 345566677777777778887776 688999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 013707          391 FSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSFY  432 (438)
Q Consensus       391 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (438)
                      .|..++.+++       ....+.+...+.+++.+..+..+.+
T Consensus       369 ~g~~~~~tg~-------~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         369 FGVSLDLTGS-------YTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             HHHHHHhccc-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998542       1223444445555555555544444

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=1.3e-31  Score=259.54  Aligned_cols=377  Identities=14%  Similarity=0.173  Sum_probs=259.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      ++.+..+++..+++.++.....+.+|.+.+        +++.+..+.+++.+.+.++..+++++.|+++||+|||+.+..
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   90 (496)
T PRK03893         19 WKAFSAAWLGYLLDGFDFVLITLVLTEVQG--------EFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVI   90 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            346667788888889999999999988865        456777888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH
Q 013707           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (438)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (438)
                      +.++.+++.++.+++++   ++.+++.|++.|+ +.+...+...+++.|.+|+++|+++++.......+|..++|.+++.
T Consensus        91 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  166 (496)
T PRK03893         91 SIVLFSVGTLACGFAPG---YWTLFIARLVIGM-GMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSL  166 (496)
T ss_pred             HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998   8999999999999 8888888999999999999999999999999999999999988876


Q ss_pred             h----hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCC------------ccccc
Q 013707          167 L----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVK------------IPVCK  230 (438)
Q Consensus       167 ~----~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~  230 (438)
                      +    +||+.|++..... +..+......||+++.++++++..+..+ ..+.....+.+....            .....
T Consensus       167 l~~~~~w~~~f~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (496)
T PRK03893        167 VVPVWGWRALFFIGILPI-IFALWLRKNLPEAEDWKEKHAGKAPVRT-MVDILYRGEHRIINILLTLAAAAALWFCFAGN  244 (496)
T ss_pred             HhccCCHHHHHHHHHHHH-HHHHHHHHhCCCchhhhhhccccccchh-HHHHHhcchhHHHHHHHHHHHHHHHHHHHHhh
Confidence            4    8999998754443 2223333445554332111100000000 000000000000000            00000


Q ss_pred             cCCchh-------------HHHHh--hcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHH
Q 013707          231 KIPSIR-------------DLICL--LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAG  295 (438)
Q Consensus       231 ~~~~~~-------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  295 (438)
                      ....+.             .....  ..+.+.........+...........++|.|+++.+|+++.+.+.+.+...++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~  324 (496)
T PRK03893        245 LQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGA  324 (496)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence            000000             00000  000111111111111111222235678999998778999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccc--hHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhH
Q 013707          296 TISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSA--WVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKA  372 (438)
Q Consensus       296 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  372 (438)
                      +++. ++.++++||+++|+.+..+..+..+..+......+.  +.... ..+.+.......+...+++++.+|+++||++
T Consensus       325 ~~g~-~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  403 (496)
T PRK03893        325 AVGC-CVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAG  403 (496)
T ss_pred             HHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcc
Confidence            9988 888999999999998887776666555444333222  22222 2222222333345667788999999999999


Q ss_pred             HHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          373 QGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       373 ~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      +|+.+....+|..+||.+.|.+.|.+
T Consensus       404 ~~~~~~~~~~g~~lgp~l~g~l~~~~  429 (496)
T PRK03893        404 LGFTYNVGALGGALAPILGALIAQRL  429 (496)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHhccC
Confidence            99999999999999999999998863

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=8e-32  Score=256.51  Aligned_cols=342  Identities=11%  Similarity=0.049  Sum_probs=248.7

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHH-HHHhhhhcchh
Q 013707           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYA-LRTLTAMVCEG  123 (438)
Q Consensus        45 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~~  123 (438)
                      +++.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++..+++++++++++   ++.+++ .|+++|+ +.+
T Consensus        48 ~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~l~G~-~~~  123 (455)
T TIGR00892        48 IFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSN---VIELYLTAGFITGL-GLA  123 (455)
T ss_pred             HhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHh-cch
Confidence            66777788899999999999999999999999999999999999999999999999988   777654 5789999 777


Q ss_pred             hHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 013707          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDD  199 (438)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~  199 (438)
                      ...+...+++.|+++ ++|+++.++.+.+..+|..++|.+++.    .|||++|++.+++.++..+..++..|+.+.++.
T Consensus       124 ~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~  202 (455)
T TIGR00892       124 FNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRV  202 (455)
T ss_pred             hhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence            666677788899986 789999999999999999988887765    489999999998876655444444333221111


Q ss_pred             CCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCC
Q 013707          200 DDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHF  279 (438)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  279 (438)
                      .+.+.+   +..+ +....  ++...+...++..+..+ ++ ..++|.++......++..........++|.|.++ .|+
T Consensus       203 ~~~~~~---~~~~-~~~~~--~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~  273 (455)
T TIGR00892       203 SKSKSK---EGLP-PDGST--KKLSKKSTAEKINRFLD-FS-LFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGV  273 (455)
T ss_pred             cccccc---ccCC-CCCcc--ccccccchhhhhhhhcc-hH-HhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCC
Confidence            000000   0000 00000  00000000000001111 12 4466778877777777777777888899999987 699


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--chhhHHH--HHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHH
Q 013707          280 NKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEAKLLS--LGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATP  354 (438)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  354 (438)
                      ++.+.+.+.+..+++.++++ +..+++.||.  ++++...  .+.+..+++.++....++.+..+. .++.|++.+...+
T Consensus       274 s~~~~g~~~~~~~~~~~~~~-~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~  352 (455)
T TIGR00892       274 DEYEAAFLLSIIGFVDIFAR-PSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGA  352 (455)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-HHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHH
Confidence            99999999999999999888 7888999873  3333322  333444444445555556555444 6777888888889


Q ss_pred             HHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcC
Q 013707          355 SFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSK  401 (438)
Q Consensus       355 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~  401 (438)
                      ...+.+.|.+|+++++++.|+++...++|+.+||.++|.+.|..+++
T Consensus       353 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~  399 (455)
T TIGR00892       353 LLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNY  399 (455)
T ss_pred             HHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCc
Confidence            99999999999999999999999999999999999999999875433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=1.8e-31  Score=255.46  Aligned_cols=347  Identities=13%  Similarity=0.068  Sum_probs=238.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      .+.+...+...+...++.....|.+|.+.+        +++++..+.|++.+.+.+++.+++++.|+++||+|||+++..
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~  106 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRD--------NLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAF  106 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            344555556666666666677788887755        556777888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhH-
Q 013707           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR-  165 (438)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~-  165 (438)
                      +.++.+++.++.+++++   ++.+++.|++.|+ +.+... ....+++|++|+++|++++++.....++|..+++.+.. 
T Consensus       107 ~~~~~~~~~~~~~~~~s---~~~l~~~r~l~G~-~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~  181 (476)
T PLN00028        107 LLMLTAPAVFCMSLVSS---ATGFIAVRFFIGF-SLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPL  181 (476)
T ss_pred             HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHH-HHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998   8889999999999 666543 45678999999999999999998766666666543332 


Q ss_pred             ------------HhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCC
Q 013707          166 ------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIP  233 (438)
Q Consensus       166 ------------~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (438)
                                  ..+||+.|++.+++.++..+..++..++.|+.+ .+    +   .     .++.      +.   ++.
T Consensus       182 i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~-~~----~---~-----~~~~------~~---~~~  239 (476)
T PLN00028        182 VFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGN-YR----E---L-----KKSG------TM---PKD  239 (476)
T ss_pred             HHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCc-hh----h---H-----HhcC------cc---ccc
Confidence                        138999999999887766555544433333211 00    0   0     0000      00   001


Q ss_pred             chhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 013707          234 SIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEA  313 (438)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  313 (438)
                      +..+.++...+++..+...+..++..........+.|.|+.+.+|+++.+.+.+.+...++..+++ ++.|+++||+++|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~-~~~G~lsDr~~~r  318 (476)
T PLN00028        240 SFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFAR-PAGGYLSDVAARR  318 (476)
T ss_pred             cHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHh
Confidence            111222333455666665555555555555667788999988889999999999999999999999 8889999999865


Q ss_pred             -------hHHHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhh
Q 013707          314 -------KLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANI  385 (438)
Q Consensus       314 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~  385 (438)
                             ........+.++..+.+...++.+.... +.+.+++.+...+...++..+.. ++++|++.|+.+....+|..
T Consensus       319 ~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~  397 (476)
T PLN00028        319 FGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAV  397 (476)
T ss_pred             cCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHH
Confidence                   2233333333333344444444333332 44555555555555666666654 47899999998776665555


Q ss_pred             hhhHh
Q 013707          386 VSPLI  390 (438)
Q Consensus       386 ~g~~~  390 (438)
                      ++|.+
T Consensus       398 i~~~l  402 (476)
T PLN00028        398 LTQLL  402 (476)
T ss_pred             HHHHH
Confidence            55544

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=2.5e-32  Score=265.00  Aligned_cols=364  Identities=17%  Similarity=0.152  Sum_probs=258.4

Q ss_pred             Cccchhh---HHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhh
Q 013707           43 LDECSLA---IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAM  119 (438)
Q Consensus        43 ~~~~~~s---~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  119 (438)
                      .+|++++   ..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++.+++++   ++.+++.|++.|+
T Consensus       116 ~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~r~l~G~  192 (505)
T TIGR00898       116 VTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN---YTVFLVFRLLVGM  192 (505)
T ss_pred             EEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHh
Confidence            4567777   788999999999999999999999999999999999999999999999999999   9999999999999


Q ss_pred             cchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh-hHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 013707          120 VCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-STTSAFQAATIVSMLAAAYMRVFLKDDVPND  198 (438)
Q Consensus       120 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~  198 (438)
                       +.+...+...+++.|++|+++|+++.++.+.+..+|.+++|.++..+ +||+.|++.+++.++..+. .+++||+|+..
T Consensus       193 -~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~-~~~~~esp~~l  270 (505)
T TIGR00898       193 -GIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLL-SWFVPESPRWL  270 (505)
T ss_pred             -hccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHhcCCChHHH
Confidence             88888899999999999999999999999999999999999988765 7999999998887665544 47789988643


Q ss_pred             CCCCCCccc---chhccccccCCCCCC------CCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHH
Q 013707          199 DDDDLTRPI---ITEETEGVNQNESNS------PVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASF  269 (438)
Q Consensus       199 ~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (438)
                      ..+++.++.   .++..+.+..+..++      ..++...+++.+.+    .++++|.++...+......+.........
T Consensus       271 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (505)
T TIGR00898       271 ISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFL----DLFRTPNLRKTTLCLMMLWFTTAFSYYGL  346 (505)
T ss_pred             HHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHH----HHhCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222211   111111111000000      00000001111222    35566666666555544444433333334


Q ss_pred             HHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccc--hHHHH-HHHHH
Q 013707          270 LYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSA--WVPYA-TTAFS  346 (438)
Q Consensus       270 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~  346 (438)
                      +.+..+ ++.+....   ....++..+++. ++.+++.||+|||+.+..+.++.+++++++.+.++.  +.... ..+.+
T Consensus       347 ~~~~~~-~~~~~~~~---~~~~~~~~i~~~-~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  421 (505)
T TIGR00898       347 VLDLGN-LGGNIYLD---LFISGLVELPAK-LITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGK  421 (505)
T ss_pred             hccccc-cCCChHHH---HHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            444433 45554332   334455666666 778899999999999999998888888777766543  33333 44556


Q ss_pred             hhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHH
Q 013707          347 VLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYE  426 (438)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (438)
                      ++.....+..+.+..|.+|++.|+++.|+.+....+|++++|.+.+ +.+.         ....++.+.+++.+++.+..
T Consensus       422 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~---------~~~~~~~~~~~~~~~~~~~~  491 (505)
T TIGR00898       422 FGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK---------WLFLPLVLFGGLALLAGILT  491 (505)
T ss_pred             HHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH---------HHhhHHHHHHHHHHHHHHHH
Confidence            6667777888999999999999999999999999999999999988 4332         12233444555555554544


Q ss_pred             Hhhh
Q 013707          427 LLLS  430 (438)
Q Consensus       427 ~~~~  430 (438)
                      ..++
T Consensus       492 ~~lp  495 (505)
T TIGR00898       492 LFLP  495 (505)
T ss_pred             HcCc
Confidence            4444

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=2.9e-32  Score=261.57  Aligned_cols=369  Identities=11%  Similarity=0.051  Sum_probs=259.9

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHhhhhcch
Q 013707           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR--RSISFFYAYYALRTLTAMVCE  122 (438)
Q Consensus        45 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~r~l~G~~~~  122 (438)
                      |++.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++.++  .+   ++.+++.|+++|+ +.
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~~~G~-~~  145 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG---IALVVFCRVIQGL-AQ  145 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcC---chHHHHHHHHHHH-hc
Confidence            678899999999999999999999999999999999999999999998888877554  45   6789999999999 89


Q ss_pred             hhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh-----hHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 013707          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (438)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-----~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~  197 (438)
                      +...|....+++|++|+++|++++++...+..+|.+++|.+++.+     +||++|++.+++.++..+..+...||+|++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~  225 (465)
T TIGR00894       146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSI  225 (465)
T ss_pred             ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCccc
Confidence            999999999999999999999999999999999999999887653     899999999888776666555666666543


Q ss_pred             CCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHc
Q 013707          198 DDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF  277 (438)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (438)
                      +++.++.+  .+..++  . .+++    +.+.+...++++    ..+++.++...+..+..........+++|.|+++.+
T Consensus       226 ~~~~~~~~--~~~i~~--~-~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~  292 (465)
T TIGR00894       226 HPCISKFE--KKYINS--S-LQGQ----KGSTRQSLPIKA----IPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVL  292 (465)
T ss_pred             CCCCCHHH--HHHHHh--h-cccc----cCCCCCCCCHHH----HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            32211100  000000  0 0000    000111123333    567788888888888888888888999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhH--------HHHHHHHH--HHHHHHhHh-cccchHHHH-HHHH
Q 013707          278 HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL--------LSLGLFAA--CINMFICSI-SWSAWVPYA-TTAF  345 (438)
Q Consensus       278 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~--~~~~~~~~~-~~~~~~~~~-~~~~  345 (438)
                      |.+..+.++..+...++..++. ++.|+++||+++|+.        +..+....  .+..+.... ..+.+.... ..+.
T Consensus       293 g~s~~~~g~~~~~~~~~~~i~~-~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  371 (465)
T TIGR00894       293 RVSGKENGLLSSLPYLFAWLCS-IFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLA  371 (465)
T ss_pred             CcChHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            9999999999999999999988 888999998764421        11111111  111111222 222222222 3333


Q ss_pred             HhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHH
Q 013707          346 SVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTY  425 (438)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (438)
                      +.+.+...+.......+..| +.+|.+.|+.+....++..++|.+.|.+.+...  .   ......+.+.++..+++.+.
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~--~---~~~~~~f~~~~~~~~i~~i~  445 (465)
T TIGR00894       372 NAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDS--K---NVWLIVFLIMAFVNILCVIF  445 (465)
T ss_pred             HHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCC--c---hHHHHHHHHHHHHHHHHHHH
Confidence            44444444555555566666 589999999999999999999999998876411  0   01223455555556666555


Q ss_pred             HHhhhhhhccCC
Q 013707          426 ELLLSFYVFSRW  437 (438)
Q Consensus       426 ~~~~~~~~~~~~  437 (438)
                      .....+.+.++|
T Consensus       446 ~~~~~~~~~~~w  457 (465)
T TIGR00894       446 YLIFGSAERQDW  457 (465)
T ss_pred             eeeeecceecCC
Confidence            555444444444

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=100.00  E-value=5.9e-31  Score=246.03  Aligned_cols=329  Identities=14%  Similarity=0.168  Sum_probs=245.7

Q ss_pred             HhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHh
Q 013707           21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY  100 (438)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~  100 (438)
                      .++.++..|.+|.+.+        +++.+..+.|++.+++.++..+++++.|+++||+|||+++..+..+.+++...+.+
T Consensus         4 ~~~~~~~~p~~~~~~~--------~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~   75 (377)
T PRK11102          4 PLAIDMYLPALPVIAA--------DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL   75 (377)
T ss_pred             chHHHHHhccHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH
Confidence            3566788899999976        45677788999999999999999999999999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH----hhHHHHHHHH
Q 013707          101 RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAA  176 (438)
Q Consensus       101 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f~~~  176 (438)
                      +++   ++.+++.|+++|+ +.+...+...+++.|++|+++|++++++.+....+|..++|.+++.    .+||+.|++.
T Consensus        76 ~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  151 (377)
T PRK11102         76 AQT---IDQLIYMRFLHGL-AAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL  151 (377)
T ss_pred             Hcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence            998   8999999999999 8888888999999999999999999999999999999999988876    3899999998


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHH
Q 013707          177 TIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAF  256 (438)
Q Consensus       177 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (438)
                      +.+.++..+...+.+||++++++++                          +.+.++..++ .+...++|..+...+..+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  204 (377)
T PRK11102        152 ALAAILAAALVFFFIPETLPKERRQ--------------------------PFHLRTTIRN-FASLFRHKRVLGYMLASG  204 (377)
T ss_pred             HHHHHHHHHHHHHhCCccCcccccC--------------------------CCChHHHHHH-HHHHHcChHHHHHHHHHH
Confidence            8887776666666777764322111                          0000011122 222445566666555555


Q ss_pred             HHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHh---Hhc
Q 013707          257 FSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFIC---SIS  333 (438)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~  333 (438)
                      +..........+.|.+..+.+|+++.+.+.......++.+++. +..+++.||+|+|+.+..+.....+..+..   ...
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~  283 (377)
T PRK11102        205 FSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMT-IINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL  283 (377)
T ss_pred             HHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555556666677888888889999999999999999999988 888999999999998887776544332222   222


Q ss_pred             c-cchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHh-hhhhhhhhHh
Q 013707          334 W-SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGIS-SFANIVSPLI  390 (438)
Q Consensus       334 ~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~~g~~~  390 (438)
                      + +.+.... ..+.+.+.+...+.......|..| +++|++.+..+... .++..+++.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~  342 (377)
T PRK11102        284 DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL  342 (377)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            2 2232222 233344444455555666777666 89999999887664 3444444443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=100.00  E-value=3.9e-31  Score=244.82  Aligned_cols=340  Identities=22%  Similarity=0.299  Sum_probs=289.8

Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHH
Q 013707           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (438)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~   91 (438)
                      .+....+...++.....+..|.+.++        .+.+..+.+++.+...++..+++++.|+++||+|||+.+..+..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~   74 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAED--------LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLF   74 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHH
Confidence            35566778888889999999998764        3556678899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh----
Q 013707           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----  167 (438)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----  167 (438)
                      .++.+...+.++   ++.+++.|++.|+ +.+...+...+++.|++|+|+|++.+++.+...++|..+||.+++.+    
T Consensus        75 ~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  150 (352)
T cd06174          75 ALGSLLLAFASS---LWLLLVGRFLLGL-GGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL  150 (352)
T ss_pred             HHHHHHHHHhcc---HHHHHHHHHHHHc-ccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999988   8999999999999 88888999999999999999999999999999999999999988764    


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccch
Q 013707          168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVT  247 (438)
Q Consensus       168 ~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (438)
                      +||+.+++.+.+.++..+...+ .+                                                     |.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~-~~-----------------------------------------------------~~  176 (352)
T cd06174         151 GWRWLFLILAILGLLLALLLLF-LL-----------------------------------------------------RL  176 (352)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HH-----------------------------------------------------HH
Confidence            6999999988877666544433 33                                                     22


Q ss_pred             hHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh-HHHHHHHHHHHH
Q 013707          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK-LLSLGLFAACIN  326 (438)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~  326 (438)
                      ++...+..++..........+.|.+.++.+|.++.+.+.......++..++. +..+++.||+++|+ .+..+..+..++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~  255 (352)
T cd06174         177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGA-LLGGLLSDRLGRRRLLLLIGLLLAALG  255 (352)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            5556666777777888888999999999889999999999999999999998 88889999999999 999999999999


Q ss_pred             HHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCC
Q 013707          327 MFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPF  405 (438)
Q Consensus       327 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~  405 (438)
                      .+.....++.+.... ..+.+++.+...+...++..|..|+++|++..|+.+...+++..++|.+.|.+.|..       
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~-------  328 (352)
T cd06174         256 LLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG-------  328 (352)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------
Confidence            888888777655555 677889999999999999999999999999999999999999999999999998742       


Q ss_pred             CCCchHHHHHHHHHHHHHHHH
Q 013707          406 NFPGFSIMCIGLASVRAFTYE  426 (438)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~  426 (438)
                       .....+.+.+++.+++.+..
T Consensus       329 -~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         329 -GYGGVFLILAALALLAALLL  348 (352)
T ss_pred             -CcchHHHHHHHHHHHHHHHh
Confidence             22334455555555554443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=100.00  E-value=1.4e-30  Score=243.98  Aligned_cols=347  Identities=15%  Similarity=0.112  Sum_probs=267.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHH
Q 013707           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (438)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~   89 (438)
                      +..++...++..+..++..|.+|.+.+        +++.+..+.|++.+.+.+++.+++++.|++.||+|||+++..+.+
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~--------~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~   76 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQ--------AFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLF   76 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            455667777788888899999999855        557778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh--
Q 013707           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--  167 (438)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~--  167 (438)
                      +.+++..+...+...++++.+++.|++.|+ +.+...+..+.++.+..|+++|++.+++.+...++|..+||.++..+  
T Consensus        77 l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~  155 (410)
T TIGR00885        77 LYALGAFLFWPAAEIMNYTLFLVGLFILTA-GLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLIL  155 (410)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHh-hHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999998886554221228899999999999 88999999999999999999999999999999999999998876543  


Q ss_pred             ----------------------------hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCC
Q 013707          168 ----------------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNE  219 (438)
Q Consensus       168 ----------------------------~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (438)
                                                  +||++|++.+.+.++..+... +.++++.+++++                  
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~~------------------  216 (410)
T TIGR00885       156 SNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKMPALNHSDA------------------  216 (410)
T ss_pred             cCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCcccc------------------
Confidence                                        499999988887665433332 222221111000                  


Q ss_pred             CCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHc-CCChhHHHHHHHHHHHHHHHH
Q 013707          220 SNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF-HFNKNQFADLMLIAGLAGTIS  298 (438)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~  298 (438)
                            ++     .+.++..+...|+|.++...+..+++...+....++++.|.++.. +.+....+...+.......++
T Consensus       217 ------~~-----~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vG  285 (410)
T TIGR00885       217 ------KQ-----ISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFIS  285 (410)
T ss_pred             ------cc-----ccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence                  00     011111222456777777777888888788788889999987632 334444444555555667788


Q ss_pred             HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhh
Q 013707          299 QLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISG  378 (438)
Q Consensus       299 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  378 (438)
                      + ++.+++.||+++|+.+.++.....+..++..+.++....+...+.+++.+..+|..++...+..+++.+....++...
T Consensus       286 R-~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~  364 (410)
T TIGR00885       286 R-FIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA  364 (410)
T ss_pred             H-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Confidence            8 888999999999999988888888888888777665555567788899999999999999999987766555555554


Q ss_pred             HhhhhhhhhhHhHHHHHHHH
Q 013707          379 ISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       379 ~~~~g~~~g~~~~g~l~~~~  398 (438)
                      .  +|+++.|.+.|.+.|..
T Consensus       365 ~--~Gga~~p~l~G~~~d~~  382 (410)
T TIGR00885       365 I--IGGGIVPPLQGFIIDMK  382 (410)
T ss_pred             H--hccchHHHHHHHHHHHh
Confidence            4  99999999999999963

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11043 putative transporter; Provisional

Probab=100.00  E-value=3.1e-30  Score=242.94  Aligned_cols=340  Identities=16%  Similarity=0.093  Sum_probs=254.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHH
Q 013707            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (438)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (438)
                      .+........+..++.+++.|.+|.+.+        +++.+..+.|++.+++.++..++++++|+++||+|||+.+..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~p~~~~i~~--------~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   78 (401)
T PRK11043          7 FLVYLAGLSMLGFLATDMYLPAFKAIQA--------DLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGL   78 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHH--------HHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHH
Confidence            3344444566677788899999988865        45667788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH--
Q 013707           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF--  166 (438)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~--  166 (438)
                      .+..++.+++.++++   ++.+++.|+++|+ +.+...+...+++.|++|++++++..+.......+|..++|.+++.  
T Consensus        79 ~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  154 (401)
T PRK11043         79 SLFALGSLGMLWVES---AAQLLVLRFVQAV-GVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL  154 (401)
T ss_pred             HHHHHHHHHHHHhcC---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999   8999999999999 7777777888999999999999999999888888888888888876  


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcc
Q 013707          167 --LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS  244 (438)
Q Consensus       167 --~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (438)
                        .+||+.|++.+.+.++..+.. +.++|++++++++                            +   ..++ .+...+
T Consensus       155 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------------------~---~~~~-~~~~~~  201 (401)
T PRK11043        155 NHFGWQAIFATLFAITLLLILPT-LRLKPSKKARKQS----------------------------Q---DALT-FKQLLK  201 (401)
T ss_pred             hcCChHHHHHHHHHHHHHHHHHH-HHcCCCCCccccc----------------------------h---HHHH-HHHHHc
Confidence              489999999888776654443 3455443211110                            0   0011 222344


Q ss_pred             cchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 013707          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (438)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  324 (438)
                      +|.++...+...+..........+.|.+.++ +|+++.+.+.......++..+++ +..+++.||+++|+..........
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~-~~~~~l~~r~~~~~~~~~~~~~~~  279 (401)
T PRK11043        202 SKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGG-YGCRAALQKWGGEQLLPWLLVLFA  279 (401)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHH
Confidence            5555544444444444555666778888876 79999999988887778888887 778899999998886655544444


Q ss_pred             HHHHHh---Hh--cccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          325 INMFIC---SI--SWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       325 ~~~~~~---~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      ++...+   ..  .++.+.... ..+.+++.+...|...+...+..| +++|++.|+.+..+..+...++.+.|.+.+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        280 VSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            433222   22  122222222 456677788888888888777766 689999999999999999999999988866

>PRK11010 ampG muropeptide transporter; Validated

Probab=100.00  E-value=9.4e-30  Score=243.90  Aligned_cols=375  Identities=13%  Similarity=0.074  Sum_probs=266.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhccccccc-----CcchH
Q 013707            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKAM   83 (438)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-----Grk~~   83 (438)
                      +...++...+.......+..+.+|.+.++        .+.+..++|.. +...... ++.+++|+++||+     ||||.
T Consensus        13 ~~~~~~~l~~~~gl~~~~~~~~l~~~l~~--------~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~   82 (491)
T PRK11010         13 NSAILLILGFASGLPLALTSGTLQAWMTV--------ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRG   82 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchH
Confidence            35556666777888888999999999774        25555667775 3334443 5889999999999     99986


Q ss_pred             -hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHh
Q 013707           84 -LTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (438)
Q Consensus        84 -l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  162 (438)
                       +..+.+..+++....++.+...+++.+.+.+++.|+ +.+...+...+++.|++|+|||+++.++...+..+|.++++.
T Consensus        83 ~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~-~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~  161 (491)
T PRK11010         83 WLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAF-CSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGG  161 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence             557777777777777776443348889999999999 788888999999999999999999999999999999999886


Q ss_pred             hhHH-----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhH
Q 013707          163 AARF-----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (438)
Q Consensus       163 l~~~-----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (438)
                      ++..     .|||..|++.+++.++..+. .+..||++++++++                   +    +...+...++++
T Consensus       162 l~~~l~~~~~GWr~~f~i~a~l~ll~~l~-~~~~~e~~~~~~~~-------------------~----~~~~~~~~~l~~  217 (491)
T PRK11010        162 LALWLADRYLGWQGMYWLMAALLIPCIIA-TLLAPEPTDTIPVP-------------------K----TLEQAVVAPLRD  217 (491)
T ss_pred             HHHHHHhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCccccccc-------------------c----chhhhHHHHHHH
Confidence            6554     48999999998876665443 34467754321110                   0    000000012222


Q ss_pred             HHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhchhhHH
Q 013707          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIA-GLAGTISQLLFMPLLAPILGEAKLL  316 (438)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~  316 (438)
                          +++++..+...+..++..........+.++|+.+.+|+++.+.+...... .++.+++. ++.|+++||+++|+.+
T Consensus       218 ----~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~-ll~G~L~dr~g~~~~l  292 (491)
T PRK11010        218 ----FFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGA-LYGGILMQRLSLFRAL  292 (491)
T ss_pred             ----HHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHH
Confidence                44455555555555666666666677888888777899999999987544 46777777 8999999999998877


Q ss_pred             HHHHHHHHHHHHHh---Hhcc-cchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhH
Q 013707          317 SLGLFAACINMFIC---SISW-SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIF  391 (438)
Q Consensus       317 ~~~~~~~~~~~~~~---~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~  391 (438)
                      ..+..+.++..+.+   .... +.+.... ..+..++.+...+...+...+..+++.+++..|+.+....+|..+++.+.
T Consensus       293 ~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~  372 (491)
T PRK11010        293 MIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVA  372 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            76665544443322   2322 2222222 34445555666677788889999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhh
Q 013707          392 SPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSF  431 (438)
Q Consensus       392 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (438)
                      |.++|..+        ....|.+.+++.+.+.+.....++
T Consensus       373 G~l~~~~G--------~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        373 GWFVEAHG--------WPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHhC--------hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999742        233556666666666666665554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=6.7e-30  Score=236.83  Aligned_cols=365  Identities=14%  Similarity=0.090  Sum_probs=267.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      +|++....+..++.+....+..|+.+.+.+       .|++++..+.+++.+++.++..++.++.|++.||+|.|+++.+
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~-------~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~  105 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNK-------IGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVF  105 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            367777778888888888888888877743       2678888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc-----ccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhh-
Q 013707           87 PLTLSIIPLAILAYR-----RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG-  160 (438)
Q Consensus        87 ~~~~~~~~~~~~~~~-----~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g-  160 (438)
                      +.++.++.++..+++     ++   ++.+++.|++.|+ + +...+.....+++++|+++||+++|+.....++|..++ 
T Consensus       106 ~~ll~~i~~~~~~~a~~~~~~s---~~~lli~r~l~Gi-g-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~  180 (462)
T PRK15034        106 STAILIIPCVWLGIAVQNPNTP---FGIFIVIALLCGF-A-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ  180 (462)
T ss_pred             HHHHHHHHHHHHHHHHcccCCC---HHHHHHHHHHHHH-H-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence            999999999999986     67   9999999999999 6 56778899999999999999999999976666666544 


Q ss_pred             ---HhhhH------------------HhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCC
Q 013707          161 ---TLAAR------------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNE  219 (438)
Q Consensus       161 ---~~l~~------------------~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (438)
                         |.+.+                  ..+||..+++..++.++..++.++..+|.++.  +                   
T Consensus       181 ~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~--~-------------------  239 (462)
T PRK15034        181 LVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS--R-------------------  239 (462)
T ss_pred             HHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc--c-------------------
Confidence               43221                  22478777787777666666666665543321  1                   


Q ss_pred             CCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHH
Q 013707          220 SNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQ  299 (438)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  299 (438)
                                   .+.++..+ ..|+|..|...+..++....+.++..++|.|.++.+  +............+...+.+
T Consensus       240 -------------~~~~~~~~-vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~r  303 (462)
T PRK15034        240 -------------ASIADQLP-VLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIAR  303 (462)
T ss_pred             -------------cCHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHH
Confidence                         12344343 456777888888888888888888889999998865  33333323334456677777


Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHh-cc-----cchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCC------
Q 013707          300 LLFMPLLAPILGEAKLLSLGLFAACINMFICSI-SW-----SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGP------  366 (438)
Q Consensus       300 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------  366 (438)
                       +++|+++||+|+++++..+.+...+....... .+     +.+.... .....++.+..+...+-++.+.+|+      
T Consensus       304 -plgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~  382 (462)
T PRK15034        304 -SVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRV  382 (462)
T ss_pred             -HhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcc
Confidence             88899999999999998888777666533222 22     1222222 2333455566666666666666663      


Q ss_pred             ---------------CcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 013707          367 ---------------NEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELL  428 (438)
Q Consensus       367 ---------------~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (438)
                                     ++.|.+.|+......+|+.+-|.+.|...+.++++       ...+....+..+++....+.
T Consensus       383 ~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~-------~~~~~~~~~~~~~~~~~~w~  452 (462)
T PRK15034        383 KMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSP-------VGAMKVFLIFYIVCVLLTWL  452 (462)
T ss_pred             cccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCc-------HHHHHHHHHHHHHHHHHHHH
Confidence                           15789999999999999999999999998876432       22334444445555555443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=100.00  E-value=2.3e-30  Score=243.56  Aligned_cols=350  Identities=13%  Similarity=0.059  Sum_probs=247.6

Q ss_pred             HHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHH
Q 013707           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (438)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~   97 (438)
                      +++.++.....+..+.+.++...+ .+|............+...++..+++++.|+++||+|||+++..+.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~   81 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPP-SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLL   81 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            345566666666666666554221 1122222222222334455666689999999999999999999999999999999


Q ss_pred             HHhcccchh-----HHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH------
Q 013707           98 LAYRRSISF-----FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF------  166 (438)
Q Consensus        98 ~~~~~~~~~-----~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~------  166 (438)
                      ++++++...     ...+++.|+++|+ +.+...+...+++.|+.|+++|++..+..+.+..+|.++++.++..      
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~  160 (394)
T TIGR00883        82 IGLLPSYATIGIWAPILLLLARLIQGF-SLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG  160 (394)
T ss_pred             HhhCCChhhhHHHHHHHHHHHHHHHHh-hccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999988321     1258899999999 8888888999999999999999999999999999999998876532      


Q ss_pred             ------hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHH
Q 013707          167 ------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (438)
Q Consensus       167 ------~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (438)
                            .+||++|++.+++.++. .......||+++.+++++                        ++++...+.++.  
T Consensus       161 ~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~--  213 (394)
T TIGR00883       161 DDALLEWGWRIPFLVSAVLVLIG-LYLRRNLEETPVFEKAQE------------------------KHKKKRGPIRET--  213 (394)
T ss_pred             HHHhhccchHHHHHHHHHHHHHH-HHHHHhcCCChhHHHHHh------------------------ccccccCCHHHH--
Confidence                  47999999877665443 333345565543221110                        000011122332  


Q ss_pred             hhccc-chhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q 013707          241 LLRSS-VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (438)
Q Consensus       241 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (438)
                       ++++ +.++......++..........+.|.|.++.+|.++.+.+.......+...++. ++.++++||+++|+.+..+
T Consensus       214 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~  291 (394)
T TIGR00883       214 -LTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITI-PLSGALSDRIGRRPVLIIF  291 (394)
T ss_pred             -HHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhchHHHHHHH
Confidence             2222 235555566666666777778899999988889999999999988889998888 8889999999999877655


Q ss_pred             HHHHHHHH-H-HhHhc--ccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHH-hhHhhhhhhhhhHhHHH
Q 013707          320 LFAACINM-F-ICSIS--WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCI-SGISSFANIVSPLIFSP  393 (438)
Q Consensus       320 ~~~~~~~~-~-~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~~g~~~~g~  393 (438)
                      ..+..+.. . .....  ++.+.... ..+.+++.+...+...+.+.|.+|+++|+++.++. +....+|..++|.+.|.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~  371 (394)
T TIGR00883       292 TVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAA  371 (394)
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHH
Confidence            44433322 2 22222  23333333 45667777788888999999999999999999985 45567888999999999


Q ss_pred             HHHHH
Q 013707          394 LTALF  398 (438)
Q Consensus       394 l~~~~  398 (438)
                      +.|+.
T Consensus       372 l~~~~  376 (394)
T TIGR00883       372 LVAMT  376 (394)
T ss_pred             HHHHc
Confidence            99974

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00896 CynX cyanate transporter

Probab=100.00  E-value=1.8e-30  Score=240.49  Aligned_cols=331  Identities=13%  Similarity=0.056  Sum_probs=252.3

Q ss_pred             hhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhc
Q 013707           22 FATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR  101 (438)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~  101 (438)
                      .......|.+|.+.+        +++.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.++..++.+.+ .+
T Consensus        14 ~~~~~~~~~lp~l~~--------~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~   84 (355)
T TIGR00896        14 PALTSVGPLLPQIRS--------ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA   84 (355)
T ss_pred             CccccCcccHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh
Confidence            344667889998865        557778899999999999999999999999999999999999998888887776 66


Q ss_pred             ccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh------hHHHHHHH
Q 013707          102 RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL------STTSAFQA  175 (438)
Q Consensus       102 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~------~w~~~f~~  175 (438)
                      ++   .+.+++.|++.|+ +.+...+....++.|++| ++|+++++..+...++|..+++.+++.+      +||..|..
T Consensus        85 ~~---~~~l~~~~~~~g~-g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~  159 (355)
T TIGR00896        85 PG---TALLFAGTALIGV-GIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAW  159 (355)
T ss_pred             cc---HHHHHHHHHHHHH-HHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            77   8888999999999 778877788888899886 6899999999999999998888776553      38988887


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHH
Q 013707          176 ATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVA  255 (438)
Q Consensus       176 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (438)
                      .+...++..   ...+||.++++++++                       +.   .....++    ..|+|.++...+..
T Consensus       160 ~~~~~~~~~---~~~~~~~~~~~~~~~-----------------------~~---~~~~~~~----~~~~~~~~~~~~~~  206 (355)
T TIGR00896       160 WALPALLAL---LAWIPQVRRRVAANQ-----------------------TT---TRLTPVR----IWRSPLAWQVTVFF  206 (355)
T ss_pred             HHHHHHHHH---HHHhhhhccccCCCC-----------------------CC---CCCCCch----hhcCHhHHHHHHHH
Confidence            765543322   223454432211100                       00   0001112    34456666666666


Q ss_pred             HHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHHHHHHHHHHhHhcc
Q 013707          256 FFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-GEAKLLSLGLFAACINMFICSISW  334 (438)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  334 (438)
                      ++....+.....++|.|+++ .|+++.+.+...+...++.++++ +..+++.||+ ++|+.+..+..+..++.+.+.+.+
T Consensus       207 ~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~-~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (355)
T TIGR00896       207 GLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASA-LLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP  284 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh
Confidence            66666777778899999987 69999999999999999999998 8889999999 456667777777777777666655


Q ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHhhcCC-CCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcC
Q 013707          335 SAWVPYATTAFSVLVVFATPSFRSIVSKQVG-PNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSK  401 (438)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~  401 (438)
                      +........+.+++.+...|...+.+.+..+ ++++++..++.+....++..++|.+.|.+.|+.+++
T Consensus       285 ~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~  352 (355)
T TIGR00896       285 MHGLWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNW  352 (355)
T ss_pred             hhHHHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4433334567788888888887777665554 567789999999999999999999999999986543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09528 lacY galactoside permease; Reviewed

Probab=100.00  E-value=2.8e-30  Score=244.55  Aligned_cols=358  Identities=11%  Similarity=0.022  Sum_probs=247.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      ++..+.+.+..++..++.+...|.+|.+.++       +++.+..+.|++.+.+.++..++++++|+++||+|||+++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~   81 (420)
T PRK09528          9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHD-------INGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLW   81 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            4566777778888888889999999999874       467788899999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHH---hcccc--hhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhH
Q 013707           87 PLTLSIIPLAILA---YRRSI--SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (438)
Q Consensus        87 ~~~~~~~~~~~~~---~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  161 (438)
                      +..+.++......   .++..  ..+...++.++..|. +.....+....+..+.  ++++++.+|..+...++|..+||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~  158 (420)
T PRK09528         82 IISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGF-GFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCA  158 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHH
Confidence            7666554433221   11110  001112233333343 2222223333333222  24567788888888999999999


Q ss_pred             hhhHHh---hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHH
Q 013707          162 LAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL  238 (438)
Q Consensus       162 ~l~~~~---~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (438)
                      .+++.+   +|+.+|++.+++.++..+..++..||++++.+.+ +              + ++.      .+++.+.++.
T Consensus       159 ~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------~-~~~------~~~~~~~~~~  216 (420)
T PRK09528        159 FIAGILFNINPQINFWLGSGSALILLVLLFFAKPDAPSTAKVA-N--------------A-LGA------NASAVSLKDA  216 (420)
T ss_pred             HHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccccchhhhc-c--------------c-hhc------ccccccHHHH
Confidence            998875   7999999988777666555444444432221110 0              0 000      0011123333


Q ss_pred             HHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHc---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 013707          239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF---HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (438)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  315 (438)
                      .+ ..|+|.++...+..+.............|.|+.+.+   +.+..+.|.+.+...+...++. +..+++.||+++|+.
T Consensus       217 ~~-~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~  294 (420)
T PRK09528        217 LA-LLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIM-FFAPFIINRIGAKNA  294 (420)
T ss_pred             HH-HccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcchh
Confidence            33 445666665555444444444555556777776543   5666778898888888888887 888999999999999


Q ss_pred             HHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHH-HhhHhhhhhhhhhHhHHH
Q 013707          316 LSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGC-ISGISSFANIVSPLIFSP  393 (438)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~g~~~~g~  393 (438)
                      +..+..+.+++.++..+.++.+..+. ..+.+.+.+...+....++.+..|++.+++..+. ++....+|.+++|.+.|+
T Consensus       295 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~  374 (420)
T PRK09528        295 LLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGN  374 (420)
T ss_pred             hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHH
Confidence            99988888888888888777776555 4566777777777777888999999999988766 677889999999999999


Q ss_pred             HHHHH
Q 013707          394 LTALF  398 (438)
Q Consensus       394 l~~~~  398 (438)
                      +.|..
T Consensus       375 l~~~~  379 (420)
T PRK09528        375 LYDSI  379 (420)
T ss_pred             HHHhh
Confidence            99974

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=100.00  E-value=1e-29  Score=237.47  Aligned_cols=335  Identities=12%  Similarity=-0.001  Sum_probs=252.9

Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcc----hHhHHHHHHH
Q 013707           16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK----AMLTLPLTLS   91 (438)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk----~~l~~~~~~~   91 (438)
                      ..+...++.++..|.+|.+.+        |.+.+..+.|++.+++.++..++++++|+++||+|||    +.+.+.....
T Consensus        12 ~~~~~~~~~g~~~p~l~~~l~--------~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~   83 (382)
T PRK11128         12 SYFGYFFAYGVFLPFWSVWLK--------GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF   83 (382)
T ss_pred             HHHHHHHHHHHHhhhHHHHHH--------hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            355556778999999999986        4467778999999999999999999999999999994    3333222221


Q ss_pred             HHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH----h
Q 013707           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----L  167 (438)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~  167 (438)
                        ........++   ++.+++.|++.|+ +.+...|...+++.|+  +++|+++++..+...++|..+||.++++    +
T Consensus        84 --~~~~~~~~~~---~~~l~i~~~l~g~-~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~  155 (382)
T PRK11128         84 --AVAFWFGAHS---FWLLFVAIGLFNL-FFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF  155 (382)
T ss_pred             --HHHHHHhccc---HHHHHHHHHHHHH-HHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence              2222334567   8899999999999 7777888888888887  4567888888888889999999999886    4


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccch
Q 013707          168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVT  247 (438)
Q Consensus       168 ~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (438)
                      |||..|++.++..++.. +..+..||++++++++                    +    +.++..+++    +.++|+|.
T Consensus       156 g~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------------~----~~~~~~~~~----~~i~~~~~  206 (382)
T PRK11128        156 GEQAILWILTAGVASML-LGQLLRPTIMPQGESR--------------------Q----QESAGWPAW----KALLKEPT  206 (382)
T ss_pred             ChhHHHHHHHHHHHHHH-HHHHccCCCCCccccc--------------------c----ccccccchH----HHHHcChh
Confidence            89999998876544332 2333344432211110                    0    000001122    33667788


Q ss_pred             hHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 013707          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (438)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (438)
                      ++...+..++..........+.|.|.+| .|.++.+.|.+.+...+..++.. ...+++.||+++++.+..+....+++.
T Consensus       207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~l~~~~~~~~~~~  284 (382)
T PRK11128        207 VWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIF-AFSNRLFRRWSARDLLLLSAICGVVRW  284 (382)
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            8877777777777777788888999976 79999999999998888777777 788899999999999999999888888


Q ss_pred             HHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHh-hHhhhhhhhhhHhHHHHHHHH
Q 013707          328 FICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCIS-GISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       328 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      +.....++.+..+. .++.+++.+...+....+..+. +++++++..+..+ ....+|..+||.++|.++|.+
T Consensus       285 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~  356 (382)
T PRK11128        285 GLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL  356 (382)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88877777776655 6777888888888888888876 5677899999887 445777899999999999974

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=2.6e-30  Score=273.69  Aligned_cols=359  Identities=11%  Similarity=0.070  Sum_probs=265.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      ++.+..++...++..++.++....++.+....+  ..+....+....++..+++.+++.+++++.|+++||+|||+++..
T Consensus        10 ~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~   87 (1140)
T PRK06814         10 SRRFAPLFWTQFFGAFNDNFLKNALVILILYGL--SGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKI   87 (1140)
T ss_pred             ccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh--ccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHH
Confidence            345566777788887776655444333322111  111112233567899999999999999999999999999998643


Q ss_pred             ---HHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhh
Q 013707           87 ---PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (438)
Q Consensus        87 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l  163 (438)
                         ..+...+........++   ++.++++|+++|+ +.+...|+..+++.|++|+++|++++|+.+++.++|.++||.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~s---~~~l~~~~~l~gi-~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l  163 (1140)
T PRK06814         88 LKFAEIGIAALAIYGFHLNS---VPLLFAALFLMGI-HSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTII  163 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH-HHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHH
Confidence               22222222333334467   8999999999999 8899999999999999999999999999999999999999999


Q ss_pred             hHHh----hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHH
Q 013707          164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (438)
Q Consensus       164 ~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (438)
                      ++++    +|++.|....+.. +..++..+.+|++++......                        ...+......+.+
T Consensus       164 ~g~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~  218 (1140)
T PRK06814        164 GGLATISGNFVILVALLMGIA-VLGWLASLFIPKTGNAAPDLK------------------------IDRNIIRSTITLL  218 (1140)
T ss_pred             HHHHHhccccHHHHHHHHHHH-HHHHHHHhhCCCCCCCCCCCe------------------------eccchHHHHHHHH
Confidence            9885    8998885444443 334445566776543222110                        0000001233445


Q ss_pred             HhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q 013707          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (438)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (438)
                      +.++++|.++...+..++..+.......++|.|+++.+|.++.+.|.+.+..+++.++++ +..+++.|+..+++.+..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~-~~~g~l~~~~~~~~~~~~~  297 (1140)
T PRK06814        219 KYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGS-FLASKLSEGRITLLYVPIG  297 (1140)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHH-HHHHHHhCCceeeeeehHH
Confidence            667788889888888888877778888899999999999999999999999999999998 8888999887766655555


Q ss_pred             HHHHHHHHHHhHhc--------------------ccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhh
Q 013707          320 LFAACINMFICSIS--------------------WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISG  378 (438)
Q Consensus       320 ~~~~~~~~~~~~~~--------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  378 (438)
                      .++.+++.+.+.+.                    .+.+...+ .+++|++.+...+...+++++.+|++++|+++|..++
T Consensus       298 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~  377 (1140)
T PRK06814        298 ALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNV  377 (1140)
T ss_pred             HHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHH
Confidence            55554444433332                    34444444 5677888888888999999999999999999999999


Q ss_pred             HhhhhhhhhhHhHHHHHHH
Q 013707          379 ISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       379 ~~~~g~~~g~~~~g~l~~~  397 (438)
                      ...++..+++.+.|.+.+.
T Consensus       378 ~~~~~~~ig~~~~g~l~~~  396 (1140)
T PRK06814        378 LNAAFMVAGTIILALLQAL  396 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998764

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=100.00  E-value=1.6e-30  Score=242.09  Aligned_cols=342  Identities=18%  Similarity=0.172  Sum_probs=248.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHH
Q 013707           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (438)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~   89 (438)
                      ++..++..++...+.....|..|.+.++       +++.+..+.|++.+.+.++..+++++.|+++||+|||+.+..+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   75 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKD-------DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLL   75 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHH-------HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            4556777777888888889999964432       567778889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc-cchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH--
Q 013707           90 LSIIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF--  166 (438)
Q Consensus        90 ~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~--  166 (438)
                      +..++.+++++++ +   ++.+++.|+++|+ +.+.. +...+++.|++|+++|++++++.....++|..+++.++..  
T Consensus        76 ~~~i~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  150 (366)
T TIGR00886        76 LLAIPCLWAGLAVQS---YSVLLLLRLFIGI-AGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII  150 (366)
T ss_pred             HHHHHHHHHHHHhhh---HHHHHHHHHHHHH-hchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            9999999999998 8   8999999999999 65544 5678999999999999999999987777776666555432  


Q ss_pred             ------------hhHHHHH-HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCC
Q 013707          167 ------------LSTTSAF-QAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIP  233 (438)
Q Consensus       167 ------------~~w~~~f-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (438)
                                  .+||+.| +..+++..+..++.....+|++++++++++.+           .++++  .  .  .+.+
T Consensus       151 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--~--~--~~~~  213 (366)
T TIGR00886       151 GSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLS-----------FKGAR--W--S--VGTG  213 (366)
T ss_pred             HHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcc-----------ccccc--c--c--ccch
Confidence                        2699999 44455544444555555666554322110000           00000  0  0  0001


Q ss_pred             chhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 013707          234 SIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEA  313 (438)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  313 (438)
                      ..++..+ ..++|.++...+..++..........+.|.|+++.+|+++.+.+.+.....+..+++. ++.+++.||+++|
T Consensus       214 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~g~~  291 (366)
T TIGR00886       214 ALGDQLK-VFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLAR-PLGGAISDRLGGA  291 (366)
T ss_pred             hHHHHHH-HHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHh-hccchHHHhhccc
Confidence            1122222 3345566666666666666667788899999999899999999988888888888888 8889999999998


Q ss_pred             hHHHHHHHHHHHHHHHhHhcc----cchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhh
Q 013707          314 KLLSLGLFAACINMFICSISW----SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFA  383 (438)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  383 (438)
                      +....+......+...+.+..    +.+.... ..+..+..+...+...+...+..| +++|++.|+.+...++|
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       292 RKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            877777666666555544322    2222222 344455566666667777788776 79999999999988765

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.8e-31  Score=246.87  Aligned_cols=365  Identities=14%  Similarity=0.099  Sum_probs=279.1

Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcch
Q 013707           43 LDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE  122 (438)
Q Consensus        43 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  122 (438)
                      .++++.+..+.|++.+.++.|+++++.+.|+++||+|-|+++..+.++.++++++.+.+.+.+ ++.+++.|++||+ +.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~-~~~~~~~R~lqGl-~~  142 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG-FYLLLVLRFLQGL-GQ  142 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHhHH-HH
Confidence            347888999999999999999999999999999999999999999999999999999987655 4588999999999 99


Q ss_pred             hhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH-----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 013707          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (438)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~  197 (438)
                      |...|+...+.++|.|++||++..++..++..+|.+++-+++++     +||+.+|++.+.++++..++..++..|+|++
T Consensus       143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~  222 (466)
T KOG2532|consen  143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK  222 (466)
T ss_pred             hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            99999999999999999999999999999999999998777776     4999999999999998887777778877766


Q ss_pred             CCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHc
Q 013707          198 DDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF  277 (438)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (438)
                      ++.-.+  +..+..++...       .++.+++...|+++    +.+++.+|...+..+........+..+.|.|+++++
T Consensus       223 h~~is~--~El~~I~~~k~-------~~~~~~~~~vP~~~----i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL  289 (466)
T KOG2532|consen  223 HPNISE--KELKYIEKGKS-------EAHVKKKPPVPYKA----ILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL  289 (466)
T ss_pred             CCCCCH--HHHHHHHhccc-------ccccCCCCCCCHHH----HHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence            433200  00000000000       00011113346665    667889999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhch---------hhHHHHHHHHHHHHHHHhHhcccchH--HHHHHHHH
Q 013707          278 HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE---------AKLLSLGLFAACINMFICSISWSAWV--PYATTAFS  346 (438)
Q Consensus       278 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  346 (438)
                      |+|..+.|++.++..+...+.. ++.|.++||+.+         |..-.++....++.++.+++.++...  ........
T Consensus       290 ~f~v~~~G~~salP~l~~~~~k-~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~  368 (466)
T KOG2532|consen  290 GFDVRETGFLSALPFLAMAIVK-FVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIA  368 (466)
T ss_pred             CCChhhhhHHHHHHHHHHHHHH-HHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHH
Confidence            9999999999999999999998 888999998754         33445667777777877777764333  22222232


Q ss_pred             hh-hhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHH
Q 013707          347 VL-VVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTY  425 (438)
Q Consensus       347 ~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (438)
                      .+ .+...+..+.-..+. .+++.+..+|+.+....+.+.++|.+.|.+...  +  ... --...|++.+++.+++.++
T Consensus       369 ~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~--~--t~~-eW~~VF~i~a~i~~~~~i~  442 (466)
T KOG2532|consen  369 IGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTD--N--TRE-EWRIVFLIAAGILIVGNII  442 (466)
T ss_pred             HHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCC--C--CHH-HHHHHHHHHHHHHHHhchh
Confidence            22 333333333333433 459999999999999999999999999998841  1  000 1123556666666666554


Q ss_pred             HHhh
Q 013707          426 ELLL  429 (438)
Q Consensus       426 ~~~~  429 (438)
                      ....
T Consensus       443 f~~f  446 (466)
T KOG2532|consen  443 FLFF  446 (466)
T ss_pred             eeEe
Confidence            4433

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=100.00  E-value=2.5e-31  Score=229.67  Aligned_cols=337  Identities=18%  Similarity=0.284  Sum_probs=248.2

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhh
Q 013707           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS  124 (438)
Q Consensus        45 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  124 (438)
                      +.+.+....|++.+.+.+.+.+.++.+|.++||+|||+++..++...++...+.++++|   +..+.++|++.|+ ..|.
T Consensus        62 ~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~---F~afv~aR~l~Gi-~kgn  137 (451)
T KOG2615|consen   62 PDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN---FAAFVLARFLGGI-FKGN  137 (451)
T ss_pred             cccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhh-ccCc
Confidence            33456788999999999999999999999999999999999999999999999999999   8677777999999 7676


Q ss_pred             HhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHhhH------HHHHHHHH----HHHHHHHHHHHHhcccC
Q 013707          125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLST------TSAFQAAT----IVSMLAAAYMRVFLKDD  194 (438)
Q Consensus       125 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~~w------~~~f~~~~----~~~~i~~~~~~~~~~~~  194 (438)
                      . ....++++|+.++|+|+.+++.++.++++|.++||.+|+++.-      +.+|....    ++.........+++||+
T Consensus       138 l-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET  216 (451)
T KOG2615|consen  138 L-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET  216 (451)
T ss_pred             h-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            6 4799999999999999999999999999999999999999743      22333322    22222123445689998


Q ss_pred             CCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccc------hhHHHHHHHHHHHhhhchhhHH
Q 013707          195 VPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSV------TLSQAAVVAFFSGLSEGGMQAS  268 (438)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  268 (438)
                      -+.++++++.....+..+++.+-.       +.      +.......++++|      ......+..+++...+......
T Consensus       217 L~~rk~~~~~~~~~~~~~~~~~~~-------~~------~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t  283 (451)
T KOG2615|consen  217 LPLRKRNDEHSTLQEAADDRLALL-------KF------ARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENT  283 (451)
T ss_pred             ccchhhcccccchhhhhhhhhhhc-------ch------hhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            665544411111111111110000       00      0000001111111      1223444555665566666666


Q ss_pred             HHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhhHHHHHHHHHHHHHHHhHhcccchHHHH-HHHH
Q 013707          269 FLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG--EAKLLSLGLFAACINMFICSISWSAWVPYA-TTAF  345 (438)
Q Consensus       269 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  345 (438)
                      .+.+..+.+|+++.+.|.+++..++.+.+.+..+ .+..+|.+  .+..+..+..++.-.++++.....+..++. ..+.
T Consensus       284 ~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~-~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~  362 (451)
T KOG2615|consen  284 VLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLAL-VPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLK  362 (451)
T ss_pred             HHHhhcCccCCChhhheeeeehhhHHHHHHHHhc-cccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHH
Confidence            6666677799999999999999999999988444 45556655  455666777777777777777777776666 6778


Q ss_pred             HhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhc
Q 013707          346 SVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLS  400 (438)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~  400 (438)
                      .+......+....++.+..|+++||+++|+..+...++.++||.+.|.+..+...
T Consensus       363 sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~  417 (451)
T KOG2615|consen  363 SFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQG  417 (451)
T ss_pred             HHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecC
Confidence            8888888999999999999999999999999999999999999999999887543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=9.1e-30  Score=270.58  Aligned_cols=358  Identities=15%  Similarity=0.124  Sum_probs=267.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      .+.+..+++..++..++.......+..+.....     +.+.+....+++.+++.++..++++++|+++||+|||++++.
T Consensus         8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~   82 (1146)
T PRK08633          8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAY-----DGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRI   82 (1146)
T ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHH
Confidence            455666677777766655444333333333221     223344667999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh---cccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhh
Q 013707           87 PLTLSIIPLAILAY---RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (438)
Q Consensus        87 ~~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l  163 (438)
                      +.++..+..++..+   +++   ++.+++.|+++|+ +.+...++..+++.|++|+++|++++++.+.+.++|.++||.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l  158 (1146)
T PRK08633         83 VKLFEVGLTLLIVLAYYLGW---FWLAFAVTFLLGA-QSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTAL  158 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHH-HHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHH
Confidence            88776666555443   456   8999999999999 8899999999999999999999999999999999999999999


Q ss_pred             hHHhh-------------HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccc
Q 013707          164 ARFLS-------------TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCK  230 (438)
Q Consensus       164 ~~~~~-------------w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (438)
                      ++++.             |++.+.+..+...+..++..+.+||.++....+.                  +    +....
T Consensus       159 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~----~~~~~  216 (1146)
T PRK08633        159 FSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF------------------D----KKKYL  216 (1146)
T ss_pred             HHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc------------------c----ccccc
Confidence            88752             2333333333333333344455677654322210                  0    00000


Q ss_pred             cCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013707          231 KIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKN-QFADLMLIAGLAGTISQLLFMPLLAPI  309 (438)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~  309 (438)
                      .....++.++.+++++.++..++..++..........++|.|+++.+|++.. +.+++.+...++.++++ ++.+++.||
T Consensus       217 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~-~~~g~l~~r  295 (1146)
T PRK08633        217 FPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGS-LLAGRLSGR  295 (1146)
T ss_pred             cHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHhCC
Confidence            0112233455567788787777777776666677788899999998999998 89999999999988988 888999999


Q ss_pred             hchhhHHHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhh
Q 013707          310 LGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSP  388 (438)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~  388 (438)
                      +++++.+.++.++.+++.+.+.+..+.+...+ .++.+++.+...+...+++.+..|++.||+++|+.+.+..++..+++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~  375 (1146)
T PRK08633        296 HIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFL  375 (1146)
T ss_pred             ceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHH
Confidence            99988888888888888877777666555444 57778888888888999999999999999999999999999998888


Q ss_pred             HhHHHHHH
Q 013707          389 LIFSPLTA  396 (438)
Q Consensus       389 ~~~g~l~~  396 (438)
                      .+++.+..
T Consensus       376 ~~~~~l~~  383 (1146)
T PRK08633        376 ALTTLFSG  383 (1146)
T ss_pred             HHHHHHHH
Confidence            77665544

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=100.00  E-value=1e-28  Score=232.34  Aligned_cols=369  Identities=12%  Similarity=0.061  Sum_probs=256.1

Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhccccccc-----Ccch-HhHHH
Q 013707           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKA-MLTLP   87 (438)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-----Grk~-~l~~~   87 (438)
                      +...+...+..+...+.+|.+.++        .+.+..++|++..+...  .+..+++|+++||+     |||| .+..+
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~--------~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~   74 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTV--------EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLT   74 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHH
Confidence            334556677888899999999884        47778899998777665  68999999999999     8876 67888


Q ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH-
Q 013707           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-  166 (438)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-  166 (438)
                      .++.+++.....+.++..+++.+++..++.+. ..+...++..+++.|+.|+|||+++.++...+.++|.++|+.++.. 
T Consensus        75 ~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l  153 (402)
T PRK11902         75 QVGLAASIAAMAFCPPHAALWPLAGLAVLVAF-LSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWL  153 (402)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            88888888887887543337778888888887 7788889999999999999999999999999999999998876654 


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhh
Q 013707          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (438)
Q Consensus       167 ----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (438)
                          .|||..|++.+++.++..+ ..+..||+++++++++                        +   ..++.++.++.+
T Consensus       154 ~~~~~gw~~~f~i~a~~~l~~~l-~~~~~~e~~~~~~~~~------------------------~---~~~~~~~~~~~l  205 (402)
T PRK11902        154 ADRVLGWGNTYLLMAGLMLAGAL-TTLWAPEPEVPARPPR------------------------S---LGEAVVGPLRDF  205 (402)
T ss_pred             HhcccCHHHHHHHHHHHHHHHHH-HHHhcCCCcccccccc------------------------h---hHHHHHHHHHHH
Confidence                3899999998887655443 3456676543221110                        0   000122334446


Q ss_pred             cccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 013707          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGL-AGTISQLLFMPLLAPILGEAKLLSLGLF  321 (438)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~  321 (438)
                      +++|.++..++..++..........+.+.++.+.+|+++.+.+.+....+. +.+++. ++.+++.||+++|+.+..+..
T Consensus       206 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~-~~~g~l~~r~g~~~~l~~~~~  284 (402)
T PRK11902        206 FSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGA-LAGGTLMVRLGLYRSLMLFGV  284 (402)
T ss_pred             HhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHH
Confidence            778878777666666555444444455666777789999999998866655 466666 888999999999888777666


Q ss_pred             HHHHHHHHh---Hhcc-cchHHHH-HHHHHhh----hhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHH
Q 013707          322 AACINMFIC---SISW-SAWVPYA-TTAFSVL----VVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFS  392 (438)
Q Consensus       322 ~~~~~~~~~---~~~~-~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g  392 (438)
                      +..+..+.+   ...+ +.+.... ..+..+.    .+...+....++++..|    ++..+..+....++...++.++|
T Consensus       285 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~G  360 (402)
T PRK11902        285 LQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS----ATQYALLSALASVGRVYVGPTSG  360 (402)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            655544333   3333 3343333 2232333    34444444455555544    45556666677788877778999


Q ss_pred             HHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhc
Q 013707          393 PLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSFYVF  434 (438)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (438)
                      .++|..+        ....+...+++.+++....++.+++.+
T Consensus       361 ~l~~~~G--------~~~~f~~~~~~~~~~~~~~~~~~~~~~  394 (402)
T PRK11902        361 YLVEAYG--------WPGFYLMTVVIALPGLALLWLMRGTIG  394 (402)
T ss_pred             HHHHHhC--------hHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999842        344556666666666666666666543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.98  E-value=2.9e-29  Score=236.18  Aligned_cols=371  Identities=12%  Similarity=0.073  Sum_probs=261.6

Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCc-chHhHHHHHHH
Q 013707           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-KAMLTLPLTLS   91 (438)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Gr-k~~l~~~~~~~   91 (438)
                      +.+..++.+..+++..|.++.+..+       +.+.+..+.|++.+++.++..++++++|+++||+|| |+++.++.+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~-------~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~   79 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSK-------TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAG   79 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            5667778888999999999888864       457778899999999999999999999999999965 77888888888


Q ss_pred             HHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhh--------ccCCccchhHHHHHHHHHHHhhhhhhHhh
Q 013707           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVA--------DNISERQRASAFGILLGVLSASFVCGTLA  163 (438)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~g~~~g~~l  163 (438)
                      ++...+..+.++   ++.+++.|++.|+ +.+...+...++..        |..+...|.+..|      .+|.++||.+
T Consensus        80 ~~~~~~~~~~~~---~~~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l  149 (418)
T TIGR00889        80 ALLLFFAAQVTT---PAGMFPVLLANSL-AYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWA  149 (418)
T ss_pred             HHHHHHHHHhcC---HHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHH
Confidence            888888888888   8888999999998 66666666555432        3333344555555      3677778877


Q ss_pred             hHHhhH---HHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHH
Q 013707          164 ARFLST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (438)
Q Consensus       164 ~~~~~w---~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (438)
                      ++.++.   +.+|++.+++.++..+ ..+.+||+++.+++++                       ++. ++  ..+...+
T Consensus       150 ~g~l~~~~~~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~-----------------------~~~-~~--~~~~~~~  202 (418)
T TIGR00889       150 VSLLDIELSNIQLYITAGSSALLGV-FALTLPDIPVAKSTAK-----------------------MSI-KV--MLGLDAF  202 (418)
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHH-HHhcCCCCCCCccccc-----------------------cCH-HH--HhhhhHH
Confidence            776532   2356676666555544 3456787643221110                       000 00  0000112


Q ss_pred             hhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCCh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 013707          241 LLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNK--------NQFADLMLIAGLAGTISQLLFMPLLAPILGE  312 (438)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  312 (438)
                      ...|+|.++...+..++..........+.+.|.++ .|.++        .+.+...+...+..+++. +..+++.||+|+
T Consensus       203 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~-~~~g~l~dr~g~  280 (418)
T TIGR00889       203 ILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFI-LTIPFFLKRFGI  280 (418)
T ss_pred             HHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHhCc
Confidence            25566777777777777666666667778888876 45443        566888888888888888 888999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhHhccc-c---hHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHh-hHhhhhhhh
Q 013707          313 AKLLSLGLFAACINMFICSISWS-A---WVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCIS-GISSFANIV  386 (438)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~~  386 (438)
                      |+++..+.++..++...+....+ .   +..++ .++.+++.+...+....++.|.+|+++||+++|+.+ ....+|..+
T Consensus       281 r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i  360 (418)
T TIGR00889       281 KKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL  360 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999988888766665432 2   22233 566777778888888899999999999999999997 567899999


Q ss_pred             hhHhHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhh
Q 013707          387 SPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSF  431 (438)
Q Consensus       387 g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (438)
                      ||.+.|.++|+.+++...  .....+.+.+++.+++.+...+..+
T Consensus       361 Gp~l~G~l~~~~g~~~~~--~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       361 GYILSGVMVEKMFAYGTF--DWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHHHHHHHHHhccccCC--chHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999985432110  1122344444444444444444433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.98  E-value=3.2e-29  Score=230.98  Aligned_cols=379  Identities=17%  Similarity=0.172  Sum_probs=272.6

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchh
Q 013707           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG  123 (438)
Q Consensus        44 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  123 (438)
                      ++.+.+ ...+.+.+++.+|.++|+...|.++||+|||..+.++.++..++.++..++...+.+..++++|++.|+ ..+
T Consensus        54 s~~~~~-~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl-~~g  131 (485)
T KOG0569|consen   54 SDSTLD-LLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGL-ACG  131 (485)
T ss_pred             ChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HhH
Confidence            343343 456889999999999999999999999999999999999988888888877555559999999999999 889


Q ss_pred             hHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH------hhHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 013707          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (438)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~------~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~  197 (438)
                      ........++.|..|++.||......+.+..+|.++|..++.-      -.|++.+....+++++. +....++||+|+.
T Consensus       132 l~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~-l~~l~~~PESPk~  210 (485)
T KOG0569|consen  132 LSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ-LALLPFLPESPKY  210 (485)
T ss_pred             HHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH-HHHHhcCCCCcch
Confidence            9999999999999999999999999999999999998655532      36999998888886555 5556789999984


Q ss_pred             ----CCCCCCCcccchhccccccCCCCC------CCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHh-hhchhh
Q 013707          198 ----DDDDDLTRPIITEETEGVNQNESN------SPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGL-SEGGMQ  266 (438)
Q Consensus       198 ----~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  266 (438)
                          ++++++++++.+..+.+...+++.      .+.++.++++..++++.++.-..++.+...+...+...+ +.....
T Consensus       211 Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~  290 (485)
T KOG0569|consen  211 LLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIF  290 (485)
T ss_pred             HHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeH
Confidence                344444444544443332211110      011111112333555533322112222233333333333 333444


Q ss_pred             HHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcc-----c-chHHH
Q 013707          267 ASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW-----S-AWVPY  340 (438)
Q Consensus       267 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~  340 (438)
                      .+....+++ .|+++.++-+.....+....+.+ +++.++.||.|||++++.+..++.+..+++....     . .|..+
T Consensus       291 ~Yst~i~~~-aG~~~~~a~~an~~~g~v~~~~t-~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y  368 (485)
T KOG0569|consen  291 FYSTSIFKT-AGFTPEEAQYANLGIGIVNLLST-LVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSY  368 (485)
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            555555555 69999999999999999999998 8999999999999999999998888877766532     1 23332


Q ss_pred             H----HHHHHhhhh-hhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCCCCCchHHHHH
Q 013707          341 A----TTAFSVLVV-FATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCI  415 (438)
Q Consensus       341 ~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~  415 (438)
                      .    .+++.+..+ ...|..+-+.+|.+|++.|..+.+.....+.+.+.+-...+..+.+..         ..+.++..
T Consensus       369 ~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~---------g~~~filF  439 (485)
T KOG0569|consen  369 LCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI---------GPYVFILF  439 (485)
T ss_pred             HHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cchhhHHH
Confidence            2    223333333 336888899999999999999999999999999999999988888873         33556666


Q ss_pred             HHHHHHHHHHHHhhhhhhccC
Q 013707          416 GLASVRAFTYELLLSFYVFSR  436 (438)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~  436 (438)
                      .+.+.+..+..++..|+.+.|
T Consensus       440 ~i~~~~~~i~~~~~lPETkgr  460 (485)
T KOG0569|consen  440 VIPLAIFLIYLYRYLPETKGR  460 (485)
T ss_pred             HHHHHHHHHHHHHhCcccCCC
Confidence            677777777777766665543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.98  E-value=4.7e-29  Score=234.35  Aligned_cols=357  Identities=11%  Similarity=0.041  Sum_probs=254.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHH
Q 013707            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (438)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (438)
                      |.++.+....++...+.+...|.+|.+..+       +.+.+..+.|++.+.+.++..+++++.|+++||+|||+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~   74 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHD-------VNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWI   74 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            456667777888889999999999999864       4567778899999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHH---Hhcccc--hhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHh
Q 013707           88 LTLSIIPLAIL---AYRRSI--SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (438)
Q Consensus        88 ~~~~~~~~~~~---~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  162 (438)
                      ....+++....   .+.+..  .......+.+++.|+ +.+...+...++..|..+  +++..++......++|.++||.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~  151 (396)
T TIGR00882        75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGF-VFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCAS  151 (396)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHH
Confidence            76665544322   222210  113445677888888 777777778888777543  3445677788888899999999


Q ss_pred             hhHHh---hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHH
Q 013707          163 AARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (438)
Q Consensus       163 l~~~~---~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (438)
                      +++.+   +||.+|++.+.+.++..+..+...||++++++.+ +              . .+   .++   +.++.++. 
T Consensus       152 ~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------~-~~---~~~---~~~~~~~~-  208 (396)
T TIGR00882       152 IAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVA-N--------------A-LG---ANA---SAFSLKLA-  208 (396)
T ss_pred             HHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhh-c--------------c-cc---ccc---CCCCHHHH-
Confidence            98864   8999999998887766555444444433221110 0              0 00   000   01112332 


Q ss_pred             HhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHc---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 013707          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF---HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (438)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  316 (438)
                      +...|+|.++...+..+...........+.+.|+++.+   +.+..+.|...+...+...++. ...+++.||+++|+.+
T Consensus       209 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~-~~~g~l~~r~g~~~~l  287 (396)
T TIGR00882       209 LELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIM-FCAPLIINRIGAKNAL  287 (396)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhH
Confidence            23445666666655555555555556667788887765   4566677888888888888887 7788999999999999


Q ss_pred             HHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHH-HhhHhhhhhhhhhHhHHHH
Q 013707          317 SLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGC-ISGISSFANIVSPLIFSPL  394 (438)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~g~~~~g~l  394 (438)
                      ..+..+.++........++.+..+. ..+.+++..........+..+..|++.+++..+. .+....+|+.++|.+.|++
T Consensus       288 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l  367 (396)
T TIGR00882       288 LIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNM  367 (396)
T ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHH
Confidence            9998888888877777767665554 4556666555555555667777888888887776 6788999999999999999


Q ss_pred             HHHH
Q 013707          395 TALF  398 (438)
Q Consensus       395 ~~~~  398 (438)
                      .|..
T Consensus       368 ~~~~  371 (396)
T TIGR00882       368 YDSI  371 (396)
T ss_pred             HHhc
Confidence            9974

>TIGR00901 2A0125 AmpG-related permease

Probab=99.97  E-value=2.8e-29  Score=232.66  Aligned_cols=318  Identities=15%  Similarity=0.074  Sum_probs=238.6

Q ss_pred             hhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhccccccc-----CcchHh-HHHHHHHHHHHHH
Q 013707           24 TMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKAML-TLPLTLSIIPLAI   97 (438)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-----Grk~~l-~~~~~~~~~~~~~   97 (438)
                      .+...+.+|.+.+        |.+++..+.|+..+. .+...+ .+++|+++||+     ||||.+ +.+.+..++....
T Consensus         4 ~~~~~~~~~~~~~--------~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~   73 (356)
T TIGR00901         4 LGLVGNTLPYWLR--------SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLI   73 (356)
T ss_pred             chhHHhHHHHHHH--------HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHH
Confidence            4566778888866        557777888988655 555554 89999999998     898974 5677777777777


Q ss_pred             HHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH----hh-----
Q 013707           98 LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LS-----  168 (438)
Q Consensus        98 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~-----  168 (438)
                      .++.++...++.+....++.+. +.+...++..+++.|++|+|+|+++.++...+.++|.++++.+++.    ++     
T Consensus        74 l~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~  152 (356)
T TIGR00901        74 LSFLVPSTDLPLLAGLAFLIAF-FSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGL  152 (356)
T ss_pred             HHcCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence            7777554447777888888888 7788889999999999999999999999999999999999988865    46     


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhccc
Q 013707          169 ---TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (438)
Q Consensus       169 ---w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (438)
                         ||.+|++.++..++..+..++..||++++++++                        ++   +..+.++.++.++++
T Consensus       153 ~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~------------------------~~---~~~~~~~~~~~~~~~  205 (356)
T TIGR00901       153 ITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVP------------------------KP---LTQAVLKPIREFFQR  205 (356)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccc------------------------hh---HHHHHHHHHHHHHHh
Confidence               999999998877665544444456643211100                        00   001122233345555


Q ss_pred             ch---hHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 013707          246 VT---LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGL-AGTISQLLFMPLLAPILGEAKLLSLGLF  321 (438)
Q Consensus       246 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~  321 (438)
                      |.   ++...+..++..........+.|.|+++ +|+++.+.+.+....+. ..+++. ++.+++.||+|+|+.+..+.+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~-~~~g~l~~r~g~~~~l~~~~~  283 (356)
T TIGR00901       206 KNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGG-LIGGIIMQPLNILYALLLFGI  283 (356)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHH
Confidence            54   6666666666777778888999999988 89999999988887774 455666 888999999999998888888


Q ss_pred             HHHHHHHHhHhc-----------ccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhh
Q 013707          322 AACINMFICSIS-----------WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISS  381 (438)
Q Consensus       322 ~~~~~~~~~~~~-----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  381 (438)
                      +.+++...+.+.           ++.+.... .++.+++.+...+...++.+|.+|+++||+.+|+.++..+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       284 VQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            777766655442           12233333 4566888899999999999999999999999999887764

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.97  E-value=7.7e-31  Score=233.19  Aligned_cols=365  Identities=14%  Similarity=0.162  Sum_probs=262.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHh
Q 013707            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (438)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l   84 (438)
                      ...+.+..+++...+..++.+.+..+.+...        +.++++....|++++.+.+.+.+++|+.|.++|||+||+++
T Consensus        30 ~~~~~l~il~~vnlmny~Dr~~iagv~~~v~--------~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~  101 (493)
T KOG1330|consen   30 SPTLTLVILCLVNLMNYADRYTIAGVLKEVQ--------TYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVI  101 (493)
T ss_pred             cchHHHHHHHHHHHHHHhhhhhhhhhhHHHH--------HhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEE
Confidence            3356677888999999999998888777663        35677778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhh
Q 013707           85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (438)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  164 (438)
                      .++..++.++.++++++..   +|++.++|.+.|+ |.+...|..+++++|.+|+++|++++++++.+..+|..+|.+.+
T Consensus       102 ~vG~~iW~~Av~~~~fs~~---Fwq~~l~R~~vGi-GeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvg  177 (493)
T KOG1330|consen  102 AVGIFIWTLAVFASGFSNH---FWQVLLCRGFVGI-GEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVG  177 (493)
T ss_pred             eeHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcc-chhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEee
Confidence            9999999999999999977   9999999999999 99999999999999999999999999999999999988887766


Q ss_pred             HHh-----hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHH
Q 013707          165 RFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (438)
Q Consensus       165 ~~~-----~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (438)
                      ...     .||+.|+..+++..++.++..++.+|+++...++.|                   ...+..+.....+||..
T Consensus       178 s~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~-------------------~~~~~~~~~ts~~kDl~  238 (493)
T KOG1330|consen  178 SVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVD-------------------GENKMVKPFTSVWKDLK  238 (493)
T ss_pred             eeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccccc-------------------cCCcCCCCccchHHHHH
Confidence            553     499999999999999999988899988764333210                   00011122233455533


Q ss_pred             HhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHh---HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh---
Q 013707          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKA---QFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEA---  313 (438)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  313 (438)
                       .+.+++.+....+......+....+.-+.|.+...   ..|.+..+..++..+...++.+|. +.+|.++||+.++   
T Consensus       239 -~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGv-l~Ggiisd~~~~~~~~  316 (493)
T KOG1330|consen  239 -VLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGV-LFGGIISDKLSRIFPN  316 (493)
T ss_pred             -HHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhh-eehHHHHHHHHHhccc
Confidence             34445666666666666666666665555554433   235555555566667777777777 7888888884321   


Q ss_pred             -hHHHHHHH------HHHHHHHHh-Hhcc--cchHHHHHHHHHhhhhhhHHH-HHHHHhhcCCCCcchhHHHHHhhHhh-
Q 013707          314 -KLLSLGLF------AACINMFIC-SISW--SAWVPYATTAFSVLVVFATPS-FRSIVSKQVGPNEQGKAQGCISGISS-  381 (438)
Q Consensus       314 -~~~~~~~~------~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~-  381 (438)
                       .......+      ...+.++.+ ....  +.+..++.+++|......... ...+..+.+|+++|.++.++...+.. 
T Consensus       317 ~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~  396 (493)
T KOG1330|consen  317 SGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHI  396 (493)
T ss_pred             ccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHH
Confidence             11111111      111111111 1111  222333345555544444433 33456788999999999999887764 


Q ss_pred             hhhhhhhHhHHHHHHHHhcCC
Q 013707          382 FANIVSPLIFSPLTALFLSKG  402 (438)
Q Consensus       382 ~g~~~g~~~~g~l~~~~~~~~  402 (438)
                      +|.+-+|.+.|.+.|+..+++
T Consensus       397 fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  397 FGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             hccCCCcceehhHHHHhhCCC
Confidence            455556669999999876554

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.7e-30  Score=223.82  Aligned_cols=351  Identities=18%  Similarity=0.156  Sum_probs=275.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHhhC------------------------------------------CCCccchh
Q 013707           11 SHLFVTVFLWGFATMMVVPAITDVTMMALC------------------------------------------PGLDECSL   48 (438)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~   48 (438)
                      ..+....+++.+-...+.|.+|.|..|..+                                          ....+.+.
T Consensus        24 viv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~  103 (464)
T KOG3764|consen   24 VIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAISLDR  103 (464)
T ss_pred             EEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccCccc
Confidence            345677788888899999999999988542                                          00133455


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhh
Q 013707           49 AIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCL  128 (438)
Q Consensus        49 s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~  128 (438)
                      +..++|++.+...+.+++.+|+.|.+.||+|+|..+++++.....++++.++.++   ++.++++|.+||+ +++....+
T Consensus       104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s---y~~l~vAR~LQgv-gsA~~~ts  179 (464)
T KOG3764|consen  104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS---YPMLFVARSLQGV-GSAFADTS  179 (464)
T ss_pred             cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch---hHHHHHHHHHhhh-hHHHHHhh
Confidence            6688999999999999999999999999999999999999999999999999999   9999999999999 99999999


Q ss_pred             hhHhhhccCCcc-chhHHHHHHHHHHHhhhhhhHhhhHHh----hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCC
Q 013707          129 ALAYVADNISER-QRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDL  203 (438)
Q Consensus       129 ~~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  203 (438)
                      ..++++|.+|++ ||++++|+...+.++|.++||.+|+.+    |.+.+|.+.+++.++...+..+.+++++.+++..  
T Consensus       180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~--  257 (464)
T KOG3764|consen  180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDST--  257 (464)
T ss_pred             hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcccc--
Confidence            999999999965 689999999999999999999999984    8999999999998888777777666654433221  


Q ss_pred             CcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhH
Q 013707          204 TRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQ  283 (438)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  283 (438)
                                                .+..++++    +.++|..+.........+.........++.+..|.+.-+..+
T Consensus       258 --------------------------~~~~~~~~----Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~  307 (464)
T KOG3764|consen  258 --------------------------EQGTPMWS----LLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWE  307 (464)
T ss_pred             --------------------------ccCccHHH----HHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcc
Confidence                                      11123333    445777777777777777777788888999999988855658


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhhHHHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHH---H
Q 013707          284 FADLMLIAGLAGTISQLLFMPLLAPILG--EAKLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSF---R  357 (438)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~  357 (438)
                      .|..+....+...++. .+.+.+.||++  |......+.+..++......+.++...+++ ....+++.+......   .
T Consensus       308 ~G~~fLp~~~~y~ig~-~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l  386 (464)
T KOG3764|consen  308 VGLAFLPASLSYAIGT-NLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTL  386 (464)
T ss_pred             eeeeecccccchhccC-chHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhh
Confidence            8999888899999988 77789999999  544555666666666666666666555444 333444433333222   2


Q ss_pred             HHHhhcCCCC---cchhHHHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          358 SIVSKQVGPN---EQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       358 ~~~~~~~~~~---~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      .+..|....+   .-|.+.++.....++|.++||.++|.+++..
T Consensus       387 ~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~i  430 (464)
T KOG3764|consen  387 GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAI  430 (464)
T ss_pred             HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeeh
Confidence            2333322223   5689999999999999999999999998864

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=6e-27  Score=205.47  Aligned_cols=350  Identities=16%  Similarity=0.122  Sum_probs=285.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHH
Q 013707            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (438)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (438)
                      -.+..+....++..+......+.+|.+.+        .++++..+.++++.+++.++.+.+++.|++.+|+|+|+.++.+
T Consensus        13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~--------~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lg   84 (422)
T COG0738          13 LAFVLLTSLFFLWGFITCLNDILIPHLKE--------VFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLG   84 (422)
T ss_pred             eHHHHHHHHHHHHHHHhhcchhhHHHHHH--------HhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHH
Confidence            34455556667777888888889988855        5678888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh
Q 013707           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (438)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~  167 (438)
                      +.++++++.+..-+.+...+..++++-++.|. |.+...++.+.+++...|+++..+.+++.+..+++|.++||.+++.+
T Consensus        85 L~l~avg~~lF~pAa~~~~y~~FL~~lFila~-Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~l  163 (422)
T COG0738          85 LLLYAVGAALFWPAASSKSYGFFLVALFILAS-GIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSL  163 (422)
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh-hhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99999999998755554448999999999999 89999999999999999999999999999999999999999998763


Q ss_pred             -----------------------hHHHHHHHHHHHHHHHHHHHH-HhcccCCCCCCCCCCCcccchhccccccCCCCCCC
Q 013707          168 -----------------------STTSAFQAATIVSMLAAAYMR-VFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSP  223 (438)
Q Consensus       168 -----------------------~w~~~f~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (438)
                                             .|+.+|...+....+..+... ...|+.++...++                      
T Consensus       164 ils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~----------------------  221 (422)
T COG0738         164 ILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSL----------------------  221 (422)
T ss_pred             HHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccc----------------------
Confidence                                   256777777665443332221 1222222211111                      


Q ss_pred             CCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 013707          224 VKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFM  303 (438)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  303 (438)
                           .+..+.   ....++++|.++...+..|++........++++.|+.+..|.+..+.+...+....+.++++ +++
T Consensus       222 -----~~~~~~---~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGR-Fig  292 (422)
T COG0738         222 -----GASGSA---GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGR-FIG  292 (422)
T ss_pred             -----cccccc---hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH-HHH
Confidence                 000000   23346788999999999999999999999999999999889999999999999999999999 777


Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhh
Q 013707          304 PLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFA  383 (438)
Q Consensus       304 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  383 (438)
                      .++.+|++..|.+........+.++...+.++.+.++...+.|++.+..+|+.++...+..| ++. +..|..-.+..+|
T Consensus       293 ~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~t-s~~s~~l~maivG  370 (422)
T COG0738         293 SALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHT-SVGSGLLVMAIVG  370 (422)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccc-cccceeeeeheec
Confidence            78888999999998888888888888888888888888899999999999999999999998 443 3444456677899


Q ss_pred             hhhhhHhHHHHHHHHh
Q 013707          384 NIVSPLIFSPLTALFL  399 (438)
Q Consensus       384 ~~~g~~~~g~l~~~~~  399 (438)
                      +++-|.+.|++.|..+
T Consensus       371 GAiiP~l~G~i~d~~g  386 (422)
T COG0738         371 GAIIPPLQGVIADMFG  386 (422)
T ss_pred             chHHHHHHHHHHHhhh
Confidence            9999999999999854

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.97  E-value=3.2e-27  Score=225.35  Aligned_cols=380  Identities=10%  Similarity=-0.013  Sum_probs=262.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccc-cCcchH
Q 013707            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAM   83 (438)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grk~~   83 (438)
                      +++|.++.+++..+...++.....+.+|.|.++.     .+++.+..+.|++.+.+.++..+++++.|+++|| +|||++
T Consensus         7 ~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~-----~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~   81 (475)
T TIGR00924         7 GHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQ-----AGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT   81 (475)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH
Confidence            4467788888889999999999999999998642     1367788899999999999999999999999999 899999


Q ss_pred             hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccc---hhHHHHHHHHHHHhhhhhh
Q 013707           84 LTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ---RASAFGILLGVLSASFVCG  160 (438)
Q Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g  160 (438)
                      +.++.++.+++.++.+++++   .+.+++.|.+.|+ +.+...|...++++|++|+++   |++++++.....++|..+|
T Consensus        82 l~~~~~~~~~g~~~~~~~~~---~~~~~~~~~l~g~-g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig  157 (475)
T TIGR00924        82 MVLGGIVLMLGHFMLAMSIY---PDLIFYGLGTIAV-GSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFIS  157 (475)
T ss_pred             HHHHHHHHHHHHHHHHhccc---HhHHHHHHHHHHh-ccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHH
Confidence            99999999999999999888   7888899999999 888888999999999998764   8889999999999999999


Q ss_pred             HhhhHHh----hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCC-Ccccc-hhccc-------------cccCCCCC
Q 013707          161 TLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDL-TRPII-TEETE-------------GVNQNESN  221 (438)
Q Consensus       161 ~~l~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~-------------~~~~~~~~  221 (438)
                      |.+++++    +|++.|++.++..++. ++.+...++..++.+++++ .++.. +....             ......+.
T Consensus       158 ~~l~g~l~~~~g~~~~f~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (475)
T TIGR00924       158 PLLAGVIAENYGYHVGFNLAAVGMVIG-LLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHV  236 (475)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHHH-HHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9998874    8999999887654443 3333333332211111000 00000 00000             00000000


Q ss_pred             CCCCc-------------cccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhH----H
Q 013707          222 SPVKI-------------PVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQ----F  284 (438)
Q Consensus       222 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~  284 (438)
                      ...+.             .....++...+  ....|.+.+..+++...+....+....+.++.+.++..+.+...    .
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~  314 (475)
T TIGR00924       237 VIANILLMTVTLAVIIFFFRLAFKPRLDA--VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPV  314 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCH--HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECH
Confidence            00000             00000000000  00011122444555556666677777777888887765544222    5


Q ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHh-hchhhH--HHHHHHHHHHHHHHhHh---------cccchHHHH-HHHHHhh
Q 013707          285 ADLMLIAGLAGTISQLLFMP---LLAPI-LGEAKL--LSLGLFAACINMFICSI---------SWSAWVPYA-TTAFSVL  348 (438)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~---~l~~~-~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~  348 (438)
                      +++.+..++..++.+.++..   ++.|| .+.+..  +.+|+++.++++....+         ..+.+..+. .++.+++
T Consensus       315 ~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~g  394 (475)
T TIGR00924       315 IWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLG  394 (475)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH
Confidence            67888888888887733332   33333 222333  36788888888777664         234454444 6888999


Q ss_pred             hhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          349 VVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      .....|..+++..+..|++.||+.+|+......+|..+++.+.....+
T Consensus       395 e~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~  442 (475)
T TIGR00924       395 ELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAV  442 (475)
T ss_pred             HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999888888877776544

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.97  E-value=2.5e-27  Score=225.97  Aligned_cols=344  Identities=14%  Similarity=0.087  Sum_probs=256.1

Q ss_pred             HHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccc----cCcch-HhHHHHHHHHH
Q 013707           19 LWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKA-MLTLPLTLSII   93 (438)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grk~-~l~~~~~~~~~   93 (438)
                      ...+..++..+.++.+..+       +.++++.+.|++.++..+...+..|+.|+++||    +|||| .++.+....++
T Consensus        10 ~~~~~~~~~~~~l~~~~~~-------~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i   82 (437)
T TIGR00792        10 GNNFIFAIVSTYLLFFYTD-------VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSI   82 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHH
Confidence            3444455666666666543       567888999999999999999999999999998    68755 56678788888


Q ss_pred             HHHHHHhcccch---hHHHHHHHHHhhhhcchhhHhhhhhHhhhccC-CccchhHHHHHHHHHHHhhhhhhHhhhH----
Q 013707           94 PLAILAYRRSIS---FFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAAR----  165 (438)
Q Consensus        94 ~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l~~----  165 (438)
                      +.+++...++.+   ....+++.+++.++ +.+...+...++..|.. +++||++..++.+....+|..+++.+.+    
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~  161 (437)
T TIGR00792        83 VLVLLFTTPDFSATGKLVYAYITYILLGL-FYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVS  161 (437)
T ss_pred             HHHHHHhCCCCCcchHHHHHHHHHHHHHH-HHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888777776522   24566778888888 66777777888999988 4689999999988888787665543321    


Q ss_pred             -------HhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHH
Q 013707          166 -------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL  238 (438)
Q Consensus       166 -------~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (438)
                             ..+||..+.+.+++.++..+...+..||++++.+++                           ++++.+.++.
T Consensus       162 ~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~---------------------------~~~~~~~~~~  214 (437)
T TIGR00792       162 YFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKN---------------------------IEKKLSLKQI  214 (437)
T ss_pred             HhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc---------------------------cccCCCHHHH
Confidence                   237999999998887777666666777754221110                           0011234555


Q ss_pred             HHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 013707          239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSL  318 (438)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  318 (438)
                      .+.++++|.++...+..++..........+.+.|.++.++ ++.+.+.+.....++.+++. ++.+++.||+|+|+.+..
T Consensus       215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~g~~~~~~~  292 (437)
T TIGR00792       215 FKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGV-LLFPRLVKKFGRKILFAG  292 (437)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHH
Confidence            6667788888887777777777766666666677766555 55566777777778888887 788999999999999999


Q ss_pred             HHHHHHHHHHHhHhcc-cchHHHH-HHHHHhhhhhhHHHHHHHHhhcCC-------CCcchhHHHHHhhHhhhhhhhhhH
Q 013707          319 GLFAACINMFICSISW-SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVG-------PNEQGKAQGCISGISSFANIVSPL  389 (438)
Q Consensus       319 ~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~~g~~  389 (438)
                      +..+..++.+.+.+.+ +.+.... ..+.+++.+...+..+++.+|..|       ++.+|++.|+.+....+|..+++.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~  372 (437)
T TIGR00792       293 GILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGF  372 (437)
T ss_pred             HHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHH
Confidence            9888888877766654 3333333 466778888888888899888765       456799999999999999999999


Q ss_pred             hHHHHHHHHh
Q 013707          390 IFSPLTALFL  399 (438)
Q Consensus       390 ~~g~l~~~~~  399 (438)
                      +.|.+.+..+
T Consensus       373 i~g~ll~~~G  382 (437)
T TIGR00792       373 LVGLILGIIG  382 (437)
T ss_pred             HHHHHHHHcC
Confidence            9999999754

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.97  E-value=4.2e-26  Score=213.93  Aligned_cols=348  Identities=14%  Similarity=0.096  Sum_probs=241.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHH--HHHHHHHHHHHhhhhcc-cccccCcchHhHH
Q 013707           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQ--QAIIGLGTLVMMPVIGN-LSDQYGRKAMLTL   86 (438)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~s~~~l~~~~~~~~~G~-l~Dr~Grk~~l~~   86 (438)
                      +..+....+...+..++..|.+|.+.+|        .+.+..++|++  .+...+...+.+|+++. ..||+||||.+++
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~--------~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~   74 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLRE--------DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVL   74 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHH
Confidence            3445556677888889999999999884        36777888997  46778889899999955 7999999999766


Q ss_pred             HHHH-HHHHHHHHH-hcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhh
Q 013707           87 PLTL-SIIPLAILA-YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (438)
Q Consensus        87 ~~~~-~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  164 (438)
                      ...+ .+....... +........+++..-++.++ ..+...+...++..|..++++++...+....+..+|.++|+...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~  153 (390)
T TIGR02718        75 PMQCLVSACLASLALVGPDVAGAGWAVGLLACASL-ASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGT  153 (390)
T ss_pred             HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5533 222222222 21221112333444555556 66778888999999999888888888888888888998888654


Q ss_pred             H----HhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHH
Q 013707          165 R----FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (438)
Q Consensus       165 ~----~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (438)
                      +    .++||.+|++.+.+.++..+...+ .+|++++++++                         + .+   ..++.. 
T Consensus       154 ~~l~~~~gw~~~f~~~a~l~~~~~~~~~~-~~~~~~~~~~~-------------------------~-~~---~~~~~~-  202 (390)
T TIGR02718       154 LVLFGKFGQRPAFLLVACVPLASLVCVLW-LKDRAVASPEA-------------------------P-LA---RRASLF-  202 (390)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHH-cCCCCcCcccc-------------------------c-hh---hHHHHH-
Confidence            4    469999999999887665555433 44332211110                         0 00   112222 


Q ss_pred             hhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHH
Q 013707          241 LLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGL  320 (438)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  320 (438)
                      ...|+|.++......++..........+.+.|++| .|+++++.|.+....+....+.+.+..+++.||+|+|+.+..+.
T Consensus       203 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~  281 (390)
T TIGR02718       203 RFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGV  281 (390)
T ss_pred             HHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            24556667777777777777788888899999988 69999999998888776444443388899999999999888777


Q ss_pred             HHHHHHHHHhHh-c-----ccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCC-CcchhHHHHHhhHhhhhhhhhhHhHH
Q 013707          321 FAACINMFICSI-S-----WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGP-NEQGKAQGCISGISSFANIVSPLIFS  392 (438)
Q Consensus       321 ~~~~~~~~~~~~-~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~g~~~~g  392 (438)
                      .+.++..+.... .     .+....+. ..+.++..+...+..++...+..++ +++|+.++..+...++|..+||.+.|
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G  361 (390)
T TIGR02718       282 GLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAG  361 (390)
T ss_pred             HHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655333222211 1     11122222 2333455677777788887777776 88999999999999999999999999


Q ss_pred             HHHHHH
Q 013707          393 PLTALF  398 (438)
Q Consensus       393 ~l~~~~  398 (438)
                      .++|+.
T Consensus       362 ~l~~~~  367 (390)
T TIGR02718       362 YLTDRF  367 (390)
T ss_pred             HHHHHH
Confidence            999974

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.96  E-value=4.8e-26  Score=217.24  Aligned_cols=375  Identities=10%  Similarity=0.056  Sum_probs=250.2

Q ss_pred             CchHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccc-cC
Q 013707            1 MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YG   79 (438)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~G   79 (438)
                      |++++.+|.++.++...+...++.....+.++.|.++       +++.+....+++.+.+.....+..++.|+++|| +|
T Consensus         7 ~~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~-------~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G   79 (489)
T PRK10207          7 MGLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVK-------QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLG   79 (489)
T ss_pred             cchhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccc
Confidence            3344446778888888888999999999999999865       445566677888888888888888999999999 99


Q ss_pred             cchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCcc--chhHHHHHHHHHHHhhh
Q 013707           80 RKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER--QRASAFGILLGVLSASF  157 (438)
Q Consensus        80 rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~  157 (438)
                      |||+++.+.++++++.+.++++++.  ...++++|.++|+ +.|...|...+++.|.+|++  +|.+++++...+.++|.
T Consensus        80 ~r~~~~~g~~~~~~g~~~~~~~~~~--~~ll~~~~~l~~i-g~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~  156 (489)
T PRK10207         80 TKRTIVLGAIVLAIGYFMTGMSLLK--PDLIFIALGTIAV-GNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGS  156 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHh-ccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHH
Confidence            9999999999999999999998762  2235589999999 88999999999999999876  45778999999999999


Q ss_pred             hhhHhhhHH----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-----CCCCCCcccchhc--------c-ccccCCC
Q 013707          158 VCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPND-----DDDDLTRPIITEE--------T-EGVNQNE  219 (438)
Q Consensus       158 ~~g~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--------~-~~~~~~~  219 (438)
                      .+||.++++    +|||+.|++.++. .+..++.+...++..++.     +++.|.++.....        . ....+..
T Consensus       157 ~~g~~l~g~l~~~~gw~~~F~i~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~  235 (489)
T PRK10207        157 LISLSLAPVIADKFGYSVTYNLCGAG-LIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNV  235 (489)
T ss_pred             HHHHHHHHHHHHhhChHHHHHHHHHH-HHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence            888887776    4999999987543 333333333334322111     1111111110000        0 0000000


Q ss_pred             CCCCCC------------ccccccCCchhHHHHhhcccchhHHHHH--HHHHHHhhhchhhHHHHHHHHhHcCCChh---
Q 013707          220 SNSPVK------------IPVCKKIPSIRDLICLLRSSVTLSQAAV--VAFFSGLSEGGMQASFLYFLKAQFHFNKN---  282 (438)
Q Consensus       220 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---  282 (438)
                      ......            -.++++. +      ...|+|.+....+  ...+....+......++.|.++..+.+..   
T Consensus       236 ~~~~~~~~~~~~i~~~~f~~~~~~~-~------~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~  308 (489)
T PRK10207        236 EVANLVLIVLSIVVTIIFFREAFKL-D------KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFS  308 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcC-C------HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceE
Confidence            000000            0000000 0      1223343333222  23444455555667778888753333210   


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh-------HHHHHHHHHHHHHHHhH-----hc-----ccchHHHH-HH
Q 013707          283 -QFADLMLIAGLAGTISQLLFMPLLAPILGEAK-------LLSLGLFAACINMFICS-----IS-----WSAWVPYA-TT  343 (438)
Q Consensus       283 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~-~~  343 (438)
                       ..+.+.+...+..++.+ ++.+++.||+++|+       -+..|+++.+++++.+.     ..     .+.+.... ..
T Consensus       309 i~~~~~~~~n~~~iii~~-pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~  387 (489)
T PRK10207        309 INPVSFQALNPFWVVVAS-PILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYL  387 (489)
T ss_pred             ECHHHHHhHhHHHHHHHH-HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHH
Confidence             12344445555665666 66679999998886       36677777777765331     21     12233333 57


Q ss_pred             HHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHH
Q 013707          344 AFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  394 (438)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l  394 (438)
                      +.+++.....|...+.+.+..|++.+|.++|+.+....+|+.+|..+.+..
T Consensus       388 l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        388 FQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            789999999999999999999999999999999999999999988777654

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.96  E-value=3.6e-25  Score=206.86  Aligned_cols=394  Identities=13%  Similarity=0.069  Sum_probs=279.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhccccc----ccCcchHhH
Q 013707           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRKAMLT   85 (438)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D----r~Grk~~l~   85 (438)
                      +..+....+-..+++++..+.++.|.+        +.+.+..+.+++..+..+...+.+|+.|.++|    |+||||+++
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl~--------~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~i   77 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYVQ--------ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFI   77 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHH
Confidence            344455555667788888899998876        44667788999999999999999999999999    599999988


Q ss_pred             HH-HHHHHHHHHHHHhcccchh--------------HHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccch--hHHHHH
Q 013707           86 LP-LTLSIIPLAILAYRRSISF--------------FYAYYALRTLTAMVCEGSINCLALAYVADNISERQR--ASAFGI  148 (438)
Q Consensus        86 ~~-~~~~~~~~~~~~~~~~~~~--------------~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~  148 (438)
                      .+ .....++..+.+++++...              .+..+++-.+..+ +.....+...++++|.+|+++|  +.++++
T Consensus        78 l~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~-~~n~~~~p~rALiaDl~p~~~~~~~~a~~~  156 (477)
T TIGR01301        78 AAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDV-ANNMLQGPCRAFLADLTGGDARRTRIANAY  156 (477)
T ss_pred             HHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccccCchhHHHHHHHHH
Confidence            75 5666667777777765210              0222333334445 5666777889999999998865  579999


Q ss_pred             HHHHHHhhhhhhHhhhHHh-------------------hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccch
Q 013707          149 LLGVLSASFVCGTLAARFL-------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIIT  209 (438)
Q Consensus       149 ~~~~~~~g~~~g~~l~~~~-------------------~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (438)
                      .+...++|.++|+.++++.                   +.|..|++.+++.+++.++..+..||.+..++++.+ +    
T Consensus       157 ~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~-~----  231 (477)
T TIGR01301       157 FSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI-N----  231 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch-h----
Confidence            9999999999999988763                   347789998888888888888889997653222100 0    


Q ss_pred             hccccccCCCCCCCCCccccccCCchhHHHHhhcc-cchhHHHHHHHHHHHhhhchhhHHHHHHHH-hHcCCChhH----
Q 013707          210 EETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS-SVTLSQAAVVAFFSGLSEGGMQASFLYFLK-AQFHFNKNQ----  283 (438)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~----  283 (438)
                             ++.++    .++.+....+++.++.+++ +|.++.+++..++.++++..+..+.+.|.. +.++-++.+    
T Consensus       232 -------~~~~~----~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y  300 (477)
T TIGR01301       232 -------SEAAP----PSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKY  300 (477)
T ss_pred             -------hhccc----ccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHH
Confidence                   00000    0000111244555555443 678899999999999999999888888875 456543211    


Q ss_pred             -H-----HHHHHHHHHHHHHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHhHhccc---------------------
Q 013707          284 -F-----ADLMLIAGLAGTISQLLFMPLLAPILGE-AKLLSLGLFAACINMFICSISWS---------------------  335 (438)
Q Consensus       284 -~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------------  335 (438)
                       .     .+.....++...+.+ ++..++.+|+|+ |+.-..+.++.++++....+.++                     
T Consensus       301 ~~gvr~G~~~l~~~s~~~~i~s-~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  379 (477)
T TIGR01301       301 DDGVRAGAFGLMLNSVVLGITS-IGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGI  379 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhh
Confidence             1     122334444445555 667889999985 66667887777777777664332                     


Q ss_pred             chHHH-HHHHHHhhhhhhHHHHHHHHhhcCCC--CcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCCCCCchHH
Q 013707          336 AWVPY-ATTAFSVLVVFATPSFRSIVSKQVGP--NEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSI  412 (438)
Q Consensus       336 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~  412 (438)
                      .+..+ ...+.|+.........++++++..|+  +..|..+|+.|....+.+.+.....|.+.+.+++      .....+
T Consensus       380 ~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~------~~~~~~  453 (477)
T TIGR01301       380 KASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG------GNLPAF  453 (477)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC------CCeeHH
Confidence            12223 36778999999999999999999995  4569999999999999999999999986666543      233456


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcc
Q 013707          413 MCIGLASVRAFTYELLLSFYVFS  435 (438)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~  435 (438)
                      .++++..+++.+..+++.|+.++
T Consensus       454 ~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       454 VVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCC
Confidence            77888888888888777776543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.1e-26  Score=217.31  Aligned_cols=314  Identities=15%  Similarity=0.041  Sum_probs=240.3

Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcch
Q 013707           43 LDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE  122 (438)
Q Consensus        43 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  122 (438)
                      .+|.+....+.+.+.+++.++++++.++.|.+.||++-.+.+....+.+++..++.....|   ++.+++.|++.|+ .+
T Consensus        73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s---~~~~ialr~llGl-~e  148 (495)
T KOG2533|consen   73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS---FPGLIALRFLLGL-FE  148 (495)
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHH-Hh
Confidence            4566777788999999999999999999999999999999999888888888888888888   9999999999999 89


Q ss_pred             hhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH----------hhHHHHHHHHHHHHHHHHHHHHHhcc
Q 013707          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----------LSTTSAFQAATIVSMLAAAYMRVFLK  192 (438)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----------~~w~~~f~~~~~~~~i~~~~~~~~~~  192 (438)
                      +..+|....+++.|+.++||+..++++.+..++|.++|++++..          .|||+.|++.+++.++..++..+.+|
T Consensus       149 s~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  149 SGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             cccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence            99999999999999999999999999999999999999988865          28999999999999999889999999


Q ss_pred             cCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHH
Q 013707          193 DDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYF  272 (438)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (438)
                      +.|.+..-.++.++.....+.+..      +.....++  .+.++.. ...++|.+|...+..++.....++..+++|.|
T Consensus       229 ~~P~~~~fl~~~ek~~~~~~~~~~------~~~~~~~~--~~~~~~~-~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~  299 (495)
T KOG2533|consen  229 DNPSKAWFLTDEEKELVVERLRES------PSGGIENK--FKWKGFK-EALKDPGVWPFSLCYFFLKLVNYGFSYWLPLY  299 (495)
T ss_pred             CChhhccccchHHHHHHHHHHHhc------cCCCcccc--cCHHHHH-HHHhchhHHHHHHHHHHHhhccccHHHHHHHH
Confidence            998755222111111000000000      00000000  2333323 35567889999999999999999999999999


Q ss_pred             HHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hchhhHHHHHHHHH-HHHHHHhHhcccchHHHH-HHHHH
Q 013707          273 LKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI----LGEAKLLSLGLFAA-CINMFICSISWSAWVPYA-TTAFS  346 (438)
Q Consensus       273 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~  346 (438)
                      +++..|+|..+...+.....++++++. ++++.++||    ..+|........+. .++...+........... .....
T Consensus       300 l~~~~~~s~~~a~~ls~~~~~~g~v~~-i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~  378 (495)
T KOG2533|consen  300 LKSNGGYSELQANLLSTPYDVGGIVGL-ILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGP  378 (495)
T ss_pred             HHcCCCcChHHhccccchHHhhhHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcc
Confidence            999667999999999999999999998 889999999    44555544444433 344344444443444443 33444


Q ss_pred             hhhhhhHHHHHHHHhhcCCCCcch
Q 013707          347 VLVVFATPSFRSIVSKQVGPNEQG  370 (438)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~g  370 (438)
                      .+.....+......++...++.|.
T Consensus       379 ~~~~~~~~~~~~w~s~~~~g~~k~  402 (495)
T KOG2533|consen  379 YGLIATAIIALSWTSANLAGNTKA  402 (495)
T ss_pred             hhhHHHHHHHHhhccccccchHHh
Confidence            556666777778888777655554

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.95  E-value=9.1e-25  Score=201.94  Aligned_cols=344  Identities=20%  Similarity=0.210  Sum_probs=258.9

Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccC-cchHhHHHHHHH
Q 013707           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG-RKAMLTLPLTLS   91 (438)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~G-rk~~l~~~~~~~   91 (438)
                      +....++..+..+...|.+|.+.+        +.+.+..++|.+.+...+..+++++++|.++||++ +||.+.+..++.
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~--------~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~   78 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLE--------SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLS   78 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHH
Confidence            455567777888999999999987        44677899999999999999999999999999986 577887777777


Q ss_pred             HHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhh-----hHH
Q 013707           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA-----ARF  166 (438)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l-----~~~  166 (438)
                      ++........++   ++.++..-++..+ ......|...++..+...  ++++-.|......++|.+++...     .+.
T Consensus        79 ~~~~~~~~~~~~---f~~~~~~~~l~~~-~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~  152 (400)
T PF03825_consen   79 ALALLLLAFSSS---FWWLFVIMLLFSF-FFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGY  152 (400)
T ss_pred             HHHHHHHHHhcc---HHHHHHHHHHHHH-HHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhh
Confidence            777767777777   7777777777777 566777888888888775  34455666777777777766432     222


Q ss_pred             hhH---HHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhc
Q 013707          167 LST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR  243 (438)
Q Consensus       167 ~~w---~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (438)
                      .++   ...+++.+...++.. ...+.+|+.|++++.++                          ..++...++..+ +.
T Consensus       153 ~~~~~~~~~~~i~~~~~~ll~-~~~l~lp~~~~~~~~~~--------------------------~~~~~~~~~~~~-ll  204 (400)
T PF03825_consen  153 LGISGTSLIFYIAAILSLLLA-GFALFLPKTPPKRSAKE--------------------------SVKKLLGLDALK-LL  204 (400)
T ss_pred             hccccccHHHHHHHHHHHHHH-HHHHhCCCCccccccCC--------------------------CcccccchHHHH-Hh
Confidence            222   245565555443332 23355777763322210                          001112233333 45


Q ss_pred             ccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 013707          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (438)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (438)
                      |+|.+...++..++.+......+++.+.|+++.-|.+....+...+...+..++.- ...+++.+|+|.++++.++....
T Consensus       205 k~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f-~~~~~~~~r~g~~~ll~~a~~~~  283 (400)
T PF03825_consen  205 KNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFF-FFSGRFLKRFGIKWLLLLALVAY  283 (400)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHH
Confidence            56778888888888888999999999999999533777888887777777776765 78899999999999999999999


Q ss_pred             HHHHHHhHhc-ccchHHHH-H----HHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhH-hhhhhhhhhHhHHHHHH
Q 013707          324 CINMFICSIS-WSAWVPYA-T----TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGI-SSFANIVSPLIFSPLTA  396 (438)
Q Consensus       324 ~~~~~~~~~~-~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~~g~~~~g~l~~  396 (438)
                      ++-..+++.. ++.+..+. .    .+.|...+........++.+.+|++.|++++++++.. ..+|..+|..++|+++|
T Consensus       284 ~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~  363 (400)
T PF03825_consen  284 AVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYD  363 (400)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            9999999887 44443333 2    3578999999999999999999999999999998876 58999999999999999


Q ss_pred             HHh
Q 013707          397 LFL  399 (438)
Q Consensus       397 ~~~  399 (438)
                      +++
T Consensus       364 ~~g  366 (400)
T PF03825_consen  364 AFG  366 (400)
T ss_pred             Hhc
Confidence            864

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.95  E-value=2e-25  Score=215.82  Aligned_cols=363  Identities=17%  Similarity=0.137  Sum_probs=250.7

Q ss_pred             hhhhhhhhHHHHHHhhCCCCccchhhH--HHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhc
Q 013707           24 TMMVVPAITDVTMMALCPGLDECSLAI--YLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR  101 (438)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~  101 (438)
                      .+...+..+.+..+..   ..+...+.  .+.+++.+...++..+++++.|+++|++|||+.++++.+.+.++.++++++
T Consensus        63 ~g~~s~~~~~~~~~~~---~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a  139 (513)
T KOG0254|consen   63 IGGISGALDFLQRFAS---LYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA  139 (513)
T ss_pred             cccchhhHHHHHhccc---ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            3556666666655321   11112211  456999999999999999999999999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh-----hHHHHHHHH
Q 013707          102 RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAA  176 (438)
Q Consensus       102 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-----~w~~~f~~~  176 (438)
                      +|   +++++++|++.|+ |.|........+++|..|++.||...+..+....+|..+|..++...     +||..+.+.
T Consensus       140 ~~---~~~l~~GR~l~G~-g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~  215 (513)
T KOG0254|consen  140 PS---WYQLIVGRILTGL-GVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLA  215 (513)
T ss_pred             hh---HHHHHHHHHHhcc-chhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHH
Confidence            99   9999999999999 88999999999999999999999999999999999999997777665     699999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCCCCCccc---chhccccc-cCCCCCCC------CCccccccCC-chhHHHHhhccc
Q 013707          177 TIVSMLAAAYMRVFLKDDVPNDDDDDLTRPI---ITEETEGV-NQNESNSP------VKIPVCKKIP-SIRDLICLLRSS  245 (438)
Q Consensus       177 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~  245 (438)
                      .+.+++..+. .+++||+|+...++.+.+++   ........ ++.+.+..      ..+....+.+ .+++.++...++
T Consensus       216 ~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  294 (513)
T KOG0254|consen  216 LIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRK  294 (513)
T ss_pred             HHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHH
Confidence            8888777666 88999999865443332222   22222211 00000000      0000000111 233322211223


Q ss_pred             chhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 013707          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (438)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (438)
                      +......+..+....+......+.+.+++. .|.+... .......++...++. .+...+.||+|||+.++.+...+.+
T Consensus       295 ~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~-~g~~~~~-~~~~~~~~~v~~~~t-~~~~~lvd~~gRr~lll~s~~~m~~  371 (513)
T KOG0254|consen  295 RLIIGLLLQLFQQLTGINYVFYYSTTIFKS-AGLKSDT-FLASIILGVVNFLGT-LVATYLVDRFGRRKLLLFGAAGMSI  371 (513)
T ss_pred             HHHHHHHHHHHHHHhCCceEEeehHHHHHh-cCCCCch-HHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHhHHHHHH
Confidence            334444555555555556667777777766 4666443 334445556666666 5667999999999999999999999


Q ss_pred             HHHHhHhcc----c--------chHHHH--HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhH
Q 013707          326 NMFICSISW----S--------AWVPYA--TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIF  391 (438)
Q Consensus       326 ~~~~~~~~~----~--------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~  391 (438)
                      +.++++...    .        .+..+.  +...........|..+.+.+|.+|.+.|+++.++....+.+.+.+-....
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~  451 (513)
T KOG0254|consen  372 CLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFF  451 (513)
T ss_pred             HHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            988877532    1        111222  22223334444566777889999999999999999999987777665554


Q ss_pred             HHHHHH
Q 013707          392 SPLTAL  397 (438)
Q Consensus       392 g~l~~~  397 (438)
                      ....+.
T Consensus       452 ~~~~~~  457 (513)
T KOG0254|consen  452 PFITEA  457 (513)
T ss_pred             HHHHHh
Confidence            444443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.95  E-value=2.5e-25  Score=210.50  Aligned_cols=367  Identities=15%  Similarity=0.136  Sum_probs=276.7

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHH-Hhhhhcchh
Q 013707           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALR-TLTAMVCEG  123 (438)
Q Consensus        45 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r-~l~G~~~~~  123 (438)
                      +++.+..+.+|+.++..-...+.+|+.+.+.||+|.|++.+.+.++.+++.++..++++   +|.+++.. ++.|+ |.+
T Consensus        75 ~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~---i~~l~lt~gvi~G~-G~~  150 (509)
T KOG2504|consen   75 YFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATS---LWQLYLTFGVIGGL-GLG  150 (509)
T ss_pred             HhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhc-cch
Confidence            44445566899999999999999999999999999999999999999999999999999   76655554 66788 888


Q ss_pred             hHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 013707          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDD  199 (438)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~  199 (438)
                      .........+..+++ ++|+.+.|+...+.++|..+-|.+..+    +|||+.+++.+.+.+-..+.....-|.+++..+
T Consensus       151 ~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~  229 (509)
T KOG2504|consen  151 LIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKP  229 (509)
T ss_pred             hhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCc
Confidence            888888888887775 889999999999999999888877766    499999999988876555555555553333211


Q ss_pred             CC-CCCcc---cchhc----------cccccCC----CCCCCCCccccccCCchhHHH----HhhcccchhHHHHHHHHH
Q 013707          200 DD-DLTRP---IITEE----------TEGVNQN----ESNSPVKIPVCKKIPSIRDLI----CLLRSSVTLSQAAVVAFF  257 (438)
Q Consensus       200 ~~-~~~~~---~~~~~----------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  257 (438)
                      .+ +|.+.   ..+..          ......+    ..+...+.+.+....+.+...    ..+.+++.++...+...+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~  309 (509)
T KOG2504|consen  230 NEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLF  309 (509)
T ss_pred             hhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHH
Confidence            10 00000   00000          0000000    000000000000100111111    235567889988899999


Q ss_pred             HHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhhHHHHHHHHHHHHHHHhHhccc
Q 013707          258 SGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG--EAKLLSLGLFAACINMFICSISWS  335 (438)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  335 (438)
                      ...++.....++|.|.++ .|++..+.+.+.+..++..+++. ++.|++.|+..  ++.+..++.+..+++.+..++.++
T Consensus       310 ~~~g~~~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gR-i~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~  387 (509)
T KOG2504|consen  310 AYLGFNVPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGR-IILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATT  387 (509)
T ss_pred             HHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhh-hhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999996 79999999999999999999999 88899999877  455667777778888878888888


Q ss_pred             chHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCCCCCchHHHH
Q 013707          336 AWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMC  414 (438)
Q Consensus       336 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~  414 (438)
                      .+.+.. ..++|+..+.........+.|.++.++-..+.|+....+.++..+||++.|.+.|..++++..++..+...+.
T Consensus       388 ~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~  467 (509)
T KOG2504|consen  388 YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLL  467 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHH
Confidence            877766 6888999998888888899999999999999999999999999999999999999987777666665655554


Q ss_pred             HHHH
Q 013707          415 IGLA  418 (438)
Q Consensus       415 ~~~~  418 (438)
                      .+.+
T Consensus       468 s~~~  471 (509)
T KOG2504|consen  468 SAVL  471 (509)
T ss_pred             HHHH
Confidence            4433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.95  E-value=5.6e-24  Score=184.04  Aligned_cols=340  Identities=16%  Similarity=0.148  Sum_probs=269.4

Q ss_pred             HHHHHHHHHHhhh----hhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHH
Q 013707           12 HLFVTVFLWGFAT----MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (438)
Q Consensus        12 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (438)
                      .+..+..+..+..    ..+.|.++.+        .+|.+.|....|++.++..+...+.+++..+++.|+|.++.+..+
T Consensus        12 ~li~gIvlia~NLR~~itsvgPLL~~I--------r~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~   83 (395)
T COG2807          12 LLLAGIVLIAFNLRPAITSVGPLLDEI--------RQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLA   83 (395)
T ss_pred             HHHHHHHHHHhccchhhhhhhhhHHHH--------HHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHH
Confidence            3344444444443    4556666666        447788889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhh----
Q 013707           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA----  163 (438)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l----  163 (438)
                      +++.+++.++-... +   .+.++.+-.+.|. +.+..+...++.+-+.+| |+-+..+|++.+..++|..+++.+    
T Consensus        84 Llli~~G~~iR~~~-~---~~~L~~gt~l~G~-gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpl  157 (395)
T COG2807          84 LLLIAAGILIRSLG-G---LPLLFLGTLLAGA-GIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPL  157 (395)
T ss_pred             HHHHHHHHHHHhcc-c---HHHHHHHHHHHHh-hHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHH
Confidence            99999999988877 4   6888999999999 899999999999999998 667899999999998887776544    


Q ss_pred             hHHh-hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhh
Q 013707          164 ARFL-STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (438)
Q Consensus       164 ~~~~-~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (438)
                      .... +||.....-+.+++++.+..   +|...+++..+                          ...+..+..    .+
T Consensus       158 a~~~~gW~~aL~~WAl~allAl~~W---lPq~~r~~~~~--------------------------~~~~~~~~~----~v  204 (395)
T COG2807         158 AQHSGGWRGALGFWALLALLALLIW---LPQALREQAAS--------------------------IATKLVSVR----KV  204 (395)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHH---hhhcccccccc--------------------------ccccccccc----cc
Confidence            4444 79999888888877665443   33322111110                          000001111    26


Q ss_pred             cccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHH
Q 013707          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG-EAKLLSLGLF  321 (438)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~  321 (438)
                      +++|.-|.+.+..-+.++.++....|+|.++.|+ |+|+.+.|.+.+...+..+..+ +..+.+.+|.+ +|+.......
T Consensus       205 w~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~-G~sa~~aG~llsl~~l~~~~~~-ll~P~la~R~~n~r~~~~~~~~  282 (395)
T COG2807         205 WRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR-GLSAAEAGSLLSLMQLAQLPTA-LLIPLLARRSKNQRPLVVLALL  282 (395)
T ss_pred             ccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc-CCCHHHhhhHHHHHHHHHHHHH-HHHHHHHHHhcccchHHHHHHH
Confidence            6789899999999999999999999999999994 9999999999999999999999 88899999764 4667777777


Q ss_pred             HHHHHHHHhHhcccchHHHHHHHHHhhhhhhHHHHHHHHhhcCCC-CcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhc
Q 013707          322 AACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGP-NEQGKAQGCISGISSFANIVSPLIFSPLTALFLS  400 (438)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~  400 (438)
                      ++.+++..+.+.+......-.+++|++.+..+|.....+.+..++ ++.++-.|+.+..+++-.+.||.+.|++.|..++
T Consensus       283 ~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gs  362 (395)
T COG2807         283 LMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGS  362 (395)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCC
Confidence            888888888776654433336889999999999988888766544 5567888899999999999999999999998665

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.95  E-value=4.1e-25  Score=214.89  Aligned_cols=339  Identities=18%  Similarity=0.125  Sum_probs=241.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHh
Q 013707           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSIN  126 (438)
Q Consensus        47 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~  126 (438)
                      ..+.....+.++++.+|.++|++++|.++||+|||+++++++++..++.+..++++|   ++.+++.|++.|+ +.+...
T Consensus       114 c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~---~~~~~~~Rfl~G~-~~~~~~  189 (521)
T KOG0255|consen  114 CDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN---YWMFLIFRFLSGF-FGSGPL  189 (521)
T ss_pred             eCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hccchh
Confidence            345577889999999999999999999999999999999999999999999999999   9999999999999 778888


Q ss_pred             hhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh--hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCC
Q 013707          127 CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLT  204 (438)
Q Consensus       127 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~--~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  204 (438)
                      .+...++.|+.++++|+.+..+ ......+..+++..++++  +||+.+++..++.++..++ ++..||+++....+.+.
T Consensus       190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~  267 (521)
T KOG0255|consen  190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGRI  267 (521)
T ss_pred             HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCch
Confidence            8999999999999999999999 666666777777777665  8999999999988766554 66677999876555554


Q ss_pred             cccchhccccccC---CCCCCC---C---CccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHh
Q 013707          205 RPIITEETEGVNQ---NESNSP---V---KIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKA  275 (438)
Q Consensus       205 ~~~~~~~~~~~~~---~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (438)
                      ++..+..++..+.   +.+...   .   .+.........+.....+.+.+.++...+...+..+.......-++.....
T Consensus       268 ~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~  347 (521)
T KOG0255|consen  268 DEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSG  347 (521)
T ss_pred             HHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhh
Confidence            4444333221111   000000   0   000000000000112224445545555555555544444444444444433


Q ss_pred             HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchH---HHH-HHHHHhhhhh
Q 013707          276 QFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWV---PYA-TTAFSVLVVF  351 (438)
Q Consensus       276 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~  351 (438)
                       +|.+...   .....+....... ...+...|+.|||.....+..+..++++...+......   ... ..+..++.+.
T Consensus       348 -lg~~~~~---~~~~~~~~~~p~~-~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (521)
T KOG0255|consen  348 -LGGNIYL---NFTLSGLVELPAY-FRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGS  422 (521)
T ss_pred             -cCchHHH---HHHHHHHHHhhHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Confidence             4555433   2333333444444 56678899999999999999999999999888765432   333 3445566666


Q ss_pred             hHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          352 ATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      .....+.+..|..|+..|+.+.+..+....++.+++|.+.-....
T Consensus       423 ~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  423 AFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            777779999999999999999999999999999999987754433

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.94  E-value=1.1e-23  Score=190.82  Aligned_cols=384  Identities=14%  Similarity=0.093  Sum_probs=262.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhH
Q 013707            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (438)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~   85 (438)
                      ++++.+.+....+...+..+...|..|..+++       +.+++..++|.+.++..+..++.+|+.|.++||.|.||-++
T Consensus         5 ~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~-------~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll   77 (412)
T PF01306_consen    5 KNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQ-------VAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLL   77 (412)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------ccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHH
Confidence            35567777778888889999999999999874       35788899999999999999999999999999999766655


Q ss_pred             HHHHHHH---HHHHHHHhccc--chhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhh
Q 013707           86 LPLTLSI---IPLAILAYRRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG  160 (438)
Q Consensus        86 ~~~~~~~---~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  160 (438)
                      .......   ...+...+.|-  .+.+...+++-...|+ .-....|+..+++.+..  ++.+.-.|-.....++|.+++
T Consensus        78 ~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~-~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~  154 (412)
T PF01306_consen   78 WFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGL-VFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIA  154 (412)
T ss_dssp             HHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTT-TTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHH
Confidence            4433221   22222233221  1112233444444565 44555677888877765  345566788888889999999


Q ss_pred             HhhhHHh---hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhH
Q 013707          161 TLAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (438)
Q Consensus       161 ~~l~~~~---~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (438)
                      ..++|.+   +.+..||+....+++..++....-|+.+++.+.. |                     .+..++++.+.++
T Consensus       155 s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~-~---------------------~~~~~~~~~~~~~  212 (412)
T PF01306_consen  155 SLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVA-D---------------------ALGAKKDKVSLKD  212 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SS-T---------------------TSSS------HHH
T ss_pred             HHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh-c---------------------ccccCCCCCcHHH
Confidence            9888875   5577888776665554444333333333222111 0                     0011112224555


Q ss_pred             HHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHc---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 013707          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF---HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (438)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  314 (438)
                      ..+ +.|+|++|.+.+........+..+....+.|.++.+   +.+....|++.+...+..++.. .+.+++.+|+|.|+
T Consensus       213 ~~~-l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m-~~~p~li~rig~k~  290 (412)
T PF01306_consen  213 VLS-LFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMM-FFSPWLINRIGAKN  290 (412)
T ss_dssp             HHH-HTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHH
T ss_pred             HHH-HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHH-HHHHHHHHhcChHh
Confidence            444 456788888888777777777777777888887643   2344557888888777777776 88899999999999


Q ss_pred             HHHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHH-hhHhhhhhhhhhHhHH
Q 013707          315 LLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCI-SGISSFANIVSPLIFS  392 (438)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~~g~~~~g  392 (438)
                      .++++..++.+-....++.++.+.+.. -.+.++-.........-++++.+|++..++.+.+. +...+++..+.+.+.|
T Consensus       291 ~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G  370 (412)
T PF01306_consen  291 LLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAG  370 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            999999999999999999999887776 58889999999999999999999999999999885 6888999999999999


Q ss_pred             HHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhh
Q 013707          393 PLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSF  431 (438)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (438)
                      .++|+.+        ..-.+.+.+.+.+...++..+..+
T Consensus       371 ~lyd~~G--------~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  371 YLYDRIG--------FQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             hhHhhcC--------cHHHHHHHHHHHHHHHHHheeeec
Confidence            9999864        122344444445544444444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.94  E-value=3.1e-23  Score=195.34  Aligned_cols=353  Identities=14%  Similarity=0.136  Sum_probs=263.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhH-HHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhh
Q 013707           50 IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT-LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCL  128 (438)
Q Consensus        50 ~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~  128 (438)
                      ....++..++..+...+..|+.|.++|+-|+||.++ ....+..+++..+.+.+. +.++...+.-++.-+ +.+.....
T Consensus        69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~-~~~~~~~~l~iia~v-~~~~~~vf  146 (477)
T PF11700_consen   69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSP-GQWWLALVLFIIANV-GYEASNVF  146 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHH-HHHHHHHH
Confidence            355678899999999999999999999998766655 455566667777776522 224444444455445 66677778


Q ss_pred             hhHhhhccCCccch--------------------------hHHHHHHHHHHHhhhhhhHhhhHH------------hhHH
Q 013707          129 ALAYVADNISERQR--------------------------ASAFGILLGVLSASFVCGTLAARF------------LSTT  170 (438)
Q Consensus       129 ~~~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~l~~~------------~~w~  170 (438)
                      .++++.|..+++++                          ++..+.-.+...+|.++.-.+.-.            .+-|
T Consensus       147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r  226 (477)
T PF11700_consen  147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR  226 (477)
T ss_pred             HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence            99999999998888                          888887777777777665444322            1247


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHH
Q 013707          171 SAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQ  250 (438)
Q Consensus       171 ~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (438)
                      ..+.+.++..++..+...+.+||.|+++..+..                     .+.........++.++..+|.|.+..
T Consensus       227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~---------------------~~~~~~g~~~l~~t~k~~~~~~~~~~  285 (477)
T PF11700_consen  227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSG---------------------SSYLRFGFKRLWRTFKEIRKLRQLFL  285 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcc---------------------hhHHHHHHHHHHHHHHHHHhChHHHH
Confidence            888888888777778888888888763222100                     00001111233444566778889999


Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh--hHHHHHHHHHHHHHH
Q 013707          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEA--KLLSLGLFAACINMF  328 (438)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~  328 (438)
                      .++..+++.-+...+......|.++++|++..+...+.....+.++++. ++.+++.||+|.|  +++..+.....+..+
T Consensus       286 fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga-~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~  364 (477)
T PF11700_consen  286 FLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGA-LLFGWLQDRFGPKTKRTLLISLILWIIIPL  364 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999 8888999999998  777777666644333


Q ss_pred             HhHh--------cccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHh
Q 013707          329 ICSI--------SWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFL  399 (438)
Q Consensus       329 ~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  399 (438)
                      .-.+        .++.+.+++ ..+.|+..+..++...++.+++.|+++.++.+|++.........+||.+.|.+.+.++
T Consensus       365 ~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg  444 (477)
T PF11700_consen  365 YGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG  444 (477)
T ss_pred             HHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3333        445666666 6788999999999999999999999999999999999999999999999999999875


Q ss_pred             cCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhh
Q 013707          400 SKGAPFNFPGFSIMCIGLASVRAFTYELLLSFYV  433 (438)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (438)
                      +..       ..+....++.++++++....+.++
T Consensus       445 ~~r-------~g~~~l~~lf~~gl~ll~~v~~~~  471 (477)
T PF11700_consen  445 SQR-------YGFLFLLVLFLIGLILLFFVDVEK  471 (477)
T ss_pred             Cch-------hHHHHHHHHHHHHHHHHhhccchh
Confidence            432       233444455666666665555444

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.94  E-value=9.2e-31  Score=250.55  Aligned_cols=403  Identities=16%  Similarity=0.176  Sum_probs=257.7

Q ss_pred             HHHHHHHhhhhhhhhhhHHHHHHhh---CCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHH
Q 013707           15 VTVFLWGFATMMVVPAITDVTMMAL---CPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (438)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~   91 (438)
                      ++.+...++.+...+..+.......   ....++.+.+..+.++..+...++..+++++.|.++||+|||+.+..+.++.
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~   86 (451)
T PF00083_consen    7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM   86 (451)
T ss_pred             HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence            3446677777666655555442211   1111222224567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc---cchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh-
Q 013707           92 IIPLAILAYRR---SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (438)
Q Consensus        92 ~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-  167 (438)
                      .++.++.++++   +   ++.+.++|+++|+ +.|...+....++.|..|+++|++..++.+....+|..++..++... 
T Consensus        87 ~i~~~~~~~~~~~~~---~~~~~~~R~~~G~-~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~  162 (451)
T PF00083_consen   87 IIGSILIAFAPSYNN---FWMLLIGRFLIGF-GIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVS  162 (451)
T ss_pred             ccccccccccccccc---ccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999   7   8999999999999 88999999999999999999999999999999999988887665432 


Q ss_pred             ---h---HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC---CCcccchhccccccCCCCCCCC-Cc--cccccCCch
Q 013707          168 ---S---TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDD---LTRPIITEETEGVNQNESNSPV-KI--PVCKKIPSI  235 (438)
Q Consensus       168 ---~---w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~  235 (438)
                         +   ||..+.+..+++++. ++...++||+|+....++   ++++..++.+.++..+++.++. ++  ...+.+..+
T Consensus       163 ~~~~~~~Wr~~~~~~~~~~l~~-~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (451)
T PF00083_consen  163 YYSDNWGWRILLIFGAIPSLLV-LLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASW  241 (451)
T ss_pred             cccccccccccccccccccccc-cccccccccccceecccccccccccccccccccccccccccccccccccccccceee
Confidence               4   999999988887654 445578999998654443   3333333322121111111111 11  111111233


Q ss_pred             hHHHHhhcccchhHHHHHHHHHHHhhh-chhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 013707          236 RDLICLLRSSVTLSQAAVVAFFSGLSE-GGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (438)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  314 (438)
                      ++.++....++.............+.. .....+.+...++ .+.++..  .......+...++. +....+.||+|||+
T Consensus       242 ~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~GRr~  317 (451)
T PF00083_consen  242 RDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNSF--LATLILGLVNFLGT-LLAIFLIDRFGRRK  317 (451)
T ss_pred             eeccccccccccccccccccccccccccccccccccccccc-ccccccc--cccccccccccccc-cccccccccccccc
Confidence            332221111112222222222222222 2333444444443 5666651  12223334444444 55568999999999


Q ss_pred             HHHHHHHHHHHHHHHhH--h---ccc----chHHHH-HHHHHhhhh-hhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhh
Q 013707          315 LLSLGLFAACINMFICS--I---SWS----AWVPYA-TTAFSVLVV-FATPSFRSIVSKQVGPNEQGKAQGCISGISSFA  383 (438)
Q Consensus       315 ~~~~~~~~~~~~~~~~~--~---~~~----~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  383 (438)
                      ++..+....+++.+.+.  .   ..+    ....+. ..+.....+ ...+..+.+..|.+|.+.|+++.|+....+.++
T Consensus       318 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~  397 (451)
T PF00083_consen  318 LLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIG  397 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccc
Confidence            99999888887777664  1   111    111122 222222222 445677788899999999999999999999999


Q ss_pred             hhhhhHhHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhc
Q 013707          384 NIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSFYVF  434 (438)
Q Consensus       384 ~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (438)
                      +.++|.+...+.+...        ....+.+.+.++++..+..+...|+.+
T Consensus       398 ~~i~~~~~~~~~~~~~--------~~~~~~i~~~~~~i~~i~~~~~lpET~  440 (451)
T PF00083_consen  398 GFIIPFLFPYLFNNLG--------GWGVFLIFAGVCLIAIIFVYFFLPETK  440 (451)
T ss_pred             cccccccccccccccc--------ccccchhhHHHHHHHHhheeEEEeeCC
Confidence            9999999888776532        122233344444545555444444433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.7e-26  Score=204.66  Aligned_cols=415  Identities=13%  Similarity=0.098  Sum_probs=279.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHH
Q 013707           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (438)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~   89 (438)
                      +.+.-.+.+.+..+...+.++.|.+.+...+...+.-+.+....+.+..+..+|.++++++.|+++||+|||+++...++
T Consensus        43 i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~li  122 (538)
T KOG0252|consen   43 IIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELI  122 (538)
T ss_pred             HHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHH
Confidence            33334556677777777777777666554333333344566777899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccc----hhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhH
Q 013707           90 LSIIPLAILAYRRSI----SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (438)
Q Consensus        90 ~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~  165 (438)
                      +..+++++++++...    ....++...|++.|+ |.|+-+|.+.+..+|...+++||...+.+-+.++.|.+.|.+++-
T Consensus       123 ImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGi-GIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~  201 (538)
T KOG0252|consen  123 IMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGI-GIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVAL  201 (538)
T ss_pred             HHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhc-cccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHH
Confidence            999999988776432    346899999999999 999999999999999999999999999998888888888776653


Q ss_pred             Hh-------------------hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC-CCCCcccchhccccccC-CCCCCCC
Q 013707          166 FL-------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD-DDLTRPIITEETEGVNQ-NESNSPV  224 (438)
Q Consensus       166 ~~-------------------~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~  224 (438)
                      .+                   -||..|.+.++++++. ++....+||+++-+.. .+|.+.+.+...+..+. -++++..
T Consensus       202 Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~-ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~  280 (538)
T KOG0252|consen  202 IVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLV-LYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTA  280 (538)
T ss_pred             HHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHH-HHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhcc
Confidence            31                   4999999988886554 5556788998764311 11111111100000000 0011111


Q ss_pred             CccccccCCchhHHHHhhccc--chhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHH--------HHHHHHHH
Q 013707          225 KIPVCKKIPSIRDLICLLRSS--VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFAD--------LMLIAGLA  294 (438)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~~~  294 (438)
                      +......++..+...+.+.++  +.+.......|+.-.+++..+.+....+++ .|+.+.+...        .......+
T Consensus       281 ~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~iia~~  359 (538)
T KOG0252|consen  281 ESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA-IGVIPSANTYHELFKVAEGNLIIAVC  359 (538)
T ss_pred             ccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh-hccCCCcchHHHHHHHHHHHHHHHHH
Confidence            111111112222233333333  455566667777778888888777777765 4665554333        12222223


Q ss_pred             HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchH----HHH--HHHHHhhhhhhHHHHHHHHhhcCCCCc
Q 013707          295 GTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWV----PYA--TTAFSVLVVFATPSFRSIVSKQVGPNE  368 (438)
Q Consensus       295 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (438)
                      +.+..+.+...++|++||+++.+.++.++.+..+.++...++..    ..+  .+...++..........+..|.+|.+.
T Consensus       360 ~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv  439 (538)
T KOG0252|consen  360 STVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV  439 (538)
T ss_pred             ccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH
Confidence            33322245556789999999999999999999998888766211    111  222233333334455566799999999


Q ss_pred             chhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 013707          369 QGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLS  430 (438)
Q Consensus       369 ~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (438)
                      ||+..|+....+..|+++|...++++.++-   ..+.......+.+.+.+++++.+..+.+.
T Consensus       440 R~t~hGIsAA~GK~GAivg~~~F~~~t~~~---yp~~~g~~~v~~i~~~~~~~gi~~T~l~p  498 (538)
T KOG0252|consen  440 RSTCHGISAASGKAGAIVGAFGFLYLTDHN---YPPNIGVRNVFIILAGCMLLGILFTLLIP  498 (538)
T ss_pred             hhhhhhHHHHhccchHHHHHHHhhHhhhcc---CCccccchHHHHHHHHHHHHhHheeEEee
Confidence            999999999999999999999999887742   12223445577777888888777666554

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.94  E-value=4.2e-24  Score=194.37  Aligned_cols=404  Identities=10%  Similarity=0.004  Sum_probs=263.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHH-HHHHHHHHHHHHHHHhhhhcccccccCcc
Q 013707            3 MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYL-SGFQQAIIGLGTLVMMPVIGNLSDQYGRK   81 (438)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk   81 (438)
                      |+.|++....+|+-.|+..+  -...|....++.       +|++++..+ .|.+.++++.+++++.++.|+++||+|.|
T Consensus        22 ~~~W~~~~~~lC~fGF~~e~--R~n~s~a~p~L~-------~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K   92 (511)
T TIGR00806        22 LKSWRVLVLYLCFYGFMAQF--RPGESFITPYLL-------TVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK   92 (511)
T ss_pred             hcchhHHHHHHHHHHHHHHh--hchHHHHHHHHH-------HHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence            45677665555554444332  222222222322       267888888 99999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhH
Q 013707           82 AMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (438)
Q Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  161 (438)
                      +++..+.+.+++.+++.+++++   +..+.+.|++.|+ +.|... +...++.+++|++||+++.++..++..+|.++++
T Consensus        93 ~vL~l~~l~Wsl~t~L~~fa~S---l~~L~i~R~llGv-aEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~  167 (511)
T TIGR00806        93 PVLVLQALSFVCVWLLLLLGTS---VWHMQLMEVFYSV-TMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSS  167 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999   9999999999999 899998 9999999999999999999999999999999999


Q ss_pred             hhhHH---hhHHHHHHHHH--HHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCc--cccccCCc
Q 013707          162 LAARF---LSTTSAFQAAT--IVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKI--PVCKKIPS  234 (438)
Q Consensus       162 ~l~~~---~~w~~~f~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  234 (438)
                      ++++.   +|||+-+.++-  ..+....++..+++|..++..--+++.++..+...+.+...+++.....  .+......
T Consensus       168 ~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (511)
T TIGR00806       168 VLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSF  247 (511)
T ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHH
Confidence            88876   37876544331  2222333455567885544211110000000000000000000000000  00001111


Q ss_pred             hhHHH---HhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013707          235 IRDLI---CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG  311 (438)
Q Consensus       235 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  311 (438)
                      .+..+   +...+|+.+....+=..+...++..+.++.....++..+-.+...|..-++..+.+.+.. +..|.+-.+..
T Consensus       248 ~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a-~~ag~~~~~w~  326 (511)
T TIGR00806       248 LVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITS-FIAGFVNIRWA  326 (511)
T ss_pred             HHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHH-HHHHhhcCCch
Confidence            22222   223456766666666666666777777776666655433222355777788888888877 77777755554


Q ss_pred             hh--hHHHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhh
Q 013707          312 EA--KLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSP  388 (438)
Q Consensus       312 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~  388 (438)
                      +.  ..+.+..++.+..++++.+.++.|..+. -+++........+.....+.+....|.-|-++|+++.+..+-+.+-.
T Consensus       327 ~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT  406 (511)
T TIGR00806       327 RWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIIT  406 (511)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheE
Confidence            32  3445555666777788888999999988 46778888888888888888888888889999998887765555444


Q ss_pred             HhHHHHHHHH-h--cCCCCCCCCchHHHHHHHHHHHHHH
Q 013707          389 LIFSPLTALF-L--SKGAPFNFPGFSIMCIGLASVRAFT  424 (438)
Q Consensus       389 ~~~g~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~  424 (438)
                      .+.   .|.. .  +....+...+..|.+.+++.++...
T Consensus       407 ~iV---vd~~gl~l~i~~Qf~vY~~yf~~~~~i~~~~~~  442 (511)
T TIGR00806       407 AVV---SDKRGLGLQVRKQFRIYSVYFLVLSIICFFGAG  442 (511)
T ss_pred             EEE---EcccccCCCceeEEEehhhHHHHHHHHHHHHHH
Confidence            322   2321 1  1122333444455555555555444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.94  E-value=3.4e-23  Score=198.53  Aligned_cols=350  Identities=11%  Similarity=0.047  Sum_probs=245.0

Q ss_pred             HHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhccccc----ccCcch-HhHHHHH
Q 013707           15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRKA-MLTLPLT   89 (438)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D----r~Grk~-~l~~~~~   89 (438)
                      ++.+...+..++..+.++.|..+       ..++++..+|.+..+..+...+..|+.|.++|    |+|||| .++.+..
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~-------v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i   85 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTD-------VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTL   85 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhH
Confidence            45555666677777777777654       45788899999999999999999999999999    569954 5556777


Q ss_pred             HHHHHHHHHHhcccch---hHHHHHHHHHhhhhcchhhHhhhhhHhhhccC-CccchhHHHHHHHHHHHhhhhhhHhhhH
Q 013707           90 LSIIPLAILAYRRSIS---FFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAAR  165 (438)
Q Consensus        90 ~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l~~  165 (438)
                      ..+++..++...++.+   .+..+++...+.++ +.....+...++..|.. +++||.+..++.....++|..+++.+..
T Consensus        86 ~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~-~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~  164 (473)
T PRK10429         86 ANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGM-TYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTL  164 (473)
T ss_pred             HHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHH-HHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777766665444211   23455566666677 66777778899999999 5899999999877766766555433322


Q ss_pred             H-----------hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCc
Q 013707          166 F-----------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPS  234 (438)
Q Consensus       166 ~-----------~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (438)
                      .           .+|+....+.+++..+..+...+..||.+++++.+                         .+.+++.+
T Consensus       165 ~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~-------------------------~~~~~~~~  219 (473)
T PRK10429        165 PFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQV-------------------------SAEGSHLT  219 (473)
T ss_pred             HHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccc-------------------------cccccCCC
Confidence            1           24566666666665555555555566653221110                         00011235


Q ss_pred             hhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 013707          235 IRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (438)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  314 (438)
                      .++.++.+++||.++..+...++..........+.+.|.+...+ ++...+.+.....+..+++. ++.+++.||+|+|+
T Consensus       220 ~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~gkk~  297 (473)
T PRK10429        220 LKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTL-ILFPRLVKSLSRRI  297 (473)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCcHH
Confidence            67777777788888888888887777777666776666665433 55566777776667778877 77889999999999


Q ss_pred             HHHHHHHHHHHHHHHhHh-----cccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCC-------CCcchhHHHHHhhHhh
Q 013707          315 LLSLGLFAACINMFICSI-----SWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVG-------PNEQGKAQGCISGISS  381 (438)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~  381 (438)
                      .+..+..+..++.+.+..     ..+.+..++ ..+.+++.+...+...++++|..|       .+..|..+|..+....
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K  377 (473)
T PRK10429        298 LWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVK  377 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHH
Confidence            988887766655544432     122333333 466778888888888899998866       3334669999999999


Q ss_pred             hhhhhhhHhHHHHHHHHh
Q 013707          382 FANIVSPLIFSPLTALFL  399 (438)
Q Consensus       382 ~g~~~g~~~~g~l~~~~~  399 (438)
                      ++..+++.+.|.+.+..+
T Consensus       378 ~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        378 GGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             HHHHHHHHHHHHHHHHcC
Confidence            999999999999998754

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.94  E-value=2e-23  Score=200.47  Aligned_cols=372  Identities=11%  Similarity=0.038  Sum_probs=229.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccc-cCcchHhH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLT   85 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grk~~l~   85 (438)
                      +|.++.++...+...++.....+.++.|.++       +++.+..+.+++.+.+........++.|+++|| +|||+.+.
T Consensus        20 p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~-------~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~   92 (500)
T PRK09584         20 PKAFYLIFSIELWERFGYYGLQGIMAVYLVK-------QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIM   92 (500)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            3467778888888888888888888888864       445555666777777666666666789999999 59999999


Q ss_pred             HHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccc--hhHHHHHHHHHHHhhhhhhHhh
Q 013707           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ--RASAFGILLGVLSASFVCGTLA  163 (438)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~l  163 (438)
                      .+.++.+++..+++++++.  .+.+++.|.++|+ +.|...+...+++.|++|+++  |..++++...+.++|..+||.+
T Consensus        93 ~g~~~~~ig~~l~~~~~~~--~~~l~~~~~l~gi-g~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i  169 (500)
T PRK09584         93 LGAIVLAIGYALVAWSGHD--AGIVYMGMATIAV-GNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLA  169 (500)
T ss_pred             HHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHH-hhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHH
Confidence            9999999999888887531  5567788999999 888888888999999998653  4567888899999999999998


Q ss_pred             hHHh----hHHHHHHHHHHHHHHHHH---HHHHhcccCCCCCC-CCCCCcccchhc---------cccccCCCCCCCCCc
Q 013707          164 ARFL----STTSAFQAATIVSMLAAA---YMRVFLKDDVPNDD-DDDLTRPIITEE---------TEGVNQNESNSPVKI  226 (438)
Q Consensus       164 ~~~~----~w~~~f~~~~~~~~i~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~~~~~~  226 (438)
                      ++++    |||+.|++.++...+..+   .....++|..++.+ ++.|..+.....         ......+. +.....
T Consensus       170 ~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  248 (500)
T PRK09584        170 TPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQ-EIARMA  248 (500)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcc-hHHHHH
Confidence            8874    899999988754443322   22333444322111 111111110000         00000000 000000


Q ss_pred             cccc----cCCchhHHH--HhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHh--HcCCCh------hHHHHHHHHHH
Q 013707          227 PVCK----KIPSIRDLI--CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKA--QFHFNK------NQFADLMLIAG  292 (438)
Q Consensus       227 ~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~------~~~~~~~~~~~  292 (438)
                      ....    .....++..  +...++| ....+ ..++....+.......|.++..  ..+.+.      ...+++.+...
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~  326 (500)
T PRK09584        249 LGVVALGIVVIFGKEAFAMKGAARRK-MIVAF-ILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNP  326 (500)
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHH-HHHHH-HHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhH
Confidence            0000    000000000  0011122 22222 2223333334444444444332  111111      11355566666


Q ss_pred             HHHHHHHHHHH----HHHHHhhchhhHHHHHHHHHHHHHHHhHhccc---------c-hHHHHHHHHHhhhhhhHHHHHH
Q 013707          293 LAGTISQLLFM----PLLAPILGEAKLLSLGLFAACINMFICSISWS---------A-WVPYATTAFSVLVVFATPSFRS  358 (438)
Q Consensus       293 ~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~  358 (438)
                      +..++.. ++.    +++.||.+..+.+.+|+++.+++++.+....+         . |......+.+++.....|...+
T Consensus       327 i~iil~~-p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s  405 (500)
T PRK09584        327 FWIMIGS-PILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLA  405 (500)
T ss_pred             HHHHHHH-HHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            5555555 343    44555555667788999999999888766543         2 3333368889999999999999


Q ss_pred             HHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          359 IVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       359 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      ++.+..|++.||+++|.......    +|+.+.|.+.+
T Consensus       406 ~~~~~aP~~~rg~~~g~~~l~~a----~g~~~~g~~~~  439 (500)
T PRK09584        406 MVAQLVPQRLMGFIMGSWFLTTA----GAALIAGYVAN  439 (500)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            99999999999999996655555    44445555544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.93  E-value=4.2e-25  Score=216.45  Aligned_cols=298  Identities=12%  Similarity=0.144  Sum_probs=217.9

Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHH
Q 013707           16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPL   95 (438)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~   95 (438)
                      ..+...+..+...+.++.+.+        +++++..+.|++.+.+.+++.++.++.|+++||+|||+.+.++.++.++++
T Consensus        41 ~~~~~~~~~g~~~~~l~~iek--------~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~  112 (633)
T TIGR00805        41 AQLQGLLYNGLVNSSLTTIER--------RFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS  112 (633)
T ss_pred             HHHHHHHHHHHHHhhchhhhh--------hhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence            444455555677777777744        567778889999999999999999999999999999999999999999999


Q ss_pred             HHHHhcc----------------------------c--------------------chhHHHHHHHHHhhhhcchhhHhh
Q 013707           96 AILAYRR----------------------------S--------------------ISFFYAYYALRTLTAMVCEGSINC  127 (438)
Q Consensus        96 ~~~~~~~----------------------------~--------------------~~~~~~l~~~r~l~G~~~~~~~~~  127 (438)
                      +++++.+                            +                    ...+..++++|+++|+ +.+...+
T Consensus       113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~Gi-G~~~~~~  191 (633)
T TIGR00805       113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGI-GATPIFP  191 (633)
T ss_pred             HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhc-cCCcchh
Confidence            9887763                            0                    0025678899999999 8899999


Q ss_pred             hhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh--------------------------hHHHHHHHHHHHHH
Q 013707          128 LALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--------------------------STTSAFQAATIVSM  181 (438)
Q Consensus       128 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~--------------------------~w~~~f~~~~~~~~  181 (438)
                      ...+++.|++|+++|++.+++......+|..+|+++++.+                          +|+..|++.+++.+
T Consensus       192 ~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~  271 (633)
T TIGR00805       192 LGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVAL  271 (633)
T ss_pred             cCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888752                          27778888888876


Q ss_pred             HHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhh
Q 013707          182 LAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLS  261 (438)
Q Consensus       182 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (438)
                      +..+. ++.+|++.++..++.+.+...+    +..++.++ ..+........+..+..+.+.++|.++...+..++....
T Consensus       272 l~~v~-l~~~p~~lp~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~  345 (633)
T TIGR00805       272 LTSIP-FFFFPKALPKEGKRVNVDVHET----EKLEKSED-KSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLA  345 (633)
T ss_pred             HHHHH-HHhCccccCCcccccchhhhhh----hccccccc-ccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            66544 4556665432211100000000    00000000 000000001112223344577889999999999999999


Q ss_pred             hchhhHHHHHHHHhHcCCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhc--hhhHHHHHHHHHHHHHHH
Q 013707          262 EGGMQASFLYFLKAQFHFNKNQFADLMLIAGLA-GTISQLLFMPLLAPILG--EAKLLSLGLFAACINMFI  329 (438)
Q Consensus       262 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~  329 (438)
                      ...+.+++|.|+++++|+++.+++.+.....+. .+++. ++.|+++||++  .|+.+..+.....++.+.
T Consensus       346 ~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~-~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       346 FNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGY-LIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHH-hhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998877764 45655 88899999987  466777777666666444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.93  E-value=1.1e-22  Score=192.77  Aligned_cols=362  Identities=14%  Similarity=0.079  Sum_probs=249.2

Q ss_pred             HhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHh
Q 013707           21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY  100 (438)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~  100 (438)
                      ++........++.+..|.   |.+      ....|+.+...++..+..++.|+++|.||||.+++.+.++..++.++++.
T Consensus        57 ~~~~~~~a~~l~~I~~di---G~~------~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at  127 (599)
T PF06609_consen   57 YFVLVLPASILPYINADI---GGS------DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT  127 (599)
T ss_pred             HHHHhccHHHHHHHHHhc---CCC------ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence            334444456667665543   221      23367888889999999999999999999999999999999999999999


Q ss_pred             cccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh----hHHHHHHHH
Q 013707          101 RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAA  176 (438)
Q Consensus       101 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~  176 (438)
                      ++|   ...++.+..+.|+ +.|... .....++|..|.|.|....+............||.++..+    +|||.|++.
T Consensus       128 A~~---~~~~iag~~l~Gv-gaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~  202 (599)
T PF06609_consen  128 AQN---MNTFIAGMVLYGV-GAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIF  202 (599)
T ss_pred             CCc---HHHHHHHHHHHHH-hhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHH
Confidence            999   9999999999999 766665 5677799999999998888777766655556677777654    799999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCCCCC--cccchhcc--------------------ccc-cCCCCCCCCC--------
Q 013707          177 TIVSMLAAAYMRVFLKDDVPNDDDDDLT--RPIITEET--------------------EGV-NQNESNSPVK--------  225 (438)
Q Consensus       177 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------------------~~~-~~~~~~~~~~--------  225 (438)
                      .+...+.++...++...+++++.+.++.  ++..++.+                    ... ..+++..+.-        
T Consensus       203 ~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~  282 (599)
T PF06609_consen  203 IIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFV  282 (599)
T ss_pred             HHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHH
Confidence            8887776655444333222221111111  11111110                    000 0111111110        


Q ss_pred             --------ccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChh---HHHHHHHHHHHH
Q 013707          226 --------IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKN---QFADLMLIAGLA  294 (438)
Q Consensus       226 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~  294 (438)
                              |.....++++-+ .+.++++|.+...++..++.+..++....+.|......++-|+.   +.++.....+++
T Consensus       283 ~Lv~F~~wE~~~~~~~Pl~P-~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg  361 (599)
T PF06609_consen  283 LLVAFVVWEWFGAPKDPLFP-HRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFG  361 (599)
T ss_pred             HHHHHHHhhhhccCCCCcCC-HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHH
Confidence                    111111122222 23344456677777777888888888888889888887777663   456777777888


Q ss_pred             HHHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHhHhc--ccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcch
Q 013707          295 GTISQLLFMPLLAPILGE-AKLLSLGLFAACINMFICSIS--WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQG  370 (438)
Q Consensus       295 ~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  370 (438)
                      ..++. .+.+.+.+++++ |+.++.+..++.+++-.++..  ++....+. .++.+++.+..........+-..|+++.|
T Consensus       362 ~~~g~-~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig  440 (599)
T PF06609_consen  362 SCAGA-VILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIG  440 (599)
T ss_pred             HHHHH-HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHH
Confidence            77777 667788888877 555567776666655555443  23323333 67778888888888888888889999999


Q ss_pred             hHHHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          371 KAQGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       371 ~~~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      ++.|+..+++.+|+.+|..+...++..-
T Consensus       441 ~a~gL~~s~R~~GGsIg~aIy~~I~~n~  468 (599)
T PF06609_consen  441 TATGLTGSIRSIGGSIGYAIYNAIFTNK  468 (599)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            9999999999999999999998887653

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09848 glucuronide transporter; Provisional

Probab=99.93  E-value=1.6e-22  Score=193.16  Aligned_cols=346  Identities=12%  Similarity=0.002  Sum_probs=233.4

Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhccccccc----CcchHh-HHHH
Q 013707           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY----GRKAML-TLPL   88 (438)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~----Grk~~l-~~~~   88 (438)
                      .++.+...+..++..+.++.|..+       ..+++..+.|.+.+...+...+..++.|+++||.    ||||.+ ..+.
T Consensus        14 g~g~~~~~~~~~~~~~~l~~y~~~-------~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~   86 (448)
T PRK09848         14 SLGDVANNFAFAMGALFLLSYYTD-------VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGT   86 (448)
T ss_pred             ccchHHhHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHH
Confidence            345556667777777878777654       4577788999999999999999999999999996    777765 4555


Q ss_pred             HHHHHHHHHHHhcc-cc---hhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCC-ccchhHHHHHHHHH-----HHhhhh
Q 013707           89 TLSIIPLAILAYRR-SI---SFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGV-----LSASFV  158 (438)
Q Consensus        89 ~~~~~~~~~~~~~~-~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~-----~~~g~~  158 (438)
                      +...+...+....+ ..   ......+....+.++ +.+...+...++..|..+ ++||.+..+....+     ..++..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~  165 (448)
T PRK09848         87 APLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGL-CYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFL  165 (448)
T ss_pred             HHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHH-HHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54444444332112 10   112334455566777 667777777787777775 46788876665543     234556


Q ss_pred             hhHhhhHHhh------HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccC
Q 013707          159 CGTLAARFLS------TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI  232 (438)
Q Consensus       159 ~g~~l~~~~~------w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (438)
                      ++|.++...+      |.....+.+++..+..++.....||+++++.+                               +
T Consensus       166 ~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~-------------------------------~  214 (448)
T PRK09848        166 IGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVA-------------------------------Q  214 (448)
T ss_pred             HHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCcc-------------------------------C
Confidence            6676654421      11111222233333323333344554321111                               0


Q ss_pred             CchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 013707          233 PSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE  312 (438)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  312 (438)
                      .+.++.++.+++||.++...+..++............|.|.++.+|.++...+.......++.+++. ++.+++.||+++
T Consensus       215 ~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~r~g~  293 (448)
T PRK09848        215 PSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASA-PLVPGMVARIGK  293 (448)
T ss_pred             CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCc
Confidence            1334445557788888888888888877777777778888888888877654444444345566666 778899999999


Q ss_pred             hhHHHHHHHHHHHHHHHhHhcc--cchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCC-------cchhHHHHHhhHhhh
Q 013707          313 AKLLSLGLFAACINMFICSISW--SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPN-------EQGKAQGCISGISSF  382 (438)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~  382 (438)
                      |+.+..+..+..++.+.+.+.+  +.+.... ..+.+++.+...+...+...|..|++       ++|...|+.+..+.+
T Consensus       294 ~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~kl  373 (448)
T PRK09848        294 KNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKC  373 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHH
Confidence            9999999988888877776644  2333333 56678888888899999988888754       359999999999999


Q ss_pred             hhhhhhHhHHHHHHHHh
Q 013707          383 ANIVSPLIFSPLTALFL  399 (438)
Q Consensus       383 g~~~g~~~~g~l~~~~~  399 (438)
                      |..+|+.+.|.+.+..+
T Consensus       374 g~aig~~i~g~~l~~~G  390 (448)
T PRK09848        374 GQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            99999999999998754

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.93  E-value=2.8e-23  Score=183.82  Aligned_cols=376  Identities=13%  Similarity=0.078  Sum_probs=280.6

Q ss_pred             hhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhH-HHHHHHHHHHHHHHhccc
Q 013707           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT-LPLTLSIIPLAILAYRRS  103 (438)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~-~~~~~~~~~~~~~~~~~~  103 (438)
                      -+....+|.|.++....+..+..-+....|...++..+...+.+|+.|.++|+.|+||... ....+..++.....+.++
T Consensus        32 ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~  111 (438)
T COG2270          32 IVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP  111 (438)
T ss_pred             eeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC
Confidence            4556678888888655433333444567899999999999999999999999999766655 555566667777777776


Q ss_pred             chhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhh------hH------------
Q 013707          104 ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA------AR------------  165 (438)
Q Consensus       104 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l------~~------------  165 (438)
                      .+.++..++.-.+..+ +........++++.|..++++-++..+.-.....+|..+--+.      .+            
T Consensus       112 ~s~~~~~l~~~il~~i-~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l  190 (438)
T COG2270         112 GSYLLLLLLFLILASI-GFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGL  190 (438)
T ss_pred             CchHHHHHHHHHHHHH-hcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeecc
Confidence            4446777777788888 7777788899999999998877776555444444443332111      11            


Q ss_pred             ----HhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHh
Q 013707          166 ----FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL  241 (438)
Q Consensus       166 ----~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (438)
                          -..-|..+.+.++-.++..+..++..|+.++...+.                       .+...+..+..++.++.
T Consensus       191 ~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~-----------------------~~~l~~g~k~L~~t~k~  247 (438)
T COG2270         191 PPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPP-----------------------PTALRNGFKELKSTFKE  247 (438)
T ss_pred             CccccccchhHHHHHHHHHHHHHhHHHhcccccccccccc-----------------------hHHHHHHHHHHHHHHHH
Confidence                013477777777777777677666676665422110                       00111111234445666


Q ss_pred             hcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 013707          242 LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLF  321 (438)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  321 (438)
                      .++++++...++..+++.-+..+.......|....+|++..+...+.....+.++++. ++.|++.||+|.|+++..+.+
T Consensus       248 i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~-ii~g~Ld~rfg~k~vl~~~lv  326 (438)
T COG2270         248 IRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGA-IIAGFLDERFGSKPVLMIGLV  326 (438)
T ss_pred             HhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCceeehHHHH
Confidence            8888999999999999999999999999999998899999999999999999999999 888999999999999999998


Q ss_pred             HHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhc
Q 013707          322 AACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLS  400 (438)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~  400 (438)
                      +..+..+...+.......+. ..+.|...+..+....++..+.+|+++.++.+|+++..+..+..+||.+.+.+.+.+++
T Consensus       327 i~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~  406 (438)
T COG2270         327 ILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS  406 (438)
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence            88887777766666555555 58889999999999999999999999999999999999999999999999999998664


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 013707          401 KGAPFNFPGFSIMCIGLASVRAFTYELLLSFY  432 (438)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (438)
                      ..       ..+....++.++++....+.+.+
T Consensus       407 ~r-------~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         407 SR-------AGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             hh-------hHHHHHHHHHHhhHhhEEeecCC
Confidence            32       22233445555555555554443

>PRK09669 putative symporter YagG; Provisional

Probab=99.93  E-value=2.2e-22  Score=191.77  Aligned_cols=336  Identities=13%  Similarity=0.056  Sum_probs=228.2

Q ss_pred             hhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccc----cCcchH-hHHHHHHHHHHHHHH
Q 013707           24 TMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAM-LTLPLTLSIIPLAIL   98 (438)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grk~~-l~~~~~~~~~~~~~~   98 (438)
                      .......++.|..       ++.++++.+.|.+.++..+...+..|+.|.++||    +||||. ++.+.+..+++..+.
T Consensus        25 ~~~~~~~l~~~~t-------~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~   97 (444)
T PRK09669         25 WQTVMLFLAYFYT-------DVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLT   97 (444)
T ss_pred             HHHHHHHHHHHHH-------HhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHH
Confidence            3444455555544       3678889999999999999999999999999998    788555 446667777776665


Q ss_pred             Hhcccc---hhHHHHHHHHHhhhhcchhhHhhhhhHhhhccC-CccchhHHHHHHHHHHHhhhhhhHhhh----HH----
Q 013707           99 AYRRSI---SFFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAA----RF----  166 (438)
Q Consensus        99 ~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~l~----~~----  166 (438)
                      ...|+.   ..+..+++...+.+. +.........++.+|+. +++||++..++......+|..+++.+.    ..    
T Consensus        98 f~~p~~~~~~~~~~~~~~~~l~~~-~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~  176 (444)
T PRK09669         98 FYTPDFGATGKIIYACVTYILLSL-VYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKG  176 (444)
T ss_pred             HhCCCCCcchHHHHHHHHHHHHHH-HHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            555542   124555666666676 55566667789999998 468899988888888778777665432    22    


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhc
Q 013707          167 ---LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR  243 (438)
Q Consensus       167 ---~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (438)
                         .+|+..+.+.+++..+..+..++..+|.++++++                              ++.+.++..+..+
T Consensus       177 ~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~------------------------------~~~~~~~~~~~~~  226 (444)
T PRK09669        177 DEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVD------------------------------NSSSVWKDLKLLL  226 (444)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCc------------------------------CCCCHHHHHHHHh
Confidence               2677778777777666655555555554222110                              0012334455567


Q ss_pred             ccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 013707          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (438)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (438)
                      +||.++..++..++............+.|.++..+ ++...+.+.....+..+++. ++.+++.||+|+|+....+....
T Consensus       227 ~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~gk~~~~~~~~~~~  304 (444)
T PRK09669        227 GNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGA-LLSERLLGKFDRVRAFKWTIVAF  304 (444)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHHHHHHHHHH
Confidence            78888877777666655555555555555555443 23333444444455556665 77889999999999888877665


Q ss_pred             HHHHHHhHh-c-ccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCC-------CcchhHHHHHhhHhhhhhhhhhHhHHH
Q 013707          324 CINMFICSI-S-WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGP-------NEQGKAQGCISGISSFANIVSPLIFSP  393 (438)
Q Consensus       324 ~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~~g~~~~g~  393 (438)
                      .+......+ . ++.+..++ .++.+++.+...+..++++.|..+.       +..|..+|..+....+|.++|+.+.|.
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~  384 (444)
T PRK09669        305 VILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW  384 (444)
T ss_pred             HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            543333222 2 23333333 5677888999999999999988752       334678899999999999999999999


Q ss_pred             HHHHHh
Q 013707          394 LTALFL  399 (438)
Q Consensus       394 l~~~~~  399 (438)
                      +.+..+
T Consensus       385 ll~~~G  390 (444)
T PRK09669        385 ILAWVD  390 (444)
T ss_pred             HHHHcC
Confidence            999754

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.93  E-value=3.1e-23  Score=196.68  Aligned_cols=324  Identities=15%  Similarity=0.120  Sum_probs=255.8

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhccccc----ccCcchHhH-HHHHHHHHHHHHHHhc-c-cch---hHHHHHHHH
Q 013707           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRKAMLT-LPLTLSIIPLAILAYR-R-SIS---FFYAYYALR  114 (438)
Q Consensus        45 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D----r~Grk~~l~-~~~~~~~~~~~~~~~~-~-~~~---~~~~l~~~r  114 (438)
                      ..++++...|.+..+..+..++..|+.|.++|    |+||||.++ ++....+++..++... | +.+   ....+.+..
T Consensus        31 ~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~  110 (428)
T PF13347_consen   31 VLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFY  110 (428)
T ss_pred             HcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHH
Confidence            55888899999999999999999999999999    899877655 6778888887777766 4 211   133456666


Q ss_pred             HhhhhcchhhHhhhhhHhhhccCC-ccchhHHHHHHHHHHHhhhhhhHhhhH----Hh-------hHHHHHHHHHHHHHH
Q 013707          115 TLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCGTLAAR----FL-------STTSAFQAATIVSML  182 (438)
Q Consensus       115 ~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~l~~----~~-------~w~~~f~~~~~~~~i  182 (438)
                      ++..+ +.........++.+|.++ ++||.+..+.-+....+|..+.+.+..    .+       +|++..++.+++.++
T Consensus       111 ~l~~~-~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v  189 (428)
T PF13347_consen  111 ILFDI-AYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLV  189 (428)
T ss_pred             HHHHH-hhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHH
Confidence            66777 777777788999999998 579999999988888888754433332    21       588888888888888


Q ss_pred             HHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhh
Q 013707          183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSE  262 (438)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (438)
                      ..++..+..||++++.+++                            +++.+.++.++.+++||.++...+..++.....
T Consensus       190 ~~~i~~~~~ke~~~~~~~~----------------------------~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~  241 (428)
T PF13347_consen  190 FFLITFFFVKERSVEVTEQ----------------------------EKKISLRDSLRSLFRNRPFRILLLAFFLQWLAF  241 (428)
T ss_pred             Hhhhhhheeeecccccccc----------------------------ccccccccchhhhcccchHHHHHHHHHHHHhhh
Confidence            8778788888822221111                            112244555666888999999999999988888


Q ss_pred             chhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcc--cchHHH
Q 013707          263 GGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW--SAWVPY  340 (438)
Q Consensus       263 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  340 (438)
                      .......+.|.++..|.+ ...+.+.....+..+++. ++.++++||+|+|+....+..+.+++.+.+.+.+  +.+..+
T Consensus       242 ~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~-~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (428)
T PF13347_consen  242 ALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGS-PLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVL  319 (428)
T ss_pred             hhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHH-HHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHH
Confidence            888889999999988877 455777777788888877 7889999999999999999999999988887775  555555


Q ss_pred             H-HHHHHhhhhhhHHHHHHHHhhcCCC-------CcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHh
Q 013707          341 A-TTAFSVLVVFATPSFRSIVSKQVGP-------NEQGKAQGCISGISSFANIVSPLIFSPLTALFL  399 (438)
Q Consensus       341 ~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  399 (438)
                      + ..+.+++.+.......++..|..+.       ++.|...|..+....++..+++.+.+.+.+..+
T Consensus       320 i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  320 ILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            5 6788999999999999999888763       446999999999999999999999999998754

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.93  E-value=1.8e-23  Score=180.15  Aligned_cols=370  Identities=15%  Similarity=0.056  Sum_probs=245.2

Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcch
Q 013707           43 LDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE  122 (438)
Q Consensus        43 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  122 (438)
                      +..++.+..+..++......+..+++..||..+|++|||+.+........+...+.+.++|   +..+++.|.+.|+ |.
T Consensus       105 ~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spn---f~~L~~f~~l~~~-g~  180 (528)
T KOG0253|consen  105 DEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPN---FASLCVFRALWGF-GV  180 (528)
T ss_pred             HhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCC---eehhhHHHHHHhc-cC
Confidence            3456677888899999999999999999999999999999999999999999999999999   9999999999999 77


Q ss_pred             hhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 013707          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPND  198 (438)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~  198 (438)
                      |. .|...++-.|..|..+|...+-.. ..+.+|.+....++..    +||||.....+.+..+. ....+.+||+|+-.
T Consensus       181 gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~-a~f~~w~~ESpRf~  257 (528)
T KOG0253|consen  181 GG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFA-ARFLVWVYESPRFY  257 (528)
T ss_pred             CC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHH-HHHHhhcccCcchh
Confidence            77 788999999999998888776666 7888888887766643    59999888887664443 44567899999854


Q ss_pred             CCCCCCcccch---hccccccC---------------CCCCCCCCc----cccccCCchhHHHHhhcccchhHHHHHHHH
Q 013707          199 DDDDLTRPIIT---EETEGVNQ---------------NESNSPVKI----PVCKKIPSIRDLICLLRSSVTLSQAAVVAF  256 (438)
Q Consensus       199 ~~~~~~~~~~~---~~~~~~~~---------------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (438)
                      -.+.+..++.+   +..+.+..               ++++...++    ..++.+....+.+..-.++.+ .......|
T Consensus       258 ~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrktt-lllw~iwf  336 (528)
T KOG0253|consen  258 LAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTT-LLLWRIWF  336 (528)
T ss_pred             hhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHH-HHHHHHHH
Confidence            43333333322   22211111               111111111    111112233332221111111 11222222


Q ss_pred             HHHhhhchhh-----------------HHHHHHHHhHcC--C-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 013707          257 FSGLSEGGMQ-----------------ASFLYFLKAQFH--F-NKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (438)
Q Consensus       257 ~~~~~~~~~~-----------------~~~~~~~~~~~g--~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  316 (438)
                      ...+.+++..                 ...|.+.+...+  . +..+.-- .....+....|. ++.+++.||+|||+.+
T Consensus       337 gnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrd-llitslaefPGl-LIt~~iverlGRKkTM  414 (528)
T KOG0253|consen  337 GNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRD-LLITSLAEFPGL-LITGVIVERLGRKKTM  414 (528)
T ss_pred             hhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHH-HHHHHHhhCCch-hHHHHHHHHhcchhHH
Confidence            2222222222                 222333332111  1 1111111 223455566666 8889999999999999


Q ss_pred             HHHHHHHHHHHHHhHhcccch-HHHHHHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHH
Q 013707          317 SLGLFAACINMFICSISWSAW-VPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  395 (438)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  395 (438)
                      ..++++.++..++.....+.. .....+..-++....+...+.|..|.+|...|+++.|.++.+..+|+++.|.++ ...
T Consensus       415 al~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~  493 (528)
T KOG0253|consen  415 ALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRA  493 (528)
T ss_pred             HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHh
Confidence            999999998888776655433 223345556677777888899999999999999999999999999999999988 322


Q ss_pred             HHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 013707          396 ALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSFY  432 (438)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (438)
                      +.         ....+..+.+.+++++.+...+..-+
T Consensus       494 e~---------s~sl~i~vy~~~~ilagIavcffPiE  521 (528)
T KOG0253|consen  494 EL---------STSLPIFVYGALFILAGIAVCFFPIE  521 (528)
T ss_pred             cc---------ceeehHHHHHHHHHHHHHHheeeeec
Confidence            22         23344555666666666665554433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.92  E-value=4.8e-22  Score=185.00  Aligned_cols=374  Identities=32%  Similarity=0.525  Sum_probs=276.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccch-hhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHH
Q 013707           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECS-LAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (438)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~   89 (438)
                      ..+....++..++.++..+..........+...++.+ .+....+.-.....+...+.++..|.++||+|||..+.....
T Consensus        21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~  100 (463)
T KOG2816|consen   21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF  100 (463)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence            3455566677777777776665555443322222221 112223333334478889999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHhhhh-cchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh-
Q 013707           90 LSIIPLAILAYRRSISFFYAYYALRTLTAM-VCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (438)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-  167 (438)
                      ...+..+...+...    |.++    +.++ ++.+.......++++|...+++|...+|+.+.....+..++|.++++. 
T Consensus       101 ~~~l~~~~~~~~~~----~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~  172 (463)
T KOG2816|consen  101 GTILPALCLLFQGY----WFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV  172 (463)
T ss_pred             HHHHhHHHHHHHHH----HHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            88888877777662    3322    3333 123456677899999999999999999999999999999999998874 


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcc
Q 013707          168 ---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS  244 (438)
Q Consensus       168 ---~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (438)
                         +.-.+|++..+..++..++...++||+.+++++++ .            ...+............+..+...+ ..+
T Consensus       173 ~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~  238 (463)
T KOG2816|consen  173 KFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD-A------------TLRELTPGSLDSSHVADAFQSLTK-VGP  238 (463)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccc-c------------cccccCCCcccchhhhhhhhhhcc-cCC
Confidence               66788999999999999999999999977665541 0            000000000111111112222111 334


Q ss_pred             cchhHHHHHHHHHHHhhhch-hhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 013707          245 SVTLSQAAVVAFFSGLSEGG-MQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (438)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (438)
                      +|..+.+....++....... .....+.|++..++|++.+.+.+.+..+....+++.+..+.+.+.++.++.+..|....
T Consensus       239 ~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~  318 (463)
T KOG2816|consen  239 DRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSE  318 (463)
T ss_pred             CccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHH
Confidence            45555544444444443332 23245788888999999999999999999999999777789999999999999999999


Q ss_pred             HHHHHHhHhcccchHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCC
Q 013707          324 CINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  403 (438)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~  403 (438)
                      .+..+.+++..+.|..+.............|...+..+..++++++|+++++...+..+...++|.+.+.++..+.+...
T Consensus       319 ~~~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~~~~~  398 (463)
T KOG2816|consen  319 FLQLLLFAFATETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTLDDLP  398 (463)
T ss_pred             HHHHHHHHHhccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHhcc
Confidence            99999999999999999988888889999999999999999999999999999999999999999999999998776655


Q ss_pred             CCC
Q 013707          404 PFN  406 (438)
Q Consensus       404 ~~~  406 (438)
                      +..
T Consensus       399 ~~~  401 (463)
T KOG2816|consen  399 GFL  401 (463)
T ss_pred             ccc
Confidence            443

>TIGR00788 fbt folate/biopterin transporter

Probab=99.91  E-value=2.5e-22  Score=191.27  Aligned_cols=391  Identities=12%  Similarity=0.023  Sum_probs=250.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccC-----cchHhHHH
Q 013707           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG-----RKAMLTLP   87 (438)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~G-----rk~~l~~~   87 (438)
                      +....+..++. ++....++.+.++       +++++..+.+...+...++..+-. ++|+++||++     ||+.++++
T Consensus        31 ~~~~y~~qGl~-~l~~~~~~~~l~~-------~lg~s~~~i~~~~sl~~lpw~~K~-l~g~l~D~~~i~G~rRr~~l~~~  101 (468)
T TIGR00788        31 GLQVLFVKGIA-GLMRLPLSPMLTD-------DLGLDGARYQRLVGLSSLGWALKP-FAGVMSDTFPLFGYTKRWYLVLS  101 (468)
T ss_pred             HHHHHHHhhHH-HHhhhhhhHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCccchHHHHHH
Confidence            33344555555 5555555555543       568888899899999999999855 4999999997     67777777


Q ss_pred             HHHHH-HHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHH---HHHHHHHHhhhhhhHhh
Q 013707           88 LTLSI-IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAF---GILLGVLSASFVCGTLA  163 (438)
Q Consensus        88 ~~~~~-~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~---~~~~~~~~~g~~~g~~l  163 (438)
                      .++.. +.....+..++  ......+..++.++ +.+...++..++..|..+ |++....   +......++|.++|+.+
T Consensus       102 ~~l~~~~~~~~l~~~~~--~~~~~~~~~~l~~~-~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l  177 (468)
T TIGR00788       102 GLLGSAILYGLLPGKVS--SAKVAAAFIFLAAL-AKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLL  177 (468)
T ss_pred             HHHHHHHHHHhcccccc--hHHHHHHHHHHHHH-HHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHH
Confidence            66653 33333333334  13344457888999 889999999999999998 5444432   23333344677777777


Q ss_pred             hHH----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHH
Q 013707          164 ARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (438)
Q Consensus       164 ~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (438)
                      ++.    ++|+..|++.+.+.++. .....++||+++...++.+.+.       .   ...............+..++..
T Consensus       178 ~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~l~  246 (468)
T TIGR00788       178 GGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERRAFVRPRIGTYL-------E---MNMALLTLGVLANVKVQILGLR  246 (468)
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHH-HHHHHhcccccccccccccccc-------h---hhhhhhhhhHHHHHHHHHHHHH
Confidence            766    48999999998887666 4445677886421111100000       0   0000000000000111233434


Q ss_pred             HhhcccchhHHHHHHHHH-HHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 013707          240 CLLRSSVTLSQAAVVAFF-SGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSL  318 (438)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  318 (438)
                      +. .++|.++...+..++ +........... .+..+.+|+++.+.|......+++.+++. ...+++.+|++.|+++.+
T Consensus       247 ~~-l~~~~i~~~l~fifl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~-~~~~~~~~~~~~r~~l~~  323 (468)
T TIGR00788       247 GA-IQLLEIAKPLIFIFLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCGV-GGYDRFLKTFPYRLLFGV  323 (468)
T ss_pred             HH-HhcHHHHHHHHHHHHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHHH-HHHHHHHhhCCHHHHHHH
Confidence            44 455667665555555 332222222211 13334589999999999999999999988 777888899999999999


Q ss_pred             HHHHHHHHHHHhHhc----------ccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhh
Q 013707          319 GLFAACINMFICSIS----------WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVS  387 (438)
Q Consensus       319 ~~~~~~~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g  387 (438)
                      +.++.+++.+.....          ++.+.... ..+.+++.+........++++..|++.+|+.+++.+.+.++|..++
T Consensus       324 ~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~  403 (468)
T TIGR00788       324 TTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVS  403 (468)
T ss_pred             HHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHH
Confidence            999888877554321          22222222 5677888888888889999999999999999999999999999999


Q ss_pred             hHhHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 013707          388 PLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLS  430 (438)
Q Consensus       388 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (438)
                      +.++|.+.++.+.....+.......++..+..++.+.....+.
T Consensus       404 ~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP  446 (468)
T TIGR00788       404 GFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLP  446 (468)
T ss_pred             HHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999998763333332223334444455555555554333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.91  E-value=3.4e-21  Score=173.45  Aligned_cols=259  Identities=12%  Similarity=0.094  Sum_probs=200.0

Q ss_pred             HHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH--------------------
Q 013707          107 FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF--------------------  166 (438)
Q Consensus       107 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~--------------------  166 (438)
                      ++.++++-++.|. |.+...+..+.++++..|+|++++.+++.+..+++|.++||.+++.                    
T Consensus        10 ~~~~l~~~f~~g~-G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~   88 (310)
T TIGR01272        10 YVLFLGALFVLAS-GLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA   88 (310)
T ss_pred             HHHHHHHHHHHHh-hHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence            8999999999999 9999999999999999999999999999999999999999999874                    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHH-HHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhccc
Q 013707          167 LSTTSAFQAATIVSMLAAAYM-RVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (438)
Q Consensus       167 ~~w~~~f~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (438)
                      .+|+++|++.+.+..+..+.. ...+||.+++++++                    ...++.     ...++    ..++
T Consensus        89 ~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~--------------------~~~~~~-----~~~~~----~~~~  139 (310)
T TIGR01272        89 AKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVAR--------------------VSSGDT-----TQKTS----AFQF  139 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccc--------------------cccccc-----cchhh----HHhh
Confidence            258899997666544443322 22334432111100                    000000     00011    3346


Q ss_pred             chhHHHHHHHHHHHhhhchhhHHHHHHHHhH--cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 013707          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ--FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (438)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (438)
                      |.++...+..+++.....+...+.+.|+++.  +|+++.+.+...+....+.++++ ++.+++.||+++++.+..+..+.
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr-~~~~~l~~r~g~~~~l~~~~~l~  218 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGR-FIGSAVMPMISQGRYLAFNAFLA  218 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHHH
Confidence            6677777888888888999999999999864  69999999999999999999999 88899999999999888888887


Q ss_pred             HHHHHHhHhcccchHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          324 CINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      .++.++....++....+...+.+++.+..+|...+...+..|+ +.+++.++. ....+|++++|.+.|.+.|..
T Consensus       219 ~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~  291 (310)
T TIGR01272       219 VLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCL  291 (310)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhc
Confidence            7777666555544444456678999999999999999988874 456777765 677899999999999999973

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.90  E-value=6.4e-20  Score=163.26  Aligned_cols=360  Identities=15%  Similarity=0.084  Sum_probs=264.8

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccC-----cchHhHH-HHHHHHHHHHHHHhc-----c-------cc-
Q 013707           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG-----RKAMLTL-PLTLSIIPLAILAYR-----R-------SI-  104 (438)
Q Consensus        44 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~G-----rk~~l~~-~~~~~~~~~~~~~~~-----~-------~~-  104 (438)
                      .|++++....+.+.++..+.+. ..+.+|..||+.+     ||..+++ +......+..+.+++     .       +. 
T Consensus         8 vEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~   86 (403)
T PF03209_consen    8 VELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW   86 (403)
T ss_pred             HHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence            4778888899999998887766 6899999999999     8887765 555555555544432     2       11 


Q ss_pred             hhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh----h-HHH--HHHHHH
Q 013707          105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----S-TTS--AFQAAT  177 (438)
Q Consensus       105 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~-w~~--~f~~~~  177 (438)
                      .......+.-.+.|+ +.+...+...++++|..|+|+|+++.++...+.-+|.+++..+.+.+    + -|.  .+...+
T Consensus        87 ~g~~~a~l~F~l~G~-G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a  165 (403)
T PF03209_consen   87 LGLALAALAFLLYGL-GVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVA  165 (403)
T ss_pred             HHHHHHHHHHHHHHh-hHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHH
Confidence            112345566677888 78888888999999999999999999999999999999998888764    1 122  222233


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHH
Q 013707          178 IVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFF  257 (438)
Q Consensus       178 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (438)
                      .+.++..++..+. .|++.++..+                         ...+++.++++.++.+..+|..+..+...++
T Consensus       166 ~i~~~l~~ia~wg-~E~r~~~~~~-------------------------~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l  219 (403)
T PF03209_consen  166 LIALLLNLIALWG-QEPRRSRRAA-------------------------AAERPRPPFREAWRQVWASPQARRFFVFLFL  219 (403)
T ss_pred             HHHHHHHHHHHHh-cccCCccccc-------------------------CCCCCCccHHHHHHHHHhCCChhHHHHHHHH
Confidence            3322222222222 2222211110                         1122334677777778889999999999999


Q ss_pred             HHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhhHHHHHHHHHHHHHHHhHhc---
Q 013707          258 SGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP-ILGEAKLLSLGLFAACINMFICSIS---  333 (438)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~---  333 (438)
                      ..+++......+-+|--|++|++..+...+....+.+..++. ...+++.. |.++++....++....+++.++..+   
T Consensus       220 ~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~-~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~  298 (403)
T PF03209_consen  220 GTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGM-LLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL  298 (403)
T ss_pred             HHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999988887 55565554 7788888888888888887776553   


Q ss_pred             ccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCC--CCCCCCch
Q 013707          334 WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKG--APFNFPGF  410 (438)
Q Consensus       334 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~--~~~~~~~~  410 (438)
                      .+.+.+-. .+++|++.+.......+.+.+..++++.|..+|.-...+.++..++..++|.+.|......  .+...++.
T Consensus       299 ~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~  378 (403)
T PF03209_consen  299 GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGV  378 (403)
T ss_pred             ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHH
Confidence            35555555 7889999999999999999999999999999999999999999999999999999754322  23334445


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhh
Q 013707          411 SIMCIGLASVRAFTYELLLSFY  432 (438)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~  432 (438)
                      .|.+=++..++++.+...+.++
T Consensus       379 VF~lEa~ll~~a~~ll~~l~~~  400 (403)
T PF03209_consen  379 VFALEAVLLLAALVLLGRLDRR  400 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhh
Confidence            6666666666666555544443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PTZ00207 hypothetical protein; Provisional

Probab=99.90  E-value=4.8e-20  Score=176.10  Aligned_cols=374  Identities=10%  Similarity=0.021  Sum_probs=248.5

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhc------ccchhHHHHHHHHHhhh
Q 013707           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR------RSISFFYAYYALRTLTA  118 (438)
Q Consensus        45 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~r~l~G  118 (438)
                      +++.+..+.+++.+.. .....++++.|+++||+|||+++.++.++..+++++++++      ++   ++.+++.|++.|
T Consensus        56 ~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s---~~~l~l~r~l~G  131 (591)
T PTZ00207         56 RYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGS---VVRLSVYNGLMT  131 (591)
T ss_pred             HhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCc---HHHHHHHHHHHH
Confidence            5566667778877764 3445677789999999999999999999999999999987      46   899999999999


Q ss_pred             hcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhh-hHhhhHHh--hHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 013707          119 MVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC-GTLAARFL--STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (438)
Q Consensus       119 ~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~l~~~~--~w~~~f~~~~~~~~i~~~~~~~~~~~~~  195 (438)
                      + +.+...+.....+.+++| ++||++.|+.....++|..+ +++..+++  +|+..|++.+++.++..++...++++++
T Consensus       132 ~-G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~  209 (591)
T PTZ00207        132 L-GCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPP  209 (591)
T ss_pred             H-HHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence            9 888888888999999997 78999999999999999975 56666555  7899999998888887777777776665


Q ss_pred             CCCC--CC---CCCccc--------------------------------------ch----h------------c-----
Q 013707          196 PNDD--DD---DLTRPI--------------------------------------IT----E------------E-----  211 (438)
Q Consensus       196 ~~~~--~~---~~~~~~--------------------------------------~~----~------------~-----  211 (438)
                      .+..  ++   ++.++.                                      .+    .            .     
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~  289 (591)
T PTZ00207        210 FHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVI  289 (591)
T ss_pred             chhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            3221  00   111110                                      00    0            0     


Q ss_pred             -----------cccccC-C-CCCCCC----------Ccc-----ccc-cCCchhHHHHhhcccchhHHHHHHHHHHHhhh
Q 013707          212 -----------TEGVNQ-N-ESNSPV----------KIP-----VCK-KIPSIRDLICLLRSSVTLSQAAVVAFFSGLSE  262 (438)
Q Consensus       212 -----------~~~~~~-~-~~~~~~----------~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (438)
                                 +....+ + +.+...          .+.     +.+ ..+...+.+....++..+|.++...++.....
T Consensus       290 ~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~g  369 (591)
T PTZ00207        290 FPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAH  369 (591)
T ss_pred             HHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCch
Confidence                       000000 0 000000          000     000 00111112222334667888888888887777


Q ss_pred             chhhHHHHHHHHhHcCCCh-hH-HHHHHHHHHHHHHHHHHHHHHHHHHhhch--------hh-HHHHHHHHHHHHHHHhH
Q 013707          263 GGMQASFLYFLKAQFHFNK-NQ-FADLMLIAGLAGTISQLLFMPLLAPILGE--------AK-LLSLGLFAACINMFICS  331 (438)
Q Consensus       263 ~~~~~~~~~~~~~~~g~~~-~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~-~~~~~~~~~~~~~~~~~  331 (438)
                      ..+...+....+..-|.+. .+ ...+.+..++.+.+|+ +..|.++....+        |. .+.+..+ +.++.+++.
T Consensus       370 l~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GR-l~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~  447 (591)
T PTZ00207        370 FVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGR-LCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLF  447 (591)
T ss_pred             heeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhH-HHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHH
Confidence            6666666666666326623 32 2226778888888888 777776622111        12 3334444 666666666


Q ss_pred             hcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhh-hHhHHHHHHHHhcCCCCC----
Q 013707          332 ISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVS-PLIFSPLTALFLSKGAPF----  405 (438)
Q Consensus       332 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g-~~~~g~l~~~~~~~~~~~----  405 (438)
                      +..+...+++ .++.|++.|...+.....++|++. ++-|+-+-+.....-+|..+- ..++|.+||.-.......    
T Consensus       448 ~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G  526 (591)
T PTZ00207        448 LTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTE  526 (591)
T ss_pred             HHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCC
Confidence            6554234454 788999999999999999999999 999999888888888887776 678899998754322211    


Q ss_pred             -CCCchHHHHHHHHHHHHHHHHH
Q 013707          406 -NFPGFSIMCIGLASVRAFTYEL  427 (438)
Q Consensus       406 -~~~~~~~~~~~~~~~~~~~~~~  427 (438)
                       .-...++++.+.++..+.+...
T Consensus       527 ~~C~~~~~~v~~~~~~~g~~~s~  549 (591)
T PTZ00207        527 RVCVVMPLAFLLGLSFLAFITST  549 (591)
T ss_pred             ceeeHhHHHHHHHHHHHHHHHHh
Confidence             0112356666666666655543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.89  E-value=1e-19  Score=166.73  Aligned_cols=351  Identities=15%  Similarity=0.085  Sum_probs=272.0

Q ss_pred             HHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccc----cCcchH-hHHHHH
Q 013707           15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAM-LTLPLT   89 (438)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grk~~-l~~~~~   89 (438)
                      .+.+...+........+..+..       +..++++...|.+..+.-+--++..|+.|.++||    +||+|+ ++.+.+
T Consensus        19 ~gd~~~~~~~~~~~~yLl~fYT-------dv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~i   91 (467)
T COG2211          19 LGDFASNFAFGIVVLYLLFFYT-------DVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAI   91 (467)
T ss_pred             chhhHHHHHHHHHHHHHHHHHh-------cccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhH
Confidence            3444454555555555555543       4678999999999999999999999999999995    788655 456778


Q ss_pred             HHHHHHHHHHhcccc---hhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCC-ccchhHHHHHHHHHHHhhhhhh-----
Q 013707           90 LSIIPLAILAYRRSI---SFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCG-----  160 (438)
Q Consensus        90 ~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g-----  160 (438)
                      ..++.+.++..+++.   ......++...+.++ +.......-.++.+|.++ ++||.+..++-+...++|..+.     
T Consensus        92 p~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l-~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~  170 (467)
T COG2211          92 PFAIVAVLLFITPDFSMTGKLIYALVTYMLLGL-GYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFP  170 (467)
T ss_pred             HHHHHHHHHHcCCCcccCcchHHHHHHHHHHHH-HHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888742   225566777788888 888888889999999997 6899999999999888886554     


Q ss_pred             HhhhHH------hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCc
Q 013707          161 TLAARF------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPS  234 (438)
Q Consensus       161 ~~l~~~------~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (438)
                      |++...      .||+..-.+.+++..+..+.+++..+|...+..+.                          +.+.+.+
T Consensus       171 plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~--------------------------~~~~~~~  224 (467)
T COG2211         171 PLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPT--------------------------KTGVKLK  224 (467)
T ss_pred             HHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccC--------------------------ccccccc
Confidence            332221      37888888888888778778888888876543322                          0012235


Q ss_pred             hhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 013707          235 IRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (438)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  314 (438)
                      +++.+...++||.++..++..++.........+...+|.+..+|.++..............+++. ++.+++.+|+|+|+
T Consensus       225 ~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~-~~~p~L~~~~gkk~  303 (467)
T COG2211         225 LKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGL-ILWPRLVKKFGKKK  303 (467)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhchHH
Confidence            56666667889989888888888888888888888999998888888887777777666666656 88899999999999


Q ss_pred             HHHHHHHHHHHHHHHhHhcccc--hHHHH-HHHHHhhhhhhHHHHHHHHhhcCCC-------CcchhHHHHHhhHhhhhh
Q 013707          315 LLSLGLFAACINMFICSISWSA--WVPYA-TTAFSVLVVFATPSFRSIVSKQVGP-------NEQGKAQGCISGISSFAN  384 (438)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~  384 (438)
                      +...+.++..++.+++.+.+..  +..++ .++.+++.+...+..+++++|.++-       +..|...|.+...+.+|.
T Consensus       304 ~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~  383 (467)
T COG2211         304 LFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGL  383 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            9999999999999998887733  33333 4677888999999999999887643       345889999999999999


Q ss_pred             hhhhHhHHHHHHHHhc
Q 013707          385 IVSPLIFSPLTALFLS  400 (438)
Q Consensus       385 ~~g~~~~g~l~~~~~~  400 (438)
                      +++..+.|++.+..+.
T Consensus       384 ala~~~~g~~L~~~Gy  399 (467)
T COG2211         384 ALAGFIPGWILGAIGY  399 (467)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999999999998653

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.89  E-value=9.7e-20  Score=171.26  Aligned_cols=378  Identities=10%  Similarity=0.008  Sum_probs=225.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhccccccc-CcchHh
Q 013707            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAML   84 (438)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grk~~l   84 (438)
                      .+|.++.++...+...++.......+|.|..+       +++.+..+.+.+.+.+.....++.++.|+++||+ ||||++
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~-------~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i   79 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTN-------QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV   79 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH
Confidence            35667777778888888888888899999764       3566778889999999999999999999999999 999999


Q ss_pred             HHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCcc--chhHHHHHHHHHHHhhhhhhHh
Q 013707           85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER--QRASAFGILLGVLSASFVCGTL  162 (438)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~  162 (438)
                      .++.++.+++.++.+..++.  ...+.+...+.++ +.|...+...++++|.+|++  +|..++++.....++|..++|.
T Consensus        80 liG~il~~lg~lll~~~~~~--~~~~~l~l~li~i-G~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~  156 (493)
T PRK15462         80 MLGALLMAIGHVVLGASEIH--PSFLYLSLAIIVC-GYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPI  156 (493)
T ss_pred             HHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHH-hcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHH
Confidence            99999999988776654321  1223333333344 44566677789999999875  6888999999999999999999


Q ss_pred             hhHHh----hHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-C-CCCCCcccchhc--------ccc----ccCCCCCCCC
Q 013707          163 AARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPND-D-DDDLTRPIITEE--------TEG----VNQNESNSPV  224 (438)
Q Consensus       163 l~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~--------~~~----~~~~~~~~~~  224 (438)
                      +.+++    ||++.|.+.++..++. ++.+...++..++. . ++++.++.....        ...    ......++..
T Consensus       157 l~g~L~~~~Gw~~~F~iaaigm~l~-li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (493)
T PRK15462        157 ACGYAQEEYSWAMGFGLAAVGMIAG-LVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEW  235 (493)
T ss_pred             HHHHHHhhhChHHHHHHHHHHHHHH-HHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98875    8999999876543333 33222222111110 0 000000000000        000    0000000000


Q ss_pred             Cccccc--cCCc---hhHHH-Hhh--cccchh---HHHHHHHHHHHhhhchhhHHHHHHHHhHcCCCh----hHHHHHHH
Q 013707          225 KIPVCK--KIPS---IRDLI-CLL--RSSVTL---SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNK----NQFADLML  289 (438)
Q Consensus       225 ~~~~~~--~~~~---~~~~~-~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~  289 (438)
                      .....-  ....   +.... +..  .+++++   ..+++...++...+....+.+..|.++..+.+-    ...++..+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qs  315 (493)
T PRK15462        236 SVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQS  315 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHh
Confidence            000000  0000   00000 000  012222   223333344444455555666777766432220    12356677


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhch--h-----hHHHHHHHHHHHHHHHhHhcc---------cchHHHH-HHHHHhhhhhh
Q 013707          290 IAGLAGTISQLLFMPLLAPILGE--A-----KLLSLGLFAACINMFICSISW---------SAWVPYA-TTAFSVLVVFA  352 (438)
Q Consensus       290 ~~~~~~~~~~~~~~~~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~  352 (438)
                      .+.+..++.+ ++..++-.|..+  |     .=...|+++.+++++.+.+..         +.+.++. ..+..++.-+.
T Consensus       316 lNp~~ii~l~-P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~  394 (493)
T PRK15462        316 INAFAVMLCG-VFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFI  394 (493)
T ss_pred             HhHHHHHHHH-HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence            7777777777 443444344421  1     125678888888877775421         2222333 57788999999


Q ss_pred             HHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          353 TPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       353 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      .|...+.+++..|++.+|+.+|......   .++|+.++|.+.+..
T Consensus       395 sPvgls~~~~laP~~~~g~~mg~w~l~~---~~~~~~~~g~~~~~~  437 (493)
T PRK15462        395 DPVAMSQITRIEIPGVTGVLTGIYMLLS---GAIANYLAGVIADQT  437 (493)
T ss_pred             ChHHHHHHHHhChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence            9999999999999999999999884422   245555555555543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.88  E-value=1.1e-21  Score=163.22  Aligned_cols=355  Identities=13%  Similarity=0.061  Sum_probs=241.2

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHhhhhcccccc-cCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcch
Q 013707           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE  122 (438)
Q Consensus        44 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  122 (438)
                      .+.++...+..++.+.+.....+...+.|++.|| +|-|..-++-+....++.++.+.-.-.+.+|.+..+|++.|+++.
T Consensus        72 ~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgE  151 (459)
T KOG4686|consen   72 LDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGE  151 (459)
T ss_pred             cccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCch
Confidence            3556666677888999999999999999999997 577766555555555666655543222239999999999999444


Q ss_pred             hhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhh----HhhhHHhh------------HHHHHH-HHHHHHHHHHH
Q 013707          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCG----TLAARFLS------------TTSAFQ-AATIVSMLAAA  185 (438)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g----~~l~~~~~------------w~~~f~-~~~~~~~i~~~  185 (438)
                      + .-.+.+.+..-|++.||.+.++|+......+|..+-    |.+....+            -...+- ......++++.
T Consensus       152 S-lAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical  230 (459)
T KOG4686|consen  152 S-LAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICAL  230 (459)
T ss_pred             h-hhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 446789999999999999999999999888887653    33332221            111111 11111112111


Q ss_pred             HHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchh
Q 013707          186 YMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGM  265 (438)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (438)
                      ..  -.-|++.+..-+           .++..     ..++++.+   +.++      -.|.+|.+.+.++++..+...+
T Consensus       231 ~l--g~~D~rAerilh-----------~e~g~-----~Ge~pkLt---dv~~------f~ppfw~~~iicv~yyva~fPF  283 (459)
T KOG4686|consen  231 SL--GLSDDRAERILH-----------LEEGF-----LGEEPKLT---DVNT------FYPPFWVLVIICVLYYVAWFPF  283 (459)
T ss_pred             Hh--hhhhhHHHHHHh-----------hhcCc-----ccCCcccc---cccc------cCccHHHHHHHHHHHHHHHHHH
Confidence            11  111111110000           00000     00011111   1111      1456888899999999999999


Q ss_pred             hHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH-HHHHHHhHhcccchHHHH-HH
Q 013707          266 QASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA-CINMFICSISWSAWVPYA-TT  343 (438)
Q Consensus       266 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~  343 (438)
                      .+.-|.++++++|+|+.+++.+.+.......+.+ .+.|.++||.|++.....+..+. ..+-..+.+  +.+..+. +.
T Consensus       284 i~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~s-pvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~  360 (459)
T KOG4686|consen  284 ITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLS-PVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMT  360 (459)
T ss_pred             hhhhHHHHHHhhCCChhhccchhhhhhhhhhhhh-hhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHH
Confidence            9999999999999999999999999888888888 88899999999876655444333 333333322  3344444 67


Q ss_pred             HHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHH
Q 013707          344 AFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAF  423 (438)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (438)
                      ++|..........+..+...+|+++.|+++|.++.++++|-++.|.+.|.+.|..++    +.+....++..+.+.+...
T Consensus       361 ~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~----y~~le~ffl~~~~~aL~sv  436 (459)
T KOG4686|consen  361 FLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGS----YDNLEAFFLIIGLMALTSV  436 (459)
T ss_pred             HHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCc----hhhHHHHHHHHHHHHHHHH
Confidence            778888777777888888899999999999999999999999999999999986433    2345556777777777777


Q ss_pred             HHHHhhhhhh
Q 013707          424 TYELLLSFYV  433 (438)
Q Consensus       424 ~~~~~~~~~~  433 (438)
                      .+.+...+++
T Consensus       437 gil~~~N~kq  446 (459)
T KOG4686|consen  437 GILFYLNKKQ  446 (459)
T ss_pred             HHHhheeccc
Confidence            7777666554

>PRK11462 putative transporter; Provisional

Probab=99.88  E-value=5.5e-19  Score=168.28  Aligned_cols=342  Identities=11%  Similarity=0.013  Sum_probs=227.0

Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccc----cCcchHhH-HHHHH
Q 013707           16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAMLT-LPLTL   90 (438)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grk~~l~-~~~~~   90 (438)
                      +.+...+...+....+..+..       +..++++...|.+..+.-+--++..|+.|.++||    +||||+++ ++.+.
T Consensus        17 g~~~~~~~~~~~~~~l~~fyt-------~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~   89 (460)
T PRK11462         17 GDAASHIIFDNVMLYMMFFYT-------DIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALP   89 (460)
T ss_pred             chhhhhHHHHHHHHHHHHHHH-------HhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHH
Confidence            333334444444444555543       3568889999999999999999999999999996    69877665 56677


Q ss_pred             HHHHHHHHHhcccch---hHHHHHHHHHhhhhcchhhHhhhhhHhhhccCC-ccchhHHHHHHHHHHHhhhhhhHhhhH-
Q 013707           91 SIIPLAILAYRRSIS---FFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCGTLAAR-  165 (438)
Q Consensus        91 ~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~l~~-  165 (438)
                      .+++..++...|+.+   ....+.+...+..+ +.......-.++.+|.++ +|||++..++......+|..+++.+.. 
T Consensus        90 ~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~-~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~p  168 (460)
T PRK11462         90 FGIVCVLAYSTPDLSMNGKMIYAAITYTLLTL-LYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMP  168 (460)
T ss_pred             HHHHHHHHHhCCCCCcchHHHHHHHHHHHHHH-HHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777776665555311   13345556666677 667777788899999997 789999999999888888777655432 


Q ss_pred             ---Hh-------hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCch
Q 013707          166 ---FL-------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSI  235 (438)
Q Consensus       166 ---~~-------~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (438)
                         .+       +|+....+.+++.+++..+.....||.++++++                               +.+.
T Consensus       169 lv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~-------------------------------~~~~  217 (460)
T PRK11462        169 LVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPT-------------------------------TTSM  217 (460)
T ss_pred             HHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCcc-------------------------------CCCH
Confidence               12       466666666666555554444444554321111                               1134


Q ss_pred             hHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 013707          236 RDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (438)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  315 (438)
                      ++.++...+||.++......++..............|.+..+|.+ ...+.+.....+.++++. ++.+++.||+++|+.
T Consensus       218 ~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~-~l~~~l~~r~gkk~~  295 (460)
T PRK11462        218 REDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGS-ALAKPLTDWKCKVTI  295 (460)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHH
Confidence            555666777888877766666666665555566666666655543 344556667777778877 888999999999888


Q ss_pred             HHHHHHHHHHHHHHhHhcccc--hHHHH-HHHHHhhhhhhHHHHHHHHhhcCC-------CCcchhHHHHHhhHhhhhhh
Q 013707          316 LSLGLFAACINMFICSISWSA--WVPYA-TTAFSVLVVFATPSFRSIVSKQVG-------PNEQGKAQGCISGISSFANI  385 (438)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~~g~~  385 (438)
                      ...+.....+....+.+.++.  +..+. .++.+++.+...+..+++..|..+       .+..|..++..+....+|.+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~a  375 (460)
T PRK11462        296 FWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLA  375 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            765544443333333332222  12222 345566666666666777777665       33346667877899999999


Q ss_pred             hhhHhHHHHHHHH
Q 013707          386 VSPLIFSPLTALF  398 (438)
Q Consensus       386 ~g~~~~g~l~~~~  398 (438)
                      +++.+.|.+.+..
T Consensus       376 lg~~i~g~iL~~~  388 (460)
T PRK11462        376 FGGALIGWMLAYG  388 (460)
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999999874

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.88  E-value=1.3e-20  Score=172.76  Aligned_cols=361  Identities=17%  Similarity=0.215  Sum_probs=252.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCc-chHhH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-KAMLT   85 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Gr-k~~l~   85 (438)
                      +|.+++..+..++.....+++.|..-+|.++.      |.+.+....|++.++..++.+++++..|++..|.++ |++++
T Consensus        33 wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~l------D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli  106 (488)
T KOG2325|consen   33 WRSIYLALLNSFLVAVQFSIYLTSMWPYLQKL------DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLI  106 (488)
T ss_pred             hHhHHHHHHHHHHHhhhheEEEeecchhhhhc------CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHH
Confidence            56788888999999999999999999998853      455566788999999999999999999999999997 99999


Q ss_pred             HHHHHHHHHHHHH-Hhcccch-hHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhh
Q 013707           86 LPLTLSIIPLAIL-AYRRSIS-FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (438)
Q Consensus        86 ~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l  163 (438)
                      .+.++..++.++. ++..-.+ ..+.++++|++.|+ |.+.. ....+|+++....++|.++++....+..+|.++||.+
T Consensus       107 ~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gv-g~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~  184 (488)
T KOG2325|consen  107 VSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGV-GVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTI  184 (488)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCc-CcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHH
Confidence            9999999999998 4442222 47899999999999 75655 5799999999999999999999999999999999888


Q ss_pred             hHHh------h-----------HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCc
Q 013707          164 ARFL------S-----------TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKI  226 (438)
Q Consensus       164 ~~~~------~-----------w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (438)
                      +..+      |           +..+-|+.+++.++..+...++++|.+++..++...+            +++++..++
T Consensus       185 q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~------------~~~~~~~~~  252 (488)
T KOG2325|consen  185 QLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRS------------VEEEKSDIE  252 (488)
T ss_pred             HHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCcccccccc------------chhhccchh
Confidence            7664      1           2467788888888888888889999877654431100            000000000


Q ss_pred             cccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHH----HHHHHHHHHHHHHHHHHH
Q 013707          227 PVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQF----ADLMLIAGLAGTISQLLF  302 (438)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~  302 (438)
                      ..+.   +--       +.+..+.++...+...+......+..+......++++.++.    |...+..++...... +.
T Consensus       253 ~~~~---~~~-------d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~-l~  321 (488)
T KOG2325|consen  253 KVKK---PKL-------DWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILL-LL  321 (488)
T ss_pred             hhcc---CCh-------hHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHH-HH
Confidence            0000   101       12234445555555666666666777777777788877765    444444444444433 22


Q ss_pred             HHHHH-HhhchhhHHHHHHHHHHHHHHHhHhc----c---------------------------cchHHHH--HHHHHhh
Q 013707          303 MPLLA-PILGEAKLLSLGLFAACINMFICSIS----W---------------------------SAWVPYA--TTAFSVL  348 (438)
Q Consensus       303 ~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~---------------------------~~~~~~~--~~~~~~~  348 (438)
                      ..... .++.+|+.+..+++.......+..+.    .                           +.+..+.  ..++|.+
T Consensus       322 ~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~  401 (488)
T KOG2325|consen  322 YIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIA  401 (488)
T ss_pred             HHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccc
Confidence            22222 23344555555544333333332210    0                           0011112  2445566


Q ss_pred             hhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          349 VVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      .........+..+|...|.++++..|.++.....+..++|.+...++...
T Consensus       402 ~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~  451 (488)
T KOG2325|consen  402 FPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS  451 (488)
T ss_pred             cccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc
Confidence            66667778889999999999999999999999999999999999888874

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.75  E-value=1.4e-15  Score=138.42  Aligned_cols=373  Identities=13%  Similarity=0.056  Sum_probs=237.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhccccccc-CcchHhH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAMLT   85 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grk~~l~   85 (438)
                      .|.++.++...+-..+++.-....+..|+.....++   ++.+.....-+.+.|.--.-+...+.|+++||+ |+|+.+.
T Consensus        20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g---Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~   96 (498)
T COG3104          20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG---LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV   96 (498)
T ss_pred             CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc---CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            467788888888899998777777777777654333   667777777777777777777889999999996 9999999


Q ss_pred             HHHHHHHHHHHHHHhcc--cchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCcc--chhHHHHHHHHHHHhhhhhhH
Q 013707           86 LPLTLSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER--QRASAFGILLGVLSASFVCGT  161 (438)
Q Consensus        86 ~~~~~~~~~~~~~~~~~--~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~  161 (438)
                      .+.++.+++.++.+.+.  +   ...++++-.+.++ |.|..-|...+++.|.+|++  +|-..+++...+.++|..++|
T Consensus        97 lGail~~iGh~~L~~~~~~~---~~gl~i~L~~I~i-G~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p  172 (498)
T COG3104          97 LGAILMAIGHLVLAISSVSG---PGGLYIGLALIIV-GTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAP  172 (498)
T ss_pred             HHHHHHHHHHHHHhcccccc---ccHHHHHHHHHHh-ccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHH
Confidence            99999999999999885  5   6778888888899 89999999999999999865  467778888888899999998


Q ss_pred             hhhHHh----hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCC-----Ccccchh--------cccc----ccCCCC
Q 013707          162 LAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDL-----TRPIITE--------ETEG----VNQNES  220 (438)
Q Consensus       162 ~l~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--------~~~~----~~~~~~  220 (438)
                      .+.+++    +|+..|.+.++-..+..+. ....|........+++     .+.....        ....    ..++.-
T Consensus       173 ~i~~~~~~~~g~~~gF~~aavGm~~gl~~-f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  251 (498)
T COG3104         173 IITGLLAINYGWHVGFGLAAVGMIIGLVI-FLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTF  251 (498)
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHHH-HHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            887774    8899998887665444333 3333322111111100     0000000        0000    000000


Q ss_pred             CCCC-------C----ccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCC----hhHHH
Q 013707          221 NSPV-------K----IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFN----KNQFA  285 (438)
Q Consensus       221 ~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~  285 (438)
                      ....       .    ....+..+...+    .+|-.....+++...+++..+....+.+..|..+..+.+    +...+
T Consensus       252 ~~~~~~~~i~~~~~~~~~~~~~~~~~~e----r~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~  327 (498)
T COG3104         252 SGVLLVISILIAIIYFAEAFRSPKVFDE----RRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPA  327 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCccHHH----HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHH
Confidence            0000       0    000000000011    000011222333444444444445555666665432222    12235


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchh-------hHHHHHHHHHHHHHHHhHhc-------c---cchHHHH-HHHHHh
Q 013707          286 DLMLIAGLAGTISQLLFMPLLAPILGEA-------KLLSLGLFAACINMFICSIS-------W---SAWVPYA-TTAFSV  347 (438)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~-~~~~~~  347 (438)
                      +..+...+..++.+ ++..++..+.+++       .-...+..+++.+++++...       +   +.+..+. .++.++
T Consensus       328 ~fQslNp~~Iii~~-pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~  406 (498)
T COG3104         328 WFQSLNPFFIILFS-PILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSF  406 (498)
T ss_pred             HHHhhCHHHHHHHH-HHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            66777777777777 4445665553332       23456666666666666553       2   2233333 578899


Q ss_pred             hhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHH
Q 013707          348 LVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFS  392 (438)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g  392 (438)
                      +.-+..|...+++.+..|+...+..++..-.....++.++..+.+
T Consensus       407 gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         407 GELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            999999999999999999988888888888777777777776666

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.75  E-value=7.5e-16  Score=137.73  Aligned_cols=323  Identities=12%  Similarity=0.005  Sum_probs=223.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccc---hhHH--HHHHHHHhhhhcchhh
Q 013707           50 IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI---SFFY--AYYALRTLTAMVCEGS  124 (438)
Q Consensus        50 ~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~---~~~~--~l~~~r~l~G~~~~~~  124 (438)
                      ....-|...+|.+.+.....+.-|+.|++|-|...+++..+..++..+-..+..+   +.++  ....+..+.+. ++-.
T Consensus        78 ~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~-Aq~F  156 (480)
T KOG2563|consen   78 SSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAA-AQPF  156 (480)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHH-hhhH
Confidence            3455688888999999999999999999999999999999999999888776543   3344  77788888888 7666


Q ss_pred             HhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH----------hhHHH--HHHHHHHHHHHHHHHHHHhcc
Q 013707          125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----------LSTTS--AFQAATIVSMLAAAYMRVFLK  192 (438)
Q Consensus       125 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----------~~w~~--~f~~~~~~~~i~~~~~~~~~~  192 (438)
                      ....-.-+..-|++++||..+..+-..++.+|..+|-++...          ..|..  .|+....+..+.+.+..+..+
T Consensus       157 im~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~  236 (480)
T KOG2563|consen  157 ILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFT  236 (480)
T ss_pred             hhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            665556777889999999999988887777777766554433          24543  455555554444444444455


Q ss_pred             cCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHH
Q 013707          193 DDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYF  272 (438)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (438)
                      +.|+.+....                        .......++.+..+..++++++....+........++...+.+..-
T Consensus       237 ~~P~tPps~s------------------------~~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~  292 (480)
T KOG2563|consen  237 KKPPTPPSAS------------------------QAALQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLA  292 (480)
T ss_pred             CCCCCCCchh------------------------HhhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence            5443222210                        0000012455555667778888777666666555555555555544


Q ss_pred             HHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhch-hhHHHHHHHHHHHH-HHHhHhcc---cchHHHH-HHHHH
Q 013707          273 LKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE-AKLLSLGLFAACIN-MFICSISW---SAWVPYA-TTAFS  346 (438)
Q Consensus       273 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~-~~~~~  346 (438)
                      +.. -|++....|+......+++++++ .+.|.+.||.++ |.+..+......++ +.+.....   ..+.++. ..++|
T Consensus       293 l~~-sgY~~~~aG~ig~l~iv~Gmlga-~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g  370 (480)
T KOG2563|consen  293 LCP-SGYEGVFAGYIGALMIVAGMLGA-LASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLG  370 (480)
T ss_pred             ccc-ccCCccccchhHHHHHHHHHHHH-HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHH
Confidence            444 37777788999999999999998 888999999887 44444444444444 22222221   2333333 67888


Q ss_pred             hhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHh
Q 013707          347 VLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFL  399 (438)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  399 (438)
                      ++.....|...-+..|..-|+.-++-.|+.+...++-+.+-..+.+...+..+
T Consensus       371 ~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~  423 (480)
T KOG2563|consen  371 FFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLG  423 (480)
T ss_pred             HhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccC
Confidence            88888889888888888877888899999999988888888888777766543

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.72  E-value=5.6e-19  Score=168.91  Aligned_cols=374  Identities=15%  Similarity=0.200  Sum_probs=2.9

Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHH
Q 013707           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII   93 (438)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~   93 (438)
                      ++..++..+..+.....++.+        +..++++..+.|++.+.+-++..+..++..++.+|..|-|.+-.+.++.++
T Consensus         9 ~~~~~~q~~~~g~~~~~ltti--------ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~   80 (539)
T PF03137_consen    9 CLLGLFQMMVSGYVNSSLTTI--------ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGL   80 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--------HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHH
Confidence            333444444445555555555        447789999999999999999999999999999998888888889999999


Q ss_pred             HHHHHHhcc----c-------------------------------------------chhHHHHHHHHHhhhhcchhhHh
Q 013707           94 PLAILAYRR----S-------------------------------------------ISFFYAYYALRTLTAMVCEGSIN  126 (438)
Q Consensus        94 ~~~~~~~~~----~-------------------------------------------~~~~~~l~~~r~l~G~~~~~~~~  126 (438)
                      +++++++-+    .                                           ...++.+++++++.|+ |+...+
T Consensus        81 g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~Gi-G~~pl~  159 (539)
T PF03137_consen   81 GSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGI-GATPLY  159 (539)
T ss_dssp             -----------------------------------------------------------------------SS-S-----
T ss_pred             HHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhc-cccCCc
Confidence            988765310    0                                           0025788999999999 899999


Q ss_pred             hhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh--------------------------hHHHHHHHHHHHH
Q 013707          127 CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--------------------------STTSAFQAATIVS  180 (438)
Q Consensus       127 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~--------------------------~w~~~f~~~~~~~  180 (438)
                      +...+|+-|.+++++-+..+|++.+...+|.++|-++++..                          .|...|.+.+.+.
T Consensus       160 tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~  239 (539)
T PF03137_consen  160 TLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILL  239 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888777642                          1445566666665


Q ss_pred             HHHHHHHHHhcccCCCCCC-CCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHH
Q 013707          181 MLAAAYMRVFLKDDVPNDD-DDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSG  259 (438)
Q Consensus       181 ~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (438)
                      ++..+... ..|++.++.. .+++.+...++.++...++..+....+...+..+++....+.+.+||.+....+......
T Consensus       240 ~l~aipl~-~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~  318 (539)
T PF03137_consen  240 FLSAIPLF-FFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFES  318 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHH-cCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            55544443 4454433321 111100000000000000000000000011111222233344677999999999999999


Q ss_pred             hhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhhHHHHHHHHHHHHHHH---hHhc-
Q 013707          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG--EAKLLSLGLFAACINMFI---CSIS-  333 (438)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~---~~~~-  333 (438)
                      +...++.++.|-|++.+++.++.+++.+.....+.+...+.+++|.+.+|++  .|+.+....+...++.+.   ..+. 
T Consensus       319 ~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~  398 (539)
T PF03137_consen  319 FIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLG  398 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeec
Confidence            9999999999999999999999999888877777666555588999999875  355544444444433332   1110 


Q ss_pred             ------------c----------------------------------c---ch-HHHH-HHHHHhhhhhhHHHHHHHHhh
Q 013707          334 ------------W----------------------------------S---AW-VPYA-TTAFSVLVVFATPSFRSIVSK  362 (438)
Q Consensus       334 ------------~----------------------------------~---~~-~~~~-~~~~~~~~~~~~~~~~~~~~~  362 (438)
                                  .                                  +   .. .+.+ .++..+..+..........-+
T Consensus       399 C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR  478 (539)
T PF03137_consen  399 CPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLR  478 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeec
Confidence                        0                                  0   00 1111 122233444445555566678


Q ss_pred             cCCCCcchhHHHHHhhH-hhhhhhhhhHhHHHHHHH
Q 013707          363 QVGPNEQGKAQGCISGI-SSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       363 ~~~~~~~g~~~g~~~~~-~~~g~~~g~~~~g~l~~~  397 (438)
                      .+|+++|+.+.|+...+ +-+|.+-||.++|.+.|.
T Consensus       479 ~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  479 CVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ------------------------------------
T ss_pred             cCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            99999999999998765 467778899999999996

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.64  E-value=1.4e-13  Score=129.60  Aligned_cols=369  Identities=16%  Similarity=0.169  Sum_probs=229.9

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhccccccc---C--cchHhHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHhhh
Q 013707           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY---G--RKAMLTLPLTLSIIPLAILAYRRS-ISFFYAYYALRTLTA  118 (438)
Q Consensus        45 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~---G--rk~~l~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G  118 (438)
                      ++++++.+.....+...++.. ..+++|.++|.+   |  ||+-++++.++.+++...++..++ ..+.....+.-++..
T Consensus        19 ~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~   97 (433)
T PF03092_consen   19 DLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLAS   97 (433)
T ss_pred             HcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHH
Confidence            667777888888888788776 568899999986   3  455556677777666665555443 112455556667777


Q ss_pred             hcchhhHhhhhhHhhhccCC--ccchhHHHHHHHHHHHhhhhhhHhhhHHh----hHHHHHHHHHHHHHHHHHHHHHhcc
Q 013707          119 MVCEGSINCLALAYVADNIS--ERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLK  192 (438)
Q Consensus       119 ~~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~  192 (438)
                      + +.......+.+++.|...  +++|+...+.......+|.+++..++|.+    +++..|.+.+++..+..+...+..+
T Consensus        98 ~-g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen   98 F-GYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLE  176 (433)
T ss_pred             H-HHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence            7 788899999999999985  34477878888888888988888887764    6788888888777766555556566


Q ss_pred             cCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHH-HHHHHHhhhchhhHHHHH
Q 013707          193 DDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAV-VAFFSGLSEGGMQASFLY  271 (438)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  271 (438)
                      |.++.+..+ .             ....++..+......++..++.++.+ +.|.++...+ ..++............-.
T Consensus       177 e~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~~~a~~fy  241 (433)
T PF03092_consen  177 ERKVRPADE-V-------------FSFGKEEVPCLFGSFREQLSELWRAL-QQRAIWQPILFFIFFFNLPPSISSASSFY  241 (433)
T ss_pred             hccccccch-h-------------hcccccccchhhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHhccCCCCccEEE
Confidence            522111110 0             00000000000000112333333333 3455665555 333333333222120111


Q ss_pred             HHHhHcC---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHh-c---------ccchH
Q 013707          272 FLKAQFH---FNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSI-S---------WSAWV  338 (438)
Q Consensus       272 ~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~  338 (438)
                      +..+..+   +|+...+.+..+..++.+++. .+..+...+..-|+++....++.++..+.-.. .         ++.+.
T Consensus       242 ~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~-~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f  320 (433)
T PF03092_consen  242 FQTDALGGPHFSPSFYGTLSIVGSIASLLGI-LLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWF  320 (433)
T ss_pred             EEeccccccccCHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEE
Confidence            2233345   899888888877777777776 55555555667677777666665544332111 1         12221


Q ss_pred             HHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCCCCCchHHHHHHH
Q 013707          339 PYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGL  417 (438)
Q Consensus       339 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  417 (438)
                      ... ..+..+......-+.....++..|+...|+.+++..++.++|..++..++..+.+.++-.+..+.......++..+
T Consensus       321 ~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~  400 (433)
T PF03092_consen  321 ALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSV  400 (433)
T ss_pred             EEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHH
Confidence            112 4556666677777777889999999999999999999999999999999999998876444444444445555666


Q ss_pred             HHHHHHHHHHhhhh
Q 013707          418 ASVRAFTYELLLSF  431 (438)
Q Consensus       418 ~~~~~~~~~~~~~~  431 (438)
                      +.++.+.+...+.+
T Consensus       401 ~~ll~l~ll~lLp~  414 (433)
T PF03092_consen  401 IQLLPLPLLFLLPP  414 (433)
T ss_pred             HHHHHHHHHHHcCC
Confidence            66666666555444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK10054 putative transporter; Provisional

Probab=99.63  E-value=3.1e-14  Score=133.56  Aligned_cols=151  Identities=11%  Similarity=0.102  Sum_probs=131.2

Q ss_pred             cchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 013707          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (438)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  324 (438)
                      +|.++.+.+..++...+......++|.|+++++|+|+.+.|+..+...+...+.+ +..|+++||+|+|+.+..+.....
T Consensus         6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~-~~~G~l~Dr~g~k~~~~~~~~~~~   84 (395)
T PRK10054          6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFS-LGFGILADKFDKKRYMLLAITAFA   84 (395)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCcchhHHHHHHHHH
Confidence            4557777788888888888899999999998899999999999999999999988 888999999999999999999888


Q ss_pred             HHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          325 INMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       325 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      ++.+.+.+.++.+..+. ..+.+.+.+...+...++..|..|+++|+++.|+.+...++|..++|.+.+.+.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~  157 (395)
T PRK10054         85 SGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM  157 (395)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888777665554 3455556666678888999999999999999999999999999999999998875

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.62  E-value=5.2e-13  Score=117.61  Aligned_cols=273  Identities=13%  Similarity=0.071  Sum_probs=176.4

Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHH
Q 013707           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII   93 (438)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~   93 (438)
                      +....+...+..+..|..-...+        +.+.+..+++.+....+....+.+++.|.++||+|||+.-+.-.+++++
T Consensus        40 l~vY~La~~aDWLQGpY~Y~LY~--------~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~  111 (354)
T PF05631_consen   40 LLVYLLAMAADWLQGPYLYALYE--------SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSL  111 (354)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            33344556677777776544433        4566677889999999999999999999999999999999999999998


Q ss_pred             HHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhh-hccC----CccchhHHHHHHH-HHHHhhhhhhHhhhHHh
Q 013707           94 PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV-ADNI----SERQRASAFGILL-GVLSASFVCGTLAARFL  167 (438)
Q Consensus        94 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i-~~~~----~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~~  167 (438)
                      +++ +-..++   ++.++++|++.|+ +.+....+-.++. .|.-    |++..+..++... ..+++-.+.+..++..+
T Consensus       112 scl-~k~~~~---~~~L~~GRvlgGi-aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l  186 (354)
T PF05631_consen  112 SCL-TKHSSN---YPVLLLGRVLGGI-ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL  186 (354)
T ss_pred             HHH-HHhccc---cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence            886 445567   8999999999999 8888888877774 4442    2222333333333 22333334444444442


Q ss_pred             ------hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHh
Q 013707          168 ------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL  241 (438)
Q Consensus       168 ------~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (438)
                            |-..||....++..++.+++...-+|+..+..++                           .+..+..++..+.
T Consensus       187 ~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~---------------------------~~~~~~~~~a~~~  239 (354)
T PF05631_consen  187 ADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSS---------------------------SSLSGSFREAWRA  239 (354)
T ss_pred             HHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccc---------------------------cchHHHHHHHHHH
Confidence                  3367899888887777666666666654432221                           0111245566677


Q ss_pred             hcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 013707          242 LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLF  321 (438)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  321 (438)
                      ++++|+++.+.+...++-...+.+.....+-++.  +-+..-.|++++......++|+.+....++++......+.....
T Consensus       240 i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~--~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~  317 (354)
T PF05631_consen  240 ILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDP--DDEELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFA  317 (354)
T ss_pred             HHcCchhHHHHHHHHHHHHHHHHheeeeeceecC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            7888888777777766666666554444444432  11223459999999999999994443344455444444444444


Q ss_pred             HHHHHHH
Q 013707          322 AACINMF  328 (438)
Q Consensus       322 ~~~~~~~  328 (438)
                      +.++++.
T Consensus       318 ~aa~~l~  324 (354)
T PF05631_consen  318 VAAVSLA  324 (354)
T ss_pred             HHHHHHH
Confidence            4444443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.59  E-value=6.7e-15  Score=116.78  Aligned_cols=132  Identities=22%  Similarity=0.317  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccC
Q 013707           58 AIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI  137 (438)
Q Consensus        58 s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~  137 (438)
                      +.+.++..+++++.|++.||+|||+.+..+.....++.+...+.++   ++.+.+.+++.|+ +.+...+...+++.|..
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~   80 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN---ITVLIIARFLQGF-GAAFALVAGAALIADIY   80 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHhHHHHHHHHC
Confidence            3456788899999999999999999999999999999888888888   8889999999999 88888899999999999


Q ss_pred             CccchhHHHHHHHHHHHhhhhhhHhhhHHh----hHHHHHHHHHHHHHHHHHHHHHhccc
Q 013707          138 SERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKD  193 (438)
Q Consensus       138 ~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~~  193 (438)
                      |+++|++.++..+....+|..++|.+++.+    +|++.+++.+...++..+...+..||
T Consensus        81 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        81 PPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             ChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999888774    78999998888777766666665655

>TIGR00889 2A0110 nucleoside transporter

Probab=99.59  E-value=4.1e-14  Score=133.55  Aligned_cols=186  Identities=12%  Similarity=0.062  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHH
Q 013707           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (438)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~   91 (438)
                      .+.+..++............+.+.++.........+.+....|...++..++..++.++.|+++||+|||+++..+.++.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~  291 (418)
T TIGR00889       212 IFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAW  291 (418)
T ss_pred             eHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            34444444444444455566666654310000001234567799999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhcc-cchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHH-HHHHhhhhhhHhhhHHh--
Q 013707           92 IIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL-GVLSASFVCGTLAARFL--  167 (438)
Q Consensus        92 ~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~~--  167 (438)
                      .++..+..... +...++.+++.+++.|+ +.+...+....++.|.+|+++|++++|+.+ ...++|..+||.+++.+  
T Consensus       292 ~v~~~l~~~~~~~~~~~~~l~l~~~l~g~-~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~  370 (418)
T TIGR00889       292 ALRFGFFAYGDPEYFGYALLFLSMIVYGC-AFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVE  370 (418)
T ss_pred             HHHHHHHHHcCcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            88877666642 21124667788999999 788888888999999999999999999997 67889999999988763  


Q ss_pred             --------hHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 013707          168 --------STTSAFQAATIVSMLAAAYMRVFLKDDVPND  198 (438)
Q Consensus       168 --------~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~  198 (438)
                              ||+..|.+.+++.+++.++..+++||+.+..
T Consensus       371 ~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~  409 (418)
T TIGR00889       371 KMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI  409 (418)
T ss_pred             HhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence                    4899999998888888888888888875443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.59  E-value=6.4e-14  Score=134.39  Aligned_cols=367  Identities=16%  Similarity=0.169  Sum_probs=256.5

Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHH
Q 013707           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII   93 (438)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~   93 (438)
                      .+..+...+..+.+...+..+        ...++++..+.|++.+.+-++..+...+..+..-|..|-|.+-++.++.++
T Consensus       103 ~~~~~~q~l~~~y~~s~Itti--------ErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen  103 SLAAFAQGLYVGYFNSVITTI--------ERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL  174 (735)
T ss_pred             HHHHHHHHhhhhhhhhhhhhh--------hhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence            334444444444444444444        335677777889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcc------------------cc-------------------------------hhHHHHHHHHHhhhhcchhh
Q 013707           94 PLAILAYRR------------------SI-------------------------------SFFYAYYALRTLTAMVCEGS  124 (438)
Q Consensus        94 ~~~~~~~~~------------------~~-------------------------------~~~~~l~~~r~l~G~~~~~~  124 (438)
                      +.+++++-+                  +.                               ..+..++++.++.|+ |...
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GI-G~Tp  253 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGI-GATP  253 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhc-CCCC
Confidence            988876420                  00                               023478899999999 8899


Q ss_pred             HhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh-----------------------hHHHHHHHHHHHHH
Q 013707          125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----------------------STTSAFQAATIVSM  181 (438)
Q Consensus       125 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-----------------------~w~~~f~~~~~~~~  181 (438)
                      .++...+|+-|...+++-+..+|++.+...+|.++|-++|++.                       .|..-|++.+.+.+
T Consensus       254 i~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~  333 (735)
T KOG3626|consen  254 IFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLL  333 (735)
T ss_pred             CccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998888762                       26667778888877


Q ss_pred             HHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhH---HHHhhcccchhHHHHHHHHHH
Q 013707          182 LAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD---LICLLRSSVTLSQAAVVAFFS  258 (438)
Q Consensus       182 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  258 (438)
                      +..+.. +++|.+.++..++.+.   .+     .+...++....+........+++   ..+.+.+||.+....+...+.
T Consensus       334 ~~a~p~-f~fPk~lp~~~~~~~~---~~-----~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~  404 (735)
T KOG3626|consen  334 FSAVPL-FFFPKELPKSQKRKRA---RD-----LHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIE  404 (735)
T ss_pred             HHHHHH-HhCcccCccccccchh---hh-----hcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence            766555 4455554433321000   00     00000000001111111112333   344566799999999999999


Q ss_pred             HhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhhHHHHHHHHHHHHHHH---hHhc
Q 013707          259 GLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG--EAKLLSLGLFAACINMFI---CSIS  333 (438)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~---~~~~  333 (438)
                      ...+.++.+++|-|+++++|.++..+..+....++..+..+.+++|++.+|+.  .|......++...+.++.   ..+.
T Consensus       405 ~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~i  484 (735)
T KOG3626|consen  405 SLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFI  484 (735)
T ss_pred             HHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEe
Confidence            99999999999999999999999999999988888888777789999999875  355554444444444333   2210


Q ss_pred             -----------------------------------------------------------------cc------------c
Q 013707          334 -----------------------------------------------------------------WS------------A  336 (438)
Q Consensus       334 -----------------------------------------------------------------~~------------~  336 (438)
                                                                                       .+            .
T Consensus       485 gC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~  564 (735)
T KOG3626|consen  485 GCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVP  564 (735)
T ss_pred             cCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccc
Confidence                                                                             00            0


Q ss_pred             -------------------h---HHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhH-hhhhhhhhhHhHH
Q 013707          337 -------------------W---VPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGI-SSFANIVSPLIFS  392 (438)
Q Consensus       337 -------------------~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~-~~~g~~~g~~~~g  392 (438)
                                         .   .+++ .++..+..+...+..+.++.+.+|+|+|.-++|+..++ +-+|.+-+|.++|
T Consensus       565 ~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG  644 (735)
T KOG3626|consen  565 TNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFG  644 (735)
T ss_pred             cccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhh
Confidence                               0   0111 12223334444455666678889999999999998755 5778888999999


Q ss_pred             HHHHHH
Q 013707          393 PLTALF  398 (438)
Q Consensus       393 ~l~~~~  398 (438)
                      +++|..
T Consensus       645 ~~ID~t  650 (735)
T KOG3626|consen  645 AVIDTT  650 (735)
T ss_pred             hhHhhH
Confidence            999974

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.58  E-value=1.7e-11  Score=111.23  Aligned_cols=367  Identities=13%  Similarity=0.050  Sum_probs=232.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHH-HHHHHHHHHHHHHHhhhhcccccccCcchH
Q 013707            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLS-GFQQAIIGLGTLVMMPVIGNLSDQYGRKAM   83 (438)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~   83 (438)
                      +|++....+++-.|+..+  -=.-|.+.+|..+   +   +.+.+..++ .-+.-...-.++...++...+.|..+.|++
T Consensus         2 ~w~~~~~llc~~gf~~~f--rPsEPfl~~yL~~---~---~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpv   73 (412)
T PF01770_consen    2 SWKKITLLLCLFGFFKEF--RPSEPFLTPYLTG---P---DKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPV   73 (412)
T ss_pred             CchHHHHHHHHHHHHHhc--CCCCccchHHHcC---C---ccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            455555555554444332  2233444444432   1   122222222 223344455667777889999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhh
Q 013707           84 LTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (438)
Q Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l  163 (438)
                      ++++.+...+...+..+.++   ...+-+..+..|+ +.+. ..+.++++-...|+++-.++.+...++..+|..+|..+
T Consensus        74 iil~~~~~i~t~~lll~~~s---v~~mq~~q~~yg~-~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~l  148 (412)
T PF01770_consen   74 IILQALSYIITWLLLLFGTS---VLAMQLMQFFYGL-ATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLL  148 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHCc---HHHHHHHHHHHHH-HHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999   9999999999999 6444 56889999999999999999999999999999999888


Q ss_pred             hHHh------hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCC---cccchhccccccCCCCC-----CCCCcccc
Q 013707          164 ARFL------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLT---RPIITEETEGVNQNESN-----SPVKIPVC  229 (438)
Q Consensus       164 ~~~~------~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~  229 (438)
                      |..+      +.+...++......++ ++..+++|..++..--+++.   .+..+...+...+..++     ++..+...
T Consensus       149 gQllvs~~~~sy~~L~~isl~~~~~a-~~~~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (412)
T PF01770_consen  149 GQLLVSFGGVSYFQLNYISLASVSLA-LLIALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESS  227 (412)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHH-HHHHHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccc
Confidence            8764      4455656555443333 44456678765532111111   00000000000000000     00000111


Q ss_pred             ccCCchhHHHHh---hcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhH--cCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 013707          230 KKIPSIRDLICL---LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ--FHFNKNQFADLMLIAGLAGTISQLLFMP  304 (438)
Q Consensus       230 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (438)
                      .....++..++.   ..++|.++...+-..+...++..+.++.....++.  -+-+....|.+-+...+.+.++. +..|
T Consensus       228 ~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~a-l~~g  306 (412)
T PF01770_consen  228 SRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAA-LLAG  306 (412)
T ss_pred             hHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHH-HHHh
Confidence            111122222222   34677777777766666677777777766666554  23344445888888888888887 7778


Q ss_pred             HHHHhhchhh--HHHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhh
Q 013707          305 LLAPILGEAK--LLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISS  381 (438)
Q Consensus       305 ~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  381 (438)
                      .+..++.+..  .+....++.+..++++.+.++.|..+. -+++........+.....+.+...+|.-|-++|+++.+..
T Consensus       307 ~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al  386 (412)
T PF01770_consen  307 YVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVAL  386 (412)
T ss_pred             HhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHH
Confidence            8755555533  334445566677777888889998888 4566666777777777778888888888999998887765


Q ss_pred             hhhhh
Q 013707          382 FANIV  386 (438)
Q Consensus       382 ~g~~~  386 (438)
                      +-+.+
T Consensus       387 ~LQti  391 (412)
T PF01770_consen  387 VLQTI  391 (412)
T ss_pred             HHHHh
Confidence            54444

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.56  E-value=3.5e-13  Score=126.62  Aligned_cols=147  Identities=12%  Similarity=0.087  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 013707          249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMF  328 (438)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  328 (438)
                      +..+...++...+......+++.|+++++|+|+.+.|+..+...+...+.+ ++.|+++||+|+|+.+..+..+..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~-~~~G~l~dr~g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLG-IFGGAIADRFGAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH-hhhhHHHHHhCchHHHHHHHHHHHHHHH
Confidence            345567777778888889999999988899999999999999999988888 8889999999999999999999999999


Q ss_pred             HhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          329 ICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       329 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      .+.+.++.+.++. .++.+++.+...|...+++.+.+|+|+|+++.|+.+....+|..+||.++|.+.+
T Consensus        92 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~  160 (400)
T PRK11646         92 TMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ  160 (400)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888877766655 5677888888889999999999999999999999999999999999999999984

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.56  E-value=3e-13  Score=130.64  Aligned_cols=167  Identities=14%  Similarity=0.113  Sum_probs=114.8

Q ss_pred             HHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHH--
Q 013707           20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI--   97 (438)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~--   97 (438)
                      ...........+|.+.++       +.+.+....++..+...++..++.+..|+++||+|||+++..+.++..+....  
T Consensus       262 ~~~~~~~~~~~~p~~l~~-------~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  334 (490)
T PRK10642        262 TNVTYYMLLTYMPSYLSH-------NLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAF  334 (490)
T ss_pred             HHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            334444555667777653       22334445567777888999999999999999999999988877654433322  


Q ss_pred             -HHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh-----hHHH
Q 013707           98 -LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTS  171 (438)
Q Consensus        98 -~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-----~w~~  171 (438)
                       ...+++   ...+++.+++.|+ +.+........++.|.+|++.|+++++.......++..++|.+.+++     +|+.
T Consensus       335 ~~~~~~~---~~~~~~~~~~~g~-~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~  410 (490)
T PRK10642        335 ILINSNV---IGLIFAGLLMLAV-ILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMM  410 (490)
T ss_pred             HHHhCCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchH
Confidence             222344   6677788998888 66666667788899999999999999975444445556777776653     4677


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCC
Q 013707          172 AFQAATIVSMLAAAYMRVFLKDDVPND  198 (438)
Q Consensus       172 ~f~~~~~~~~i~~~~~~~~~~~~~~~~  198 (438)
                      +++...+.+++..+ ..+++||++++.
T Consensus       411 ~~~~~~~~~~i~~~-~~~~~pes~~~~  436 (490)
T PRK10642        411 PAYYLMVVAVIGLI-TGVTMKETANRP  436 (490)
T ss_pred             HHHHHHHHHHHHHH-HHHHhccccCCC
Confidence            77666665555443 445679988754

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.55  E-value=2.7e-13  Score=129.79  Aligned_cols=153  Identities=15%  Similarity=0.094  Sum_probs=134.3

Q ss_pred             ccchhHHHHHHHHHHHhhhchhhHHHHHHHHhH--cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhhHHHHHH
Q 013707          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ--FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSLGL  320 (438)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~  320 (438)
                      .++.++.+....++..+++++...++|.|+++.  +|+++.+.+.+.+.......++. +.+|+++|| +|||+++..+.
T Consensus         8 ~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~-~~~G~laDr~~G~~~~l~~~~   86 (475)
T TIGR00924         8 HPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLT-SVGWWFGDRVWGTKKTMVLGG   86 (475)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH-hhHHHHHHhhcchHHHHHHHH
Confidence            355667777778888899999999999999887  89999999999999999999998 888999999 89999999999


Q ss_pred             HHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCc---chhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          321 FAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNE---QGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      .+.+++.+++.+.++.+.... ..+.+++.+...|...+++.+.+|+++   |+++.++.....++|..+||.+.+++.+
T Consensus        87 ~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~  166 (475)
T TIGR00924        87 IVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE  166 (475)
T ss_pred             HHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888776555544 567788888888999999999998764   8889999999999999999999999987


Q ss_pred             H
Q 013707          397 L  397 (438)
Q Consensus       397 ~  397 (438)
                      +
T Consensus       167 ~  167 (475)
T TIGR00924       167 N  167 (475)
T ss_pred             h
Confidence            6

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.53  E-value=5.1e-13  Score=132.20  Aligned_cols=139  Identities=23%  Similarity=0.134  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHh
Q 013707           53 SGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY  132 (438)
Q Consensus        53 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~  132 (438)
                      ..+...+..++.+++.++.|+++||+|||++++.+.++.+++.++.++.++   ...+++.+++.|+ ..+...+...++
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s---~~~ll~~~~l~g~-~~~~~~~~~~a~  672 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNS---ESAMIALLCLFGG-LSIAAWNALDVL  672 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            345566778999999999999999999999999999999999999999888   6777788888888 667777889999


Q ss_pred             hhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh---hHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 013707          133 VADNISERQRASAFGILLGVLSASFVCGTLAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (438)
Q Consensus       133 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~---~w~~~f~~~~~~~~i~~~~~~~~~~~~~~  196 (438)
                      ++|++|.++|++++|+.++...+|.++||.+++.+   +...+|++.+++.++..++ ..++||+..
T Consensus       673 ~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll-~~~LPET~~  738 (742)
T TIGR01299       673 TVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLL-ALKLPDTRG  738 (742)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHhCCCCcc
Confidence            99999999999999999999999999999998764   3456777777766555444 446787653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.52  E-value=1.2e-12  Score=123.53  Aligned_cols=153  Identities=12%  Similarity=0.156  Sum_probs=126.2

Q ss_pred             ccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHHH
Q 013707          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-GEAKLLSLGLFA  322 (438)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~  322 (438)
                      +++.++..+...+...+.++++..++|.|+++.+|+++.+.+.+.........++. +.+|+++||+ |||+.+..+.++
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~-ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTP-ILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccCcHHHHHHHHHH
Confidence            35667777777788888999999999999999899999999999988888888877 8899999999 999999999999


Q ss_pred             HHHHHHHhHhccc-chHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCC--cchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          323 ACINMFICSISWS-AWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPN--EQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       323 ~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      ..++.+++....+ ...... ..+..++.+...+...+++.|.+|++  +|++++++.....++|+.++|.+.+++.+.
T Consensus        86 ~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~  164 (493)
T PRK15462         86 MAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE  164 (493)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9988877664332 222222 34445666666777888999999876  689999999999999999999999999875

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.52  E-value=5.5e-13  Score=126.14  Aligned_cols=170  Identities=19%  Similarity=0.250  Sum_probs=135.0

Q ss_pred             HHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHH
Q 013707           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (438)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~   97 (438)
                      +......+...+.++.+..+...    +.+......|.+.++..++..++.+..|+++||+|||+.+..+.....++.+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~  304 (408)
T PRK09874        229 LIIQVATGSIAPILTLYVRELAG----NVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIP  304 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence            34444555667778888775421    11112234577777888899999999999999999999999998888877777


Q ss_pred             HHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh----hHHHHH
Q 013707           98 LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAF  173 (438)
Q Consensus        98 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f  173 (438)
                      ..+.++   .+.+++.+++.|+ +.+...|...+++.|..|+++|++.++..+....+|..+||.+++.+    +|+..|
T Consensus       305 ~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f  380 (408)
T PRK09874        305 MSFVQT---PLQLGILRFLLGA-ADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVF  380 (408)
T ss_pred             HHHhcc---HHHHHHHHHHHHh-hhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHH
Confidence            777777   7888889999999 88888899999999999999999999999999999999999998874    899999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCC
Q 013707          174 QAATIVSMLAAAYMRVFLKDDV  195 (438)
Q Consensus       174 ~~~~~~~~i~~~~~~~~~~~~~  195 (438)
                      ++.+++.++..+...+..++++
T Consensus       381 ~~~~~~~l~~~~~~~~~~~~~~  402 (408)
T PRK09874        381 LVTAGVVLFNAVYSWNSLRRRR  402 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            9999888777666655554443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.50  E-value=1.6e-12  Score=123.76  Aligned_cols=148  Identities=11%  Similarity=0.120  Sum_probs=125.1

Q ss_pred             hHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 013707          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (438)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (438)
                      +...++..++..+........+|.+.++ +|+|+.+.+++.+...++..+++ +..|++.||+|+|+.+..+.++.+++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~g~r~~~~~~~~~~~~~~  102 (434)
T PRK11663         25 LITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSK-FVSGIVSDRSNARYFMGIGLIATGIIN  102 (434)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHH-hhhhHHHhhcCCchhHHHHHHHHHHHH
Confidence            3334444555555555667778888776 89999999999999999999998 888999999999999999999999999


Q ss_pred             HHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          328 FICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       328 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      ++..+.++.+.... .++.+++.+...+...+++.+.+|+++|+++.|+.+....+|..++|.+.+.+.+.
T Consensus       103 ~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~  173 (434)
T PRK11663        103 ILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH  173 (434)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            98888887776655 45667888888888999999999999999999999999999999999999998875

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.49  E-value=1.3e-12  Score=121.57  Aligned_cols=146  Identities=14%  Similarity=0.134  Sum_probs=126.4

Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHh
Q 013707          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFIC  330 (438)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  330 (438)
                      .....++..+........+|.|..+ .+.++.+.+++.+...++..++. +..|+++||+|||+.+..+..+..++....
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~-~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLS-PIAGALADRYDRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHH-HhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence            4556667777777788888998887 69999999999999999999998 888999999999999999988887777776


Q ss_pred             Hhcc-----cchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          331 SISW-----SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       331 ~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      .+..     +.+..+. ..+.+++.+...+...+++.|..|+++|+++.|..+....+|..++|.+.+.+.+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  155 (365)
T TIGR00900        82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL  155 (365)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6655     6565555 577788899999999999999999999999999999999999999999999998863

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.49  E-value=2.4e-13  Score=128.95  Aligned_cols=160  Identities=13%  Similarity=0.044  Sum_probs=128.0

Q ss_pred             hhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHH
Q 013707           29 PAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFY  108 (438)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~  108 (438)
                      ...|.+..+..    .+.+.+..+.|++.++..+...++.++.|+++||+|||+.+..+.++.+++..+.+++++   .+
T Consensus       244 ~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~---~~  316 (420)
T PRK09528        244 QQFPNFFASFF----ATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATG---PL  316 (420)
T ss_pred             HHHHHHHHHHH----hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhccc---HH
Confidence            34566655432    122344567799999999999999999999999999999999999999988888888888   78


Q ss_pred             HHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHH-HHHHHHhhhhhhHhhhHHh----hHHHHHHHHHHHHHHH
Q 013707          109 AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI-LLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLA  183 (438)
Q Consensus       109 ~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~i~  183 (438)
                      .++..+++.|+ +.+...+....++.|..|++.|+...+. .+....+|.++||.+.+++    ||+..|.+.+++.++.
T Consensus       317 ~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~  395 (420)
T PRK09528        317 EVSILKLLHAF-EVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLF  395 (420)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence            88889999998 7777777788999999999998877655 5667788899988888774    8999999988887766


Q ss_pred             HHHHHHhcccCCC
Q 013707          184 AAYMRVFLKDDVP  196 (438)
Q Consensus       184 ~~~~~~~~~~~~~  196 (438)
                      .++..+.++++++
T Consensus       396 ~~~~~~~~~~~~~  408 (420)
T PRK09528        396 TLISVFTLSGDRE  408 (420)
T ss_pred             HHHHHHHhcCCch
Confidence            6666666665544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.49  E-value=2.4e-12  Score=120.92  Aligned_cols=130  Identities=12%  Similarity=0.094  Sum_probs=114.1

Q ss_pred             hHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHH-HHH
Q 013707          266 QASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTA  344 (438)
Q Consensus       266 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  344 (438)
                      ...+|.+.+ ++|.|+.+.++..+...++..+++ +..|++.||+|||+.+..+..+..++.+...+.++.+...+ .++
T Consensus        29 ~~~~~~l~~-~~~~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~  106 (390)
T PRK03545         29 VGLLSDIAQ-SFHMQTAQVGLMLTIYAWVVALMS-LPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIG  106 (390)
T ss_pred             HcchHHHHh-HcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            334566554 589999999999999998988888 66789999999999999999999999999988888877766 467


Q ss_pred             HHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          345 FSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      .|++.+...+...+++.|..|+|+|+++.|+......+|..++|.+.+.+.++
T Consensus       107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~  159 (390)
T PRK03545        107 IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY  159 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            78888888889999999999999999999999999999999999999998876

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.49  E-value=2.1e-12  Score=121.19  Aligned_cols=144  Identities=13%  Similarity=0.071  Sum_probs=122.2

Q ss_pred             HHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhH
Q 013707          252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICS  331 (438)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  331 (438)
                      .+..+.............|.+.++ +|.++.+.+++.+...++..+++ ++.|++.||+|||+.+..+..+..++.+...
T Consensus        11 ~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   88 (385)
T TIGR00710        11 GCLSILGPLGIDMYLPAFPEIAAD-LSTPASIVQMTLTLYLLGFAAGQ-LLWGPLSDRYGRRPVLLLGLFIFALSSLGLA   88 (385)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            333344444445555566666555 89999999999999999999998 8889999999999999999999999998888


Q ss_pred             hcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          332 ISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       332 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      +.++.+.... .++.+++.+...+...+++.|.+|+++|+++.|..+....+|..++|.+.+.+.++
T Consensus        89 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  155 (385)
T TIGR00710        89 LSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW  155 (385)
T ss_pred             HHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877776665 57788889999999999999999999999999999999999999999999988876

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.48  E-value=1.4e-12  Score=120.58  Aligned_cols=145  Identities=19%  Similarity=0.313  Sum_probs=122.5

Q ss_pred             HHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhH
Q 013707          252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICS  331 (438)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  331 (438)
                      ++..++..+........+|.++.+++|.++.+.+++.+...++..+++ +..|+++||+|||+.+..+..+.+++.+...
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFS-PFAGYLSDRFGRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHH-HHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCeeeEeehhhhhhhHHHHhh
Confidence            345556666666677777867777799999999999999999999998 8889999999999999999999999855555


Q ss_pred             hcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          332 ISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       332 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      +.++.+.... .++.|++.+...+...+++.|.+|+|+|+++.+..+....+|..++|.+.+.+.+.
T Consensus        81 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~  147 (352)
T PF07690_consen   81 FASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY  147 (352)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred             hhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc
Confidence            5566664444 57889999999999999999999999999999999999999999999999998865

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.47  E-value=1.9e-12  Score=121.35  Aligned_cols=149  Identities=15%  Similarity=0.155  Sum_probs=124.9

Q ss_pred             cchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 013707          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (438)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  324 (438)
                      +|.++...+..++..+.........+...++ ++.++.+.+++.+...+...+.. ++.|+++||+|||+++..+..+.+
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~l~~~l~~-~~~G~laDr~grr~vl~~~~~~~~   79 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIALLKE-LHYPDWSQPLLQMFFVLAYIVLA-PFVGAFADSFPKGRVMFIANGIKL   79 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHH-hhhhHhhhccCCchhhHHHHHHHH
Confidence            3556677777777777666666666666544 78899999999999999999988 888999999999999999999888


Q ss_pred             HHHHHhHhcccchHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          325 INMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      ++.+.+.+..+.  ...-++.|++.+...|...+++.|.+|+|+|++++|+.+....++..+||.++|.+.+.
T Consensus        80 ~~~~~~~~~~~~--~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~  150 (393)
T PRK11195         80 LGCLLMLFGIHP--LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP  150 (393)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877766555443  23346789999999999999999999999999999999999999999999999999986

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.47  E-value=6.2e-12  Score=117.99  Aligned_cols=132  Identities=13%  Similarity=0.061  Sum_probs=117.5

Q ss_pred             hhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHH-H
Q 013707          264 GMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-T  342 (438)
Q Consensus       264 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  342 (438)
                      .....+|.+.++ +|+++.+.+...+...++..+++ +..+++.||+|||+.+..+.++.+++.+...+.++.+..+. .
T Consensus        38 ~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  115 (394)
T PRK10213         38 LPVSLLTPMAQD-LGISEGVAGQSVTVTAFVAMFAS-LFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGR  115 (394)
T ss_pred             HHHhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHH
Confidence            344456776655 89999999999999999999988 78889999999999999999999999888888877777776 5


Q ss_pred             HHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          343 TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      .+.|++.+...+...+++.|.+|+++|+++.+......++|..++|.+.+.+.+.
T Consensus       116 ~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~  170 (394)
T PRK10213        116 ACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL  170 (394)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7889999999999999999999999999999999999999999999999999876

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.47  E-value=3.7e-12  Score=119.19  Aligned_cols=151  Identities=9%  Similarity=0.005  Sum_probs=133.4

Q ss_pred             cchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 013707          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (438)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  324 (438)
                      ++.++...+..++...........+|.|.++ +|.|+.+.|++.+...++..+++ +..|+++||+|+|+.+..+..+.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~G~~~s~~~l~~~~~~-~~~g~l~dr~g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ-EHLPTWQVGVVSSSYFTGNLVGT-LLAGYVIKRIGFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457777888888888888899999999987 69999999999999999999998 888999999999999999999999


Q ss_pred             HHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          325 INMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       325 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      ++.....+.++.+.+.+ .++.|++.+...|...+...+..++++|+++.|..+....+|..+||.+.+.+.+.
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633         83 AGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            99988888888776666 57778888888888888888888999999999999999999999999999988664

>PRK10504 putative transporter; Provisional

Probab=99.46  E-value=4.4e-12  Score=122.30  Aligned_cols=150  Identities=13%  Similarity=0.041  Sum_probs=130.2

Q ss_pred             chhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 013707          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (438)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (438)
                      +.++...+..++...........+|.+.++ +|.++.+.++..+...++..++. ++.|+++||+|||+.+..+..+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~r~~~~~~~~~~~~   87 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVML-PASGWLADRVGVRNIFFTAIVLFTL   87 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhchHHHHHHHHHHHHH
Confidence            346666777777777777888889999877 89999999999988888888888 8889999999999999998888888


Q ss_pred             HHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          326 NMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       326 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      +.+...+.++.+..+. .++.|++.+...|...+.+.|.+|+++|+++.|..+....+|..++|.+.|.+.++
T Consensus        88 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~  160 (471)
T PRK10504         88 GSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY  160 (471)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence            8887777777666555 57889999999999999999999999999999999999999999999999999885

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.46  E-value=4.4e-12  Score=119.56  Aligned_cols=162  Identities=17%  Similarity=0.132  Sum_probs=125.0

Q ss_pred             HHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHH
Q 013707           20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA   99 (438)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~   99 (438)
                      ..++.+...+.+|.+..+.        +.  ...++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.....
T Consensus       228 ~~~~~~~~~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~  297 (399)
T PRK05122        228 ASIGFGTIATFITLYYAAR--------GW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLW  297 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHc--------cc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            3444555556666665532        11  1235556777888899999999999999999999998888888888888


Q ss_pred             hcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh----hHHHHHHH
Q 013707          100 YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQA  175 (438)
Q Consensus       100 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~  175 (438)
                      +.++   .+.+++.+++.|+ +.+...+.....+.|..|+++|+++.++++....+|..++|.+.+.+    ||+..|++
T Consensus       298 ~~~~---~~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  373 (399)
T PRK05122        298 LAPS---PWMALIGAALTGF-GFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLA  373 (399)
T ss_pred             Hhcc---HHHHHHHHHHHHH-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            8777   7777888999999 77777788888888999999999999999999999988887777664    78999998


Q ss_pred             HHHHHHHHHHHHHHhcccCCC
Q 013707          176 ATIVSMLAAAYMRVFLKDDVP  196 (438)
Q Consensus       176 ~~~~~~i~~~~~~~~~~~~~~  196 (438)
                      .+.+.++..+... .++++++
T Consensus       374 ~~~~~~~~~~~~~-~~~~~~~  393 (399)
T PRK05122        374 AALAALLGLALTW-LLYRRAP  393 (399)
T ss_pred             HHHHHHHHHHHHH-Hhccccc
Confidence            8887766655544 3444433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.46  E-value=8.5e-12  Score=120.27  Aligned_cols=155  Identities=14%  Similarity=0.070  Sum_probs=125.3

Q ss_pred             cccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHH
Q 013707          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSLGLF  321 (438)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~  321 (438)
                      ++++.++..+...++..+.++....+++.|+++.+|+++.+.+.............. ++.|+++|| +|+|+.+..+..
T Consensus        18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~-~~~G~LaDr~~G~r~~~~~g~~   96 (500)
T PRK09584         18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLV-AIGGWLGDKVLGTKRVIMLGAI   96 (500)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchHHHHHHHHH
Confidence            345568888888888889999999999999999999999998877776554444444 678999999 599999999999


Q ss_pred             HHHHHHHHhHhcccc-hHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCc--chhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          322 AACINMFICSISWSA-WVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNE--QGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       322 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      +..++..++.+.++. +..++ ..+.+++.+...+...+++.+.+|+++  ++.+.++.+...++|..+||.+.|++.+.
T Consensus        97 ~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~  176 (500)
T PRK09584         97 VLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK  176 (500)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999998888776443 33333 466788888888888899999998654  45688888999999999999999999886


Q ss_pred             H
Q 013707          398 F  398 (438)
Q Consensus       398 ~  398 (438)
                      .
T Consensus       177 ~  177 (500)
T PRK09584        177 Y  177 (500)
T ss_pred             h
Confidence            3

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.46  E-value=3.6e-10  Score=104.56  Aligned_cols=368  Identities=13%  Similarity=0.079  Sum_probs=205.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHH
Q 013707            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (438)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (438)
                      |..+.++...+++..+.-+---..|.++.+..+ +  .+    ...+...-...+..++.++..|.+.||..|+++...+
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p-~--sL----l~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~   74 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFP-G--SL----LPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTS   74 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C--Cc----HHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHH
Confidence            455668888999999988888888888876421 1  11    1223333344677788999999999999999998877


Q ss_pred             HHHHHHHHHHH----H--hcc-c-----chhHHHHHHHHHhhhhcchhhHh-hhhhHhhhccC------CccchhHHHHH
Q 013707           88 LTLSIIPLAIL----A--YRR-S-----ISFFYAYYALRTLTAMVCEGSIN-CLALAYVADNI------SERQRASAFGI  148 (438)
Q Consensus        88 ~~~~~~~~~~~----~--~~~-~-----~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~i~~~~------~~~~r~~~~~~  148 (438)
                      .+..-++..+.    .  +.. +     ......+++.-.+.|. -+-... ....+.=.||.      +++++.+.++.
T Consensus        75 l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~-i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~  153 (432)
T PF06963_consen   75 LVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGA-IERLASIANTIAVERDWVVVIAGGDPGALARMNAT  153 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHH-HHHHHHhhhhheeccchhhhhcCCChhhHHHHHHH
Confidence            66443332222    1  111 1     1112222333233332 111111 11222224453      34456667777


Q ss_pred             HHHHHHhhhhhhHhhhHHh----hHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCCCCCCCCcccchhccccccCCCC
Q 013707          149 LLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLK----DDVPNDDDDDLTRPIITEETEGVNQNES  220 (438)
Q Consensus       149 ~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (438)
                      +.-.-.+..+++|++.+.+    +.+....+.+...++....=++++.    ..|+-+.++++ ++......++  +..+
T Consensus       154 mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~-~~~~~~~~~~--~~~~  230 (432)
T PF06963_consen  154 MRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRS-SESESSSDEE--SSSE  230 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCC-cccccccccc--cccc
Confidence            7777778888999888774    4555555555555554433222221    12211111100 0000000000  0000


Q ss_pred             CCCCCccccccC---CchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHH
Q 013707          221 NSPVKIPVCKKI---PSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTI  297 (438)
Q Consensus       221 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  297 (438)
                      +........+..   ...++.++...+.+.+...+...+++ +..-++......|+..+ |+++..+|..-+...+.++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY-~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~  308 (432)
T PF06963_consen  231 SSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLY-FTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLL  308 (432)
T ss_pred             ccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHH-HHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH
Confidence            000000000000   11122234455566555444444444 44555677888899886 99999999999999999999


Q ss_pred             HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH----hHhcccc--hHHHHH-----HHHHhhhhhhHHHHHHHHhhcCCC
Q 013707          298 SQLLFMPLLAPILGEAKLLSLGLFAACINMFI----CSISWSA--WVPYAT-----TAFSVLVVFATPSFRSIVSKQVGP  366 (438)
Q Consensus       298 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  366 (438)
                      +. +..+++.+|+|..+.-.++......++.+    +....+.  ..-...     ++-=+|.=..-....-+++|.+|+
T Consensus       309 gT-~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~  387 (432)
T PF06963_consen  309 GT-WVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPE  387 (432)
T ss_pred             HH-HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH
Confidence            98 88899999999888766666544433322    2222222  111111     222244444556777888999999


Q ss_pred             CcchhHHHHHhhHhhhhhhhhhH
Q 013707          367 NEQGKAQGCISGISSFANIVSPL  389 (438)
Q Consensus       367 ~~~g~~~g~~~~~~~~g~~~g~~  389 (438)
                      ++||+..|.-+..+++...+.-.
T Consensus       388 ~~Rg~v~gvq~sl~~lf~ll~~~  410 (432)
T PF06963_consen  388 SERGAVSGVQNSLQSLFELLSFV  410 (432)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999877766543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.46  E-value=6.9e-12  Score=118.38  Aligned_cols=141  Identities=10%  Similarity=-0.013  Sum_probs=120.1

Q ss_pred             HHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhc
Q 013707          254 VAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS  333 (438)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (438)
                      ..++............| .+++++|+++.+.++..+...++..+++ +..|++.||+|||+.+..+.++..++.+...+.
T Consensus        16 ~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~   93 (412)
T TIGR02332        16 LFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICG-IPSNIMLAIIGARRWIAGIMVLWGIASTATMFA   93 (412)
T ss_pred             HHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHH-hhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence            33333333444444444 6667799999999999999999999999 777899999999999999999999999999888


Q ss_pred             ccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          334 WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       334 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      ++.+.++. -++.|++.+...|....++.|.+|+++|+++.|+.+....+|..+++.+.+++.+
T Consensus        94 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  157 (412)
T TIGR02332        94 TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA  157 (412)
T ss_pred             cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88776666 5788999999899999999999999999999999999999999999999998875

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.46  E-value=5.1e-12  Score=118.25  Aligned_cols=150  Identities=12%  Similarity=0.029  Sum_probs=130.6

Q ss_pred             chhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 013707          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (438)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (438)
                      +.++......+............+|.+.++ +|.+..+.++..+...++..+++ +..|++.||+|||+.+..+..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYALGVVVGA-PIIALFSSRYSLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHHHHHHHH-HHHHHHHccCccHHHHHHHHHHHHH
Confidence            445666677777777777777888877665 89999999999999999999998 8889999999999999999999999


Q ss_pred             HHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          326 NMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       326 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      +.++..+.++.+.+++ .++.|++.+...+.....+.+..|+++|+++.+.......++..++|.+.+.+.+.
T Consensus        81 ~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~  153 (382)
T PRK10091         81 GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE  153 (382)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh
Confidence            9999999888887776 57788888888888888899999999999999999999999999999999988775

>PRK12382 putative transporter; Provisional

Probab=99.45  E-value=5.5e-12  Score=118.59  Aligned_cols=152  Identities=14%  Similarity=0.060  Sum_probs=122.7

Q ss_pred             cchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 013707          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (438)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  324 (438)
                      ++.++...+..++...........+|.|+++++|.|+.+.|.+.+...+...+.+ +..|+++||+|||+.+..+.+...
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~-~~~G~l~Dr~g~r~~l~~~~~~~~   92 (392)
T PRK12382         14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTR-GYAGRLADQYGAKRSALQGMLACG   92 (392)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHh-hhhhHHHHhhcchHHHHHHHHHHH
Confidence            3445666666667767777778888989888899999999999999999999999 888999999999999998887766


Q ss_pred             HHHHHh---Hhc-----ccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHH
Q 013707          325 INMFIC---SIS-----WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  395 (438)
Q Consensus       325 ~~~~~~---~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  395 (438)
                      ++.+..   ...     .+.+.+++ -.+.|++.+...+...+++.+..|+|+|+++.|..+.....+..++|.+.+.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~  172 (392)
T PRK12382         93 LAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH  172 (392)
T ss_pred             HHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            554322   221     12333333 467788888888888889999999999999999999999999999999999887


Q ss_pred             HH
Q 013707          396 AL  397 (438)
Q Consensus       396 ~~  397 (438)
                      +.
T Consensus       173 ~~  174 (392)
T PRK12382        173 SH  174 (392)
T ss_pred             hc
Confidence            75

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.45  E-value=5.1e-12  Score=121.16  Aligned_cols=154  Identities=14%  Similarity=0.063  Sum_probs=131.8

Q ss_pred             ccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHH
Q 013707          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSLGLFA  322 (438)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~  322 (438)
                      ++|.++..+...+...+++++...+++.|+++.+|++..+.+++.........+.. +++|+++|| +|||+++..+.++
T Consensus        12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~-~~~G~laDr~~G~r~~~~~g~~~   90 (489)
T PRK10207         12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLI-SIGGYVGDHLLGTKRTIVLGAIV   90 (489)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-hhHHHhhhhccchHHHHHHHHHH
Confidence            35667777778888889999999999999999999999999888888777777766 788999999 9999999999999


Q ss_pred             HHHHHHHhHhcccchHHH-H-HHHHHhhhhhhHHHHHHHHhhcCCCCc--chhHHHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          323 ACINMFICSISWSAWVPY-A-TTAFSVLVVFATPSFRSIVSKQVGPNE--QGKAQGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      ..++.+.+.+..+....+ . ..+.+++.+...|...+++.|.+|+++  |++++++.....++|..+||.+.|++.++.
T Consensus        91 ~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~  170 (489)
T PRK10207         91 LAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF  170 (489)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999998888876544322 3 566788889899999999999998874  578999999999999999999999998864

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.45  E-value=1.3e-11  Score=111.56  Aligned_cols=176  Identities=15%  Similarity=0.091  Sum_probs=154.1

Q ss_pred             chhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 013707          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (438)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (438)
                      ..++.+.+..|.....++.....+|...+| +|.|..+.|...+.++.+..++. +....+.||+.||+++...+.+..+
T Consensus        13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~d-l~vs~~~aG~lis~yAl~~ai~a-p~l~~lt~r~~Rr~lLl~~l~lFi~   90 (394)
T COG2814          13 LALLALALAAFAIGTTEFVPVGLLPPIAAD-LGVSEGAAGQLITAYALGVALGA-PLLALLTGRLERRRLLLGLLALFIV   90 (394)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhchHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcccchHHHHHHHHHHHHH
Confidence            346667788888888888899999999988 89999999999999999999999 6667999999999999999999999


Q ss_pred             HHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCC
Q 013707          326 NMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAP  404 (438)
Q Consensus       326 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~  404 (438)
                      +.++..++++.+.+.+ -++.++..+..++...+...+.+|+++|+++.++..+...++..+|.+++.++-|.++     
T Consensus        91 ~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G-----  165 (394)
T COG2814          91 SNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-----  165 (394)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh-----
Confidence            9999999999998887 5889999999999999999999999999999999999999999999999999998753     


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHhhhh
Q 013707          405 FNFPGFSIMCIGLASVRAFTYELLLSF  431 (438)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (438)
                        | ...|.+.+.+.++.....+...|
T Consensus       166 --W-R~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         166 --W-RATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             --H-HHHHHHHHHHHHHHHHHHHHhCC
Confidence              2 34556666666666666555544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.43  E-value=5.4e-12  Score=119.24  Aligned_cols=155  Identities=19%  Similarity=0.147  Sum_probs=119.6

Q ss_pred             hhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcc
Q 013707           23 ATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR  102 (438)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~  102 (438)
                      .........|.+.++        .+.+..+.+...+...++..++.++.|+++||+|||+.+..+.+...++.....+.+
T Consensus       235 ~~~~~~~~~p~~~~~--------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~  306 (406)
T PRK11551        235 VLYFLLNWLPSLLVG--------QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAP  306 (406)
T ss_pred             HHHHHHHHHHHHHHh--------CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            333334445666553        355556778899999999999999999999999999999887777777766666777


Q ss_pred             cchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh-----hHHHHHHHHH
Q 013707          103 SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAAT  177 (438)
Q Consensus       103 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-----~w~~~f~~~~  177 (438)
                      +   .+.+.+..++.|+ +.+...+...+++.|.+|+++|++..|+.+....+|..+||.+++.+     +|...++...
T Consensus       307 ~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~  382 (406)
T PRK11551        307 S---FAGMLLAGFAAGL-FVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASI  382 (406)
T ss_pred             c---HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHH
Confidence            7   6667777788888 66667788899999999999999999999999999999999999875     4556666665


Q ss_pred             HHHHHHHHHHHH
Q 013707          178 IVSMLAAAYMRV  189 (438)
Q Consensus       178 ~~~~i~~~~~~~  189 (438)
                      ...++..+..+.
T Consensus       383 ~~~~~~~~~~~~  394 (406)
T PRK11551        383 PVILVAALAALL  394 (406)
T ss_pred             HHHHHHHHHHHH
Confidence            555444444333

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.43  E-value=7.2e-12  Score=117.71  Aligned_cols=159  Identities=14%  Similarity=0.151  Sum_probs=118.9

Q ss_pred             hhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhc
Q 013707           22 FATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR  101 (438)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~  101 (438)
                      ..........|.+.++       +.+.+..+.|++.+...+...++.++.|+++||+|||+.+..+.....+........
T Consensus       230 ~~~~~~~~~~p~~l~~-------~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  302 (393)
T PRK15011        230 GTNSLYIINMPLFIIN-------ELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA  302 (393)
T ss_pred             HHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445567777654       345556677888777778888899999999999999998887776665555555556


Q ss_pred             ccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH----hhHHHHHHHHH
Q 013707          102 RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAAT  177 (438)
Q Consensus       102 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f~~~~  177 (438)
                      ++   .+.+++.+++.++ +.+...+....+..|..|+ +|+++.+..+...++|..+||.+++.    ++|+..|++.+
T Consensus       303 ~~---~~~~l~~~~l~~~-~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~  377 (393)
T PRK15011        303 HS---PAILLGLQLLNAI-YIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFAL  377 (393)
T ss_pred             hh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            66   6777788888887 6676666777888998884 68999999988889999999988877    48999999887


Q ss_pred             HHHHHHHHHHHHhccc
Q 013707          178 IVSMLAAAYMRVFLKD  193 (438)
Q Consensus       178 ~~~~i~~~~~~~~~~~  193 (438)
                      ++.++..+ ..++.||
T Consensus       378 ~~~~~~~~-~~~~~~~  392 (393)
T PRK15011        378 VMIIATLF-CLLRIKD  392 (393)
T ss_pred             HHHHHHHH-HHHhhcC
Confidence            77665543 4445554

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.42  E-value=1.3e-11  Score=119.32  Aligned_cols=149  Identities=16%  Similarity=0.079  Sum_probs=127.6

Q ss_pred             hhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 013707          247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACIN  326 (438)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  326 (438)
                      .+....+..++...-.......+|.+.++ +|.++.+.++..+.+.++..... +..|+++||+|||+.+..+..+..++
T Consensus         7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~-~~~G~l~D~~Grk~~l~~~~~~~~~~   84 (495)
T PRK14995          7 TLVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMV-LPMGALGDRIGFKRLLMLGGTLFGLA   84 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34455566666666666777788888766 79999999999999999988888 78899999999999999999999999


Q ss_pred             HHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcC-CCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          327 MFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQV-GPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       327 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      .+..++.++.+.+++ -.+.|++.+...|.....+.+.+ |+++|+++.|+......+|..+||.++|.+.++
T Consensus        85 ~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~  157 (495)
T PRK14995         85 SLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH  157 (495)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999988887776 47889988888888877776655 678999999999999999999999999999886

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.42  E-value=1.3e-12  Score=124.87  Aligned_cols=164  Identities=14%  Similarity=0.138  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhccccccc--CcchHhHH-
Q 013707           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY--GRKAMLTL-   86 (438)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~--Grk~~l~~-   86 (438)
                      ++......++..++.......+|.|.++        .+.+..+.|++.++..++..+++++.|+++||.  ++|+...+ 
T Consensus       243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  314 (455)
T TIGR00892       243 FLVYLSGNVIMFLGFFAPIIFLVPYAKD--------KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFS  314 (455)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHH
Confidence            4444455555555555555667777653        355667789999999999999999999999984  34443333 


Q ss_pred             -HHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhH
Q 013707           87 -PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (438)
Q Consensus        87 -~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~  165 (438)
                       +....+++.++....++   ++.+++.+++.|+ +.+...+...+++.|.+|++++++.+++++...++|..+||.+++
T Consensus       315 ~~~~~~~l~~ll~~~~~~---~~~~~i~~~~~G~-~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G  390 (455)
T TIGR00892       315 FALLFNGLTHLLCALAGD---YTGLVIYCIFFGL-SFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAG  390 (455)
T ss_pred             HHHHHHHHHHHHHHHhch---HHHHHHHHHHHHH-HhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHcccccee
Confidence             33444455555666777   7888889999999 888888889999999999999999999999999999999999988


Q ss_pred             Hh-----hHHHHHHHHHHHHHHHHH
Q 013707          166 FL-----STTSAFQAATIVSMLAAA  185 (438)
Q Consensus       166 ~~-----~w~~~f~~~~~~~~i~~~  185 (438)
                      .+     +|+..|++.+++.++..+
T Consensus       391 ~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       391 RLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             eeehhcCCcchHHHHhhHHHHHHHH
Confidence            63     588999988877655543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.42  E-value=1e-11  Score=117.74  Aligned_cols=160  Identities=10%  Similarity=0.026  Sum_probs=128.5

Q ss_pred             hhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchh
Q 013707           27 VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISF  106 (438)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~  106 (438)
                      ....+|.+.++       ..+.+....|++.+...++..++.++.|++.||.++++.+..+.++.+++.++..+.++   
T Consensus       242 ~~~~~p~~~~~-------~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---  311 (417)
T PRK10489        242 VRVLYPALADE-------VWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPM---  311 (417)
T ss_pred             HHHhhHHHHHh-------ccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccch---
Confidence            34456777653       24555677899999999999999999999999988888888888888888877777777   


Q ss_pred             HHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh----hHHHHHHHHHHHHHH
Q 013707          107 FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSML  182 (438)
Q Consensus       107 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~i  182 (438)
                      .+...+..++.|+ +.+...+...+++.|..|+++|++++|+......+|..+||.+.+.+    |.+..++..+...++
T Consensus       312 ~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~  390 (417)
T PRK10489        312 WILAVLCLALFGY-LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLI  390 (417)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence            7777788888898 77777777889999999999999999999999999999999888774    667778777776666


Q ss_pred             HHHHHHHhcccCCCC
Q 013707          183 AAAYMRVFLKDDVPN  197 (438)
Q Consensus       183 ~~~~~~~~~~~~~~~  197 (438)
                      ..++....+||.++.
T Consensus       391 ~~~~~~~~~~~~~~~  405 (417)
T PRK10489        391 IGVLLLLVLGELRRF  405 (417)
T ss_pred             HHHHHHHhccccccc
Confidence            666666667776543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.42  E-value=4.7e-12  Score=117.02  Aligned_cols=167  Identities=23%  Similarity=0.236  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcch-HhHHH
Q 013707            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA-MLTLP   87 (438)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~-~l~~~   87 (438)
                      .++...+..+.............|.+.++.       .+.+..+.++..+...++..++.++.|++.||+|||+ .+..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  248 (352)
T cd06174         176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEV-------LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIG  248 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            344445555566666677777778777642       2455677899999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh
Q 013707           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (438)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~  167 (438)
                      ..+..++.+.....++   .+...+..++.|+ +.+...+...+++.|..|+++|++.++..+...++|..++|.+.+.+
T Consensus       249 ~~~~~i~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l  324 (352)
T cd06174         249 LLLAALGLLLLALAPS---LALLLVALLLLGF-GLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL  324 (352)
T ss_pred             HHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888   8888999999999 88888999999999999999999999999999999999999998874


Q ss_pred             ----hHHHHHHHHHHHHHHHHHH
Q 013707          168 ----STTSAFQAATIVSMLAAAY  186 (438)
Q Consensus       168 ----~w~~~f~~~~~~~~i~~~~  186 (438)
                          +|+..+++.+++.++..+.
T Consensus       325 ~~~~~~~~~~~~~~~~~~i~~i~  347 (352)
T cd06174         325 LDTGGYGGVFLILAALALLAALL  347 (352)
T ss_pred             hcccCcchHHHHHHHHHHHHHHH
Confidence                7899999998887666544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.42  E-value=8.8e-12  Score=120.76  Aligned_cols=146  Identities=14%  Similarity=0.064  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 013707          250 QAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFI  329 (438)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  329 (438)
                      .+.+..++............|.+.++ +|.++.+.+++.+...++..++. +..|+++||+|||+.+..+..+..++.+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   83 (485)
T TIGR00711         6 VLMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISI-PLTGWLAKRFGTRRLFLISTFAFTLGSLL   83 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHH-HhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            34455555555556666777777766 89999999999999999999988 88899999999999999999999999999


Q ss_pred             hHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          330 CSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       330 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      ....++.+..+. .++.|++.+...+...+++.|.+|+++|+++.++......+|..++|.+.+.+.++
T Consensus        84 ~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  152 (485)
T TIGR00711        84 CGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN  152 (485)
T ss_pred             HhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC
Confidence            988888776666 57788999999999999999999999999999999999999999999999998775

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.41  E-value=2.5e-11  Score=112.98  Aligned_cols=149  Identities=17%  Similarity=0.153  Sum_probs=123.7

Q ss_pred             hHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 013707          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (438)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (438)
                      ++......+...........+.|.++++++|+|+.+.+++.+...++..++. +..|+++||+|+|+.+..+.++..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLR-IILGFLVDKFGPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            4445555666666667778888877878899999999999999999999998 888999999999999999999999999


Q ss_pred             HHhHhcc-cchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          328 FICSISW-SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       328 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      +...+.+ +.+..+. .++.|++.+. .+....++.+.+|+++|+++.++.....++|..+++.+.+.+.+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  153 (366)
T TIGR00886        82 LWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSL  153 (366)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            9888887 7666655 4666776543 4556788999999999999999999899999999998888877653

>PRK03699 putative transporter; Provisional

Probab=99.41  E-value=1.8e-11  Score=115.01  Aligned_cols=148  Identities=12%  Similarity=0.024  Sum_probs=121.6

Q ss_pred             hHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 013707          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (438)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (438)
                      .+...+..++...........+|.+.++ +|+|+.+.+...+...++..+++ +..|++.||+|+|+.+..+..+..++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~i~~-~~~g~l~dr~g~r~~~~~~~~~~~i~~   86 (394)
T PRK03699          9 TWISFLSYALTGALVIVTGMVMGPIAEY-FNLPVSSMSNTFTFLNAGILISI-FLNAWLMEIIPLKRQLIFGFALMILAV   86 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            4444455555555555566667776654 89999999999999999999988 888999999999999999999999988


Q ss_pred             HHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          328 FICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       328 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      ++..+.++.+.... ..+.+++.+...+...+.+.|..|+++|++..+..+....++..++|.+.+.+.+.
T Consensus        87 ~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  157 (394)
T PRK03699         87 AGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR  157 (394)
T ss_pred             HHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88888877766555 56778888888888888999999999999999998888899999999998887654

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.40  E-value=1.8e-11  Score=115.69  Aligned_cols=148  Identities=11%  Similarity=0.064  Sum_probs=125.5

Q ss_pred             hHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 013707          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (438)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (438)
                      +....+..+...+.........|.+. +++|.++.+.+++.+...++..+++ +..|+++||+|||+.+..+.++.+++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~s~~~~g~~~~~~~~~~~~~~-~~~G~l~Dr~g~r~~~~~~~~~~~~~~   91 (405)
T TIGR00891        14 FSAAWLGWLLDAFDFFLVALVLAEVA-GEFGLTTVDAASLISAALISRWFGA-LMFGLWGDRYGRRLPMVTSIVLFSAGT   91 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            44445555555555555566666554 5589999999999999999999998 888999999999999999999999998


Q ss_pred             HHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          328 FICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       328 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      +...+.++.+..+. .++.|++.+...+...+++.|..|+++|+++.++.+....+|..+++.+.+.+.+.
T Consensus        92 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~  162 (405)
T TIGR00891        92 LACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV  162 (405)
T ss_pred             HHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888887776665 57788898999999999999999999999999999999999999999999988775

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.40  E-value=8.9e-12  Score=121.05  Aligned_cols=144  Identities=14%  Similarity=0.106  Sum_probs=106.4

Q ss_pred             hhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchh
Q 013707           27 VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISF  106 (438)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~  106 (438)
                      ....+|.+.++       +.+.+..+.|++.+...++..++.++.|+++||+|||+++..+..+..+..+......+.. 
T Consensus       294 ~~~~lp~~l~~-------~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~-  365 (496)
T PRK03893        294 IQALLPTYLKT-------DLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGAN-  365 (496)
T ss_pred             HHHHHHHHHHh-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccH-
Confidence            34567777643       4466677889999999999999999999999999999999888776666655444333211 


Q ss_pred             HHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh----hHHHHHHHHHHH
Q 013707          107 FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIV  179 (438)
Q Consensus       107 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~  179 (438)
                      .+......++.+. ......+...+++.|.+|+++|++.+++......+|..+||.+++.+    ||+..+...+..
T Consensus       366 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        366 VWVLGLLLFFQQM-LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS  441 (496)
T ss_pred             HHHHHHHHHHHHH-HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            3444445555444 22233456778899999999999999999999999999999988874    677777655443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.40  E-value=2.4e-11  Score=114.29  Aligned_cols=150  Identities=11%  Similarity=0.051  Sum_probs=124.6

Q ss_pred             chhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 013707          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (438)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (438)
                      |.+.......+....+.......+|.+.++ +|.++.+.++..+...++..++. +..|+++||+|||+.+..+.....+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~-~~~G~l~Dr~g~r~~l~~~~~~~~i   80 (392)
T PRK10473          3 RFLLCSFALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAM-LFAGKIADRSGRKPVAIPGAALFII   80 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HhHhHHHHHhCChHHHHHHHHHHHH
Confidence            444555555555556666666677777766 79999999999999999988988 8889999999999999999999999


Q ss_pred             HHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          326 NMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       326 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      +.......++.+.... ..+.+++.+...+...+++.|.+|+++|+++.+..+....++..++|.+.+.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~  153 (392)
T PRK10473         81 ASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK  153 (392)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9888888777665555 56778888888888999999999999999999999999999999999998877654

>PRK11043 putative transporter; Provisional

Probab=99.39  E-value=3e-11  Score=113.92  Aligned_cols=144  Identities=15%  Similarity=0.067  Sum_probs=117.0

Q ss_pred             HHHHHHHhhhchhhHHHHHH--HHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHh
Q 013707          253 VVAFFSGLSEGGMQASFLYF--LKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFIC  330 (438)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  330 (438)
                      ...++....+.....+.|.+  .++++|.++.+.++..+...++..++. +..|+++||+|||+.+..+..+..++.+..
T Consensus        10 ~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   88 (401)
T PRK11043         10 YLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQ-LLWGPLSDRYGRKPVLLAGLSLFALGSLGM   88 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HhhhhHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence            33333334444445555544  455689999999999999999999998 888999999999999999998888888888


Q ss_pred             HhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          331 SISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       331 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      .+.++.+...+ ..+.|++.+...+...+.+.|.+|++++++..+..+....++..++|.+.+.+.+.
T Consensus        89 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~  156 (401)
T PRK11043         89 LWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH  156 (401)
T ss_pred             HHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88877766655 46667777777777888899999999999999999989999999999999998875

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.39  E-value=4.1e-12  Score=118.68  Aligned_cols=164  Identities=16%  Similarity=0.219  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHH
Q 013707           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (438)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~   89 (438)
                      .+.+....+...+.........+.+.+        +.+.+..+.+.+.+...++..+++++.|+++||+|||+.+..+..
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~  278 (377)
T TIGR00890       207 FWVLYLSFFLNAVSGLLLIGLYKPYGQ--------SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFG  278 (377)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            333333344444444444444555544        234455677888999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH---
Q 013707           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---  166 (438)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~---  166 (438)
                      +.+++.+...+.++.. ...++...++.|+ +.+...+...+++.|.+|+++|++..|+.+....+|..++|.+.+.   
T Consensus       279 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  356 (377)
T TIGR00890       279 ISAVGMAAMLFIPMLN-DVLFLATVALVFF-TWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT  356 (377)
T ss_pred             HHHHHHHHHHHcccch-hHHHHHHHHHHHH-HhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888777776521 2334456677787 6666667778899999999999999999999999999999988876   


Q ss_pred             -hhHHHHHHHHHHHHHHH
Q 013707          167 -LSTTSAFQAATIVSMLA  183 (438)
Q Consensus       167 -~~w~~~f~~~~~~~~i~  183 (438)
                       .||+..|.+.+++.+++
T Consensus       357 ~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       357 EIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             hhchhhHHHHHHHHHHHh
Confidence             38999998887765543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.39  E-value=5.3e-11  Score=111.34  Aligned_cols=148  Identities=15%  Similarity=0.091  Sum_probs=115.0

Q ss_pred             chhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 013707          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (438)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (438)
                      |+++...+..+.............+.+-++.+|+|+.+.+++.+...+...+.+ +..|++.||+|.|+++..+.++..+
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~r-ip~G~l~Dr~G~R~v~~~~~ll~~i  112 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLR-VPYSFMVPIFGGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChHHHHHHHHHHHH
Confidence            455555555555555555555555555554699999999999999999999998 5668999999999999999999988


Q ss_pred             HHHHhHhc-----ccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHH
Q 013707          326 NMFICSIS-----WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  395 (438)
Q Consensus       326 ~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  395 (438)
                      ..+...+.     ++.+.+++ .++.|++ +..++.....+++.+|+++||++.|+.....++|..+++.+...+.
T Consensus       113 ~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i  187 (462)
T PRK15034        113 PCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI  187 (462)
T ss_pred             HHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            88888875     55555555 5677776 6678888899999999999999999997777777776666665544

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.39  E-value=8.2e-11  Score=113.13  Aligned_cols=131  Identities=15%  Similarity=0.119  Sum_probs=104.3

Q ss_pred             hhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHH-H
Q 013707          264 GMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-T  342 (438)
Q Consensus       264 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  342 (438)
                      ......|.+ .+.+|++..+.+.+.+...++..++. ++.|+++||+|+|+.+..+.+..+++.++..+.++.+.+++ .
T Consensus        54 ~~~~~~~~l-~~~~gls~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r  131 (476)
T PLN00028         54 AAAPLLPII-RDNLNLTKSDIGNAGIASVSGSIFSR-LAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVR  131 (476)
T ss_pred             HHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            333444444 55589999999998888888888888 88899999999999999999888888888888877766655 4


Q ss_pred             HHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          343 TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      ++.|++.+... ....++.+.+|+++||++.|+.+...++|..+++.+.+.+.+.
T Consensus       132 ~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~  185 (476)
T PLN00028        132 FFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPL  185 (476)
T ss_pred             HHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56676666543 3456788999999999999999998889999988888766554

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.38  E-value=1.9e-11  Score=114.43  Aligned_cols=163  Identities=14%  Similarity=0.097  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHH
Q 013707            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (438)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (438)
                      |.++...+..++...+........|.+.+|        .+.+..+.|++.+...++..+..++.|++.||+|+|+.+.++
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~--------~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~  276 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA--------AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLIS  276 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHH
Confidence            445555666666677777777788888763        466667889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHH-HHHHhhhhhhHhhhHH
Q 013707           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL-GVLSASFVCGTLAARF  166 (438)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~  166 (438)
                      .+...+.....+++++   .+.++..+++.|+ +.+...+....++.+. |+++|++..+.++ ...++|..+||.++|+
T Consensus       277 ~~~~~~~~~~~~~~~~---~~~~~~~q~l~g~-~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~  351 (382)
T TIGR00902       277 AIACVGRWAIIGAIEA---FPLIFLLQILHCG-TFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGF  351 (382)
T ss_pred             HHHHHHHHHHHHhHhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999   8999999999999 8899999999999998 9999999999986 4678899999998887


Q ss_pred             h----hHHHHHHHHHHHHHHHH
Q 013707          167 L----STTSAFQAATIVSMLAA  184 (438)
Q Consensus       167 ~----~w~~~f~~~~~~~~i~~  184 (438)
                      +    ++ ..|+..+.++++..
T Consensus       352 l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T TIGR00902       352 IYPTLGA-GTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHhccH-HHHHHHHHHHHHHH
Confidence            5    43 55777776665543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00895 2A0115 benzoate transport

Probab=99.37  E-value=1.2e-11  Score=116.38  Aligned_cols=136  Identities=13%  Similarity=0.114  Sum_probs=116.3

Q ss_pred             hhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHH
Q 013707          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVP  339 (438)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (438)
                      ..........|.+.++ +|.++.+.+++.+...++..++. ++.++++||+|||+.+..+..+..++.++..+.++.+..
T Consensus        31 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (398)
T TIGR00895        31 YDLAAMGFAAPAISAE-WGLDPVQLGFLFSAGLIGMAFGA-LFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQL  108 (398)
T ss_pred             HHHHHHHhhHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHH-HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHH
Confidence            3334444455555544 89999999999999999999988 888999999999999999999998888888888777665


Q ss_pred             HH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          340 YA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       340 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      .+ ..+.+++.+...+...+++.|..|+++|+++.|+.+....+|..++|.+.+.+.+.
T Consensus       109 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  167 (398)
T TIGR00895       109 LILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV  167 (398)
T ss_pred             HHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc
Confidence            55 57788888889999999999999999999999999999999999999999998875

>TIGR00897 2A0118 polyol permease family

Probab=99.37  E-value=4.1e-11  Score=112.93  Aligned_cols=151  Identities=18%  Similarity=0.127  Sum_probs=122.2

Q ss_pred             cchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 013707          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (438)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  324 (438)
                      +|.+....+..++..........+++.+.++ +|.++.+.+...+...++..+++ ++.|++.||+|||+.+..+..+.+
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~-~~~g~l~dr~g~k~~l~~~~~~~~   89 (402)
T TIGR00897        12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKA-LGLSPQQSASAFTLYGIAAAISA-WISGVVAEIIGPLKTMMIGLLLWC   89 (402)
T ss_pred             CchhhHHHHHHHHHHHhhhhHHHhHHHHHHH-hCCCHHHhHHHHHHHHHHHHHHH-HHHHHHHHHcCcHHHHHHHHHHHH
Confidence            4556677777777777777778888999866 79999999999999999999998 888999999999999999988888


Q ss_pred             HHHHHhH---hc-ccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhh-hhhhHhHHHHHHH
Q 013707          325 INMFICS---IS-WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFAN-IVSPLIFSPLTAL  397 (438)
Q Consensus       325 ~~~~~~~---~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~~g~~~~g~l~~~  397 (438)
                      ++.+...   .. .+.+..+. ..+.|++.+...+...+.+.+..|+++|+++.|+.+....+|. .++|.+.+.+.+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~  168 (402)
T TIGR00897        90 VGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA  168 (402)
T ss_pred             HHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            7765442   22 23444443 4566777777777777888889999999999999999999996 5789888888765

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.37  E-value=5.3e-11  Score=112.45  Aligned_cols=135  Identities=12%  Similarity=0.112  Sum_probs=113.3

Q ss_pred             hhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHH
Q 013707          261 SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPY  340 (438)
Q Consensus       261 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (438)
                      ........+|.+.+ ++|.++.+.+...+...++..++. +..|+++||+|||+.+..+.....++.+.....++.+.++
T Consensus        28 ~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~-~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~  105 (406)
T PRK15402         28 ANDMIQPGMLAVVE-DFNAGAEWVPTSMTAYLAGGMFLQ-WLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFT  105 (406)
T ss_pred             hhhhHhcchHHHHH-HhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            34444555666554 489999999999999999999988 8889999999999999999988888888888877776665


Q ss_pred             H-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          341 A-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       341 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      . ..+.|++.+...+...+.+.|.+|+++|++..++......++..++|.+.+.+.++
T Consensus       106 ~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~  163 (406)
T PRK15402        106 LLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV  163 (406)
T ss_pred             HHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5 46678888777888889999999999999999999888889999999999988775

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.36  E-value=4.7e-11  Score=111.55  Aligned_cols=168  Identities=14%  Similarity=0.141  Sum_probs=124.7

Q ss_pred             HHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHH-HHHHHHHHHHHHh
Q 013707          252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS-LGLFAACINMFIC  330 (438)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~  330 (438)
                      .+..++..+........+|.|+++++|.|+.+.|++.+...+...+.+ +..|+++||+|||+.+. .+.....++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVS-QLLATRSDYQGDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence            345677777888889999999988899999999999999999999988 77899999999887655 4555556666677


Q ss_pred             HhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhH--HHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCCCC
Q 013707          331 SISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKA--QGCISGISSFANIVSPLIFSPLTALFLSKGAPFNF  407 (438)
Q Consensus       331 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~  407 (438)
                      .+.++.+.++. ..+.+.+.+...|...++..|..|++.|++.  .+.......+|..++|.+.+.+.+..        .
T Consensus        82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~--------~  153 (375)
T TIGR00899        82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF--------G  153 (375)
T ss_pred             HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc--------c
Confidence            77777665554 3555666666778888888888887777654  57777888999999999999988752        2


Q ss_pred             CchHHHHHHHHHHHHHHHHHh
Q 013707          408 PGFSIMCIGLASVRAFTYELL  428 (438)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~  428 (438)
                      ....+.+.+++.++..+..++
T Consensus       154 ~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       154 FTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             cHHHHHHHHHHHHHHHHHHHH
Confidence            223444455544444444333

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.36  E-value=1.9e-11  Score=114.91  Aligned_cols=130  Identities=11%  Similarity=0.041  Sum_probs=115.6

Q ss_pred             hHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHH-HHH
Q 013707          266 QASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTA  344 (438)
Q Consensus       266 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  344 (438)
                      ....|. +++++|.++.+.+++.+...++..++. +..|++.||+|||+.+..+..+..++.....+.++.+.... ..+
T Consensus        14 ~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   91 (399)
T TIGR00893        14 SFAAPM-LQEDLGLSAAQYGYVFSAFSWGYVVGQ-FPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVL   91 (399)
T ss_pred             hHhHHH-HHHhhCCChhhHHHHHHHHHHHHHHHH-HhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            333444 556689999999999999999999998 88899999999999999999999998888888887777666 578


Q ss_pred             HHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          345 FSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      .|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+.
T Consensus        92 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  144 (399)
T TIGR00893        92 LGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH  144 (399)
T ss_pred             HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999988775

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.36  E-value=3.3e-11  Score=110.43  Aligned_cols=176  Identities=16%  Similarity=0.173  Sum_probs=136.8

Q ss_pred             hcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 013707          242 LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLF  321 (438)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  321 (438)
                      +..++....++...++.++......+++--++++ ++-.+.-.|......-.+-++ .+++.+++.+|+|+.+++..++.
T Consensus       367 ~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~-~~ffs~klI~kiGHv~v~~lgLa  444 (618)
T KOG3762|consen  367 VFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEIL-FYFFSFKLIEKIGHVNVMYLGLA  444 (618)
T ss_pred             HhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHH-HHHHHHHHHHHhcccceeeehhh
Confidence            3345666667778888888888888998888888 465555556444444444444 45888999999999999999999


Q ss_pred             HHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHh-hhhhhhhhHhHHHHHHHHh
Q 013707          322 AACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGIS-SFANIVSPLIFSPLTALFL  399 (438)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~~g~~~~g~l~~~~~  399 (438)
                      +..+-++.+....|.|.... -++-++..+..+.+.-++++...||+.+.++.++..... .+|-.+|.+++|.+.+.++
T Consensus       445 ~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg  524 (618)
T KOG3762|consen  445 CNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG  524 (618)
T ss_pred             HHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh
Confidence            99999999999999998776 588899999999999999999999999999999987654 8999999999999988743


Q ss_pred             cCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013707          400 SKGAPFNFPGFSIMCIGLASVRAFTYEL  427 (438)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (438)
                              ....|-..++.+++.+++..
T Consensus       525 --------~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  525 --------ARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             --------hHHHHHHHHHHHHHHHHHHH
Confidence                    23334444444444444443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.36  E-value=1e-11  Score=111.57  Aligned_cols=379  Identities=14%  Similarity=0.126  Sum_probs=204.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccc----cCcchH
Q 013707            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAM   83 (438)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grk~~   83 (438)
                      +.+..+....+-..+++..-....|+|.++.        +++..+.+.+--+..+...+.+|+.|..+||    |||||.
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~l--------Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRP  103 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSL--------GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRP  103 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHc--------CCCcccccccccccccccceecccccccccccccccccccc
Confidence            4444455555556677777777788887743        4444555666666678888999999999995    799888


Q ss_pred             hHH-HHHHHHHHHHHHHhcccch--------------hHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhH-HHH
Q 013707           84 LTL-PLTLSIIPLAILAYRRSIS--------------FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRAS-AFG  147 (438)
Q Consensus        84 l~~-~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~-~~~  147 (438)
                      ++. +....+++.++..++.+..              .....++.--+.-+ +.........+++.|...++++.+ +++
T Consensus       104 fI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~-A~n~~qgp~ra~L~Dl~~~d~~~~~Ans  182 (498)
T KOG0637|consen  104 FILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDV-ANNTLQGPCRALLADLARGDAKKTRANS  182 (498)
T ss_pred             hHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHh-hhhhhhhhHHHHHHHhccChhhhhccch
Confidence            775 4456677777777765421              12233344444444 555677788999999998776666 999


Q ss_pred             HHHHHHHhhhhhhHhhhHHhhHH--HHHHHHHHHHHHHHHHHHHhcccCCCCCCCC-CCCcccchhccccccCCCCCCCC
Q 013707          148 ILLGVLSASFVCGTLAARFLSTT--SAFQAATIVSMLAAAYMRVFLKDDVPNDDDD-DLTRPIITEETEGVNQNESNSPV  224 (438)
Q Consensus       148 ~~~~~~~~g~~~g~~l~~~~~w~--~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  224 (438)
                      .......+|..+|..++++.+|+  .+|......-+.+..+-..+..|-+-....+ +......++..   ..+..+.+.
T Consensus       183 ~f~~f~avGnvLGY~~g~y~~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~---s~~~~~~~~  259 (498)
T KOG0637|consen  183 VFSFFMAVGNVLGYALGSYLGLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPL---SPKGTTARS  259 (498)
T ss_pred             hHHHHHHhcceeeeecccccCceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCC---CCCcccccc
Confidence            99999999999999999887774  2333332222222222211111111000000 00000000000   000000000


Q ss_pred             CccccccCCchhHHHHh-hcccchhHHHHHHHHHHHhhhchhhHHHHHHH-HhHcCCChhHH----------------HH
Q 013707          225 KIPVCKKIPSIRDLICL-LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFL-KAQFHFNKNQF----------------AD  286 (438)
Q Consensus       225 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~----------------~~  286 (438)
                      +.   .......+.+.. ...+|.++.+++...+.+++...+.-+...++ ++.|+-|+...                .+
T Consensus       260 ~~---~~~~~~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~  336 (498)
T KOG0637|consen  260 KS---SKLPFLLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCL  336 (498)
T ss_pred             cc---cCcchHHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchH
Confidence            00   000011121212 23466788888888888888777766666655 33444332211                12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhh---------------
Q 013707          287 LMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVV---------------  350 (438)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------------  350 (438)
                      =+..+.+...+.+ ....++.||+|.|+....+.....++..+.....+.+.... ....|...+               
T Consensus       337 GL~ins~~lgi~S-~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~  415 (498)
T KOG0637|consen  337 GLMLNSIVLGIYS-LLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAI  415 (498)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHH
Confidence            2345556666666 66779999999655444444333333333333322222111 111121111               


Q ss_pred             ------hhHHHHHHHHhhcCCC--CcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCC
Q 013707          351 ------FATPSFRSIVSKQVGP--NEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKG  402 (438)
Q Consensus       351 ------~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~  402 (438)
                            ..+...++..+....+  ..+|...|+.+..-.+.+.+.....|.+.+..++.+
T Consensus       416 ~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~  475 (498)
T KOG0637|consen  416 LGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGN  475 (498)
T ss_pred             hCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcc
Confidence                  1111112222111111  234667777888888888888888899988876543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.35  E-value=2.2e-11  Score=108.76  Aligned_cols=144  Identities=13%  Similarity=0.065  Sum_probs=122.3

Q ss_pred             HHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhH
Q 013707          252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICS  331 (438)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  331 (438)
                      ++....+.+.--.++.-.|. +.++.++|.+|.|.+.+...+...++. .+.|.++||.+.|..+..++++.++..++++
T Consensus        35 fiGYa~fYl~RknF~~a~p~-l~e~~~lsk~~lG~i~s~f~i~YG~sK-f~~G~~sDr~npr~fm~~gLilsai~nil~G  112 (448)
T COG2271          35 FIGYAAFYLTRKNFNLAMPA-LIEDGGLSKTQLGILGSAFSITYGVSK-FVMGVLSDRSNPRYFMAFGLILSAIVNILFG  112 (448)
T ss_pred             HHHHHHHHHHHHhHhhccHH-HHHhcCCCHHHHHHHHHHHHHHHHHHH-HHhhhhcccCCCceeehHHHHHHHHHHHHHh
Confidence            33333333443344444444 445578999999999999999999999 8899999999999999999999999999999


Q ss_pred             hcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhH--HHHHHH
Q 013707          332 ISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIF--SPLTAL  397 (438)
Q Consensus       332 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~--g~l~~~  397 (438)
                      +.++.+.+.+ ..+-|.+.+...|+....+..-+|+++||+..++-|+..++|+.+.|.+.  +.+.++
T Consensus       113 fs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~  181 (448)
T COG2271         113 FSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH  181 (448)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence            9998777666 57889999999999999999999999999999999999999999999999  777665

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.35  E-value=3.6e-11  Score=112.48  Aligned_cols=133  Identities=12%  Similarity=0.110  Sum_probs=117.5

Q ss_pred             chhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHH-
Q 013707          263 GGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-  341 (438)
Q Consensus       263 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  341 (438)
                      ......+|.+.++ +|.|+.+.+...+...++..++. +..|++.||+|||+.+..+..+..++.....+.++.+.... 
T Consensus         8 ~~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (377)
T PRK11102          8 DMYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQ-LFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM   85 (377)
T ss_pred             HHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            3445667777776 79999999999999999999998 88899999999999999999999999988888877766655 


Q ss_pred             HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          342 TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      ..+.+++.+...+...+++.|..|+++|+++.++.+....+|..++|.+.+.+.+.
T Consensus        86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  141 (377)
T PRK11102         86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW  141 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57778888888899999999999999999999999999999999999999998875

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.34  E-value=1.1e-10  Score=112.00  Aligned_cols=166  Identities=18%  Similarity=0.180  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHH
Q 013707           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (438)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~   89 (438)
                      +..+....++..+..+.+...+|.+.++       +++.++...|++.+++.+|.+++++..+++.+|+++++.+..+.+
T Consensus       220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~-------~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~  292 (524)
T PF05977_consen  220 LRSVLLRSFLFNLFASAVWALLPLFARD-------VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASL  292 (524)
T ss_pred             HHHHHHHHHHHHHhhhHHHHhhhHHHHH-------HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHH
Confidence            3333443444444445555678888765       345556778999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH---
Q 013707           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---  166 (438)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~---  166 (438)
                      +.+++.+..+++++   .+..++.-++.|+ +.....+..++.+.+..|++.|||.+++++.....+..+|..+.|.   
T Consensus       293 ~~a~~~~~lal~~~---~~~~~~~l~l~G~-~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~  368 (524)
T PF05977_consen  293 LFALALLLLALSPS---FWLALIALFLAGA-AWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD  368 (524)
T ss_pred             HHHHHHHHHhcchH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999   8888889999999 7888888889999999999999999999998888777777777666   


Q ss_pred             -hhHHHHHHHHHHHHHHHHHH
Q 013707          167 -LSTTSAFQAATIVSMLAAAY  186 (438)
Q Consensus       167 -~~w~~~f~~~~~~~~i~~~~  186 (438)
                       +|-+..+.+.++..++..++
T Consensus       369 ~~g~~~al~~a~~~lll~~~~  389 (524)
T PF05977_consen  369 HFGVRTALLIAGAALLLSALI  389 (524)
T ss_pred             HhCHHHHHHHHHHHHHHHHHH
Confidence             46677777776654444333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.33  E-value=9e-11  Score=110.45  Aligned_cols=143  Identities=14%  Similarity=0.118  Sum_probs=116.3

Q ss_pred             HHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHh
Q 013707          253 VVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSI  332 (438)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (438)
                      ....+..+........+|.+.++ +|.|+.+.+...+...++..++. +..|+++||+|||+.+..+.....++.+....
T Consensus        15 ~~~~~~~~~~~~~~p~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~-~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~   92 (394)
T PRK11652         15 LLVAVGQMAQTIYVPAIADMARD-LNVREGAVQAVMAAYLLTYGLSQ-LFYGPLSDRVGRRPVILVGMSIFILGTLVALF   92 (394)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444556666655 79999999999999999999998 88899999999999999999988888888877


Q ss_pred             cccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          333 SWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       333 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      .++.+.+.. ..+.|++.+...+.......|..++++++++.+..+....++..++|.+.+.+.+.
T Consensus        93 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~  158 (394)
T PRK11652         93 AHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL  158 (394)
T ss_pred             HccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            777766655 56677777777788888888989999999999999999999999999999988764

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.32  E-value=5.8e-11  Score=114.16  Aligned_cols=133  Identities=11%  Similarity=0.017  Sum_probs=109.6

Q ss_pred             chhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHh-----cccch
Q 013707          263 GGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSI-----SWSAW  337 (438)
Q Consensus       263 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  337 (438)
                      .......|.+.+ ++|.+..+.|++.+...++..+++ +..|+++||+|+|+++..+.+..++..+.++.     .++.+
T Consensus        46 ~~~~~~~~~i~~-~~~~s~~~~g~~~s~~~~~~~~~~-~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (467)
T PRK09556         46 KNFKAAQNDMIS-TYGLSTTELGMIGLGFSITYGVGK-TLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLG  123 (467)
T ss_pred             cChhhhhHHHHH-hcCCCHHHHHHHHHHHHHHHHHHH-hhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence            344455666554 589999999999999999999998 88899999999999998888777766665554     34555


Q ss_pred             HHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          338 VPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       338 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      .+.+ -.+.|++.+...|....++.+.+|+++||++.|+.+....+|.++++.+..++.+.
T Consensus       124 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~  184 (467)
T PRK09556        124 LMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY  184 (467)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence            5554 46778888888899999999999999999999999999999999999888777665

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.32  E-value=1.8e-10  Score=108.19  Aligned_cols=132  Identities=10%  Similarity=-0.018  Sum_probs=116.6

Q ss_pred             chhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHH-
Q 013707          263 GGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-  341 (438)
Q Consensus       263 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  341 (438)
                      ......+|...+| +|+|..+.++..+...++..+++ +..|++.||+|||+++..+..+.+++.+..++.++.+..+. 
T Consensus        26 ~~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~~~~l~~-~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~  103 (393)
T PRK09705         26 TSVGPLLPQLRQA-SGMSFSVAALLTALPVVTMGGLA-LAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSS  103 (393)
T ss_pred             hccchhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHh-hhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHH
Confidence            4455666666654 89999999999999999999988 88899999999999999999999999999999998887666 


Q ss_pred             HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          342 TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      .++.|++.+...+.....+.+.+| ++|++++|........|..+++.+.+.+.++
T Consensus       104 r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~  158 (393)
T PRK09705        104 ALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQH  158 (393)
T ss_pred             HHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            578899999888888889898887 8899999999999999999999999988775

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.31  E-value=9.7e-11  Score=111.47  Aligned_cols=148  Identities=13%  Similarity=0.069  Sum_probs=121.2

Q ss_pred             hHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 013707          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (438)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (438)
                      +....+..+.............|. .++++|.++.+.++..+...++..+++ +..|+++||+|||+.+..+.+..+++.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~~~~~~~l~~-~~~g~l~dr~g~r~~l~~~~~~~~~~~   97 (426)
T PRK12307         20 LFSAWLGYVFDGFDFMLIFYIMYL-IKADLGLTDMEGAFLATAAFIGRPFGG-ALFGLLADKFGRKPLMMWSIVAYSVGT   97 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            334444444444444444444444 445589999999999999999999998 888999999999999999999999999


Q ss_pred             HHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          328 FICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       328 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      +...+.++.+...+ -.+.|++.+...+....++.|..|+++|+++.++......+|..+++.+.+.+.+.
T Consensus        98 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~  168 (426)
T PRK12307         98 GLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA  168 (426)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc
Confidence            98888888776666 57888888989999999999999999999999999999999999998888777654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.30  E-value=2.2e-10  Score=108.17  Aligned_cols=135  Identities=15%  Similarity=0.103  Sum_probs=113.1

Q ss_pred             hhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHH
Q 013707          261 SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPY  340 (438)
Q Consensus       261 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (438)
                      ........+|... +.+|.+..+.+...+...++..+++ +..|+++||+|||+++..+..+..++.+...+.++.+.++
T Consensus        31 ~~~~~~p~l~~i~-~~~~~~~~~~~~~~s~~~~~~~~~~-~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~  108 (413)
T PRK15403         31 TTDLIQPGIINVV-RDFNADVSLAPASVSLYLAGGMALQ-WLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFL  108 (413)
T ss_pred             HHHhhccCHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHH-HhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3334444455544 4589999999999999999999998 7889999999999999999999999998888888877666


Q ss_pred             H-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          341 A-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       341 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      + -++.|++.+...+.......|.+|+++++++.++.+....++..+||.+++.+.++
T Consensus       109 ~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~  166 (413)
T PRK15403        109 IARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF  166 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5 47778777766677778888999999999999999999999999999999888765

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.30  E-value=1.4e-10  Score=107.45  Aligned_cols=134  Identities=9%  Similarity=-0.147  Sum_probs=102.1

Q ss_pred             hhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHH
Q 013707          261 SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPY  340 (438)
Q Consensus       261 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (438)
                      .+..+...+|.+.+| +|+|+.+.|++.+...++..+++ +..|+++||+|||+++..+......+.......++.+.+.
T Consensus         6 ~~~~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~g~~i~~-~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (368)
T TIGR00903         6 IWVTFSPVLSLVAED-IDVSKEELGLLAITYPAAFLALT-IPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLL   83 (368)
T ss_pred             HHHHHHhhHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            444555666776665 89999999999999999999998 7789999999998876655544444433222224555555


Q ss_pred             H-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          341 A-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       341 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      . -++.|++.+. .+.......|.+|+++|+++.++.+....+|..+++.+.+.+.+.
T Consensus        84 ~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~  140 (368)
T TIGR00903        84 ACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA  140 (368)
T ss_pred             HHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4 4677888775 445555668899999999999999999999999999999988764

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.29  E-value=2.3e-11  Score=113.76  Aligned_cols=137  Identities=18%  Similarity=0.177  Sum_probs=114.9

Q ss_pred             HHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccch
Q 013707          258 SGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAW  337 (438)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (438)
                      ............|. +++.+|+++.+.+++.+...++..++. +..|+++||+|||+.+..+..+..++.++..+.++.+
T Consensus         7 ~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~   84 (379)
T TIGR00881         7 YYLVRKNFALAMPY-LVEEIGLSKTDLGLLLSSFSIAYGISK-FVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLW   84 (379)
T ss_pred             HHHhHHhhhhhhHH-HHHHhCCCHhHHHHHHHHHHHHHHhhh-hhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHH
Confidence            33344444555554 555689999999999999999999998 8889999999999999999999999999988888877


Q ss_pred             HHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhH-hHHHHHH
Q 013707          338 VPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPL-IFSPLTA  396 (438)
Q Consensus       338 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~-~~g~l~~  396 (438)
                      ...+ ..+.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|. +.+.+.+
T Consensus        85 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  145 (379)
T TIGR00881        85 VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE  145 (379)
T ss_pred             HHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh
Confidence            6666 577788888889999999999999999999999999999999999995 4444433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.29  E-value=4.4e-11  Score=115.56  Aligned_cols=149  Identities=13%  Similarity=0.069  Sum_probs=109.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHh---cccch-----hHHHHHHHHHhhh
Q 013707           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY---RRSIS-----FFYAYYALRTLTA  118 (438)
Q Consensus        47 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~---~~~~~-----~~~~l~~~r~l~G  118 (438)
                      +.+....++......++..++.++.|+++||+|||+.+..+.++.+++.++..+   .....     ....+....+..+
T Consensus       315 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (481)
T TIGR00879       315 GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIA  394 (481)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHH
Confidence            334455678888888999999999999999999999999988887777666652   11110     1223333333333


Q ss_pred             hcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh----hHHHHHHHHHHHHHHHHHHHHHhcccC
Q 013707          119 MVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDD  194 (438)
Q Consensus       119 ~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~~~  194 (438)
                      . ......+....++.|.+|+++|+++++..+...++|.+++|.+.+.+    +|++.|++.++++++..+...+..||+
T Consensus       395 ~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       395 F-FAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             H-HHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccC
Confidence            3 22333466777889999999999999999999999999999887763    789999988888777766666667765


Q ss_pred             CC
Q 013707          195 VP  196 (438)
Q Consensus       195 ~~  196 (438)
                      ++
T Consensus       474 ~~  475 (481)
T TIGR00879       474 KG  475 (481)
T ss_pred             CC
Confidence            43

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.29  E-value=1.6e-10  Score=110.27  Aligned_cols=130  Identities=13%  Similarity=0.106  Sum_probs=105.0

Q ss_pred             hhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcc----cchHHH
Q 013707          265 MQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW----SAWVPY  340 (438)
Q Consensus       265 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  340 (438)
                      .....| ++++ .|.++.+.++..+...++..++. +..|+++||+|+|+.+..+.++.+++.+.....+    +.+...
T Consensus        46 ~~~~~p-~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  122 (438)
T TIGR00712        46 FALAMP-YLVE-QGFSKGELGFALSAISIAYGFSK-FIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMF  122 (438)
T ss_pred             HHhhhH-HHHH-cCCCHhHhHHHHHHHHHHHHHhh-hccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHH
Confidence            344444 5556 49999999999999999999998 8889999999999999998888888877766542    222333


Q ss_pred             H-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          341 A-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       341 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      . ..+.+++.+...+.....+.|.+|+++||++.|+.+....++..++|.+.+...+.
T Consensus       123 ~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~  180 (438)
T TIGR00712       123 VLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW  180 (438)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            3 45667777877888888899999999999999999999999999999888766553

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.29  E-value=1.7e-07  Score=88.06  Aligned_cols=358  Identities=11%  Similarity=0.109  Sum_probs=205.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHH-hhhhcccccccCcchHhHH
Q 013707            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVM-MPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~-~~~~G~l~Dr~Grk~~l~~   86 (438)
                      +.+....+..|+..+.+++.-|.=..+..       +..+.......++-+...++..+. .++.+++++|++|++++-+
T Consensus         7 ~k~~~~~l~fF~il~~Y~iLR~lKD~lvv-------~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~   79 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTILRDTKDTLVV-------TAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYT   79 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhheee-------cccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHH
Confidence            34555666667777777766665433221       111222345677777777777776 8999999999999999988


Q ss_pred             HHHHHHHHHHHHHhc--ccchh--------------------------HHHHHHHHHhhhhcchhhHhh-hhhHhhhccC
Q 013707           87 PLTLSIIPLAILAYR--RSISF--------------------------FYAYYALRTLTAMVCEGSINC-LALAYVADNI  137 (438)
Q Consensus        87 ~~~~~~~~~~~~~~~--~~~~~--------------------------~~~l~~~r~l~G~~~~~~~~~-~~~~~i~~~~  137 (438)
                      ....+.....+.++.  |+.+.                          .|...+..+...+.+ ..... ...++.+|.+
T Consensus        80 ~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~-~~vvS~lFW~fandi~  158 (472)
T TIGR00769        80 VISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWG-SVVLSLLFWGFANQIT  158 (472)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhcC
Confidence            777777666665554  11000                          122223333444422 23333 6788999999


Q ss_pred             CccchhHHHHHHHHHHHhhhhhhHhhhHHhh------------HH----HHHHHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 013707          138 SERQRASAFGILLGVLSASFVCGTLAARFLS------------TT----SAFQAATIVSMLAAAYMRVFLKDDVPNDDDD  201 (438)
Q Consensus       138 ~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~~------------w~----~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~  201 (438)
                      +.+|-.|..++...+.++|.++|+.+..++.            |.    ..+.+.++...+. +.+...+.+....+++.
T Consensus       159 t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-~~~~~~l~~~~~~~~~~  237 (472)
T TIGR00769       159 TIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAI-ILLYWWVNRNVLTDPRS  237 (472)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCccc
Confidence            9999999999999999999999998877653            21    2233333333332 33333343322111110


Q ss_pred             CCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCCh
Q 013707          202 DLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNK  281 (438)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  281 (438)
                      .+               .++   ++++++.+.+..+.++.+.++|.++.+.+...+++......+...-...++.+. |+
T Consensus       238 ~~---------------~~~---~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p-~~  298 (472)
T TIGR00769       238 YN---------------PAL---KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYP-SP  298 (472)
T ss_pred             cc---------------hhh---ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CH
Confidence            00               000   111112244678888889999999988888888887777777666666666553 33


Q ss_pred             hHH----HHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH---HHHHhHhcccch----------HHHHHHH
Q 013707          282 NQF----ADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI---NMFICSISWSAW----------VPYATTA  344 (438)
Q Consensus       282 ~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----------~~~~~~~  344 (438)
                      .+.    |.+....++..++.+ ++.+++.+|+|-+....+.=+...+   +++.+....+..          ......+
T Consensus       299 ~~~~~f~g~~~~~~gi~tl~~~-l~~~~l~~~~Gw~~~a~i~Pii~lit~~~Ff~~~~f~~~~~~~~~~l~~~pl~l~v~  377 (472)
T TIGR00769       299 NEYSAFMGDFSTWTGVVSVTMM-LLSGNVIRKYGWLTAALITPLVMLLTGVAFFSLIFFGGPAAPLVAKLGMTPLLLAVY  377 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccChHHHHHH
Confidence            332    445555666666666 4558999999877654443333322   333332222211          1111111


Q ss_pred             HHhh---------hhhhHHHHHHHHhhcCCCCcchhHHHHHhhHh-hhhhhhhhHhHHHHH
Q 013707          345 FSVL---------VVFATPSFRSIVSKQVGPNEQGKAQGCISGIS-SFANIVSPLIFSPLT  395 (438)
Q Consensus       345 ~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~~g~~~~g~l~  395 (438)
                      .+..         .+...|+-- .+---.++|.|.++=+....+. .+|-..|..+...+.
T Consensus       378 ~g~~~~v~~k~~kYsl~dp~kE-mly~pld~e~K~K~Ka~iD~v~~r~Gks~gs~i~~~l~  437 (472)
T TIGR00769       378 VGAIQNILSKSTKYSLFDATKE-MAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQQGLL  437 (472)
T ss_pred             HHHHHHHHHHHhhhccccHHHH-HhcccCCHHHHHHhHhhhhhhhhhhhhHHHHHHHHHHH
Confidence            1111         111112111 1222357788888888777554 677777777655543

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.28  E-value=3.6e-10  Score=106.42  Aligned_cols=148  Identities=11%  Similarity=0.041  Sum_probs=121.4

Q ss_pred             hHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 013707          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (438)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (438)
                      +.......+..++.........|.+ ++++|.++.+.|++.+...++..+++ +..+++.||+|+|+.+..+..+.+++.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~-~~~g~l~~r~G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMA-IPAAIFMKKLSYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            3344455555555555555666666 56689999999999999999999999 788999999999999999999999988


Q ss_pred             HHhHhc---ccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          328 FICSIS---WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       328 ~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      ++....   ++.+.... .++.|++.+...+..+.++.+..|++++++..++.+....+|..++|.+.+.+...
T Consensus        83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~  156 (410)
T TIGR00885        83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS  156 (410)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            776543   34444444 57789999999999999999999999999999999999999999999999988754

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.28  E-value=1.7e-10  Score=108.66  Aligned_cols=150  Identities=10%  Similarity=0.003  Sum_probs=112.9

Q ss_pred             cchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 013707          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (438)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  324 (438)
                      +|.++......++..........++|.|+++++|.++.+.|...+...+...+++ +..|+++||+|||+.+..+.....
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~-~~~G~l~Dr~grr~~~~~~~~~~~   79 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQ-PLFGLISDKLGLKKHLLWIISGLL   79 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHH
Confidence            4667888888888888888999999999999899999999999999999999999 888999999999999887665554


Q ss_pred             HHHHHh---Hhcc----cch-HHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHH
Q 013707          325 INMFIC---SISW----SAW-VPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  395 (438)
Q Consensus       325 ~~~~~~---~~~~----~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  395 (438)
                      ++....   .+.+    +.+ .... .++.+++.+...+....+..+..+  +++...|.......+|..++|.++|.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~  157 (396)
T TIGR00882        80 VLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILF  157 (396)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhh
Confidence            433322   1111    111 1111 344566666667777777766433  3456778888888999999999999876


Q ss_pred             HH
Q 013707          396 AL  397 (438)
Q Consensus       396 ~~  397 (438)
                      +.
T Consensus       158 ~~  159 (396)
T TIGR00882       158 SI  159 (396)
T ss_pred             cc
Confidence            53

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.28  E-value=3e-10  Score=104.62  Aligned_cols=131  Identities=13%  Similarity=0.128  Sum_probs=117.4

Q ss_pred             chhhHHHHHHHHhHcCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHH
Q 013707          263 GGMQASFLYFLKAQFHFNKNQ-FADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA  341 (438)
Q Consensus       263 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (438)
                      -....+...++.+.+|+++.+ .|.+.+....+..+.. +.+|+++||+|.|+.+..+.+...+..++.++.++...+.+
T Consensus        42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~q-Ip~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i  120 (511)
T TIGR00806        42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVL-VPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL  120 (511)
T ss_pred             hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666777789999999 9999999999999999 88899999999999999999999999999999877766666


Q ss_pred             -HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHH
Q 013707          342 -TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  395 (438)
Q Consensus       342 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  395 (438)
                       -+++|++.+... ....++.+.+|+++|+++.|..+....+|.++++++.+.+.
T Consensus       121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~  174 (511)
T TIGR00806       121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV  174 (511)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             588999999999 99999999999999999999999999999999999999843

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.26  E-value=9e-11  Score=110.33  Aligned_cols=159  Identities=13%  Similarity=0.042  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHH
Q 013707           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (438)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~   89 (438)
                      +.......+............+|.+.++       +.+.+..+.+...+...++..++.++.|+++||+|||+.+.....
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~  293 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQ-------TLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTV  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            4444445555555566666778888754       234455667888888999999999999999999999998775554


Q ss_pred             HHHHHH--HHHHhc--ccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHH-HHHHHhhhhhhHhhh
Q 013707           90 LSIIPL--AILAYR--RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGIL-LGVLSASFVCGTLAA  164 (438)
Q Consensus        90 ~~~~~~--~~~~~~--~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~l~  164 (438)
                      +..+..  ....+.  ++   .+.+....++.|+ +.+...+...+++.|.+|+++|+++.+.. +....+|..++|.++
T Consensus       294 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~  369 (394)
T TIGR00883       294 LAALLAVPLLMALLDSGS---FTLFFFLVLGLAL-IGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIA  369 (394)
T ss_pred             HHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHH-HHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHH
Confidence            443332  222222  33   5666777888888 77778888999999999999999999874 556677888888888


Q ss_pred             HHh----h-HHHHHHHHHHH
Q 013707          165 RFL----S-TTSAFQAATIV  179 (438)
Q Consensus       165 ~~~----~-w~~~f~~~~~~  179 (438)
                      +.+    + |+..++.....
T Consensus       370 g~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       370 AALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             HHHHHHcCcchhHHHHHHHH
Confidence            764    4 77666655444

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09952 shikimate transporter; Provisional

Probab=99.24  E-value=6.9e-10  Score=105.73  Aligned_cols=168  Identities=14%  Similarity=0.115  Sum_probs=108.5

Q ss_pred             HHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHH
Q 013707           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (438)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~   97 (438)
                      +...++........|.+.++.       .+.+......+.....+...++.+..|+++||+|||+.+..+.++..++...
T Consensus       260 ~~~~~~~~~~~~~~~~y~~~~-------~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~  332 (438)
T PRK09952        260 LCELLTMYIVTAFALNYSTQN-------LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFP  332 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            333444455556667776542       2233333334444556667788899999999999999988887665554433


Q ss_pred             HHhcc-cchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHH-HHHhhhhhhHhhhHHh------hH
Q 013707           98 LAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLG-VLSASFVCGTLAARFL------ST  169 (438)
Q Consensus        98 ~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~l~~~~------~w  169 (438)
                      ..... +.+..+.+++..++.++ +.+...+...++++|.+|++.|+.+.+.... +..+|..++|.+.+++      +|
T Consensus       333 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~  411 (438)
T PRK09952        333 FFMALEAQSIFWIVFFSIMLANI-AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSW  411 (438)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            32211 11113444455566677 6677777889999999999999888888544 4557888888888774      37


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccC
Q 013707          170 TSAFQAATIVSMLAAAYMRVFLKDD  194 (438)
Q Consensus       170 ~~~f~~~~~~~~i~~~~~~~~~~~~  194 (438)
                      +.++...++..++..+. .+.+||+
T Consensus       412 ~~~~~~~~~~~~i~~v~-~~~~~~~  435 (438)
T PRK09952        412 HSVAIYLLAGCLISAMT-ALLMKDN  435 (438)
T ss_pred             hHHHHHHHHHHHHHHHH-HHHcccc
Confidence            77777776666555444 3455653

>PRK10133 L-fucose transporter; Provisional

Probab=99.23  E-value=1.6e-09  Score=103.00  Aligned_cols=146  Identities=10%  Similarity=-0.007  Sum_probs=120.0

Q ss_pred             hHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 013707          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (438)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (438)
                      +....+..+...+.........|.+ ++.+|.|+.+.++..+...++..+++ +..|++.||+|+|+.+..+..+..++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~-~~~g~l~dr~G~r~~l~~g~~~~~~~~  105 (438)
T PRK10133         28 FALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIP-IPAGILMKKLSYKAGIITGLFLYALGA  105 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            3444555566666666667777776 66799999999999999999999999 888999999999999999999999998


Q ss_pred             HHhH---hcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHH
Q 013707          328 FICS---ISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  395 (438)
Q Consensus       328 ~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  395 (438)
                      +++.   ..++.+.+.. .++.|++.+...+..+.++.+..|+++++...+..+....+|..++|.+++.+.
T Consensus       106 ~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        106 ALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7753   4556655555 578899999999999999988776666667899999999999999999887765

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.22  E-value=5.3e-10  Score=104.66  Aligned_cols=161  Identities=11%  Similarity=0.112  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHH
Q 013707            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (438)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (438)
                      .++.+.+..++............|.+.+|        .+.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.
T Consensus       206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~  277 (382)
T PRK11128        206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQA--------AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSA  277 (382)
T ss_pred             hHHHHHHHHHHHHHHhHhHHHHHHHHHHH--------CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            34444444555555555555666777653        3555667788888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHH-HHHHhhhhhhHhhhHHh
Q 013707           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL-GVLSASFVCGTLAARFL  167 (438)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~l~~~~  167 (438)
                      +..+++.+.....++   .+.+++..++.|+ +.+...+....++.+. +++++++..+..+ ...++|..+||.++|.+
T Consensus       278 ~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l  352 (382)
T PRK11128        278 ICGVVRWGLMGSTTA---LPWLIVIQILHCG-TFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFL  352 (382)
T ss_pred             HHHHHHHHHHHhhhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988888888888888   8888899999999 8888888888888887 5666788888886 55677888889888875


Q ss_pred             ----hHHHHHHHHHHHHHHH
Q 013707          168 ----STTSAFQAATIVSMLA  183 (438)
Q Consensus       168 ----~w~~~f~~~~~~~~i~  183 (438)
                          ++ ..|+..+.+.++.
T Consensus       353 ~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        353 YQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHhccH-HHHHHHHHHHHHH
Confidence                44 4566666555443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.22  E-value=7.5e-10  Score=105.04  Aligned_cols=177  Identities=16%  Similarity=0.208  Sum_probs=139.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcc--hHh
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK--AML   84 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk--~~l   84 (438)
                      .|++...+++.++..-+.+.+......|..+       +++.+..+...+.-+..+...++++++|++.||+|.|  +++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~-------~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l  352 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATE-------VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTL  352 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            4566666777777777777777777777654       5666667777778888899999999999999999999  888


Q ss_pred             HHHHHHHHHHHHHHHh--------cccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhh
Q 013707           85 TLPLTLSIIPLAILAY--------RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS  156 (438)
Q Consensus        85 ~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  156 (438)
                      ..+++...+..+...+        .++   -+.+++.-++.|+ ..|...+...++.+|..|+++.+..+|++....-..
T Consensus       353 ~~~l~~~~~i~~~g~~G~~~~~~g~~~---~~~f~~~a~~~G~-~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~s  428 (477)
T PF11700_consen  353 LISLILWIIIPLYGLFGFWPSFFGLKS---PWEFWVLAVLIGL-FMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKAS  428 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccCccc---HHHHHHHHHHHHH-HhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            8888877555555444        344   6788889999999 889999999999999999999999999999999999


Q ss_pred             hhhhHhhhHHh-----hHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 013707          157 FVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (438)
Q Consensus       157 ~~~g~~l~~~~-----~w~~~f~~~~~~~~i~~~~~~~~~~~~~  195 (438)
                      ..+||++-+.+     +-|..+....++.++..+ ....+++++
T Consensus       429 s~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~-ll~~v~~~~  471 (477)
T PF11700_consen  429 SWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLI-LLFFVDVEK  471 (477)
T ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH-HHhhccchh
Confidence            99999988875     357788777766554433 345555543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.22  E-value=9.8e-10  Score=105.23  Aligned_cols=122  Identities=16%  Similarity=0.148  Sum_probs=97.9

Q ss_pred             HHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcc----cchHHHH-
Q 013707          267 ASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW----SAWVPYA-  341 (438)
Q Consensus       267 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-  341 (438)
                      ...| ++.+. |+++.+.++..+...++..+++ +..|+++||+|+|+++..+.++.+++.+.+.+.+    +.+..+. 
T Consensus        50 ~~~p-~l~~~-g~s~~~~g~~~~~~~i~~~~~~-~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  126 (452)
T PRK11273         50 LAMP-YLVEQ-GFSRGDLGFALSGISIAYGFSK-FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL  126 (452)
T ss_pred             HhhH-HHHHc-CCCHHHHHHHHHHHHHHHHHHH-hhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHH
Confidence            3444 56666 9999999999999999999999 8889999999999999999998888888777653    3333333 


Q ss_pred             HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhH
Q 013707          342 TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIF  391 (438)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~  391 (438)
                      ..+.|++.+...+.....+.+.+|+++|+++.|+.+....+|..+.+.+.
T Consensus       127 ~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~  176 (452)
T PRK11273        127 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLF  176 (452)
T ss_pred             HHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            46678888877787778888999999999999999999888875544443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.21  E-value=6.2e-10  Score=102.04  Aligned_cols=182  Identities=16%  Similarity=0.142  Sum_probs=150.5

Q ss_pred             cccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcC----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chhhHHH
Q 013707          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH----FNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-GEAKLLS  317 (438)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~  317 (438)
                      .++|.++.++..-+.--++++++...+..|+..+++    +|++++..++..++...-... +++||++||+ |+|+.+.
T Consensus        18 ~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~-i~GG~laDr~LG~~~tI~   96 (498)
T COG3104          18 GQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTP-IIGGWLADRVLGTRRTIV   96 (498)
T ss_pred             CCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHH-HHHHHHHHHhcchhHHHH
Confidence            346778888899999999999999999999998888    999998777777766666666 8889999995 9999999


Q ss_pred             HHHHHHHHHHHHhHhcc--cchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCc--chhHHHHHhhHhhhhhhhhhHhHH
Q 013707          318 LGLFAACINMFICSISW--SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNE--QGKAQGCISGISSFANIVSPLIFS  392 (438)
Q Consensus       318 ~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~~g~~~~g  392 (438)
                      .|.+++.++.++++..+  ....+++ ..++.++.|..-|...+++.|.+|+++  |-..+++..+..++|+.++|.+.+
T Consensus        97 lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~  176 (498)
T COG3104          97 LGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITG  176 (498)
T ss_pred             HHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHH
Confidence            99999999999998884  4444554 677789999999999999999998764  567888888999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhh
Q 013707          393 PLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSFYV  433 (438)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (438)
                      ++.++.        .....|..+++-+..+++..+..+|+.
T Consensus       177 ~~~~~~--------g~~~gF~~aavGm~~gl~~f~~~~r~~  209 (498)
T COG3104         177 LLAINY--------GWHVGFGLAAVGMIIGLVIFLLGRRHV  209 (498)
T ss_pred             HHHHhh--------CHHHHHHHHHHHHHHHHHHHHHccchh
Confidence            998874        334456677777777877777666543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.19  E-value=8.7e-09  Score=99.44  Aligned_cols=145  Identities=13%  Similarity=0.067  Sum_probs=105.8

Q ss_pred             cchhhHHHHHHHH-HHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHH---Hhc-ccchhHHHHHHHHHhhhh
Q 013707           45 ECSLAIYLSGFQQ-AIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAIL---AYR-RSISFFYAYYALRTLTAM  119 (438)
Q Consensus        45 ~~~~s~~~~g~~~-s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~l~~~r~l~G~  119 (438)
                      +.+.+..+.|+.. +...++..++.++.|+++||+|||+.+.++.++.++..+..   +.. ++   .+.+...-+++.+
T Consensus       252 ~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~---~~~l~~~~~l~~~  328 (491)
T PRK11010        252 GVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKN---LYSMGAAVFFENL  328 (491)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHH
Confidence            3466677888887 46668999999999999999999988777666555443322   232 23   4445555666565


Q ss_pred             cchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH----hhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 013707          120 VCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDD  194 (438)
Q Consensus       120 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~~~  194 (438)
                       +.+...+...++..+..+++.+++..++.+...++|..+++.+++.    .||+..|.+.++++++..+... .++++
T Consensus       329 -~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~-~~~~~  405 (491)
T PRK11010        329 -CGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLL-VCRQT  405 (491)
T ss_pred             -HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence             5555566778889999999999999999999999998877666665    4899999988888776655443 34543

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=8e-08  Score=89.08  Aligned_cols=305  Identities=15%  Similarity=0.106  Sum_probs=191.3

Q ss_pred             HHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhcc
Q 013707           57 QAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADN  136 (438)
Q Consensus        57 ~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~  136 (438)
                      +++-.....+++++.+.+.|+.|.|..++++...+..-.....+-++    +.+++...+.|+ |.+..+...-.+++|.
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~----y~~yfssallG~-Gaallw~GqG~ylt~~  130 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNS----YYLYFSSALLGF-GAALLWTGQGGYLTSN  130 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcch----HHHHHHHHHhhh-hHHheecccceehhhc
Confidence            56667778888999999999999999999999999888777666665    678899999999 8898898899999999


Q ss_pred             CCccchhHHHHHHHHHHHhhhhhhHhhhHHh------------hHH-HH-------HHHH---HHHHHHHHHHHH--Hhc
Q 013707          137 ISERQRASAFGILLGVLSASFVCGTLAARFL------------STT-SA-------FQAA---TIVSMLAAAYMR--VFL  191 (438)
Q Consensus       137 ~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~------------~w~-~~-------f~~~---~~~~~i~~~~~~--~~~  191 (438)
                      .++|++.+..++..+....+.++|+.+-..+            +.+ ..       +.+.   +++..+..+-..  .+.
T Consensus       131 st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~  210 (461)
T KOG3098|consen  131 STRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFL  210 (461)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeec
Confidence            9999999999999999888888886554321            111 11       1111   111111100000  111


Q ss_pred             ccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHH
Q 013707          192 KDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLY  271 (438)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (438)
                      |.+......+                       . .+....+..+...+.++ ++++..+....+..++.........|.
T Consensus       211 p~~~~~~~~~-----------------------~-~~~~~~~~l~~~~~l~~-~~~ml~L~~~f~~tG~~~Sf~~~iypt  265 (461)
T KOG3098|consen  211 PSKDVVNCKS-----------------------S-SETSFSELLKLTFKLLK-TPKMLLLFPFFFYTGLETSFWISIYPT  265 (461)
T ss_pred             Cccchhhhhh-----------------------h-ccccHHHHHHHHHHHhc-CHhHHHHHHHHHHHHHHHHHHHhccch
Confidence            1111100000                       0 00111123344444444 455555555555555544444555555


Q ss_pred             HHHhH--cCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHh---hchhhHHHHHHHHHHHHHHHhHhcc-----------
Q 013707          272 FLKAQ--FHFNKNQ-FADLMLIAGLAGTISQLLFMPLLAPI---LGEAKLLSLGLFAACINMFICSISW-----------  334 (438)
Q Consensus       272 ~~~~~--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----------  334 (438)
                      .+.-.  .+.+... .+......+.+.++++ ...+.+.||   +|+++++.++..+..++.++.....           
T Consensus       266 ~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g-~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~  344 (461)
T KOG3098|consen  266 CISFTRKLGSNTTYLIAIYSIGIGLGEVIGG-LDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDS  344 (461)
T ss_pred             hhhhhhhccCcchhHHHHHHHHHhHHHHHHH-HHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcc
Confidence            43222  2333333 3444455566666655 555566654   5777888888877777766655421           


Q ss_pred             -------cc-hHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHH
Q 013707          335 -------SA-WVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSP  393 (438)
Q Consensus       335 -------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~  393 (438)
                             +. ...++..+.|++........+.++.+.. +++|.++.++.-.-+.++..++-.....
T Consensus       345 ~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  345 PPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             cccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence                   11 1122257788889999999999999888 5888899998888888777766555443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.17  E-value=3.3e-09  Score=101.01  Aligned_cols=129  Identities=11%  Similarity=0.019  Sum_probs=97.0

Q ss_pred             hHHHHHHHHhHcC---CChhHH---HHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccch--
Q 013707          266 QASFLYFLKAQFH---FNKNQF---ADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAW--  337 (438)
Q Consensus       266 ~~~~~~~~~~~~g---~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  337 (438)
                      ..+..+++.++++   .+..+.   +..++...++..+++ ++.|+++||+|||+.+..+..+.+++.+..++.++..  
T Consensus        41 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~-~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~  119 (432)
T PRK10406         41 YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGG-WLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETI  119 (432)
T ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhH
Confidence            4444455555553   444433   334444555555777 8889999999999999999999999999988877643  


Q ss_pred             ------HHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHH
Q 013707          338 ------VPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  395 (438)
Q Consensus       338 ------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  395 (438)
                            .+.+ -++.|++.+...|...+++.|..|+++||+..+........|..+++.+...+.
T Consensus       120 ~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~  184 (432)
T PRK10406        120 GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ  184 (432)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  1222 467899999999999999999999999999999888777777777776654443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.17  E-value=2e-08  Score=91.47  Aligned_cols=322  Identities=15%  Similarity=0.100  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhh
Q 013707           54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV  133 (438)
Q Consensus        54 g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i  133 (438)
                      |.+.-+.-++.++..+.+.++.+|+..+.=.....++..++.++.+++++   .+.-+++-.+.++ ++|.......++.
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~---v~~~l~Gv~las~-ssg~GE~tfL~lt  137 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPS---VWVRLLGVVLASL-SSGLGEVTFLSLT  137 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccc---hhHHHHHHHHHhh-hhhhhHHHHHHHH
Confidence            45666667788888888888999988665556667788889999999998   8888888888898 7777776666664


Q ss_pred             hccCCccchhHHHHHHHHHHHhhhhhhHhhhHH---h--hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccc
Q 013707          134 ADNISERQRASAFGILLGVLSASFVCGTLAARF---L--STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPII  208 (438)
Q Consensus       134 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~---~--~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (438)
                      . .+++    ...+.++++.+.+.++|+..-..   .  +.|..+.+...+.++..+..++.+|+++..+..++...+ .
T Consensus       138 ~-~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~-~  211 (402)
T PF02487_consen  138 H-FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESE-D  211 (402)
T ss_pred             H-hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCC-C
Confidence            4 4443    34666777777777777643322   2  347777777766655544445556654332211111000 0


Q ss_pred             hhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhh-HHHHHHH-HhHcCCChhHHHH
Q 013707          209 TEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQ-ASFLYFL-KAQFHFNKNQFAD  286 (438)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~g~~~~~~~~  286 (438)
                      +. +++...  ++....+.+...+..+++-++..   |.+...++-.+...+..+..+ ...|... .....-...+..+
T Consensus       212 ~~-~~~~~~--~~~~~~~~~~~~~~~~~~k~~~~---k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~  285 (402)
T PF02487_consen  212 EA-EDDLLE--SETSESKPDSSSKLSFKEKLKRL---KPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRW  285 (402)
T ss_pred             cc-cccccc--cccccccccccchhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHH
Confidence            00 000000  00000111111112233322222   222223333333333443332 2223222 1111112233445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH---hHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhh
Q 013707          287 LMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFI---CSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSK  362 (438)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  362 (438)
                      ....+.++..+++.-. ..+  |+++.+++.+-..+..+.+++   +-+.++.|...+ ++..|+..|..+......+.+
T Consensus       286 Y~~~YQ~GVFISRSS~-~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~  362 (402)
T PF02487_consen  286 YQLLYQLGVFISRSSL-PFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISE  362 (402)
T ss_pred             HHHHHHHHHhhhhcce-eee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            5555555555544111 111  333333322222222222222   122345555554 567789999999988888999


Q ss_pred             cCCCCcchhHHHHHhhHhhhhhhhhhHhHHHH
Q 013707          363 QVGPNEQGKAQGCISGISSFANIVSPLIFSPL  394 (438)
Q Consensus       363 ~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l  394 (438)
                      ..|+++|.-++|........|..++..++-++
T Consensus       363 ~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  363 EVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             cCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999888888877665443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.16  E-value=2.7e-10  Score=90.09  Aligned_cols=107  Identities=20%  Similarity=0.203  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCc
Q 013707          290 IAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNE  368 (438)
Q Consensus       290 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (438)
                      ...++..++. +..+++.||++||+.+..+.....++.+.....++.+.... ..+.+++.+...+...++..|..|+++
T Consensus         6 ~~~~~~~~~~-~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880         6 GYALGQLIYS-PLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             eehhHHHHHH-hhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            3456666777 78889999999999999998888888887777777665555 577788888888999999999999999


Q ss_pred             chhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          369 QGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       369 ~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      |+++.+..+....++..++|.+.+.+.+.
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  113 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGGVLAQF  113 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHHHHhcc
Confidence            99999999999999999999999998764

>PTZ00207 hypothetical protein; Provisional

Probab=99.15  E-value=4.3e-09  Score=101.51  Aligned_cols=124  Identities=8%  Similarity=0.101  Sum_probs=96.4

Q ss_pred             HHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhc------ccchHHHH-H
Q 013707          270 LYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS------WSAWVPYA-T  342 (438)
Q Consensus       270 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~  342 (438)
                      ...+++.+|+|..+.+.+.+.... ....+ +..|++.||+|+|+++.++.++..++.++.++.      .+.+.+.+ .
T Consensus        50 s~~L~~~lgls~~~l~~i~svg~~-~g~~~-lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r  127 (591)
T PTZ00207         50 SGAMQARYNLTQRDLSTITTVGIA-VGYFL-LPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYN  127 (591)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHH-HHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHH
Confidence            344567799999999988766333 33445 567999999999999999999999999998886      34555544 4


Q ss_pred             HHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          343 TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      .+.|++.+...+.....+.+.+| ++||++.|+......+|.++.+.+...+++
T Consensus       128 ~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        128 GLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67788888778888888888887 889999999999999999865555554443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.15  E-value=3.2e-09  Score=100.14  Aligned_cols=142  Identities=14%  Similarity=0.130  Sum_probs=112.2

Q ss_pred             HHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----chhh-HHHHHHHHHHH
Q 013707          252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-----GEAK-LLSLGLFAACI  325 (438)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~-~~~~~~~~~~~  325 (438)
                      +...+..+.........+|.|++++ |+|.+++|.+......  .+.. ++.|+++||+     |||| .+..+....++
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ig~~~~~~~~--~~~~-~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l   80 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVE-GLDIQTIGFFSLVGQA--YIFK-FLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA   80 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH--HHHH-HHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence            4455666677777788899999985 9999999998665554  4666 7888999999     6765 67888888877


Q ss_pred             HHHHhHhccc---chHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          326 NMFICSISWS---AWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       326 ~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      +...+.+.++   .+.+.. .++.+.+.....+...+++.|..|+|+|+++.++......+|..+++.+.+.+.+.
T Consensus        81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~  156 (402)
T PRK11902         81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR  156 (402)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence            7777766532   333333 34556777778899999999999999999999999999999999999999888774

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.13  E-value=2.7e-09  Score=103.28  Aligned_cols=117  Identities=9%  Similarity=-0.068  Sum_probs=98.4

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhc---------ccc---hHHHH-HHH
Q 013707          278 HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS---------WSA---WVPYA-TTA  344 (438)
Q Consensus       278 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~-~~~  344 (438)
                      +.++.+.++..+...++..+++ ++.|+++||+|||+.+..+..+..++.+..++.         ++.   +.++. -++
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~-~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l  129 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGG-ALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII  129 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHH
Confidence            8888999999999999999999 888999999999999999999888887766652         111   12223 477


Q ss_pred             HHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHH
Q 013707          345 FSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  395 (438)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  395 (438)
                      .|++.+...+...+++.|.+|+++||++.++.+....+|..+++.+.+.+.
T Consensus       130 ~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~  180 (479)
T PRK10077        130 GGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIA  180 (479)
T ss_pred             HhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999999999999988877665554

>TIGR00901 2A0125 AmpG-related permease

Probab=99.13  E-value=3.6e-09  Score=98.15  Aligned_cols=160  Identities=11%  Similarity=0.080  Sum_probs=111.4

Q ss_pred             hhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----chhhH-HHHHHHHHHHHHHHhHhccc--
Q 013707          264 GMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-----GEAKL-LSLGLFAACINMFICSISWS--  335 (438)
Q Consensus       264 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~--  335 (438)
                      ......|.+.+| .|+|.++.|..... .+...+ . ++.|++.||+     |||+. +..+.+..++....+.+..+  
T Consensus         6 ~~~~~~~~~~~~-~g~s~~~~g~~~~~-~~~~~~-~-~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~   81 (356)
T TIGR00901         6 LVGNTLPYWLRS-KNVSLKTIGFFSLV-GLPYSL-K-FLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST   81 (356)
T ss_pred             hHHhHHHHHHHH-cCCCHHHHHHHHHH-HHHHHH-H-HHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence            345567888877 69999999998644 444443 5 7888999997     78775 56677777777666666543  


Q ss_pred             -chHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCCCCCchHHH
Q 013707          336 -AWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIM  413 (438)
Q Consensus       336 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~  413 (438)
                       .+.... ..+.+.+.....+...+++.|.+|+|+|+++.|+......+|..+++.+.+.+.+..+.+....+.....+.
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~  161 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFF  161 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHH
Confidence             222222 345566777778999999999999999999999999999999999999999988775422111111233455


Q ss_pred             HHHHHHHHHHHHHH
Q 013707          414 CIGLASVRAFTYEL  427 (438)
Q Consensus       414 ~~~~~~~~~~~~~~  427 (438)
                      +.+++.++.....+
T Consensus       162 i~ai~~l~~~~~~~  175 (356)
T TIGR00901       162 WTALLILPGLLVTL  175 (356)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555444444

>TIGR00896 CynX cyanate transporter

Probab=99.13  E-value=2.3e-09  Score=99.37  Aligned_cols=131  Identities=15%  Similarity=0.132  Sum_probs=107.4

Q ss_pred             chhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHH-
Q 013707          263 GGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-  341 (438)
Q Consensus       263 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  341 (438)
                      ......+|.+.++ +|+|+.+.++..+...++..++. +..|++.||+|+|+.+..+.....++.+.. ..++.+.... 
T Consensus        17 ~~~~~~lp~l~~~-~~~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~   93 (355)
T TIGR00896        17 TSVGPLLPQIRSA-LGMSFSVAGLLTALPVLCFAVLA-PLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAG   93 (355)
T ss_pred             ccCcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence            3445566776665 89999999999999999999999 888999999999999999888877777666 5555555444 


Q ss_pred             HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          342 TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      .++.+++.+...+.....+.|..| ++|+++.|..+....+|..+++.+.+.+.+.
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~  148 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQH  148 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            466777777777777777888776 6899999999999999999999999988775

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.12  E-value=3.8e-09  Score=98.32  Aligned_cols=179  Identities=15%  Similarity=0.205  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHH
Q 013707            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (438)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (438)
                      .+...++..++...+.+.+....+.|.++.   +    +.+....|.+.++..++-++.-...+++..|+|.|+++.++.
T Consensus       208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~---g----g~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~  280 (400)
T PF03825_consen  208 RFLVFLLAAFLIGISHAAYYTFFSIYLQEL---G----GYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLAL  280 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---c----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            455566677778888888888888888754   1    133345577777778888888889999999999999999999


Q ss_pred             HHHHHHHHHHHhc-ccchh-HHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHH-HHhhhhhhHhhhH
Q 013707           89 TLSIIPLAILAYR-RSISF-FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGV-LSASFVCGTLAAR  165 (438)
Q Consensus        89 ~~~~~~~~~~~~~-~~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~l~~  165 (438)
                      +..++=..+.+.. ++... +........++|+ +-+....+...++.+..|++.|+++.++++.. .++|..+|..++|
T Consensus       281 ~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~-tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG  359 (400)
T PF03825_consen  281 VAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGL-TFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGG  359 (400)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999998887 44111 1223444667999 88999999999999999999999999998864 6899999999998


Q ss_pred             Hh----------hHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 013707          166 FL----------STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (438)
Q Consensus       166 ~~----------~w~~~f~~~~~~~~i~~~~~~~~~~~~~  195 (438)
                      ++          .|...+.+.+.+.++..++.+++.||++
T Consensus       360 ~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~  399 (400)
T PF03825_consen  360 WLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH  399 (400)
T ss_pred             HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            74          3455666677766666666666666653

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.12  E-value=2e-09  Score=101.14  Aligned_cols=164  Identities=10%  Similarity=0.032  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHH-HHHHHHhhhhcccccccCcchHhHHHH
Q 013707           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIG-LGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (438)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~-l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (438)
                      ++......++...+........+.+.+        |.+.+..+.|++..... ....++.++.|++.||+|+|+.+..+.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~--------~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~  281 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLV--------DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGV  281 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHH--------hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            344444555555656666666777765        34666778898887775 466677889999999999999998877


Q ss_pred             HHHHHHHHHHHh------cccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCc-cchhHHHHHHHHHHHhhhhhhH
Q 013707           89 TLSIIPLAILAY------RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-RQRASAFGILLGVLSASFVCGT  161 (438)
Q Consensus        89 ~~~~~~~~~~~~------~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~  161 (438)
                      .+.++.......      .++   ...+.....+.++ +.+...+...+...+..++ +++++.++..+...++|..+||
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~  357 (390)
T TIGR02718       282 GLAGSLALLWFAQAAFWLAPG---IAVAWSCSAFGSL-ITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIAS  357 (390)
T ss_pred             HHHHHHHHHHHHHHHcccCCc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHH
Confidence            665333222221      122   3344455556666 5666767777887777776 8899999999999999999999


Q ss_pred             hhhHHh----hHHHHHHHHHHHHHHHHH
Q 013707          162 LAARFL----STTSAFQAATIVSMLAAA  185 (438)
Q Consensus       162 ~l~~~~----~w~~~f~~~~~~~~i~~~  185 (438)
                      .+++.+    |++..|+..+.+.++..+
T Consensus       358 ~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       358 SIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            998864    778888888776655433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=99.11  E-value=6e-09  Score=90.47  Aligned_cols=350  Identities=15%  Similarity=0.075  Sum_probs=214.6

Q ss_pred             HHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhH
Q 013707           65 LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRAS  144 (438)
Q Consensus        65 ~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~  144 (438)
                      .+.-.+.=.+.|..-.|++++.-.+.......+..+.++   .+.+=+.-+..|. . .+...+.++++-+..+++++.+
T Consensus        56 Lv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~s---V~~mQvlE~FyG~-~-tAaEIAYysYIYs~Vd~~~Yqr  130 (433)
T KOG3810|consen   56 LVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPS---VKAMQVLEFFYGP-A-TAAEIAYYSYIYSKVDPEMYKR  130 (433)
T ss_pred             HHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCC---chheeeehhhcCh-H-HHHHHhhhheeeeecCHHHHHH
Confidence            333344445889998999999888877888888889999   8888888899998 4 4455689999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhHhhhHHh------hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCC
Q 013707          145 AFGILLGVLSASFVCGTLAARFL------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQN  218 (438)
Q Consensus       145 ~~~~~~~~~~~g~~~g~~l~~~~------~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (438)
                      +.+...++.-.|...|..++..+      ++...=.+......++ .....++|..+++.-.+.+.++..   ..   +.
T Consensus       131 vt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia-~~~A~fLP~v~rSl~f~~~~~~~~---v~---~~  203 (433)
T KOG3810|consen  131 VTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIA-VLLALFLPRVKRSLYFHRLEDKIS---VG---DL  203 (433)
T ss_pred             HHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHH-HHHHhhCCCCchhhhhhcccccce---ec---cc
Confidence            99999999999888888888764      2232222332222222 334456776654322111111100   00   00


Q ss_pred             CCCCCCCccccccCCchhH---HHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcC-CChhHHHHHHHHHHHH
Q 013707          219 ESNSPVKIPVCKKIPSIRD---LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH-FNKNQFADLMLIAGLA  294 (438)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~  294 (438)
                      ++..+..+.....+..++.   -+....+||.+....+=..+...++..+..+....-++... -.....|..-++..+.
T Consensus       204 e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlL  283 (433)
T KOG3810|consen  204 EEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLL  283 (433)
T ss_pred             hhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHH
Confidence            0000000000000011111   12234467777776666677777777777666666655421 1122236666677777


Q ss_pred             HHHHHHHHHHHHHHhhchh--hHHHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchh
Q 013707          295 GTISQLLFMPLLAPILGEA--KLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGK  371 (438)
Q Consensus       295 ~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  371 (438)
                      ++++. +..|.+.-++.|.  .++.++.+..+...+.+...++.|..++ -.++........+.....+.+..+.|.-|-
T Consensus       284 Ga~~~-~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gL  362 (433)
T KOG3810|consen  284 GAIAA-LAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGL  362 (433)
T ss_pred             HHHHH-HHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhhee
Confidence            77777 6777765444443  3566667777777778888888888888 456667777777777777888888899999


Q ss_pred             HHHHHhhHhhhhhhhhhHhHHHHHHHHh---cCCCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 013707          372 AQGCISGISSFANIVSPLIFSPLTALFL---SKGAPFNFPGFSIMCIGLASVRAFTYELLLS  430 (438)
Q Consensus       372 ~~g~~~~~~~~g~~~g~~~~g~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (438)
                      .+|++..+.-+-+.+-..+   ..|..+   +....+...+..|+..+++.++.....+...
T Consensus       363 vFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~  421 (433)
T KOG3810|consen  363 VFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLMC  421 (433)
T ss_pred             eeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHHh
Confidence            9998877765444443322   233211   1222333445567777777777765544433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.11  E-value=9.6e-11  Score=105.81  Aligned_cols=149  Identities=11%  Similarity=0.136  Sum_probs=123.6

Q ss_pred             hHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 013707          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (438)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  327 (438)
                      +..+.+...+...-.+..-..++ =.++.+|.++...|++.....+..++.+ ++.|.+.||+.|++++.+|..+..++.
T Consensus        35 l~il~~vnlmny~Dr~~iagv~~-~v~~~fni~~s~~Gll~~vf~v~~~i~s-Pl~gyLadryNR~~v~~vG~~iW~~Av  112 (493)
T KOG1330|consen   35 LVILCLVNLMNYADRYTIAGVLK-EVQTYFNISDSELGLLQTVFIVVFMIAS-PLFGYLADRYNRKRVIAVGIFIWTLAV  112 (493)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhH-HHHHhcCCCchhccchhHHHHHHHHHHH-HHHHHHHhhcCcceEEeeHHHHHHHHH
Confidence            33344444444443333333222 2345589999999999999999999999 889999999999999999999999999


Q ss_pred             HHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          328 FICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       328 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      +..++..+.|.+.+ -.+.|+|.+...|..+++++|.+|+++|++++++.+.....|..+|-..++.+.++.
T Consensus       113 ~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~  184 (493)
T KOG1330|consen  113 FASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT  184 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence            99999988887777 589999999999999999999999999999999999999999999988888777664

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=7.3e-10  Score=98.09  Aligned_cols=144  Identities=16%  Similarity=0.170  Sum_probs=125.3

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHH
Q 013707          277 FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPS  355 (438)
Q Consensus       277 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  355 (438)
                      .+-+..++|++++...+...+.+ ++.|.+.||+|+|..+++|+..+..+.+++++..+.+..++ -.+.|++.++....
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvn-p~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~ts  179 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVN-PFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTS  179 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhc-ccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhh
Confidence            45567788999999999999999 88899999999999999999999999999999998887766 58999999999999


Q ss_pred             HHHHHhhcCCCCc-chhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 013707          356 FRSIVSKQVGPNE-QGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLL  429 (438)
Q Consensus       356 ~~~~~~~~~~~~~-~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (438)
                      ..+++.|.+|+|. |++++|+.-....+|-.+||+++|.+||..        ....+|++.++++++-..+.+++
T Consensus       180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~--------Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA--------GKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc--------CCcCcHHHHHHHHHHHHHHHHhe
Confidence            9999999999875 699999999999999999999999999974        34556777777776666555443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.09  E-value=5.9e-10  Score=110.16  Aligned_cols=136  Identities=13%  Similarity=0.157  Sum_probs=113.1

Q ss_pred             chhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcc--------
Q 013707          263 GGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW--------  334 (438)
Q Consensus       263 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  334 (438)
                      .++....-.-++++++++..+.|++.+...++..+.. +..+++.||.+|++.+.++.++.+++.+++++.+        
T Consensus        49 ~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~-i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~  127 (633)
T TIGR00805        49 NGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLI-IFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSY  127 (633)
T ss_pred             HHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHH-HHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccc
Confidence            3333333334556699999999999999999999988 7778999999999999999999999998887652        


Q ss_pred             -----------------------------------------c-ch-HHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcch
Q 013707          335 -----------------------------------------S-AW-VPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQG  370 (438)
Q Consensus       335 -----------------------------------------~-~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  370 (438)
                                                               + .+ .+++ -++.|++.+...+...+++.|.+|+++|+
T Consensus       128 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~  207 (633)
T TIGR00805       128 STTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSP  207 (633)
T ss_pred             cccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccH
Confidence                                                     0 12 2222 47889999999999999999999999999


Q ss_pred             hHHHHHhhHhhhhhhhhhHhHHHHHHHHh
Q 013707          371 KAQGCISGISSFANIVSPLIFSPLTALFL  399 (438)
Q Consensus       371 ~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  399 (438)
                      ...|+.+....+|..+|+.+++.+.+.+.
T Consensus       208 ~~~~i~~~~~~iG~~lG~llgg~l~~~~~  236 (633)
T TIGR00805       208 LYIGILESIAVFGPAFGYLLGSFCLQIYV  236 (633)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccc
Confidence            99999999999999999999999987643

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.09  E-value=2.4e-09  Score=114.88  Aligned_cols=162  Identities=12%  Similarity=0.063  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHH-HHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHH
Q 013707           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIY-LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (438)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (438)
                      ++...+..++...........+|.+..+       +++.+.. ..|++.+...++.++++++.|+++||+++|+.+.++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~  306 (1146)
T PRK08633        234 LWLAIIGLSYFWFISQLAQANFPAYAKE-------VLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGA  306 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHH
Confidence            3333344444444444555667777654       2344445 7799999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh-
Q 013707           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (438)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-  167 (438)
                      ++.+++.++..+..+   .+.+++..++.|+ +.+...+...+++.+..|+++|+++++..+....+|..+++.+++.+ 
T Consensus       307 ~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        307 LGLALSLFLLPTAPS---LASVLVLFFLFGF-SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             HHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888887777   7788888899999 77888888899999999999999999999999999988887777654 


Q ss_pred             ----hHHHHHHHHHHHHHH
Q 013707          168 ----STTSAFQAATIVSML  182 (438)
Q Consensus       168 ----~w~~~f~~~~~~~~i  182 (438)
                          ++...|++.+.+.++
T Consensus       383 ~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        383 GLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HhccCHHHHHHHHHHHHHH
Confidence                344455555444333

>TIGR00898 2A0119 cation transport protein

Probab=99.08  E-value=3.2e-09  Score=103.39  Aligned_cols=135  Identities=18%  Similarity=0.153  Sum_probs=103.9

Q ss_pred             HHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCC
Q 013707           59 IIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS  138 (438)
Q Consensus        59 ~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~  138 (438)
                      ...+....+.++.+++.||+|||+.+.++.++.+++.++..+.++.. .+...+.-++.++ +.+...+..+.+..|.+|
T Consensus       363 ~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDL-YFLRTALAVLGKF-GITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHH-HHHHHHHHHHHHhccccc
Confidence            44566777888899999999999999999999888888888776521 2344444555555 556666788899999999


Q ss_pred             ccchhHHHHHHHHHHHhhhhhhHhhhHH--hhHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 013707          139 ERQRASAFGILLGVLSASFVCGTLAARF--LSTTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (438)
Q Consensus       139 ~~~r~~~~~~~~~~~~~g~~~g~~l~~~--~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~  196 (438)
                      ++.|+.++|+.+....+|.+++|.+.+.  .++..++++.+...++..+. .+++||++.
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lpet~~  499 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGIL-TLFLPETKG  499 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHcCcCCCC
Confidence            9999999999999999999999998873  24566777777766555444 456787654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.08  E-value=1.3e-09  Score=96.02  Aligned_cols=117  Identities=14%  Similarity=0.031  Sum_probs=100.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHH
Q 013707          278 HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSF  356 (438)
Q Consensus       278 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  356 (438)
                      +.+....|++-+.+++...+.+ ...|.++||+|||.++..|.+..++..++.+.+.+...+.. -++.|+..+. ....
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS-~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~  141 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISS-PLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVI  141 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhh-hhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHH
Confidence            3455667889999999999998 88899999999999999999999999999998888844444 3555665554 4557


Q ss_pred             HHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          357 RSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       357 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      .++++|.+++|+|+.+++..++..++|-++||.++|++.+
T Consensus       142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            7999999999999999999999999999999999999988

>PRK15075 citrate-proton symporter; Provisional

Probab=99.08  E-value=7.8e-09  Score=98.54  Aligned_cols=147  Identities=14%  Similarity=0.045  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHH-HHHH-----HHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 013707          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLM-LIAG-----LAGTISQLLFMPLLAPILGEAKLLSLGLF  321 (438)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  321 (438)
                      .....+..++...-........|...++ ++.++.+.+... +...     +...+++ +..|++.||+|||+.+..+..
T Consensus        17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ig~-~~~G~l~Dr~Grr~~l~~~~~   94 (434)
T PRK15075         17 ILRVTSGNFLEMFDFFLFGFYATAIAKT-FFPAGNEFASLMLTFAVFGAGFLMRPLGA-IVLGAYIDRVGRRKGLIVTLS   94 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHHHHHHhhhHH-HHHHHHhhhhchHHHHHHHHH
Confidence            3444555566666666666666655554 788777654332 2211     1123455 777999999999999999999


Q ss_pred             HHHHHHHHhHhcccchH--------HHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHH
Q 013707          322 AACINMFICSISWSAWV--------PYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFS  392 (438)
Q Consensus       322 ~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g  392 (438)
                      +..++.++..+.++.+.        +.+ -++.|++.+...+....++.|.+|+++|+++.++.+...++|..+++.+++
T Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~  174 (434)
T PRK15075         95 IMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGY  174 (434)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998887653        222 467788888888888899999999999999999999999999888888877


Q ss_pred             HHHH
Q 013707          393 PLTA  396 (438)
Q Consensus       393 ~l~~  396 (438)
                      .+..
T Consensus       175 ~l~~  178 (434)
T PRK15075        175 LLNQ  178 (434)
T ss_pred             HHHH
Confidence            7654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.08  E-value=1.9e-09  Score=96.72  Aligned_cols=176  Identities=13%  Similarity=0.171  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      ++++...+++.++..=+.+.....-..+.       ..+++++..+..++...-.+..+++++++|++.||+|.|+++..
T Consensus       251 ~~~i~~FLiA~~~~~DGv~til~~~~~fg-------~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~  323 (438)
T COG2270         251 RKNLVLFLIARFFYIDGVNTILAMGGVFG-------AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMI  323 (438)
T ss_pred             ccchHHHHHHHHHHHhhHHHHHHHHHHHH-------HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehH
Confidence            34555556666665555555554555553       34778888888998888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH
Q 013707           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (438)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (438)
                      ++++..+.++...+...   -..+.+.-.+.|. ..|..+..+.++..+..|+++-++.+|+++.....+..+||.+-+.
T Consensus       324 ~lvi~~~~~~~~~~~~~---~~~f~i~gll~g~-s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v  399 (438)
T COG2270         324 GLVILSIAALYLIFLEG---ELDFWILGLLVGT-SLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAV  399 (438)
T ss_pred             HHHHHHHHHHHHHHccc---cHHHHHHHHHHHH-hcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHH
Confidence            99998888887777666   4556677788898 7889999999999999999999999999999999999999998877


Q ss_pred             h-----hHHHHHHHHHHHHHHHHHHHHHhcccC
Q 013707          167 L-----STTSAFQAATIVSMLAAAYMRVFLKDD  194 (438)
Q Consensus       167 ~-----~w~~~f~~~~~~~~i~~~~~~~~~~~~  194 (438)
                      +     +-|..+....++..+. +.....+|++
T Consensus       400 ~t~iTg~~r~g~~~i~vll~iG-l~~L~~v~~~  431 (438)
T COG2270         400 ITQITGSSRAGVLSIIVLLLIG-LLLLLRVKVP  431 (438)
T ss_pred             HHHHhcchhhHHHHHHHHHHhh-HhhEEeecCC
Confidence            5     3466665555443333 3334455554

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.06  E-value=1.5e-08  Score=92.85  Aligned_cols=183  Identities=11%  Similarity=0.057  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHH
Q 013707            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (438)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (438)
                      |+++.+.+........+.......|.|..+..    ++.+.+....|++.+..-+.-.+.-.+..++.+|+|.|+.++++
T Consensus       220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f----~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Llla  295 (412)
T PF01306_consen  220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFF----QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLA  295 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHH
Confidence            34444333333332333444445677766542    34456667899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHH-HHHHHhhhhhhHhhhHH
Q 013707           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGIL-LGVLSASFVCGTLAARF  166 (438)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~l~~~  166 (438)
                      ..+.++=...++++++   .+.+.+.+.+.|+ --+.......-|+++.+|+|..++...+. +.+.++|..+.+.++|.
T Consensus       296 g~i~~iRi~~~~~~~~---~~~i~~~klLH~~-e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~  371 (412)
T PF01306_consen  296 GVIMAIRIIGSGFATN---PWVISLIKLLHAL-EFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGY  371 (412)
T ss_dssp             HHHHHHHHHHHHT--S---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcc---hHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence            9999999999999999   9999999999999 78888999999999999988877777764 57778888888877776


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 013707          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPND  198 (438)
Q Consensus       167 ----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~  198 (438)
                          +|.+..|++.+.+.+...++..+.++++++..
T Consensus       372 lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~~  407 (412)
T PF01306_consen  372 LYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQI  407 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSSTT
T ss_pred             hHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCccc
Confidence                48888999999988888888888888765543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.06  E-value=1.5e-08  Score=98.35  Aligned_cols=143  Identities=15%  Similarity=0.034  Sum_probs=110.6

Q ss_pred             HHHHHHHhhhchhhHHHHHHHHhH----cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 013707          253 VVAFFSGLSEGGMQASFLYFLKAQ----FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMF  328 (438)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  328 (438)
                      +..+..+.-........|..-.+.    .+.+..+.+++.+...++.+++. ++.++++||+|||+.+..+.++..++.+
T Consensus        23 ~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~-~~~g~l~d~~Grr~~~~~~~~~~~v~~~  101 (502)
T TIGR00887        23 VGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQ-LFFGWLADKLGRKRVYGMELIIMIIATV  101 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            333444444444444455443321    23455667888999999999998 8889999999999999999888888887


Q ss_pred             HhHhccc------chHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          329 ICSISWS------AWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       329 ~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      +..+..+      .+.+.+ -++.|++.+...+....++.|.+|+++||++.++.+....+|..+++.+...+..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~  176 (502)
T TIGR00887       102 ASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLA  176 (502)
T ss_pred             HHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776554      233333 5788999999999999999999999999999999999999999999988877654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.06  E-value=5.2e-09  Score=93.92  Aligned_cols=149  Identities=15%  Similarity=0.082  Sum_probs=114.0

Q ss_pred             chhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 013707          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (438)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  325 (438)
                      |+++...+........+ .....+...+++.+|+|+.|.+++.+...+.+.+.+ +..+.+.||+|.|++...+.++..+
T Consensus        14 ~~L~~S~~af~v~F~VW-~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallR-l~~g~l~drfGgR~~~~~s~~l~~I   91 (417)
T COG2223          14 RNLWLSTLAFDVGFMVW-TLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLR-LPYGFLTDRFGGRKWTILSMLLLLI   91 (417)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHH-HHHHhhhcccCchHHHHHHHHHHHH
Confidence            44444443333333333 333444455557799999999999999999999999 7778999999999999999999999


Q ss_pred             HHHHhHhcccch---HHHHH-HHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          326 NMFICSISWSAW---VPYAT-TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       326 ~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      -.+...++.+.+   .++.. .+.|+ .+..+......+++.+|||++|.++|++. .+++|..+...+...+....
T Consensus        92 P~~~~~~a~~~~~~~~ll~~gll~G~-~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~  166 (417)
T COG2223          92 PCLGLAFAVTYPSTWQLLVIGLLLGL-AGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF  166 (417)
T ss_pred             HHHHHHHHccCCchHHHHHHHHHHhc-ccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence            988888876554   55543 33443 34456667788899999999999999998 99999999988888887764

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.05  E-value=3.7e-09  Score=101.04  Aligned_cols=149  Identities=15%  Similarity=0.154  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHH
Q 013707            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (438)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (438)
                      |.++.+.+..++...+........+.+.++.       .+ +....+++.+...++..++.+++|+++||+|||+.+..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~  293 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYV-------LG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGG  293 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeee-------cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            4445555555555555554444444443321       12 223456777788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCC-------ccchhHHHHHHHHHHHhhhhhh
Q 013707           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-------ERQRASAFGILLGVLSASFVCG  160 (438)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g  160 (438)
                      ..+.+++.+...+.++  ..+.+++..++.|+ +.+...+...++++|..|       ++++|...|+.+....+|..+|
T Consensus       294 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg  370 (437)
T TIGR00792       294 ILLMVLGYLIFFFAGS--NLPLILVLIILAGF-GQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALA  370 (437)
T ss_pred             HHHHHHHHHHHHHcch--hHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHH
Confidence            8888888777766542  15666777788888 778888889999999876       4567899999999999999999


Q ss_pred             HhhhHHh
Q 013707          161 TLAARFL  167 (438)
Q Consensus       161 ~~l~~~~  167 (438)
                      +.+.+.+
T Consensus       371 ~~i~g~l  377 (437)
T TIGR00792       371 GFLVGLI  377 (437)
T ss_pred             HHHHHHH
Confidence            8887763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.05  E-value=2.4e-09  Score=103.15  Aligned_cols=121  Identities=12%  Similarity=0.052  Sum_probs=105.6

Q ss_pred             HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhc--ccchHHHH-HHHHHhhhhhh
Q 013707          276 QFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS--WSAWVPYA-TTAFSVLVVFA  352 (438)
Q Consensus       276 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~  352 (438)
                      ++++++.+.|.+.+...++..+++ +..|++.||+|+|+.+..+.++..++.++..+.  .+.+..++ -++.|++.+..
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~  148 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQ-IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSV  148 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHH-cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccc
Confidence            478999999999999999999999 888999999999999999988888777666443  33444444 57889999999


Q ss_pred             HHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          353 TPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       353 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      .|....++.+.+|+++|+++.|+.+....+|..++|.+.+.+.+.
T Consensus       149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~  193 (465)
T TIGR00894       149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES  193 (465)
T ss_pred             hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999988765

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.01  E-value=6.1e-09  Score=111.48  Aligned_cols=160  Identities=13%  Similarity=0.009  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHH
Q 013707            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (438)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (438)
                      .++...+..+...+..+.....+|.|.++.       ++.+....|++.+.+.++.++++++.|+++|+.++++.+..+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-------~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~  298 (1140)
T PRK06814        226 RIWLAILGISWFWLVGAVVLSQLPLLAKET-------LGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGA  298 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHH
Confidence            444455555555555555666788887653       3555678899999999999999999999999888877766666


Q ss_pred             HHHHHHHHHHHhc--------------------ccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHH
Q 013707           89 TLSIIPLAILAYR--------------------RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI  148 (438)
Q Consensus        89 ~~~~~~~~~~~~~--------------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  148 (438)
                      ++.++..+...+.                    ++   .+.+++..++.|+ +.+...+...+++.+.+|+++||+++|.
T Consensus       299 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~G~v~g~  374 (1140)
T PRK06814        299 LLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH---GWRILIDLFGLAA-AGGLYIVPLFAALQAWANPAHRARVIAA  374 (1140)
T ss_pred             HHHHHHHHHHHhcccccccccccccchhhhhcccc---cHHHHHHHHHHHH-HHHHhHHHHHHHHHhhCCcccceeeeHH
Confidence            6655555444442                    44   6777888888999 7888888899999999999999999999


Q ss_pred             HHHHHHhhhhhhHhhhHHh-----hHHHHHHHHHHH
Q 013707          149 LLGVLSASFVCGTLAARFL-----STTSAFQAATIV  179 (438)
Q Consensus       149 ~~~~~~~g~~~g~~l~~~~-----~w~~~f~~~~~~  179 (438)
                      .+....+|..+|+.+.+.+     +....+++.+.+
T Consensus       375 ~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        375 NNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            9999999999999887764     345555554444

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.00  E-value=1.9e-08  Score=95.02  Aligned_cols=145  Identities=12%  Similarity=0.058  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----hhchhhHHHH-HHHH
Q 013707          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP----ILGEAKLLSL-GLFA  322 (438)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~-~~~~  322 (438)
                      +.......+-..+.+.....+.++|+++ +|.++.+.+.+.....+...+.+ ++.|+++|    |+|||+..+. +...
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~-Pi~G~lSDr~~sr~GRRrp~il~g~~~   83 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQ-PLVGYLSDRCTSRFGRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-hHeeehhcCCCCCCCChHHHHHHHHHH
Confidence            3444455555667777778888998866 89999999999999999999999 88899999    5999988766 4666


Q ss_pred             HHHHHHHhHhcccch-----------------HHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcc--hhHHHHHhhHhhh
Q 013707          323 ACINMFICSISWSAW-----------------VPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQ--GKAQGCISGISSF  382 (438)
Q Consensus       323 ~~~~~~~~~~~~~~~-----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~~  382 (438)
                      ..+++.++++..+..                 .... ..+..+......++..+++.|.+|+++|  +.+.++.+....+
T Consensus        84 ~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~l  163 (477)
T TIGR01301        84 VAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAI  163 (477)
T ss_pred             HHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHH
Confidence            677777777654421                 1111 2344567777888889999999998865  6799999999999


Q ss_pred             hhhhhhHhHHHH
Q 013707          383 ANIVSPLIFSPL  394 (438)
Q Consensus       383 g~~~g~~~~g~l  394 (438)
                      |+.+|+.+++..
T Consensus       164 G~ilg~~~g~~~  175 (477)
T TIGR01301       164 GNVLGYAAGAYS  175 (477)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988865

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.96  E-value=3.8e-08  Score=87.93  Aligned_cols=143  Identities=15%  Similarity=0.058  Sum_probs=120.2

Q ss_pred             HHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhc
Q 013707          254 VAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS  333 (438)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (438)
                      ..|+.+......+..+-+.+++.++.+..+++++......+..+.+ +-.+++.||+|.|+-+..|+.+.++++.++.-+
T Consensus        20 ~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~-lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pA   98 (422)
T COG0738          20 SLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMS-LPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPA   98 (422)
T ss_pred             HHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHh-ccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Confidence            3344444444556677778888899999999999999988888888 778899999999999999999999999998754


Q ss_pred             cc--ch-HHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          334 WS--AW-VPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       334 ~~--~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      .+  .+ .+.. .++.+.|.+...+..+.+++..-|++....-+.+.+.++.+|.+++|.+++.+..+
T Consensus        99 a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils  166 (422)
T COG0738          99 ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS  166 (422)
T ss_pred             hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence            43  22 3333 47778999999999999999999998889999999999999999999999999884

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.96  E-value=9.4e-09  Score=98.25  Aligned_cols=172  Identities=18%  Similarity=0.274  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccC--cchHhH
Q 013707            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG--RKAMLT   85 (438)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~G--rk~~l~   85 (438)
                      +.+..+.+...+..++.....-.+|.+.+        +.+.+..+...+.++..+...++.+..|+++|+..  ++.+..
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~--------~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~  369 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK--------SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFL  369 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHH
Confidence            34556667777777887777777888865        44555577789999999999999999999999988  455666


Q ss_pred             HHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhH
Q 013707           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (438)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~  165 (438)
                      ++++..+++...++++++   ++.+...-.+.|+ +.|.........+.|..+.++.+.+.|+.....+++.++||.+++
T Consensus       370 ~~ll~~gl~~~~~p~~~~---~~~l~~~~~~fG~-~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag  445 (509)
T KOG2504|consen  370 LTLLIAGLARLFLPFATT---YVGLIVFSILFGF-CVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG  445 (509)
T ss_pred             HHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce
Confidence            788888888889999999   8999999999999 888888777789999999999999999999999999999999998


Q ss_pred             Hh-----hHHHHHHHHHHHHHHHHHHHHHhcc
Q 013707          166 FL-----STTSAFQAATIVSMLAAAYMRVFLK  192 (438)
Q Consensus       166 ~~-----~w~~~f~~~~~~~~i~~~~~~~~~~  192 (438)
                      ++     +|...|+..+...++.... ++..|
T Consensus       446 ~~~d~tg~Y~~~f~~~g~~~~~s~~~-~~~~~  476 (509)
T KOG2504|consen  446 LLYDITGNYDHAFYFCGLCFLLSAVL-LLILR  476 (509)
T ss_pred             eeeeccCCeeeehhhcChHHHHHHHH-HHHhH
Confidence            75     4888999888886665433 34444

>PRK09848 glucuronide transporter; Provisional

Probab=98.95  E-value=4.9e-09  Score=100.39  Aligned_cols=150  Identities=11%  Similarity=0.080  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHH
Q 013707            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (438)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (438)
                      |.+....+..++...+........|.+.++       ..+.+....++......++..++.++++++.||+|+|+.+.++
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g  300 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRY-------VLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIG  300 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEee-------ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            445555555566666555555555555443       2333444444545555677888999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCcc-------chhHHHHHHHHHHHhhhhhh
Q 013707           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER-------QRASAFGILLGVLSASFVCG  160 (438)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~g  160 (438)
                      .++..++.+...+.++.+ .+.+++..++.|+ +.+...+...++.+|..|++       ++|...|..+....+|..+|
T Consensus       301 ~~~~~i~~~~~~~~~~~~-~~~~~~~~~l~g~-G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig  378 (448)
T PRK09848        301 ALLGTCGYLLFFWVSVWS-LPVALVALAIASI-GQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIG  378 (448)
T ss_pred             HHHHHHHHHHHHHcCchh-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHH
Confidence            988888877777654322 5666777888899 88888899999999998754       35888899999999999998


Q ss_pred             HhhhHH
Q 013707          161 TLAARF  166 (438)
Q Consensus       161 ~~l~~~  166 (438)
                      +.+.+.
T Consensus       379 ~~i~g~  384 (448)
T PRK09848        379 GSIPAF  384 (448)
T ss_pred             HHHHHH
Confidence            887765

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.91  E-value=7.7e-08  Score=90.06  Aligned_cols=153  Identities=16%  Similarity=0.127  Sum_probs=109.2

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccch-----hHH-HHHHHHHhhh
Q 013707           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSIS-----FFY-AYYALRTLTA  118 (438)
Q Consensus        45 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~-----~~~-~l~~~r~l~G  118 (438)
                      +.+++....-++.........+.+++...+.||+|||+.++.+..+..+..+++.......     +.. ..+++.++..
T Consensus       299 ~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~  378 (485)
T KOG0569|consen  299 TAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFI  378 (485)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3455556666777777888889999999999999999999999998888877766542111     111 2233444433


Q ss_pred             hcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhh----HhhhHHhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 013707          119 MVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG----TLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDD  194 (438)
Q Consensus       119 ~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g----~~l~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~  194 (438)
                      ++-+-+..|...-+.+|.+|++.|+.++++......+...+-    |.+-..+|- ..|.+..+.+++..++.++.+||+
T Consensus       379 ~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  379 ISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             HhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence            322233457889999999999999999999888776665443    444444555 667777777788888899999999


Q ss_pred             CCCC
Q 013707          195 VPND  198 (438)
Q Consensus       195 ~~~~  198 (438)
                      +.+.
T Consensus       458 kgr~  461 (485)
T KOG0569|consen  458 KGRT  461 (485)
T ss_pred             CCCC
Confidence            7544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.88  E-value=5.3e-08  Score=92.67  Aligned_cols=148  Identities=18%  Similarity=0.184  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      +|.+..++...++..++..+.....+.+.++.++.+        ...+.+..+..++..++.+++++++||+|+|+.+..
T Consensus       224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~--------~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~  295 (428)
T PF13347_consen  224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE--------GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII  295 (428)
T ss_pred             cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence            466777788888888898888888888888754222        244677778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcc--cchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCcc-------chhHHHHHHHHHHHhhh
Q 013707           87 PLTLSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER-------QRASAFGILLGVLSASF  157 (438)
Q Consensus        87 ~~~~~~~~~~~~~~~~--~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~  157 (438)
                      +..+.+++.++..+.+  +   .+.+++.-++.|+ +.+...+...++++|..+.+       +.|..+|..+....+|.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~---~~~~~i~~~l~gi-~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~  371 (428)
T PF13347_consen  296 GLLLAALGFLLLFFLGPGS---PWLVLILFILAGI-GYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQ  371 (428)
T ss_pred             hHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhHh-hhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHH
Confidence            9999999999888886  6   8899999999999 88888899999999999843       34777788888888888


Q ss_pred             hhhHhhhHH
Q 013707          158 VCGTLAARF  166 (438)
Q Consensus       158 ~~g~~l~~~  166 (438)
                      .+++.+.+.
T Consensus       372 ~la~~i~g~  380 (428)
T PF13347_consen  372 GLAGAIVGL  380 (428)
T ss_pred             HHHHHHHHH
Confidence            887776654

>TIGR01272 gluP glucose/galactose transporter

Probab=98.87  E-value=1.1e-07  Score=85.82  Aligned_cols=157  Identities=11%  Similarity=0.013  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHH
Q 013707            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (438)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (438)
                      ......+..++...........++.|.++     .+..+.+..+.++..+.+..+..++.+..+++.||+|+|+.+.++.
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~-----~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~  215 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSD-----PHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNA  215 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            34444444444444555556667777763     2245677788899999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh-
Q 013707           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (438)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-  167 (438)
                      .+..++.++....++   .... ..-++.|+ +.+...|...+...+..|++ .+++.++. ....+|..++|.+.|.+ 
T Consensus       216 ~l~~~~~~l~~~~~~---~~~~-~~~~l~g~-~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~la  288 (310)
T TIGR01272       216 FLAVLLSIGAALTHG---YVAM-WFVLALGL-FNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLA  288 (310)
T ss_pred             HHHHHHHHHHHHcCC---HHHH-HHHHHHHH-HHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHH
Confidence            887777766665554   2222 34457788 78889999999998888753 45666665 55668889999877664 


Q ss_pred             ---hHHHHHHHHH
Q 013707          168 ---STTSAFQAAT  177 (438)
Q Consensus       168 ---~w~~~f~~~~  177 (438)
                         |.+..|++..
T Consensus       289 d~~g~~~a~~v~~  301 (310)
T TIGR01272       289 DCLGIQLAFALPV  301 (310)
T ss_pred             HhccchHHHHHHH
Confidence               5566666443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.85  E-value=3.2e-08  Score=95.35  Aligned_cols=150  Identities=13%  Similarity=0.113  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      +|.+..++...++......+.....+.+.++..       + +....+++.+...++.+++.+++++++||+|||+.+..
T Consensus       230 n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~-------~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~  301 (473)
T PRK10429        230 NDQLSCLLGMALAYNIASNIINGFAIYYFTYVI-------G-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAG  301 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhheeeEEEEEC-------C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            345555566666666666666555555543221       1 12345667777778889999999999999999999998


Q ss_pred             HHHHHHHHHHHHHh---cccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCc-------cchhHHHHHHHHHHHhh
Q 013707           87 PLTLSIIPLAILAY---RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-------RQRASAFGILLGVLSAS  156 (438)
Q Consensus        87 ~~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g  156 (438)
                      +..+..++.+...+   .++ +..+.+++.-++.|+ +.+...+...++++|..|.       ++.|..++......-+|
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~l~g~-~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~  379 (473)
T PRK10429        302 ASIFPVLSCGVLLLMGLAAP-HNALLIVIAGILLNI-GTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGG  379 (473)
T ss_pred             HHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHH
Confidence            88776666554432   121 125666777788888 7788888899999999773       33455788888888888


Q ss_pred             hhhhHhhhHH
Q 013707          157 FVCGTLAARF  166 (438)
Q Consensus       157 ~~~g~~l~~~  166 (438)
                      ..+|+.+.+.
T Consensus       380 ~al~~~i~g~  389 (473)
T PRK10429        380 SAFAAFFIGV  389 (473)
T ss_pred             HHHHHHHHHH
Confidence            8888877765

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.81  E-value=2.5e-07  Score=83.67  Aligned_cols=161  Identities=23%  Similarity=0.303  Sum_probs=122.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHH
Q 013707           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (438)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~   92 (438)
                      .....+....+.....+..+.+..+...   +. . . ...++..+.+.++..++.++.|.++||+|||+.+..+.....
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~   80 (338)
T COG0477           7 LALAALLLGLDLGLLSPALPLLLSTLSL---SS-G-R-LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFL   80 (338)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHcCC---Cc-h-h-HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHH
Confidence            3444455556777777777777664311   11 0 0 456889999999999999999999999999988888887655


Q ss_pred             HHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCc-cchhHHHHHHHH-HHHhhhhhhHhhhHHh---
Q 013707           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-RQRASAFGILLG-VLSASFVCGTLAARFL---  167 (438)
Q Consensus        93 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~l~~~~---  167 (438)
                      .+.+...+..+ ...+.+.+.|+.+|+ +.+...+...+++.|+.|+ ++|+...+.... ...+|..++|.+++.+   
T Consensus        81 ~~~~~~~~~~~-~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477          81 LGTLLLALAPN-VGLALLLILRLLQGL-GGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHhCcc-chHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666654 337899999999999 8888889999999999998 688999998888 5788888888777653   


Q ss_pred             ---hHHHHHHHHHHHHH
Q 013707          168 ---STTSAFQAATIVSM  181 (438)
Q Consensus       168 ---~w~~~f~~~~~~~~  181 (438)
                         +||..|........
T Consensus       159 ~~~~~~~~~~~~~~~~~  175 (338)
T COG0477         159 LLWGWRAAFLLAALLGL  175 (338)
T ss_pred             HhcchHHHHHHHHHHHH
Confidence               68886666655543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.81  E-value=2.4e-07  Score=89.08  Aligned_cols=123  Identities=16%  Similarity=0.124  Sum_probs=91.2

Q ss_pred             hHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHH-HHH
Q 013707          266 QASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTA  344 (438)
Q Consensus       266 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  344 (438)
                      ...++....+ .|-++.. .++.....+...+.. ++.|+++|.+|||..++.+.++..++.++.+.+++....+. ..+
T Consensus        64 a~~l~~I~~d-iG~~~~~-~w~~~~~~l~~av~~-~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l  140 (599)
T PF06609_consen   64 ASILPYINAD-IGGSDNW-SWFSTAWTLASAVSF-PFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVL  140 (599)
T ss_pred             HHHHHHHHHh-cCCCccc-hHHHHHHHHHHHHHH-HhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHH
Confidence            3444544444 6766544 677777888888877 78899999999999999999999999999999998887777 678


Q ss_pred             HHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHH
Q 013707          345 FSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFS  392 (438)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g  392 (438)
                      .|++.+.... ....++|..|.+.|+...++.....-.....+|.+..
T Consensus       141 ~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~  187 (599)
T PF06609_consen  141 YGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQ  187 (599)
T ss_pred             HHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHH
Confidence            8888666654 4556899999999987776555443333334444443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09669 putative symporter YagG; Provisional

Probab=98.75  E-value=7.5e-08  Score=92.11  Aligned_cols=144  Identities=12%  Similarity=0.123  Sum_probs=106.2

Q ss_pred             HHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hch-hhHHHHHHHHHHHHHHH
Q 013707          255 AFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI----LGE-AKLLSLGLFAACINMFI  329 (438)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~-~~~~~~~~~~~~~~~~~  329 (438)
                      .+..+........+++.|+.+.+|+|+..+|.+..+..+...+.. ++.|+++||    +|| |+.+..+.+..+++..+
T Consensus        18 ~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~d-p~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l   96 (444)
T PRK09669         18 DTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTD-PLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLL   96 (444)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccc-ceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHH
Confidence            344444556667888999999999999999999999999999999 888999998    565 45666777777666655


Q ss_pred             hHhcccc------hHHHH-HHHHHhhhhhhHHHHHHHHhhcC-CCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHh
Q 013707          330 CSISWSA------WVPYA-TTAFSVLVVFATPSFRSIVSKQV-GPNEQGKAQGCISGISSFANIVSPLIFSPLTALFL  399 (438)
Q Consensus       330 ~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  399 (438)
                      ....++.      +...+ ..+.+.+......+..++..|.. ++++|++..+.......+|..+++.+...+....+
T Consensus        97 ~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~  174 (444)
T PRK09669         97 TFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILG  174 (444)
T ss_pred             HHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5444321      11111 23445556666677778888877 45789999999999999999999888777776543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.75  E-value=1e-07  Score=90.05  Aligned_cols=123  Identities=12%  Similarity=0.116  Sum_probs=110.5

Q ss_pred             HhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhccc--chHHHH-HHHHHhhhh
Q 013707          274 KAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWS--AWVPYA-TTAFSVLVV  350 (438)
Q Consensus       274 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~  350 (438)
                      ++.+++++.+-+++++....+.++++ +-.+++.||+|.|+++..+.++.+++.++..++.+  .+.+++ -++.|++.+
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~-iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g  143 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQ-IPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQG  143 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHH-cCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHh
Confidence            34589999999999999999999999 77789999999999999999999999998888653  333333 588999999


Q ss_pred             hhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          351 FATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      ..+|....+..+-.|+++|++..++.....++|.+++-++.|.+-+.
T Consensus       144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s  190 (466)
T KOG2532|consen  144 VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES  190 (466)
T ss_pred             HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence            99999999999999999999999999999999999999999999886

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.74  E-value=4.7e-06  Score=73.85  Aligned_cols=351  Identities=12%  Similarity=0.016  Sum_probs=192.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhccccc-----ccCcc
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD-----QYGRK   81 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D-----r~Grk   81 (438)
                      ++++..+.+...+.....++.. .+|.+.+..        +.|....+.. +..... ..--+.|.++.|     |+|||
T Consensus        30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak--------~vSyt~~a~f-S~ay~P-~sLKllWaPiVDs~y~k~~Grr   98 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAK--------GVSYTSQAIF-SFAYWP-FSLKLLWAPIVDSVYSKRFGRR   98 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCC--------Ccchhhhhhh-hhhhhH-HHHHHHHHhhhHHHHHHhhccc
Confidence            4567777777778888888888 889887621        2222222321 111222 223567999999     99999


Q ss_pred             hHhHH-HHHHHHHHHHHHHhcccc------h--hHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHH
Q 013707           82 AMLTL-PLTLSIIPLAILAYRRSI------S--FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGV  152 (438)
Q Consensus        82 ~~l~~-~~~~~~~~~~~~~~~~~~------~--~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  152 (438)
                      |..++ +..+....+...+.-.+.      .  ....+-..-++.-+ ..+....+...+.-...++++.+-+......+
T Consensus        99 ksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnf-laAtQDIAVDgwALtmLs~e~lgyaST~q~Vg  177 (510)
T KOG3574|consen   99 KSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNF-LAATQDIAVDGWALTMLSRENLGYASTCQSVG  177 (510)
T ss_pred             cceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHH-HHhhhhhhhhHHHHHhcCHhhcCchhHHHHHH
Confidence            98765 333333333333322110      0  02222223344455 55677778888888888888888877777777


Q ss_pred             HHhhhhhhHhhhH----------Hh-hH---------HHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhcc
Q 013707          153 LSASFVCGTLAAR----------FL-ST---------TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEET  212 (438)
Q Consensus       153 ~~~g~~~g~~l~~----------~~-~w---------~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (438)
                      .+.|..+|..+--          ++ +|         ..-.++.+.+.+++-.+..+.-+|.+++..++           
T Consensus       178 ~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e-----------  246 (510)
T KOG3574|consen  178 QTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEE-----------  246 (510)
T ss_pred             HhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhh-----------
Confidence            7777666643210          00 12         12233334443444333333223322221111           


Q ss_pred             ccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHH
Q 013707          213 EGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAG  292 (438)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  292 (438)
                                    .+.+..+..|- ++...+-|.+..........-.++.+.....+.-+.| .|.+..+.+++.....
T Consensus       247 --------------~~~~i~~~yk~-l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~~~  310 (510)
T KOG3574|consen  247 --------------LELGIHESYKL-LRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIAVPLV  310 (510)
T ss_pred             --------------hhcCHHHHHHH-HHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeeeeehh
Confidence                          11111112222 2223345566666667777778888888888888888 5999999777654433


Q ss_pred             HHHHHHHHHHHHHHHH-hh-----chhhHHHHHHHHHHHHHHHhHhccc-------chH-HHH--H---HHHHhhhhhhH
Q 013707          293 LAGTISQLLFMPLLAP-IL-----GEAKLLSLGLFAACINMFICSISWS-------AWV-PYA--T---TAFSVLVVFAT  353 (438)
Q Consensus       293 ~~~~~~~~~~~~~l~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~--~---~~~~~~~~~~~  353 (438)
                      -..++.. ...|+++. +.     -|+....+.  ...+...+....++       ... .++  .   .+.+......+
T Consensus       311 plqI~l~-~~~gk~ta~~~pl~~~lka~~~R~~--~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~f  387 (510)
T KOG3574|consen  311 PLQIALP-LYIGKWTAGPRPLNVFLKAVPYRLG--GGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMF  387 (510)
T ss_pred             hHHHhhh-hhheeecCCCCcchHHHHhhhHHHH--HHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHH
Confidence            4444444 23333322 11     111111111  12222222222221       111 111  1   23344445556


Q ss_pred             HHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHh
Q 013707          354 PSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFL  399 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  399 (438)
                      ....+..++..||...|+.+.+.|+..++|+-.=..+...+.|...
T Consensus       388 v~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt  433 (510)
T KOG3574|consen  388 VSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT  433 (510)
T ss_pred             HHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence            6677778999999999999999999999999998889999988753

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.74  E-value=5.4e-06  Score=71.21  Aligned_cols=149  Identities=16%  Similarity=0.135  Sum_probs=104.3

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccc----hhHHHHHHHHHhhhhc
Q 013707           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI----SFFYAYYALRTLTAMV  120 (438)
Q Consensus        45 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~  120 (438)
                      .++.+..+...+.+...+|..+ +++.|.+.|++|.+.++.++.+...++......+-+.    ..+|.+.+..++.|. 
T Consensus        31 ~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~-  108 (250)
T PF06813_consen   31 RLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGN-  108 (250)
T ss_pred             HhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcc-
Confidence            5566667778888888899876 5889999999999999999999999988777654211    126788888888888 


Q ss_pred             chhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH-hh--HHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 013707          121 CEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-LS--TTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (438)
Q Consensus       121 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~-~~--w~~~f~~~~~~~~i~~~~~~~~~~~~~~  196 (438)
                      +.+....+......+.+| ++||.+.|+.-...+++..+-..+... ++  -..-+...+....+..+...+++++.++
T Consensus       109 s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~  186 (250)
T PF06813_consen  109 SSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVPP  186 (250)
T ss_pred             cHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccCC
Confidence            767776677777778887 689999999999998887665444433 32  1222333333333333444455555543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.73  E-value=7e-06  Score=81.04  Aligned_cols=140  Identities=17%  Similarity=0.141  Sum_probs=101.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhcccccc-cCcchHhHHHHHHHHHHHHHHHhcccc-----hhHHHHHHHHHhhhhc
Q 013707           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLTLPLTLSIIPLAILAYRRSI-----SFFYAYYALRTLTAMV  120 (438)
Q Consensus        47 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~  120 (438)
                      +.+......+...+....-+...+.|.++|+ +||++.+.++.++..++..+.+++...     ......+++-.+..+ 
T Consensus        19 g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~-   97 (654)
T TIGR00926        19 GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL-   97 (654)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh-
Confidence            3333444555666666667778889999997 599999999999999998887775321     112335556666666 


Q ss_pred             chhhHhhhhhHhhhccCCccc---hhHHHHHHHHHHHhhhhhhHhhhHHh-----------hHHHHHHHHHHHHHHHHHH
Q 013707          121 CEGSINCLALAYVADNISERQ---RASAFGILLGVLSASFVCGTLAARFL-----------STTSAFQAATIVSMLAAAY  186 (438)
Q Consensus       121 ~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~l~~~~-----------~w~~~f~~~~~~~~i~~~~  186 (438)
                      |.|..-|...+...|.+++++   |-+.+.+...+.++|..+++.+..++           +|...|.+.++..++..+.
T Consensus        98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv  177 (654)
T TIGR00926        98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV  177 (654)
T ss_pred             hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence            788899999999999998643   56677788888899988887776553           3888888888776665544


Q ss_pred             H
Q 013707          187 M  187 (438)
Q Consensus       187 ~  187 (438)
                      .
T Consensus       178 f  178 (654)
T TIGR00926       178 F  178 (654)
T ss_pred             H
Confidence            3

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.73  E-value=3.5e-07  Score=77.60  Aligned_cols=146  Identities=17%  Similarity=0.210  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHH
Q 013707            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (438)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (438)
                      .++.+....+..+....-....-|.+.+       +.+++|+...+-+.+.......+.+|+.|.++||+||+...+.+.
T Consensus       265 pfw~~~iicv~yyva~fPFi~lg~~fF~-------~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a  337 (459)
T KOG4686|consen  265 PFWVLVIICVLYYVAWFPFITLGPMFFQ-------KRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASA  337 (459)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhHHHHH-------HhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHH
Confidence            4566666665555554433333344443       466777777888888888888999999999999999999888765


Q ss_pred             HHH-HHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh
Q 013707           89 TLS-IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (438)
Q Consensus        89 ~~~-~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~  167 (438)
                      .+. .++.....++.     +.=++...+.|+ +....-......++...|+++.|.+.|..+...++|..+-|++++.+
T Consensus       338 ~~~tl~~H~~l~Ft~-----lsPy~~m~~lGL-sysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i  411 (459)
T KOG4686|consen  338 CILTLLGHSGLFFTF-----LSPYTSMTFLGL-SYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI  411 (459)
T ss_pred             HHHHHHHhhhHHhhh-----ccHHHHHHHHhh-hHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence            544 44444444432     222456677888 66666555777889999999999999999999999999999999874

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.70  E-value=1.6e-06  Score=84.49  Aligned_cols=111  Identities=15%  Similarity=0.050  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHh
Q 013707          283 QFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVS  361 (438)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  361 (438)
                      +.+++.+...++..++. +..|+++|++|||+.+..+.+...++.++..++.+.+.+.. -++.|++.+........+.+
T Consensus        90 ~~s~~~s~~~lga~~g~-l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s  168 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGS-LLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS  168 (513)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence            44899999999999999 88899999999999999999999999999999998888777 58999999999999999999


Q ss_pred             hcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHH
Q 013707          362 KQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  395 (438)
Q Consensus       362 ~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  395 (438)
                      |..|++.||...+..+....+|..++ .+.+...
T Consensus       169 Eiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~  201 (513)
T KOG0254|consen  169 EIAPAHIRGTLVSLYQLFITIGILLG-YCINYGT  201 (513)
T ss_pred             hcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhh
Confidence            99999999999999998888777777 3444443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.69  E-value=2.7e-05  Score=72.02  Aligned_cols=373  Identities=11%  Similarity=0.037  Sum_probs=188.1

Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhccccc-----ccCcchHhHH
Q 013707           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD-----QYGRKAMLTL   86 (438)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D-----r~Grk~~l~~   86 (438)
                      .+.+..++.+...++....+|.++++.      .-+.+..+.|.. |....++. .-++|.++.|     |+||||..++
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~------~~~~sy~q~~~f-Sla~~PfS-lKlLWaPiVDs~y~~~~GRRKSWii   75 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSM------AKKVSYSQQAIF-SLASYPFS-LKLLWAPIVDSVYSKRIGRRKSWII   75 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccc------cCCCChhHheee-eeeechhH-HHHhhhhhhhhhcccccCCcchhhh
Confidence            455566777777788777788887741      123333333321 11112221 2345666666     7899998876


Q ss_pred             HH-HHHHHHHHHHHhcc----------c---------chhH--HHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhH
Q 013707           87 PL-TLSIIPLAILAYRR----------S---------ISFF--YAYYALRTLTAMVCEGSINCLALAYVADNISERQRAS  144 (438)
Q Consensus        87 ~~-~~~~~~~~~~~~~~----------~---------~~~~--~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~  144 (438)
                      -. .+.++..+..+...          +         .+..  ..+...-++.=+ -.+....+...+.-...++++++.
T Consensus        76 P~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~f-l~ATQDIAVDGWALT~Ls~~n~~~  154 (544)
T PF13000_consen   76 PIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVF-LCATQDIAVDGWALTMLSPENVGY  154 (544)
T ss_pred             HHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHH-HHccCCceeehhhhhhcChhhcch
Confidence            43 33333333333221          0         0001  111122212222 234555566667666777788777


Q ss_pred             HHHHHHHHHHhhhhhhHhhhHHh-------hH-------------HHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCC
Q 013707          145 AFGILLGVLSASFVCGTLAARFL-------ST-------------TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLT  204 (438)
Q Consensus       145 ~~~~~~~~~~~g~~~g~~l~~~~-------~w-------------~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  204 (438)
                      +..-...+.++|..++-.+--.+       .|             ..-..+.+...++..++..++-+|.+..+... +.
T Consensus       155 ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~-~~  233 (544)
T PF13000_consen  155 ASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLP-KI  233 (544)
T ss_pred             HHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCc-cc
Confidence            76666666666655543221111       00             11112233333344444445556654332211 11


Q ss_pred             cccchhccccccCCCCCCCCCc-ccccc----CCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCC
Q 013707          205 RPIITEETEGVNQNESNSPVKI-PVCKK----IPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHF  279 (438)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  279 (438)
                      +...+. +++..+...+..+++ ...++    .+..+..++.+ |-|.+..+.+.....-.++.........-+.| .|+
T Consensus       234 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~il-kLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~  310 (544)
T PF13000_consen  234 EPINKS-DGKSKEISIEYDESDVISTEEILSIKDVYKSLWKIL-KLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGL  310 (544)
T ss_pred             cccccc-cccccccceecccccccchhhhhhHHHHHHHHHHHH-cCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCC
Confidence            110000 000000000000000 00111    12333333333 46677778888888888888888888888888 599


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhch---------------------------hhHHHHHHHHHHH----HHH
Q 013707          280 NKNQFADLMLIAGLAGTISQLLFMPLLAPILGE---------------------------AKLLSLGLFAACI----NMF  328 (438)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------------~~~~~~~~~~~~~----~~~  328 (438)
                      +.++.+.+..+..-..++.. ...++.+.--.+                           -+....++..-.+    +..
T Consensus       311 ~KE~LAl~~li~~P~qii~~-~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~  389 (544)
T PF13000_consen  311 SKEDLALLVLIDFPFQIILP-YYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQL  389 (544)
T ss_pred             CHHHhHHHHHHhhhHHHHHH-HHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHh
Confidence            99998776655544455544 333333321110                           0111222221111    111


Q ss_pred             HhHhcc-c----chHHHHH----HHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          329 ICSISW-S----AWVPYAT----TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       329 ~~~~~~-~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      .....+ +    .+...+.    .+..+.....+....++-+++.+|..-|+.+.+.|++.++|+..-..+.=++.|.+
T Consensus       390 iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f  468 (544)
T PF13000_consen  390 IVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF  468 (544)
T ss_pred             eEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence            111122 1    1111111    33345556667778888899999999999999999999999999888888888875

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.68  E-value=2.5e-07  Score=77.73  Aligned_cols=291  Identities=11%  Similarity=0.043  Sum_probs=150.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhh
Q 013707           51 YLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLAL  130 (438)
Q Consensus        51 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  130 (438)
                      .++|.+.-+.+-...+.+.+.|.++|+-|||+.-+.-.+-+.++++ .-.++.   +..++++|.+.|+ +.+....+..
T Consensus        72 G~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpq---YkVLmVGR~LGGi-aTsLLFSaFE  146 (454)
T KOG4332|consen   72 GDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQ---YKVLMVGRVLGGI-ATSLLFSAFE  146 (454)
T ss_pred             CccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCc---eEEEeehhhhhhH-HHHHHHHHHH
Confidence            3445555555666677888899999999999975544444433332 233455   8899999999999 8787777766


Q ss_pred             Hh-hhccCCccchhHHHHHHHHHH----HhhhhhhHhhhHH--------h--hHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 013707          131 AY-VADNISERQRASAFGILLGVL----SASFVCGTLAARF--------L--STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (438)
Q Consensus       131 ~~-i~~~~~~~~r~~~~~~~~~~~----~~g~~~g~~l~~~--------~--~w~~~f~~~~~~~~i~~~~~~~~~~~~~  195 (438)
                      ++ +.|..+  +|+.-.-+.....    -+|.-+-.+++|.        +  |.-.+|-..+.+..+...++..--.|.-
T Consensus       147 sWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENy  224 (454)
T KOG4332|consen  147 SWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENY  224 (454)
T ss_pred             HHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhcc
Confidence            65 566653  3333222222211    1222222222222        1  3345666555443343333332223332


Q ss_pred             CCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHH-HHHHHHHHHhhhchhhHHHHHHHH
Q 013707          196 PNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQ-AAVVAFFSGLSEGGMQASFLYFLK  274 (438)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  274 (438)
                      .+..+++                           ......+...+.+..++++.. ..+-..+-...+..+.-|-|..-.
T Consensus       225 gdps~~k---------------------------dlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLsp  277 (454)
T KOG4332|consen  225 GDPSENK---------------------------DLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSP  277 (454)
T ss_pred             CChhhhH---------------------------HHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCC
Confidence            2211110                           000122222223333333332 222222222222222233332211


Q ss_pred             hHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHhHhcc----c---c-hHHHHHHH
Q 013707          275 AQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE--AKLLSLGLFAACINMFICSISW----S---A-WVPYATTA  344 (438)
Q Consensus       275 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~---~-~~~~~~~~  344 (438)
                      +..+.+   -|.+++...+..++++.+.. ++..|-..  ...+.+.+....+.+.+.....    +   + ..++..++
T Consensus       278 n~e~iP---hGfiFatFMlASmLGSSla~-Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~  353 (454)
T KOG4332|consen  278 NDEEIP---HGFIFATFMLASMLGSSLAS-RLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCL  353 (454)
T ss_pred             CcccCC---chhHHHHHHHHHHHhhHHHH-HHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHH
Confidence            111221   27888888888888884443 44443322  3344555555544444433321    1   1 12233456


Q ss_pred             HHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhH
Q 013707          345 FSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGI  379 (438)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  379 (438)
                      +-.+.+..+|...-+-.+..|++.|++.+-.+..-
T Consensus       354 ~E~cvGlfwPSimkmRsqyIPEearstimNfFRvP  388 (454)
T KOG4332|consen  354 FEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVP  388 (454)
T ss_pred             HHHHHhhcchHHHHHHHhhCCHHHHhhhhhheech
Confidence            66788899999999999999999998877655443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.67  E-value=1.1e-05  Score=71.98  Aligned_cols=149  Identities=14%  Similarity=-0.025  Sum_probs=103.4

Q ss_pred             HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHH
Q 013707          276 QFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATP  354 (438)
Q Consensus       276 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  354 (438)
                      .+|+++.+++.++........+.+ .+.|.++||+|||+..+..+++..++++.- ..++...+++ -++-|++....+.
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g-~~~G~laD~~Grk~~cl~~cily~~scl~k-~~~~~~~L~~GRvlgGiaTSLLfS  140 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFG-TFVGSLADRYGRKKACLLFCILYSLSCLTK-HSSNYPVLLLGRVLGGIATSLLFS  140 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHH
Confidence            489999999999998888888888 788899999999999999999998888654 3455666665 4777888888887


Q ss_pred             HHHHHH-h----hcCCCCcchhHHHHHh-hHhhhhhhhhhHhHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 013707          355 SFRSIV-S----KQVGPNEQGKAQGCIS-GISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELL  428 (438)
Q Consensus       355 ~~~~~~-~----~~~~~~~~g~~~g~~~-~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (438)
                      ..-++. .    +-+|+|..+..++... ..+.+-.+.+..++..+.+..+.      .+..+|..+..+.+++.++...
T Consensus       141 ~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~------g~vaPF~~a~~~l~~~~~~I~~  214 (354)
T PF05631_consen  141 AFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF------GPVAPFDAAIVLLAVAAVLILK  214 (354)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC------CCcchHHHHHHHHHHHHHHHHh
Confidence            777764 2    2345555566666555 23344455555555555554321      2345677777777776666654


Q ss_pred             hhhh
Q 013707          429 LSFY  432 (438)
Q Consensus       429 ~~~~  432 (438)
                      .+++
T Consensus       215 ~W~E  218 (354)
T PF05631_consen  215 TWPE  218 (354)
T ss_pred             cccc
Confidence            4443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.65  E-value=2e-07  Score=89.38  Aligned_cols=120  Identities=11%  Similarity=0.041  Sum_probs=101.8

Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhc----------ccchhHHHHHHH
Q 013707           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR----------RSISFFYAYYAL  113 (438)
Q Consensus        44 ~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~  113 (438)
                      ...+.++.+.|++.....++.+++....+++.+|++.|+.+.++.++.+++.......          ++   .+.+...
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~---~~~~~~~  357 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISD---EVFVLGD  357 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCC---eeeeeeh
Confidence            3678888999999999999999999999999999999999999999988877554321          22   3455566


Q ss_pred             HHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh
Q 013707          114 RTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (438)
Q Consensus       114 r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~  167 (438)
                      .++.++ +.+........++.+..|+++++...++.+...++|..+++.+++.+
T Consensus       358 ~~l~~~-~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l  410 (468)
T TIGR00788       358 SIIAEV-LAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLL  410 (468)
T ss_pred             hHHHHH-HHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888 77777788899999999999999999999999999999999888764

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.65  E-value=2.5e-07  Score=85.48  Aligned_cols=161  Identities=17%  Similarity=0.205  Sum_probs=128.4

Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHH
Q 013707           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII   93 (438)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~   93 (438)
                      ++...+...+.+.+...+=..++|        .+......|........+-++.-++.+++..|+|+-+++..++.+..+
T Consensus       377 f~~av~mG~g~~lv~tFLfWHled--------~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~  448 (618)
T KOG3762|consen  377 FFVAVVMGAGVGLVFTFLFWHLED--------LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVG  448 (618)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh--------cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHH
Confidence            333444455555555555455443        334445667777777888888888999999999999999999999999


Q ss_pred             HHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHH-HHhhhhhhHhhhHH----hh
Q 013707           94 PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGV-LSASFVCGTLAARF----LS  168 (438)
Q Consensus        94 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~l~~~----~~  168 (438)
                      =.+..+..+|   .|..+-..+++|+ ..+..+.+.-+|+++..||+-|..+.++++.. .++|--+|.++|+.    ++
T Consensus       449 Rf~~~S~L~n---~W~vLPieilqgi-t~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg  524 (618)
T KOG3762|consen  449 RFLYYSYLQN---PWMVLPIEILQGI-THALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG  524 (618)
T ss_pred             HHHHHHHhcC---chheeeHHHHHHH-HHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh
Confidence            9999999999   9999999999999 89999999999999999999999999998865 47777777777776    47


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 013707          169 TTSAFQAATIVSMLAAAY  186 (438)
Q Consensus       169 w~~~f~~~~~~~~i~~~~  186 (438)
                      -|..|.+.++.+++.+++
T Consensus       525 ~~ttf~~~giAcl~~l~~  542 (618)
T KOG3762|consen  525 ARTTFRIFGIACLVTLAL  542 (618)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            788888887776555433

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.64  E-value=2e-07  Score=82.11  Aligned_cols=129  Identities=18%  Similarity=0.196  Sum_probs=95.4

Q ss_pred             HHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhH-HHHHHHHHhhhhcchhhHhhhhhHhhhccCCc
Q 013707           61 GLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFF-YAYYALRTLTAMVCEGSINCLALAYVADNISE  139 (438)
Q Consensus        61 ~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~  139 (438)
                      .+.-.-+.++.+++.||+|||+.+..+.+++.+..++...+.+.+.+ .+++.+|++...    + +.+.+.|..|++|.
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg----~-fqvaYvYtPEVyPT  465 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISG----A-FQVAYVYTPEVYPT  465 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhc----h-heEEEEecCcccch
Confidence            44556677899999999999999999999999988877766542212 355666665332    2 35789999999999


Q ss_pred             cchhHHHHHHHHHHHhhhhhhHhhhHHh--hHHHHHHHHHHHHHHHHHHHHHhcccC
Q 013707          140 RQRASAFGILLGVLSASFVCGTLAARFL--STTSAFQAATIVSMLAAAYMRVFLKDD  194 (438)
Q Consensus       140 ~~r~~~~~~~~~~~~~g~~~g~~l~~~~--~w~~~f~~~~~~~~i~~~~~~~~~~~~  194 (438)
                      .-|+...|..+.+..+|.++.|.++-..  +-..+..+.+...+++.+...++--|+
T Consensus       466 avRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  466 AVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             hhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence            9999999999999999999999998433  334555666666566655544433343

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.63  E-value=9.8e-07  Score=83.77  Aligned_cols=150  Identities=17%  Similarity=0.064  Sum_probs=116.1

Q ss_pred             hHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhH
Q 013707          275 AQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFAT  353 (438)
Q Consensus       275 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  353 (438)
                      +..++...+.+.+.++..++.+++. +..+.+.||++..+.+....++..+..++.....+.+.+.+ -++.|+..+..+
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~-~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~w  152 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQ-FPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGW  152 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHH-hhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccc
Confidence            4567888889999999999999999 78889999999666665555555544444444667776666 689999999999


Q ss_pred             HHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013707          354 PSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYEL  427 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (438)
                      |....++..-+.+++||..+|+.....++|+++|+.+...+.+.  +...........|++-+++.++..++.+
T Consensus       153 P~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~--~~~~~~~gW~~~FiI~G~i~~~~gi~~f  224 (495)
T KOG2533|consen  153 PGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKL--NGSGGLAGWRWLFIIEGVITLVLGIVVF  224 (495)
T ss_pred             hHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhh--cCCCCcCCceeehhHHHHHHHHHHheEE
Confidence            99999999999999999999999999999999999999887774  2222223344556666666665554443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.62  E-value=3.7e-07  Score=89.25  Aligned_cols=121  Identities=14%  Similarity=0.048  Sum_probs=108.6

Q ss_pred             hHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhH
Q 013707          275 AQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFAT  353 (438)
Q Consensus       275 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  353 (438)
                      +..+.+.....+..+...++..++. ++.|.++||+|||+++..+.++..++-+..+++++.+...+ -++.|++.+...
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~-~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~  189 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGS-LIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPL  189 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHH-hhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchh
Confidence            3356677777788888888888988 88899999999999999999999999999999999988877 588999999999


Q ss_pred             HHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          354 PSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      .....+..|.+++++|+.+..+ ......++.+++...+++...
T Consensus       190 ~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~  232 (521)
T KOG0255|consen  190 TVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRD  232 (521)
T ss_pred             HHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999 888888999999999988874

>PRK11462 putative transporter; Provisional

Probab=98.60  E-value=1.3e-06  Score=83.77  Aligned_cols=146  Identities=16%  Similarity=0.181  Sum_probs=111.4

Q ss_pred             HHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hch-hhHHHHHHHHHHHHH
Q 013707          253 VVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI----LGE-AKLLSLGLFAACINM  327 (438)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~-~~~~~~~~~~~~~~~  327 (438)
                      +..+..+........++..|+.+..|.++..+|.++.+.-+...+.- ++.|.++||    +|| |+.+..+.+..++++
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~D-p~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~   94 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISD-PCMGLLADRTRSRWGKFRPWVLFGALPFGIVC   94 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHh-hhheehhccCCCCCCCcchhHhHHHHHHHHHH
Confidence            33444455666677889999999999999999999999999999999 888999996    466 456667777777777


Q ss_pred             HHhHhccc--c-h-HHHH---HHHHHhhhhhhHHHHHHHHhhcCC-CCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHh
Q 013707          328 FICSISWS--A-W-VPYA---TTAFSVLVVFATPSFRSIVSKQVG-PNEQGKAQGCISGISSFANIVSPLIFSPLTALFL  399 (438)
Q Consensus       328 ~~~~~~~~--~-~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  399 (438)
                      .++...++  . . ..+.   ..++..+......+..++..|..+ +++|++..+.......+|..+++.+...+.+..+
T Consensus        95 ~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g  174 (460)
T PRK11462         95 VLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIG  174 (460)
T ss_pred             HHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            66654442  1 1 2222   345567777777888888888776 6789999999999999999999888887777654

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.58  E-value=0.00076  Score=64.23  Aligned_cols=237  Identities=11%  Similarity=0.098  Sum_probs=141.4

Q ss_pred             HHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhc--c-------cch-------------------hHHHHHHHH
Q 013707           63 GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR--R-------SIS-------------------FFYAYYALR  114 (438)
Q Consensus        63 ~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~--~-------~~~-------------------~~~~l~~~r  114 (438)
                      ...+......+++|+++|.+++-+....+.....+.++.  |       +..                   ..|...+..
T Consensus        71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY  150 (491)
T PF03219_consen   71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY  150 (491)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence            334556779999999999998887776665555555442  1       100                   012222333


Q ss_pred             HhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHhh-------------HHHHHH-HHHHHH
Q 013707          115 TLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLS-------------TTSAFQ-AATIVS  180 (438)
Q Consensus       115 ~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~~-------------w~~~f~-~~~~~~  180 (438)
                      +..-+.|.-...-.-..+..|.++.+|-.|..++...+.++|.++++.+..+++             |...+. +.++..
T Consensus       151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~  230 (491)
T PF03219_consen  151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVL  230 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHH
Confidence            333331211222245788999999999999999999999999999887765542             322221 111111


Q ss_pred             --HHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHH
Q 013707          181 --MLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFS  258 (438)
Q Consensus       181 --~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (438)
                        .+........+.+...++++.                  .+...++++++.+.+.++.++.+.++|.+..+.+....+
T Consensus       231 ~~g~~i~~~~~~~~~~vl~~~~~------------------~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Y  292 (491)
T PF03219_consen  231 ILGIVIILLYRYMNKNVLTDPRF------------------YPSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAY  292 (491)
T ss_pred             HHHHHHHHHHHHHHHHccCcccc------------------chhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHH
Confidence              111122222333222111110                  001111222334457788888999999999999888888


Q ss_pred             HhhhchhhHHHHHHHHhHcCCChhH---HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q 013707          259 GLSEGGMQASFLYFLKAQFHFNKNQ---FADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSL  318 (438)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  318 (438)
                      +.....+....-..+++.+.-+.+.   .|......++..++.. ++++.+.+|+|-+....+
T Consensus       293 gi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~-~l~~~iir~~GW~~~Ali  354 (491)
T PF03219_consen  293 GISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMM-FLSSNIIRRFGWRTAALI  354 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHH
Confidence            8888888777777777765433222   2555566677777766 777888899887665443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.54  E-value=7e-07  Score=82.97  Aligned_cols=151  Identities=13%  Similarity=0.120  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      +|.+..+++..++...+.++....+..|.+..       .+.+....++.......+.+++.+++.++++|+|+|+++.+
T Consensus       235 Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~-------lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~  307 (467)
T COG2211         235 NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYV-------LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLI  307 (467)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhheeEEEE-------cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHH
Confidence            55666667777777777777777777776543       23334555667777788888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccc-------hhHHHHHHHHHHHhhhhh
Q 013707           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ-------RASAFGILLGVLSASFVC  159 (438)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~-------r~~~~~~~~~~~~~g~~~  159 (438)
                      +.++..++.++..+.+. +..+..++..++.++ +.+...+...++++|..+-+|       -|...+......=+|..+
T Consensus       308 ~~~~~~i~~~~~~f~~~-~~~~l~~~~~~i~~~-g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~al  385 (467)
T COG2211         308 GLLLLAVGYLLLYFTPA-GSVVLIVVALIIAGV-GTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLAL  385 (467)
T ss_pred             HHHHHHHHHHHHHhhcC-cchHHHHHHHHHHHH-HhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence            99999999999998872 227888888899999 889999999999999887432       345556666555666666


Q ss_pred             hHhhhHH
Q 013707          160 GTLAARF  166 (438)
Q Consensus       160 g~~l~~~  166 (438)
                      +..+.++
T Consensus       386 a~~~~g~  392 (467)
T COG2211         386 AGFIPGW  392 (467)
T ss_pred             HHHHHHH
Confidence            6554443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.51  E-value=4.6e-06  Score=73.78  Aligned_cols=166  Identities=17%  Similarity=0.151  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhccccccc-CcchHhHHHHH
Q 013707           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAMLTLPLT   89 (438)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grk~~l~~~~~   89 (438)
                      +.+.+-.-+..+..+....-+|.+..        |.+.|..+.|.+.+...+.+...++....+++|. ++|+..+...+
T Consensus       211 W~vtLfmGlqS~~~Y~~~~WLP~ili--------~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~  282 (395)
T COG2807         211 WQVTLFMGLQSLLYYIVIGWLPAILI--------DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALL  282 (395)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHH--------HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            33344344555666777778888877        4577788899999999999999999999999965 57777778888


Q ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccc-hhHHHHHHHHHHHhhhhhhHhhhHHh-
Q 013707           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ-RASAFGILLGVLSASFVCGTLAARFL-  167 (438)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~g~~l~~~~-  167 (438)
                      .+.++...+.+.|....++    .-++.|+ +.|..+|.....+.+-.++.+ -++-.+..|....+=...||.+.|++ 
T Consensus       283 ~~l~G~~G~~~~P~~~~~l----w~~llG~-G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lh  357 (395)
T COG2807         283 LMLVGLVGLLLAPGQLPIL----WALLLGL-GQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLH  357 (395)
T ss_pred             HHHHHHHHHHHhhhhHHHH----HHHHHhC-ccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHH
Confidence            8888888888887733222    2488999 888889999999998887544 34444555544444456689988886 


Q ss_pred             ----hHHHHHHHHHHHHHHHHHHHHH
Q 013707          168 ----STTSAFQAATIVSMLAAAYMRV  189 (438)
Q Consensus       168 ----~w~~~f~~~~~~~~i~~~~~~~  189 (438)
                          +|+.+........++..+..+.
T Consensus       358 Da~gsw~~~~~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         358 DATGSWSAPLVLLALATLLMLIFGLR  383 (395)
T ss_pred             HhcCChHHHHHHHHHHHHHHHHHHhh
Confidence                7888888777666555544443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.47  E-value=1.2e-05  Score=69.20  Aligned_cols=125  Identities=12%  Similarity=0.184  Sum_probs=89.9

Q ss_pred             HHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcc-------cchHHH
Q 013707          268 SFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW-------SAWVPY  340 (438)
Q Consensus       268 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  340 (438)
                      ....-+++.+|+|.+|...+-....++..+ + +..|.+.|+.|++.++.+|.....+++..+...-       +.|...
T Consensus        23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~  100 (250)
T PF06813_consen   23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-G-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMC  100 (250)
T ss_pred             hhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-c-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHH
Confidence            345557778999999999888888888776 4 6779999999999999999999999998887642       122222


Q ss_pred             H-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHH
Q 013707          341 A-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  395 (438)
Q Consensus       341 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  395 (438)
                      + ..+.+.+.............+.+| ++||++.|+.-....+++++-..+...++
T Consensus       101 ~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen  101 LFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             HHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence            2 223333333344454555567888 68999999999998877666555544443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.43  E-value=1.4e-05  Score=72.39  Aligned_cols=167  Identities=19%  Similarity=0.172  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhccccc-ccCcchHhHHHHH
Q 013707           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD-QYGRKAMLTLPLT   89 (438)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~D-r~Grk~~l~~~~~   89 (438)
                      ..++...++..++.++.-+++.+|.       .+-++.+..+..-+.+....+.+++-...|++.. |.++|+.-.+++.
T Consensus       211 ~~f~~fl~l~t~a~~~QD~iLEPyg-------g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~  283 (403)
T PF03209_consen  211 RRFFVFLFLGTLAFFMQDVILEPYG-------GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCL  283 (403)
T ss_pred             hHHHHHHHHHHHHHHhhHHHcCCch-------hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence            3445556677777777777777774       4466777888888899999999999999998877 6788888888888


Q ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh--
Q 013707           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--  167 (438)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~--  167 (438)
                      ..+++..+..++....+.+.+...-++.|+ +.|.+.....+..-|..++++.|..+|.+.+.+.++..+|..+++..  
T Consensus       284 ~~~~~f~lii~a~~~~~~~~~~~~~~l~G~-g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D  362 (403)
T PF03209_consen  284 LGALAFALIILAGPLGSPWLFRPGVFLLGL-GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD  362 (403)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHH-hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888777766655333337889999999999 89999999999999999999999999999999988888887777652  


Q ss_pred             ------------hHHHHHHHHHHHHHHHHH
Q 013707          168 ------------STTSAFQAATIVSMLAAA  185 (438)
Q Consensus       168 ------------~w~~~f~~~~~~~~i~~~  185 (438)
                                  ++..+|.+.++..+++..
T Consensus       363 ~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~  392 (403)
T PF03209_consen  363 LVRALFGNSPALAYGVVFALEAVLLLAALV  392 (403)
T ss_pred             HHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence                        456677777666544433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.38  E-value=1.9e-05  Score=77.97  Aligned_cols=166  Identities=11%  Similarity=0.041  Sum_probs=117.5

Q ss_pred             hhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHHHHHHhHhcccc---
Q 013707          261 SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSLGLFAACINMFICSISWSA---  336 (438)
Q Consensus       261 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---  336 (438)
                      +++++...+..|+.+.+|++...+..++.......-+.. +++++++|+ +|+++.+.++.++..++..++.+....   
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~p-ilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~   80 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTP-LIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG   80 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            466778888899888899999888777776666666655 778899995 699999999999999998887764311   


Q ss_pred             -----hHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCc---chhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCCCC
Q 013707          337 -----WVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNE---QGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNF  407 (438)
Q Consensus       337 -----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~  407 (438)
                           ...+. +.+...|.+.+-|...+...|.+++++   +-+.+.++....++|+.+++.+.+++-+..+..+. +..
T Consensus        81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~-~~~  159 (654)
T TIGR00926        81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGC-QDC  159 (654)
T ss_pred             cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-Ccc
Confidence                 11222 566778888888999999988887543   56788888888999999999999888654321110 011


Q ss_pred             CchHHHHHHHHHHHHHHHHHh
Q 013707          408 PGFSIMCIGLASVRAFTYELL  428 (438)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~  428 (438)
                      ....+.+.+++++++++....
T Consensus       160 ~~~aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       160 YPLAFGVPAILMILALIVFMA  180 (654)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            233455555555555555443

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.32  E-value=2.4e-06  Score=58.72  Aligned_cols=68  Identities=21%  Similarity=0.246  Sum_probs=57.8

Q ss_pred             HHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHH
Q 013707           15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (438)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~   90 (438)
                      ...++...+.+...|.+|.+.+        +.+.+..++|.+.++..+...++++++|.++||++|++..+.....
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~--------~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLK--------QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhh--------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            4455666778889999999976        5688889999999999999999999999999999998887765543

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.27  E-value=4.2e-06  Score=57.94  Aligned_cols=75  Identities=20%  Similarity=0.285  Sum_probs=67.8

Q ss_pred             HhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHh
Q 013707           21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY  100 (438)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~  100 (438)
                      .++...+.|.+|.+.+        |.+++..+.|++.+.+.+|++++++...++.++..+++.+..+.+...+..+.+++
T Consensus         5 GigRFayTplLP~M~~--------~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~   76 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQA--------DGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL   76 (85)
T ss_pred             hhHHHHHHhHhHHHHH--------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            4566788899999976        55777889999999999999999999999999988899999999999999999999


Q ss_pred             ccc
Q 013707          101 RRS  103 (438)
Q Consensus       101 ~~~  103 (438)
                      .++
T Consensus        77 ~~~   79 (85)
T PF06779_consen   77 THS   79 (85)
T ss_pred             Hhc
Confidence            988

Note that many members are hypothetical proteins.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.27  E-value=2.2e-05  Score=62.20  Aligned_cols=102  Identities=17%  Similarity=0.188  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccC
Q 013707           58 AIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI  137 (438)
Q Consensus        58 s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~  137 (438)
                      ++......+++++.+.+.++.|.|+.++++.+.+.+-.... +-++   .+.++.+-.+.|+ +.+..+++...++.+..
T Consensus        44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~---~~~l~~~s~l~G~-~~a~lW~aqg~ylt~~s  118 (156)
T PF05978_consen   44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPN---SYTLYPASALLGF-GAALLWTAQGTYLTSYS  118 (156)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhhh---HHHHHHHHHHHhh-hhHHhhHhhhHHHHHcC
Confidence            34455556667777888999999999999999887555443 4556   6889999999999 99999999999999999


Q ss_pred             CccchhHHHHHHHHHHHhhhhhhHhhh
Q 013707          138 SERQRASAFGILLGVLSASFVCGTLAA  164 (438)
Q Consensus       138 ~~~~r~~~~~~~~~~~~~g~~~g~~l~  164 (438)
                      ++++|++..++.......+.++|.++.
T Consensus       119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen  119 TEETIGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             CHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998888888888887654

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.20  E-value=6.5e-05  Score=70.30  Aligned_cols=149  Identities=15%  Similarity=0.157  Sum_probs=109.1

Q ss_pred             chhHHHHHHHHHHHhhhchhhHHHHHHHHh-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhch-hhHHHHHHHHH
Q 013707          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKA-QFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE-AKLLSLGLFAA  323 (438)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~  323 (438)
                      |.++...+..++............-+|+++ ..+-+.+..|++.+...++..+.+ +..++...|.+. |+-++.+.+++
T Consensus        34 rsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~-liF~~Ws~k~~~~k~Pli~s~ii~  112 (488)
T KOG2325|consen   34 RSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFS-LIFGIWSNKTGSVKKPLIVSFLIA  112 (488)
T ss_pred             HhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcc-hhhcccccccCCcccCHHHHHHHH
Confidence            446667777777777777776666677765 246677778999999999999999 777888888775 77888999999


Q ss_pred             HHHHHHh-Hhc--ccc--hHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          324 CINMFIC-SIS--WSA--WVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       324 ~~~~~~~-~~~--~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      .++.++. .+.  ++.  +.+.. -++.|++.+. .....+++++..-.++|.++++..+..+.+|.++||.+...+..
T Consensus       113 ~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~  190 (488)
T KOG2325|consen  113 IIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP  190 (488)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence            9998887 332  221  22222 2455555444 45677888887778999999999988888999999877655443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.19  E-value=4.8e-05  Score=69.46  Aligned_cols=148  Identities=14%  Similarity=-0.008  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHhhhch---hhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 013707          248 LSQAAVVAFFSGLSEGG---MQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (438)
Q Consensus       248 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  324 (438)
                      .|..++...+..+....   .+.-...|..+.|| +...+-++..++.+..+... +.+-|+.||+|-|....++....+
T Consensus        43 RW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~g-f~~mw~ldk~GLR~a~llgt~ln~  120 (480)
T KOG2563|consen   43 RWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFG-FAAMWILDKFGLRTALLLGTVLNG  120 (480)
T ss_pred             HhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHh-hHHHHhhcccchHHHHHHHHHHHH
Confidence            34444444444443322   23334556677778 66667788888888888888 777799999999999999999999


Q ss_pred             HHHHHhHhcccc---hHHH--HH----HHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHH
Q 013707          325 INMFICSISWSA---WVPY--AT----TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  395 (438)
Q Consensus       325 ~~~~~~~~~~~~---~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  395 (438)
                      ++..+=..+..+   ..+.  +.    .+.+...........-....-+|+++|..+..+..+.+.+|.++|..+-..+.
T Consensus       121 iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV  200 (480)
T KOG2563|consen  121 IGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILV  200 (480)
T ss_pred             HHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceec
Confidence            988775554322   1112  11    22222222222222233445689999999999999999999999988888877


Q ss_pred             HH
Q 013707          396 AL  397 (438)
Q Consensus       396 ~~  397 (438)
                      .+
T Consensus       201 ~~  202 (480)
T KOG2563|consen  201 PS  202 (480)
T ss_pred             CC
Confidence            75

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.18  E-value=1.7e-05  Score=72.35  Aligned_cols=118  Identities=14%  Similarity=0.153  Sum_probs=94.6

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhccc---c--hHHHH---HHHHHhhhh
Q 013707          279 FNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWS---A--WVPYA---TTAFSVLVV  350 (438)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~---~~~~~~~~~  350 (438)
                      +++...+.+..+..++.++++ ++.|++.||+|||++.-..++++.++.+..+....   .  .+..+   -.++|++.+
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQ-l~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIG  159 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQ-LFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIG  159 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHH-HHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhcccc
Confidence            556666888899999999999 88899999999999999888888888876665331   1  11111   378899999


Q ss_pred             hhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          351 FATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      .-+|...+..+|...++.||+-.+..-+.+..|...|..+.-.+...
T Consensus       160 GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~  206 (538)
T KOG0252|consen  160 GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAI  206 (538)
T ss_pred             CCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHH
Confidence            99999999999999999999999998888888877777665554443

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.16  E-value=2.7e-05  Score=53.54  Aligned_cols=70  Identities=21%  Similarity=0.251  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 013707          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (438)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  322 (438)
                      .-...++...+......++|.|+++ .|+|+.++|.+.++..+...++. ++.|.++||.++++........
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~-pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAP-PLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCccHHHHHHHHH
Confidence            3455667777888889999999998 69999999999999999999998 8889999999998877665543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=98.02  E-value=0.001  Score=62.78  Aligned_cols=50  Identities=12%  Similarity=0.096  Sum_probs=41.3

Q ss_pred             HHHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHh
Q 013707          341 ATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLI  390 (438)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~  390 (438)
                      .++++|+..|........+..+.+++++|..+-.+....-.+|-.+|..+
T Consensus       378 ~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       378 LMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37888999999999999999999999999888887777777777777654

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.96  E-value=3.2e-05  Score=66.63  Aligned_cols=320  Identities=15%  Similarity=0.055  Sum_probs=152.6

Q ss_pred             HHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhh
Q 013707           54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV  133 (438)
Q Consensus        54 g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i  133 (438)
                      |.+.-+--+..++..+......||+---.=..+..++.+.+..+.+++++   .++-+.+-.+..+ ++|.-...-.++-
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s---~~~sL~GV~~aSi-ssGlGEiTFL~ls  140 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNS---VPMSLLGVVFASI-SSGLGEITFLALS  140 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccc---hhHHHhhhhhhhh-cCCcceeehhhhh
Confidence            55556667777888888888899875433334556677888888999998   7777777777776 6555543333333


Q ss_pred             hccCCccchhHHHHHHHHHHHhhhhhhHhhhHH------hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC-CCCcc
Q 013707          134 ADNISERQRASAFGILLGVLSASFVCGTLAARF------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDD-DLTRP  206 (438)
Q Consensus       134 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~------~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~  206 (438)
                      + .+++    ...+.++.+.+.+.++|..--..      ++-|...++...+..+.+...++.+++++...... ++..+
T Consensus       141 s-~Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~ptl~~~~~  215 (409)
T KOG3880|consen  141 S-RYPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYSPTLQPSTE  215 (409)
T ss_pred             c-cCCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccccCCCcCccce
Confidence            3 2222    22333444444444444322111      24466666666665555455555555544332111 00111


Q ss_pred             cchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHH-HHHHHHh-HcCCChh--
Q 013707          207 IITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQAS-FLYFLKA-QFHFNKN--  282 (438)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~g~~~~--  282 (438)
                      ...+...+     .+..+++...+.....++-++.+  +| +...++-.+...+..+..+.- .+..+-+ ..|.+..  
T Consensus       216 ~~~~~~~~-----~~a~e~~sv~s~~~~~~e~~~~i--~p-ll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~  287 (409)
T KOG3880|consen  216 IIPSQYLP-----FEAAEEKSVPSRRLGLKETLKRI--KP-LLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKD  287 (409)
T ss_pred             eccCCCCc-----ccccccccCchhhhcHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchh
Confidence            11111000     00000110111112223322222  12 222222222333333333222 1211110 1133222  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHhhch---hhHHHHHHH---HHHHHHHHhHhcccchHHHHH-HHHHhhhhhhHH
Q 013707          283 -QFADLMLIAGLAGTISQLLFMPLLAPILGE---AKLLSLGLF---AACINMFICSISWSAWVPYAT-TAFSVLVVFATP  354 (438)
Q Consensus       283 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  354 (438)
                       |.-+....+.++..+.+      =+-|+=+   .+.+.+-..   +..+.-...++.++.|...+. +.=|+..|..+.
T Consensus       288 sqYRwyqvlYQlGVFiSR------SS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYV  361 (409)
T KOG3880|consen  288 SQYRWYQVLYQLGVFISR------SSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYV  361 (409)
T ss_pred             hcchhhheeeeeeEEEEe------ccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHH
Confidence             23344444444433322      1112211   122211111   112222334455666655553 444777777777


Q ss_pred             HHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          355 SFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       355 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      ..+--+.+-.++++|--+++........|..++..++-.+.+
T Consensus       362 NTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh~  403 (409)
T KOG3880|consen  362 NTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLHN  403 (409)
T ss_pred             HHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccchh
Confidence            777777777888999999998888888877777766544433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.94  E-value=0.00038  Score=66.03  Aligned_cols=131  Identities=20%  Similarity=0.292  Sum_probs=95.1

Q ss_pred             hHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----chhhHHHHHHHHHHHHHHHhHhccc----c
Q 013707          266 QASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-----GEAKLLSLGLFAACINMFICSISWS----A  336 (438)
Q Consensus       266 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~  336 (438)
                      ..-..+|+++.+|.++.+...+.....+--.+ . ++.|.++|-+     +||..+.++.++..++...+...+.    .
T Consensus         9 ~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~   86 (433)
T PF03092_consen    9 RLAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-K-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA   86 (433)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-h-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence            44456788888999999988888777776666 4 5678999976     3566777777777666665555433    2


Q ss_pred             hHHH-HHHHHHhhhhhhHHHHHHHHhhcC--CCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          337 WVPY-ATTAFSVLVVFATPSFRSIVSKQV--GPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       337 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      .... ..++..++.........+...|..  .++.+|...+.......+|+.++..+.|.+.+..
T Consensus        87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~  151 (433)
T PF03092_consen   87 AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF  151 (433)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence            2222 245566777777777777777665  2233788999999999999999999999998863

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.94  E-value=3.6e-07  Score=87.70  Aligned_cols=111  Identities=13%  Similarity=0.049  Sum_probs=97.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcc---cchHHHH-HHHHHhhhhhhHHHHH
Q 013707          282 NQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW---SAWVPYA-TTAFSVLVVFATPSFR  357 (438)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~  357 (438)
                      .+.+...+...++..++. ++.|.++||+|||+.+..+..+..++.++..+++   +.+.+.+ -++.|++.+...+...
T Consensus        46 ~~~~~~~~~~~~g~~~G~-~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~  124 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGA-LIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP  124 (451)
T ss_pred             HHHHHHHHHHHhhhcccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            456788888899999998 8889999999999999999999999999999988   7766666 5888999999999999


Q ss_pred             HHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHH
Q 013707          358 SIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSP  393 (438)
Q Consensus       358 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~  393 (438)
                      .++.|..|+++||+..++.+....+|..++..+.-.
T Consensus       125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~  160 (451)
T PF00083_consen  125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYI  160 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999888888887766533

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.91  E-value=0.00032  Score=66.39  Aligned_cols=128  Identities=16%  Similarity=0.155  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCcchh
Q 013707          292 GLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGK  371 (438)
Q Consensus       292 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  371 (438)
                      ++...+.+ ...|.++||+|||..+........+..+...+..  |...+..-...+.........++++|....++|..
T Consensus        72 ~~~~~i~s-~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~~~~l~g~~~~~~s~~~a~vadis~~~~R~~  148 (463)
T KOG2816|consen   72 GLLTLISS-PLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFLLLGLSGGFSAIFSVGFAYVADISSEEERSS  148 (463)
T ss_pred             HHHHHHHH-hhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhhhcccccchhhhhhhhhhheeeccchhHHHH
Confidence            56666666 7778999999999998888887777776666554  32222222233455667788899999999999999


Q ss_pred             HHHHHhhHhhhhhhhhhHhHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 013707          372 AQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLS  430 (438)
Q Consensus       372 ~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (438)
                      ..|+.+.....+..++|.+.+.+....        .....+.+..+..++.....+...
T Consensus       149 ~~gll~~~~~~~~~~~p~~~~~~~~~~--------~~a~~f~ia~~~~~~~~~y~~~~l  199 (463)
T KOG2816|consen  149 SIGLLSGTFGAGLVIGPALGGYLVKFL--------GIALVFLIAAASGILSLLYMLLFL  199 (463)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999998872        334455666666666666555443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.90  E-value=0.00088  Score=53.11  Aligned_cols=105  Identities=16%  Similarity=0.110  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCc
Q 013707          290 IAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNE  368 (438)
Q Consensus       290 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (438)
                      +......+.. ++.+.+.+++|.|+.+.++.+...+-..... -++.+..+. ..+.|++.+..+...-.++.+..+++.
T Consensus        45 i~Y~~~~~s~-l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~-~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~  122 (156)
T PF05978_consen   45 ILYGSFAISC-LFAPSIVNKLGPKWSMILGSLGYAIYIASFF-YPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET  122 (156)
T ss_pred             HHHHHHHHHH-HhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH
Confidence            3344444555 6778889999999999999988886655543 334455555 789999999999999999999999999


Q ss_pred             chhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          369 QGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       369 ~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      +++..++.-.+.+.+..+|..+.-.+.+
T Consensus       123 ~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen  123 IGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999888888876655543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.84  E-value=0.027  Score=52.65  Aligned_cols=329  Identities=12%  Similarity=0.075  Sum_probs=179.5

Q ss_pred             HHHHHHHHHHHH-HHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhc---------cc-----------c-h---
Q 013707           51 YLSGFQQAIIGL-GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR---------RS-----------I-S---  105 (438)
Q Consensus        51 ~~~g~~~s~~~l-~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~---------~~-----------~-~---  105 (438)
                      ....++-+..-+ ...+..++.+.+.++..|.+++-.-+..+....+++++.         ++           + +   
T Consensus        61 e~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~  140 (509)
T COG3202          61 ESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKW  140 (509)
T ss_pred             hhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcccee
Confidence            445666666666 567788899999999999999988887777777666653         11           0 0   


Q ss_pred             h-----HHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHhh------------
Q 013707          106 F-----FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLS------------  168 (438)
Q Consensus       106 ~-----~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~~------------  168 (438)
                      .     .|..-+.....=+.+.-...-.-.....|.++.+|-.|..+..+...+++..+++.+..+++            
T Consensus       141 ~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~  220 (509)
T COG3202         141 FILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKD  220 (509)
T ss_pred             eeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHH
Confidence            0     02222222222221111122245677899999999999999999999999999887776652            


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccc
Q 013707          169 --TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSV  246 (438)
Q Consensus       169 --w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (438)
                        -+..+.+.+..+.++... .+++.+...+.+.-.                 .+...+++.++.+....+.++.+.++|
T Consensus       221 ~~~~~~~~vi~~~~~i~~~l-~~~~~r~il~~~~f~-----------------~~~~~kk~~~k~k~~~~~s~k~i~~Sk  282 (509)
T COG3202         221 LLLQILFIVIVILGIIAILL-YRYINRNVLTDPLFY-----------------LRAKKKKKKKKLKLGLIESFKMILRSK  282 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHhhcccCcchh-----------------HHHhcccccccccCcHHHHHHHHHhhh
Confidence              123344444443333322 222322111111100                 000011122233446778888888999


Q ss_pred             hhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHH---HHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 013707          247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQF---ADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (438)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (438)
                      .++...+...+++.+...+....-.-.++.+..+.+..   |.+....++...+.....++.+.+|.|-....++.=+.+
T Consensus       283 yL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~  362 (509)
T COG3202         283 YLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVM  362 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHH
Confidence            99988888888888877776665555555444333322   444555556545555567778888877655444333333


Q ss_pred             HHH---HHHhHhcccc-----------hHHHHHHHHHhhhhh-hHHHHHHH-------HhhcCCCCcchhHHHHHhhH-h
Q 013707          324 CIN---MFICSISWSA-----------WVPYATTAFSVLVVF-ATPSFRSI-------VSKQVGPNEQGKAQGCISGI-S  380 (438)
Q Consensus       324 ~~~---~~~~~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~~g~~~g~~~~~-~  380 (438)
                      .++   ++...+..+.           ..+++....|..... .-..=++.       +.--.++|+|.+.=+....+ .
T Consensus       363 litg~lFF~~~~f~~~~~~~~~~~~~~~pl~L~v~iG~iqnvlsK~~KYslfD~tKEma~ipldpe~r~kgKAa~D~i~~  442 (509)
T COG3202         363 LITGVLFFGFAFFNNSIGSIFGGILGSPPLVLAVYIGGIQNVLSKITKYSLFDATKEMAYIPLDPEYRTKGKAAVDVIGG  442 (509)
T ss_pred             HHHHHHHHHHHHHHhhhhhhccccccCCchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHcCcCCHhHHhhccchhhhhhh
Confidence            222   2222222110           011111122221111 11111111       11124668887777777644 4


Q ss_pred             hhhhhhhhHhHHHHHHH
Q 013707          381 SFANIVSPLIFSPLTAL  397 (438)
Q Consensus       381 ~~g~~~g~~~~g~l~~~  397 (438)
                      .+|-.+|..+...+...
T Consensus       443 k~GKSiGSli~~~~~~i  459 (509)
T COG3202         443 KLGKSIGSLIQSLLFII  459 (509)
T ss_pred             cccccHHHHHHHHHHhe
Confidence            77777777765555443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.78  E-value=0.005  Score=56.34  Aligned_cols=130  Identities=12%  Similarity=0.070  Sum_probs=68.1

Q ss_pred             hchhhHHHHHHHHhHcCC---ChhHHHHHHHH-HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhH------
Q 013707          262 EGGMQASFLYFLKAQFHF---NKNQFADLMLI-AGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICS------  331 (438)
Q Consensus       262 ~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------  331 (438)
                      +.......|-+..+..+-   +....-..... ..+...+|. ....++  +...+|.+.+...+-.+..-++.      
T Consensus       259 y~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~-~~a~~~--~~~~~r~l~i~v~lR~lfiPlF~~cn~~~  335 (406)
T KOG1479|consen  259 YFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGS-ILAALL--TWPDPRKLTIPVLLRLLFIPLFLLCNYPP  335 (406)
T ss_pred             eeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhh-hhhhcc--cCCCCceehHHHHHHHHHHHHHHHhccCC
Confidence            333444556666554322   22222333334 566666665 444443  23333333333332222222222      


Q ss_pred             ----hcccchHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHH
Q 013707          332 ----ISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  395 (438)
Q Consensus       332 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~  395 (438)
                          +.++.|......++++..|-.......+..+.+|++++-.+-.+....-..|-+.|. +.+++.
T Consensus       336 ~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~-~~s~l~  402 (406)
T KOG1479|consen  336 LPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGS-LLSWVF  402 (406)
T ss_pred             CCceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhh-HHHHHH
Confidence                122334444478889999998899999999999888776555555555454444444 444443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.56  E-value=0.0011  Score=61.85  Aligned_cols=104  Identities=16%  Similarity=0.142  Sum_probs=78.5

Q ss_pred             hHhHHHHHHHHHHHHHHHhcccch------hHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCcc---chhHHHHHHHHH
Q 013707           82 AMLTLPLTLSIIPLAILAYRRSIS------FFYAYYALRTLTAMVCEGSINCLALAYVADNISER---QRASAFGILLGV  152 (438)
Q Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~  152 (438)
                      |.++++.++..+|.++..++....      ....++++-.+.++ |.|..-|...++.+|.++++   +|.+.+.++..+
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~-G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~   80 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAV-GTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG   80 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHH-HHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHh-ccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence            567788888888888855442211      13678888889999 89999999999999999865   466677888899


Q ss_pred             HHhhhhhhHhhhHHh----hHHHHHHHHHHHHHHHHHH
Q 013707          153 LSASFVCGTLAARFL----STTSAFQAATIVSMLAAAY  186 (438)
Q Consensus       153 ~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~i~~~~  186 (438)
                      .++|..+++.+..++    +|...|.+.++..+++.+.
T Consensus        81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~  118 (372)
T PF00854_consen   81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIV  118 (372)
T ss_dssp             HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHH
Confidence            999999998777664    7999999988776655443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.55  E-value=0.005  Score=55.24  Aligned_cols=136  Identities=16%  Similarity=0.156  Sum_probs=98.1

Q ss_pred             hhhchhhHHHHHHHHhHcCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhccc--
Q 013707          260 LSEGGMQASFLYFLKAQFHFNK--NQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWS--  335 (438)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  335 (438)
                      ..........+.+..+ .+.+.  ...+.......+...++. +..|++.||.|||+.+..+......+.+...+..+  
T Consensus        16 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (338)
T COG0477          16 LDLGLLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGS-LLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVG   93 (338)
T ss_pred             HhcchHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHh-hhhhhccccccchHHHHHHHHHHHHHHHHHHhCccch
Confidence            3444445556666655 34444  467888888888888887 88899999999987777777654555455555554  


Q ss_pred             chHHHH-HHHHHhhhhhhHHHHHHHHhhcCCC-CcchhHHHHHhh-HhhhhhhhhhHhHHHHHHH
Q 013707          336 AWVPYA-TTAFSVLVVFATPSFRSIVSKQVGP-NEQGKAQGCISG-ISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       336 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~-~~~~g~~~g~~~~g~l~~~  397 (438)
                      .+.... ....+++.+...+...++..+..|+ ++|+...+.... ....+..++|.+.+.+.+.
T Consensus        94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477          94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333 3446788888889999999999987 678888888888 5788888888777777665

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.52  E-value=0.0092  Score=55.12  Aligned_cols=138  Identities=12%  Similarity=0.052  Sum_probs=102.4

Q ss_pred             HHhhhchhhHHHHHHHHhH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccc
Q 013707          258 SGLSEGGMQASFLYFLKAQ-FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSA  336 (438)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (438)
                      +.--+-....++..|+.+. .|++..+...-.-....=.-+...+....+.|.++.|++++.+.+...+...++.+.++.
T Consensus        15 f~~~frPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv   94 (412)
T PF01770_consen   15 FFKEFRPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSV   94 (412)
T ss_pred             HHHhcCCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcH
Confidence            3334556788899999886 799988875432222222222233556688999999999999999999888888888877


Q ss_pred             hHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          337 WVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       337 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      +.+-+ -++.|...+. ....++++-..+|+++--++.+.......+|..++..++=.+++
T Consensus        95 ~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs  154 (412)
T PF01770_consen   95 LAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS  154 (412)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66655 4666665554 67778888888899999999999999999888888877665555

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.40  E-value=0.0021  Score=44.67  Aligned_cols=77  Identities=14%  Similarity=0.118  Sum_probs=64.7

Q ss_pred             hhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchH
Q 013707          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWV  338 (438)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (438)
                      .+-+.+...+|...+| .++|..+.|++-+.+.++..++. +...++.++.++++.+..+.+...+..+.+++.++.+.
T Consensus         6 igRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GA-l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~   82 (85)
T PF06779_consen    6 IGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGA-LLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWL   82 (85)
T ss_pred             hHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            3444566677777776 69999999999999999999999 77778888888889999999999999999998877654

Note that many members are hypothetical proteins.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.40  E-value=0.05  Score=53.25  Aligned_cols=129  Identities=19%  Similarity=0.182  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHhhhhccccccc-CcchHhHHHHHHHHHHHHHHHhcc----------------------cchhHHHHHH
Q 013707           56 QQAIIGLGTLVMMPVIGNLSDQY-GRKAMLTLPLTLSIIPLAILAYRR----------------------SISFFYAYYA  112 (438)
Q Consensus        56 ~~s~~~l~~~~~~~~~G~l~Dr~-Grk~~l~~~~~~~~~~~~~~~~~~----------------------~~~~~~~l~~  112 (438)
                      ..+.+.-......+..+.++|-| ||-+.+.++.++..++..+..++.                      +......++.
T Consensus        78 ~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~  157 (571)
T KOG1237|consen   78 NVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYG  157 (571)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHH
Confidence            34444445555667888999975 999999988888877755443321                      1012346777


Q ss_pred             HHHhhhhcchhhHhhhhhHhhhccCC---ccc---hhHHHHHHHHHHHhhhhhhHhhhHH----hhHHHHHHHHHHHHHH
Q 013707          113 LRTLTAMVCEGSINCLALAYVADNIS---ERQ---RASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAATIVSML  182 (438)
Q Consensus       113 ~r~l~G~~~~~~~~~~~~~~i~~~~~---~~~---r~~~~~~~~~~~~~g~~~g~~l~~~----~~w~~~f~~~~~~~~i  182 (438)
                      +.-+..+ |.|..-|...+.-+|.++   +++   +...+.++....+.|..++-.+-.+    .+|.+.|.+..+...+
T Consensus       158 ~l~lia~-G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~l  236 (571)
T KOG1237|consen  158 ALYLIAL-GAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNAL  236 (571)
T ss_pred             HHHHhee-ccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHH
Confidence            7777777 888889999999999998   322   2356778888888888877655544    4898888887766555


Q ss_pred             HHH
Q 013707          183 AAA  185 (438)
Q Consensus       183 ~~~  185 (438)
                      +.+
T Consensus       237 ai~  239 (571)
T KOG1237|consen  237 AIL  239 (571)
T ss_pred             HHH
Confidence            433

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.33  E-value=0.027  Score=53.63  Aligned_cols=125  Identities=11%  Similarity=0.002  Sum_probs=82.9

Q ss_pred             HHhHcCC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhc----cc--------
Q 013707          273 LKAQFHF-----NKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS----WS--------  335 (438)
Q Consensus       273 ~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--------  335 (438)
                      ++|.+..     +.+...++.+...+...+.-.++.+++++|++|+++...........+.++++.    .+        
T Consensus        29 lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~  108 (472)
T TIGR00769        29 TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALA  108 (472)
T ss_pred             hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHH
Confidence            4555544     346677777766666666523677899999999998776655555554444432    00        


Q ss_pred             -------------------chHHHHH-HHHHhhhhhhHH-HHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHH
Q 013707          336 -------------------AWVPYAT-TAFSVLVVFATP-SFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  394 (438)
Q Consensus       336 -------------------~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l  394 (438)
                                         .|..-.. ....+......+ ..+++++|....++..|-+++.....++|..+++.+..++
T Consensus       109 ~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~  188 (472)
T TIGR00769       109 DKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF  188 (472)
T ss_pred             HHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               1111111 111222333333 7888999999999999999999999999999999988887


Q ss_pred             HHH
Q 013707          395 TAL  397 (438)
Q Consensus       395 ~~~  397 (438)
                      .+.
T Consensus       189 ~~~  191 (472)
T TIGR00769       189 SKL  191 (472)
T ss_pred             HHh
Confidence            753

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK03612 spermidine synthase; Provisional

Probab=97.23  E-value=0.052  Score=52.75  Aligned_cols=145  Identities=12%  Similarity=0.098  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHH---HHHHHHHHHH
Q 013707          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS---LGLFAACINM  327 (438)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~  327 (438)
                      ..+..++.+++.........-.+...+|.+..+.+.+.+.+..+..+|+ .+.+++.++..++....   ++.+......
T Consensus        19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs-~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~   97 (521)
T PRK03612         19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGA-LLSKYLLRDAAAGFVAVELLLALLGGLSAL   97 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555566666666667777777789999998998888888888888 66666653322222111   1111111111


Q ss_pred             HH---hHhcccchH-HHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          328 FI---CSISWSAWV-PYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       328 ~~---~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      ++   ..+...... .+. .++.++..|+..|....+..+.. .++.|+..|-......+|+.+|+.+.+++.--
T Consensus        98 ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp  171 (521)
T PRK03612         98 ILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLP  171 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHH
Confidence            11   111111111 111 34556777777777776665432 23456778888899999999999999888763

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.19  E-value=7.1e-05  Score=72.60  Aligned_cols=139  Identities=11%  Similarity=0.101  Sum_probs=2.6

Q ss_pred             hhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcc-----
Q 013707          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW-----  334 (438)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  334 (438)
                      ....++....-.-++++++++..+.|.+.+.+-++..+.. ++..++.+|-.|-+.+-.|.++++++.+++++.+     
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~-~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~   94 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVV-LFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGP   94 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence            3333443333345667799999999999999999999988 5556888887888888999999999988877621     


Q ss_pred             -----------------------------------------c---c-hHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCc
Q 013707          335 -----------------------------------------S---A-WVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNE  368 (438)
Q Consensus       335 -----------------------------------------~---~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (438)
                                                               +   . ..+++ .++.|++....++...+|+-|.+++++
T Consensus        95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~  174 (539)
T PF03137_consen   95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN  174 (539)
T ss_dssp             ---------------------------------------------------------SSS--------------------
T ss_pred             CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc
Confidence                                                     0   0 01112 367788899999999999999999999


Q ss_pred             chhHHHHHhhHhhhhhhhhhHhHHHHHHHHh
Q 013707          369 QGKAQGCISGISSFANIVSPLIFSPLTALFL  399 (438)
Q Consensus       369 ~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  399 (438)
                      .+...|+......+|-++|-.+++...+.+.
T Consensus       175 splYiGi~~~~~~lGPa~Gf~lg~~~L~~yv  205 (539)
T PF03137_consen  175 SPLYIGILYAMSILGPALGFLLGSFCLRIYV  205 (539)
T ss_dssp             -------------------------------
T ss_pred             CccchhhhhHHhhccHHHHHHHHHHHHhcee
Confidence            9999999999999999999888888876543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.09  E-value=0.00051  Score=63.02  Aligned_cols=144  Identities=12%  Similarity=0.086  Sum_probs=107.4

Q ss_pred             hhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hchhh-HHHHHHH
Q 013707          247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI----LGEAK-LLSLGLF  321 (438)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~-~~~~~~~  321 (438)
                      .+.......+...+.+..-..+.|+|+++ .|.+....+.+....-+.+.+.+ ++.|..+||    +|||| .+..+..
T Consensus        33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQ-P~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   33 KLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQ-PLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceec-ccccccccccccccccccchHHHhhH
Confidence            34445555666667777778899999988 69999999999888888999999 788899995    56655 5566667


Q ss_pred             HHHHHHHHhHhcccc--------h-----HHHHH-----HHHHhhhhhhHHHHHHHHhhcCCCCcchh-HHHHHhhHhhh
Q 013707          322 AACINMFICSISWSA--------W-----VPYAT-----TAFSVLVVFATPSFRSIVSKQVGPNEQGK-AQGCISGISSF  382 (438)
Q Consensus       322 ~~~~~~~~~~~~~~~--------~-----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~~~  382 (438)
                      ...++++++.++.+.        .     ..+..     -+.=+..........++..|...++++-+ +++.+.....+
T Consensus       111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av  190 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV  190 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh
Confidence            777788777774321        1     11112     23345666778888999999998888877 99999999999


Q ss_pred             hhhhhhHhHH
Q 013707          383 ANIVSPLIFS  392 (438)
Q Consensus       383 g~~~g~~~~g  392 (438)
                      |+.+|-.+.+
T Consensus       191 GnvLGY~~g~  200 (498)
T KOG0637|consen  191 GNVLGYALGS  200 (498)
T ss_pred             cceeeeeccc
Confidence            9988876665

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.017  Score=54.34  Aligned_cols=109  Identities=17%  Similarity=0.205  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHhhhhccccc---ccCcchHhHHHHHHHHHHHHHHHhcccc---------------hhHHHHHHHHH
Q 013707           54 GFQQAIIGLGTLVMMPVIGNLSD---QYGRKAMLTLPLTLSIIPLAILAYRRSI---------------SFFYAYYALRT  115 (438)
Q Consensus        54 g~~~s~~~l~~~~~~~~~G~l~D---r~Grk~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~r~  115 (438)
                      +.-.-...++..+++.+.+.+++   ++||++.+.++..+..+..++.-.....               ..+....+.-+
T Consensus       282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~  361 (461)
T KOG3098|consen  282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF  361 (461)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence            44344445666666666666665   5799999999888887777765543110               01567788889


Q ss_pred             hhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhh
Q 013707          116 LTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (438)
Q Consensus       116 l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  164 (438)
                      +.|+ +.+......+.++.+.. +++|.++.++...-..++..++-...
T Consensus       362 l~G~-~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~  408 (461)
T KOG3098|consen  362 LLGF-GDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFS  408 (461)
T ss_pred             HHhh-HHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999 99999999999999999 57888888888877777766654433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.92  E-value=0.0035  Score=61.79  Aligned_cols=186  Identities=9%  Similarity=0.059  Sum_probs=130.9

Q ss_pred             cchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 013707          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (438)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  324 (438)
                      .+.+..++....+......++....-.-++++++++..+.|++.+.+-++..+.. ....+...|..|-+++-.|.++++
T Consensus        95 ~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i-~fVsYfG~r~HrPr~Ig~G~~~m~  173 (735)
T KOG3626|consen   95 IKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLI-IFVSYFGSRGHRPRWIGIGLVLMG  173 (735)
T ss_pred             cchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhh-HhHHHhccccCccceeeechhHHH
Confidence            3444444333333333333444444556677899999999999999999888877 555677788888888899999999


Q ss_pred             HHHHHhHhcc-----------------------------------------c----------chHHHH--HHHHHhhhhh
Q 013707          325 INMFICSISW-----------------------------------------S----------AWVPYA--TTAFSVLVVF  351 (438)
Q Consensus       325 ~~~~~~~~~~-----------------------------------------~----------~~~~~~--~~~~~~~~~~  351 (438)
                      ++.++..+.+                                         +          .+.+++  .++.|+|...
T Consensus       174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp  253 (735)
T KOG3626|consen  174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP  253 (735)
T ss_pred             HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence            9988877620                                         0          111222  3677888889


Q ss_pred             hHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHhcC-CC--------CCCCC--chHHHHHHHHHH
Q 013707          352 ATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSK-GA--------PFNFP--GFSIMCIGLASV  420 (438)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~-~~--------~~~~~--~~~~~~~~~~~~  420 (438)
                      .++.-.+++-|.+.+++.....|+..++..+|-++|-.+++.....+.+. ..        |-|..  +.-|++.+.+.+
T Consensus       254 i~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~  333 (735)
T KOG3626|consen  254 IFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLL  333 (735)
T ss_pred             CccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888776554 11        11111  124566666666


Q ss_pred             HHHHHHHhhhh
Q 013707          421 RAFTYELLLSF  431 (438)
Q Consensus       421 ~~~~~~~~~~~  431 (438)
                      +..+..++..+
T Consensus       334 ~~a~p~f~fPk  344 (735)
T KOG3626|consen  334 FSAVPLFFFPK  344 (735)
T ss_pred             HHHHHHHhCcc
Confidence            66665555443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.92  E-value=0.032  Score=51.55  Aligned_cols=110  Identities=12%  Similarity=0.149  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHH--HH---HHHHHHHhcccchhHHHHHHHHHhhhhcchhh
Q 013707           50 IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL--SI---IPLAILAYRRSISFFYAYYALRTLTAMVCEGS  124 (438)
Q Consensus        50 ~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~--~~---~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  124 (438)
                      ..+..+...+|.+|..++.--...+  |+  |+..+.+.+-  ..   +.....-+.++   .|..++.-+..|+ .+|.
T Consensus       280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fips---i~ivf~lif~eGL-lGGa  351 (402)
T PF02487_consen  280 RDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPS---IWIVFVLIFYEGL-LGGA  351 (402)
T ss_pred             HHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH-hhhH
Confidence            3566777788888877775533222  33  4444443332  22   22223334566   8888899999999 7788


Q ss_pred             HhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh
Q 013707          125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (438)
Q Consensus       125 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~  167 (438)
                      .+......+.|-.|+++|..++|..+.+-++|..++..++-.+
T Consensus       352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            8888999999999999999999999999999999988877554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.61  E-value=0.26  Score=42.33  Aligned_cols=50  Identities=0%  Similarity=-0.124  Sum_probs=29.4

Q ss_pred             cchhHHHHHHHHHHHhhhhhh--HhhhH-----H--hhHHHHHHHHHHHHHHHHHHHHH
Q 013707          140 RQRASAFGILLGVLSASFVCG--TLAAR-----F--LSTTSAFQAATIVSMLAAAYMRV  189 (438)
Q Consensus       140 ~~r~~~~~~~~~~~~~g~~~g--~~l~~-----~--~~w~~~f~~~~~~~~i~~~~~~~  189 (438)
                      ++|+........+.++|.++.  |.+-.     .  -.|++.+.+.+++.++.+++..+
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i   60 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYII   60 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555556666666554  33222     1  27999999888877665444333

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.46  E-value=0.64  Score=43.89  Aligned_cols=172  Identities=15%  Similarity=0.145  Sum_probs=100.0

Q ss_pred             hhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 013707          247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACIN  326 (438)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  326 (438)
                      ..+.+.+..++..+..-+.....|.++.+.+.-+-.-.+..-....+..++.+ ...|.+.||..|.+....+....-++
T Consensus         3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~-~~vG~~iD~~~Rl~~~~~~l~~Qn~s   81 (432)
T PF06963_consen    3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFG-PWVGRWIDRSPRLKVIRTSLVVQNLS   81 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhh-HHHHHHHhCCcchhhHHHHHHHHHHH
Confidence            35566778888888888889999999999876565555555556666667767 66678899999887665554433221


Q ss_pred             ----HHHh--Hh-ccc-----chHHHHH----HHHHhhhhhhHHH-----HHHHHhhcC--CCCcchhHHHHHhhHhhhh
Q 013707          327 ----MFIC--SI-SWS-----AWVPYAT----TAFSVLVVFATPS-----FRSIVSKQV--GPNEQGKAQGCISGISSFA  383 (438)
Q Consensus       327 ----~~~~--~~-~~~-----~~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~g~~~g~~~~~~~~g  383 (438)
                          ..++  .+ ..+     .+.....    .+.+.........     -.-++..+.  +++...+.++...-+-.+.
T Consensus        82 v~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~c  161 (432)
T PF06963_consen   82 VAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFC  161 (432)
T ss_pred             HHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHH
Confidence                1111  11 111     2222221    1222211111111     111223333  4455677777777788889


Q ss_pred             hhhhhHhHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013707          384 NIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYEL  427 (438)
Q Consensus       384 ~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (438)
                      ..++|.+.|.+.+..        .......+.++..++....-+
T Consensus       162 kllaPl~vG~l~t~~--------s~~~~~~~i~~~N~~S~~vEy  197 (432)
T PF06963_consen  162 KLLAPLFVGLLMTFA--------SPVIAAIFIAGWNLASVFVEY  197 (432)
T ss_pred             HHHHHHHHHHHhhcc--------CHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998852        222233334445555554443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK03612 spermidine synthase; Provisional

Probab=96.30  E-value=0.29  Score=47.67  Aligned_cols=117  Identities=14%  Similarity=0.003  Sum_probs=66.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHH--HH-HHHHHHHhcccc--hhHHHHHHHHHhhhhcc
Q 013707           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL--SI-IPLAILAYRRSI--SFFYAYYALRTLTAMVC  121 (438)
Q Consensus        47 ~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~--~~-~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~  121 (438)
                      +.+....+.+.+++..+..+|+.+.|++.++--|+.. .+-..+  .+ ++..+.......  .....++..-++.++ .
T Consensus        46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-l  123 (521)
T PRK03612         46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGL-L  123 (521)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            4445667889999999999999998887643222222 111111  11 111111111110  001222334455666 5


Q ss_pred             hhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH
Q 013707          122 EGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (438)
Q Consensus       122 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  166 (438)
                      .|...|....+..+... ++-++..|.+.....+|.++|+++.++
T Consensus       124 ~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~  167 (521)
T PRK03612        124 IGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPF  167 (521)
T ss_pred             HHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHH
Confidence            66777776666654332 234667788888888888888887766

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=96.10  E-value=0.0019  Score=58.42  Aligned_cols=50  Identities=18%  Similarity=0.192  Sum_probs=3.6

Q ss_pred             HHHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHh
Q 013707          341 ATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLI  390 (438)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~  390 (438)
                      .+.++++..|-.......+..+.+++++|..+-.+....-..|-.+|..+
T Consensus       254 ~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l  303 (309)
T PF01733_consen  254 LMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL  303 (309)
T ss_dssp             -------------HHHH---------------------------------
T ss_pred             HHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36788999999889999999999999998888777777777776666644

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.78  E-value=0.075  Score=49.56  Aligned_cols=110  Identities=12%  Similarity=0.002  Sum_probs=79.5

Q ss_pred             hHHHHHHHHHHHHHHHhHhcc---cc------hHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCC---cchhHHHHHhhHh
Q 013707          314 KLLSLGLFAACINMFICSISW---SA------WVPYA-TTAFSVLVVFATPSFRSIVSKQVGPN---EQGKAQGCISGIS  380 (438)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~g~~~~~~  380 (438)
                      +++.++.++..+|.+++.++.   ..      ..+++ ..+.++|.|..-|...++..|.++++   ++.+.+..+....
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567788888888888854432   11      34444 67789999999999999999999876   3567778888999


Q ss_pred             hhhhhhhhHhHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhh
Q 013707          381 SFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSF  431 (438)
Q Consensus       381 ~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (438)
                      ++|..+++.+.+++-++.        .....|.+.++..+++.+..+.-++
T Consensus        82 n~G~~~~~~~~~~i~~~~--------~~~~~f~i~~~~~~~~~~~f~~~~~  124 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNY--------GWFLGFGIPAIGMLLALIVFLSGRK  124 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS---------HHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             hhhhHhhcccchhhcccc--------chhhhhhHHHHHHHHHHHHHHhCCc
Confidence            999999999999887652        3344566666667766666554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=95.76  E-value=0.21  Score=45.13  Aligned_cols=76  Identities=18%  Similarity=0.210  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHH
Q 013707            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (438)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (438)
                      ....++.+.++...+.-+-......++.+..   ....    .....-...-.....+..++.|...|+..|+|++...+
T Consensus        28 ~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~---gnsl----~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L  100 (503)
T KOG2601|consen   28 TVIFLYLGYFLTTWGDRMWEFSVSLFMILLG---GNSL----LLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWL  100 (503)
T ss_pred             eeehhhHHHHHhHhhHhHHHHHHHHHHHHHc---Ccee----hhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHH
Confidence            3445667777777776666666666666542   1112    22233333445567778889999999999999988776


Q ss_pred             HHH
Q 013707           89 TLS   91 (438)
Q Consensus        89 ~~~   91 (438)
                      .+.
T Consensus       101 ~lq  103 (503)
T KOG2601|consen  101 LLQ  103 (503)
T ss_pred             hhc
Confidence            543

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=94.79  E-value=0.47  Score=43.20  Aligned_cols=142  Identities=12%  Similarity=0.068  Sum_probs=81.2

Q ss_pred             cchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhchhhH-HHH
Q 013707          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP-----ILGEAKL-LSL  318 (438)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~-~~~  318 (438)
                      ++.+..+.......+....... .+|..++. -|.|-++.+.......--..  - ++...+.|     |+||||. +.-
T Consensus        30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~fS~ay~P~sL--K-llWaPiVDs~y~k~~GrrksWvvp  104 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAIFSFAYWPFSL--K-LLWAPIVDSVYSKRFGRRKSWVVP  104 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhhhhhhhhHHHH--H-HHHHhhhHHHHHHhhccccceeee
Confidence            4556666666666666665555 77888885 37776665443322211111  1 33345555     9998774 444


Q ss_pred             HHHHHHHHHHHhHhcccch---------HHHH---HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhh
Q 013707          319 GLFAACINMFICSISWSAW---------VPYA---TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIV  386 (438)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~  386 (438)
                      +..+.+..+..++...+.+         ....   .+++-+..+.--.....+.-+..++|+.|-+.......+..|.++
T Consensus       105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL  184 (510)
T KOG3574|consen  105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFL  184 (510)
T ss_pred             hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHh
Confidence            5555555555555432211         1111   244455566666777777777888888887766666666666666


Q ss_pred             hhHhH
Q 013707          387 SPLIF  391 (438)
Q Consensus       387 g~~~~  391 (438)
                      +..+.
T Consensus       185 ~~~if  189 (510)
T KOG3574|consen  185 GNVVF  189 (510)
T ss_pred             hccee
Confidence            55444

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=94.18  E-value=0.2  Score=43.15  Aligned_cols=126  Identities=13%  Similarity=0.063  Sum_probs=72.3

Q ss_pred             HHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhh
Q 013707          271 YFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLV  349 (438)
Q Consensus       271 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  349 (438)
                      +|+-+.+|+...++|.++.......++.+ .+.|-+.||.|||+....-++...++++. -..++..++.. -.+-|+..
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFG-tivgSLaDkqGRKracvtycitYiLsCiT-KhSpqYkVLmVGR~LGGiaT  138 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFG-TIVGSLADKQGRKRACVTYCITYILSCIT-KHSPQYKVLMVGRVLGGIAT  138 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHH-HHHHHHHhhhccccceeeehHHHHHHHHh-hcCCceEEEeehhhhhhHHH
Confidence            34455689999999888776656666666 67789999999998766555555554433 22333333333 35666666


Q ss_pred             hhhHHHHHHH-HhhcCCCC-----cchhHHHHHh-hHhhhhhhhhhHhHHHHHHHH
Q 013707          350 VFATPSFRSI-VSKQVGPN-----EQGKAQGCIS-GISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       350 ~~~~~~~~~~-~~~~~~~~-----~~g~~~g~~~-~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      ...+...-++ +.|..+++     -....++-.. ..+.+-.+++...+..+.|++
T Consensus       139 sLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~  194 (454)
T KOG4332|consen  139 SLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF  194 (454)
T ss_pred             HHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence            6666666665 34443222     1122222221 223444455555555666654

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=93.87  E-value=0.78  Score=43.64  Aligned_cols=149  Identities=14%  Similarity=0.135  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhH-HHHHHHHHHHHHHHHHHhhhhcccccccCcc-hHhH
Q 013707            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAI-YLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK-AMLT   85 (438)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk-~~l~   85 (438)
                      |.++...+..++.++-.-.+.|.+....+.      ++.+.+. ...-....++.++-.+|..+..+.. .-++| +.+.
T Consensus       269 kki~~~~~~vf~~F~vTL~vFPgv~~~i~~------~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~  341 (437)
T TIGR00939       269 TKVWLLAFSVVFVFTVTLSVFPAITTAVTS------SGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLP  341 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCceEEEeec------cCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchH
Confidence            345555666666555555555555333221      1111111 3445677888899988888654431 11222 1333


Q ss_pred             HHHHHHHHH---HHHHHhcc------cchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhh
Q 013707           86 LPLTLSIIP---LAILAYRR------SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS  156 (438)
Q Consensus        86 ~~~~~~~~~---~~~~~~~~------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  156 (438)
                      +..+...+.   .++|..-+      -..+-+..++..++.|+ ..|-.......+..+..+++||..+-.+...+..+|
T Consensus       342 i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gl-tnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~G  420 (437)
T TIGR00939       342 ILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGF-SNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVG  420 (437)
T ss_pred             HHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHH-hhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            333333222   22332221      01124666777899999 889888889999999999999988888888888888


Q ss_pred             hhhhHhhh
Q 013707          157 FVCGTLAA  164 (438)
Q Consensus       157 ~~~g~~l~  164 (438)
                      ..+|..++
T Consensus       421 l~~Gs~l~  428 (437)
T TIGR00939       421 LALGAVLS  428 (437)
T ss_pred             HHHHHHHH
Confidence            88887654

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=93.41  E-value=0.017  Score=48.95  Aligned_cols=145  Identities=14%  Similarity=0.029  Sum_probs=80.8

Q ss_pred             cccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 013707          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (438)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  322 (438)
                      +++-.+....+...+.-......+.+++.|..+.++++.....++-++..+.....+.+..-.--++...|.....|.+.
T Consensus       198 F~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v~~eipwngkrlKayYsaGgii  277 (412)
T KOG4830|consen  198 FGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMVNSEIPWNGKRLKAYYSAGGII  277 (412)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhhcccCCcCcceeeeeeecccHH
Confidence            34455666777777777777778889999988878887777777666666665555422111100111122222233333


Q ss_pred             HHHHHHHhHhcccch---HHHHHHHHHhhhhhhHHHHHHHHhhcCCCC--cchhHHHHHhhHhhhhhhhh
Q 013707          323 ACINMFICSISWSAW---VPYATTAFSVLVVFATPSFRSIVSKQVGPN--EQGKAQGCISGISSFANIVS  387 (438)
Q Consensus       323 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~g~~~g  387 (438)
                      ...+...+.+.+..+   ...+..++|+..........++..+...++  ..+-+.|..+....+...++
T Consensus       278 wifcga~ilLlpr~i~symyAisvfIGIAnAimlvtslsitavli~~~~~~~aFv~GamSF~DKlS~GiA  347 (412)
T KOG4830|consen  278 WIFCGAVILLLPRGIKSYMYAISVFIGIANAIMLVTSLSITAVLINKNTESGAFVYGAMSFFDKLSNGIA  347 (412)
T ss_pred             HHHhhhheeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCceEEEehHHHHHhhcccHH
Confidence            333333333333333   222356678877777666666655555443  34556676666666555444

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=92.33  E-value=7.7  Score=37.52  Aligned_cols=117  Identities=12%  Similarity=0.005  Sum_probs=71.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhc---------ccch-------------
Q 013707          280 NKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS---------WSAW-------------  337 (438)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-------------  337 (438)
                      +++.+..+-....+-..+.-..+..++++++++.++...........+.++++.         ++..             
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            556666654433333333323566799999999887665555444444443331         0000             


Q ss_pred             HHH------HHHHHH----hhhhhh-HHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          338 VPY------ATTAFS----VLVVFA-TPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       338 ~~~------~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      ..+      ...++-    .-.... .-..+.+++|..+.++..+.+++.....++|..+++.+..++.+
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000      001111    111222 23568889999999999999999999999999988888887777

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=91.87  E-value=4.3  Score=40.08  Aligned_cols=146  Identities=12%  Similarity=0.071  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHHHH
Q 013707          249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSLGLFAACINM  327 (438)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~  327 (438)
                      ...+..-.+-..++.+...-+-.|+.+.++.+...+............... +.+++++|- .||.+++.++.++..++.
T Consensus        40 ~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~-l~g~~laD~f~gry~tI~~~s~i~~~G~  118 (571)
T KOG1237|consen   40 PFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLP-LLGAFLADSFLGRYFTINIGSLISLLGL  118 (571)
T ss_pred             HHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            334444555566666666777888888888888766666655555555555 778899995 588888888888887776


Q ss_pred             HHhHhccc--------------------ch-----HHHH-HHHHHhhhhhhHHHHHHHHhhcCCCC----cc--hhHHHH
Q 013707          328 FICSISWS--------------------AW-----VPYA-TTAFSVLVVFATPSFRSIVSKQVGPN----EQ--GKAQGC  375 (438)
Q Consensus       328 ~~~~~~~~--------------------~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--g~~~g~  375 (438)
                      .++.....                    ..     .++. ..+..+|.+..-|...++-.|-++++    .+  .+-+..
T Consensus       119 ~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW  198 (571)
T KOG1237|consen  119 FGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNW  198 (571)
T ss_pred             HHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhH
Confidence            55544210                    00     1112 23445677788899999988888732    22  356666


Q ss_pred             HhhHhhhhhhhhhHhHHHHH
Q 013707          376 ISGISSFANIVSPLIFSPLT  395 (438)
Q Consensus       376 ~~~~~~~g~~~g~~~~g~l~  395 (438)
                      .....+.|..++..+.-++-
T Consensus       199 ~yf~~~~g~l~a~t~~vyiq  218 (571)
T KOG1237|consen  199 FYFSQNGGALLAQTVLVYIQ  218 (571)
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence            66777777777666655553

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=90.35  E-value=11  Score=32.64  Aligned_cols=30  Identities=7%  Similarity=-0.019  Sum_probs=13.9

Q ss_pred             hhchhhHHHHHHHHhHc----CCChhHHHHHHHH
Q 013707          261 SEGGMQASFLYFLKAQF----HFNKNQFADLMLI  290 (438)
Q Consensus       261 ~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~  290 (438)
                      ..++.+..=..|.+++-    +-|.....++++-
T Consensus       193 vlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~  226 (254)
T PF07857_consen  193 VLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSH  226 (254)
T ss_pred             HHHhcccchHHHHHhCccccCCCCCcchheeHHH
Confidence            33444444345666643    3344444445443

The region concerned is approximately 280 residues long.

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=88.45  E-value=19  Score=32.58  Aligned_cols=70  Identities=13%  Similarity=0.050  Sum_probs=49.2

Q ss_pred             HHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCC
Q 013707           64 TLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS  138 (438)
Q Consensus        64 ~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~  138 (438)
                      -...+.+.+.+..++|-|..+.++...+...... =+-+.   +..++-.-...|+ +.+..+..--+|+++...
T Consensus        71 l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~-Nl~pr---~~tlVPa~~~~G~-aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   71 LIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA-NLEPR---YETLVPAGLVLGM-AAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-hcchh---HHhhccHHHhhcc-ccccccccCcceecHHHH
Confidence            3444555557889999999999888776544321 11233   7788888899999 888888777777766654

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=86.93  E-value=30  Score=33.20  Aligned_cols=118  Identities=12%  Similarity=-0.024  Sum_probs=74.4

Q ss_pred             CChhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhc---------cc-----------c-
Q 013707          279 FNKNQFADLMLIAGL-AGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS---------WS-----------A-  336 (438)
Q Consensus       279 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-----------~-  336 (438)
                      .+++.+..+-...-+ ++++.. ++..++.++..+.++...........++++++.         ++           + 
T Consensus        58 ~gae~I~FlK~~~vlP~avif~-~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~  136 (509)
T COG3202          58 QGAESISFLKTWGVLPSAVIFT-IIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPM  136 (509)
T ss_pred             CcchhhHHHHHHHhchHHHHHH-HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCc
Confidence            445666666655555 344444 677799999998887766665555555555441         00           1 


Q ss_pred             -----------hHHHHHHHHH--hhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          337 -----------WVPYATTAFS--VLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       337 -----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                                 |......+..  .+.-...-..+..++|....++..+-+++++...+++..++..+..++.++
T Consensus       137 ~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         137 FLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             cceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                       1111111111  122222335677889999999999999999999998888888888777663

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=85.81  E-value=2.9  Score=37.13  Aligned_cols=73  Identities=15%  Similarity=0.090  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhH
Q 013707           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (438)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~  165 (438)
                      .++.+...+..+.++   ++..++.-+..|+ -+|..+....--+.+-.++++|-.+++....+-++|..++..++-
T Consensus       327 l~ff~~~a~~~ftps---i~ivf~lI~~EGL-lGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal  399 (409)
T KOG3880|consen  327 LLFFLLQAWYWFTPS---IWIVFALILFEGL-LGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL  399 (409)
T ss_pred             HHHHHHHHHHHhccH---HHHHHHHHHHHhh-cCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence            345555667778888   8888999999999 445666666666777778899999999999988888887766653

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=85.39  E-value=14  Score=34.51  Aligned_cols=128  Identities=11%  Similarity=0.124  Sum_probs=80.7

Q ss_pred             hhhhhHHHHHHhhCCCCccchhhHHHHHHHHHH-HHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHH------
Q 013707           27 VVPAITDVTMMALCPGLDECSLAIYLSGFQQAI-IGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA------   99 (438)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~-~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~------   99 (438)
                      ...+.|-+..+.    .++...+.+..-++..+ +.+.-.+|.+.+.++-++= ||...+. .++..+..-+..      
T Consensus       262 TLsiFPg~~~~~----~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~-v~lR~lfiPlF~~cn~~~  335 (406)
T KOG1479|consen  262 TLSIFPGFCSEV----KSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIP-VLLRLLFIPLFLLCNYPP  335 (406)
T ss_pred             eeEecchhhccc----ccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHH-HHHHHHHHHHHHHhccCC
Confidence            334556555442    21222234555666666 8889999877777776653 3433333 332222222222      


Q ss_pred             ---hcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhh
Q 013707          100 ---YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (438)
Q Consensus       100 ---~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  164 (438)
                         +-.+   -++.++.-.+.|+ ..|-.......+..+..|++++..+-.+.......|...|..++
T Consensus       336 ~~v~~~~---~~~~~~l~~~lgl-snGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  336 LPVVFES---DGWFIFLMSLLGL-SNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             CCceecC---chHHHHHHHHHHh-ccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence               1223   4677888899999 88988888999999999988887777777777777777666544

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=84.48  E-value=12  Score=32.04  Aligned_cols=23  Identities=13%  Similarity=0.001  Sum_probs=14.7

Q ss_pred             HHHHHHHHhhchhhHHHHHHHHH
Q 013707          301 LFMPLLAPILGEAKLLSLGLFAA  323 (438)
Q Consensus       301 ~~~~~l~~~~~~~~~~~~~~~~~  323 (438)
                      +.+..++.|+..|++.+.+.++.
T Consensus       258 igGk~lAskIS~rtVt~~ggi~F  280 (294)
T KOG2881|consen  258 IGGKYLASKISVRTVTLIGGILF  280 (294)
T ss_pred             hhhHHHhhhheeEEEEEecchhH
Confidence            44456778888887665555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	438
2cfq_A	417	Lactose permease; transport, transport mechanism,	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	7e-04

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 52/378 (13%), Positives = 99/378 (26%), Gaps = 31/378 (8%)

Query: 54  GFQQAIIGLGTLVMMPVIGNLSDQYG-RKAMLTLPLTLSIIPLAILAYRRSISFFYAYYA 112
           G   A I L +L+  P+ G LSD+ G RK +L +   + ++      +       Y    
Sbjct: 46  GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV 105

Query: 113 LRTLTAMVCEGSIN-CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---S 168
              +  +      N              R+    FG         +  G      +   +
Sbjct: 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTIN 165

Query: 169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPV 228
               F   +  +++ A  +     D   +              T       ++S   + +
Sbjct: 166 NQFVFWLGSGCALILAVLLFFAKTDAPSS-------------ATVANAVGANHSAFSLKL 212

Query: 229 CKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLM 288
             ++     L  L    V         F          A+F     A        F  + 
Sbjct: 213 ALELFRQPKLWFLS-LYVIGVSCTYDVFDQQF------ANFFTSFFATGEQGTRVFGYVT 265

Query: 289 LIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAF-SV 347
            +  L      + F PL+   +G    L L      + +   S + SA            
Sbjct: 266 TMGELLNASI-MFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMF 324

Query: 348 LVVFATPSFRSIVSKQVGPNEQGKAQGCISGIS-SFANIVSPLIFSPLTALFLSKGAPFN 406
            V F        ++ Q                    A I   ++   +       G    
Sbjct: 325 EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---GFQGA 381

Query: 407 FPGFSIMCIGLASVRAFT 424
           +    ++ +G   +  FT
Sbjct: 382 YLVLGLVALGFTLISVFT 399

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 31/144 (21%)

Query: 8   KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGL--DECSLAIYLSGFQQAIIGLGTL 65
           K L    +T         +     T +++      L  DE   ++ L         L   
Sbjct: 267 KIL----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDL--- 318

Query: 66  VMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSI 125
              P          R+ + T P  LSII    +    +    + +     LT ++ E S+
Sbjct: 319 ---P----------REVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNCDKLTTII-ESSL 363

Query: 126 NCLALAYVADNISERQRASAFGIL 149
           N L      +    R+      + 
Sbjct: 364 NVL------EPAEYRKMFDRLSVF 381

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 51/397 (12%), Positives = 105/397 (26%), Gaps = 44/397 (11%)

Query: 42  GLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL-SIIPLAILAY 100
           G     L   LSG       +       ++G++SD+   +  L   L L + + L +   
Sbjct: 58  GFSRGDLGFALSGI-----SIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFV 112

Query: 101 RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGIL-----LGVLSA 155
             + S     + L  L     +G         +    S+++R     +      +G    
Sbjct: 113 PWATSSIAVMFVLLFLCGWF-QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIP 171

Query: 156 SFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGV 215
             +     A F    +A       ++L A +    ++D   +     +         +  
Sbjct: 172 PLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYN 231

Query: 216 NQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAV--VAFFSGLSEGGMQASFLY-- 271
            + E     K    + +   + L       + ++   V  + +             L   
Sbjct: 232 EKAEQELTAKQIFMQYVLPNKLLWY-----IAIANVFVYLLRYG-----------ILDWS 275

Query: 272 --FLKAQFHFNKNQFADLMLIAGLAGTISQLL-------FMPLLAPILGEAKLLSLGLFA 322
             +LK   HF  ++ +    +   AG    LL                G   +  + +  
Sbjct: 276 PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 335

Query: 323 ACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISS- 381
               M          +      F +              +       G A G        
Sbjct: 336 IVYWMNPAGNPTVDMICMIVIGFLIYGPVM--LIGLHALELAPKKAAGTAAGFTGLFGYL 393

Query: 382 FANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLA 418
             ++ +  I       F   G      G SI+ + L 
Sbjct: 394 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 430

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	438
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	100.0
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.59
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.54
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.54
2xut_A	524	Proton/peptide symporter family protein; transport	99.51
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.49
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.4
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.19

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=2.2e-39  Score=309.17  Aligned_cols=388  Identities=12%  Similarity=0.068  Sum_probs=304.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHH
Q 013707            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (438)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (438)
                      +.+..+++..+...++.....+.+|.+.+        ++ .+..+.|++.+++.++..++++++|+++||+|||+++..+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~   98 (451)
T 1pw4_A           28 QIFLGIFFGYAAYYLVRKNFALAMPYLVE--------QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG   98 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTTS--------ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence            34555666777778888888888887743        45 6667789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh----cccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhh
Q 013707           88 LTLSIIPLAILAY----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (438)
Q Consensus        88 ~~~~~~~~~~~~~----~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l  163 (438)
                      .++.+++.+++++    +++   ++.++++|+++|+ +.+...+...+++.|++|+++|++++++.+...++|.++||.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  174 (451)
T 1pw4_A           99 LILAAAVMLFMGFVPWATSS---IAVMFVLLFLCGW-FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL  174 (451)
T ss_dssp             HHHHHHHHHHHHHCHHHHSS---SSHHHHHHHHHHH-HHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccc---HHHHHHHHHHHHH-HhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999    888   8999999999999 8898999999999999999999999999999999999999999


Q ss_pred             hHH----hh-HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHH
Q 013707          164 ARF----LS-TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL  238 (438)
Q Consensus       164 ~~~----~~-w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (438)
                      ++.    .+ ||++|++.+++.++..++.++.+||++++.+.+++.+...+.        +++.+   .+.++..+.++.
T Consensus       175 ~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~  243 (451)
T 1pw4_A          175 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDY--------PDDYN---EKAEQELTAKQI  243 (451)
T ss_dssp             HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC------------------------CCTHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccc--------cccch---hhhhcccccccc
Confidence            876    36 999999999888777777778888877654332111000000        00000   000011122222


Q ss_pred             -HHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--chhhH
Q 013707          239 -ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEAKL  315 (438)
Q Consensus       239 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~  315 (438)
                       .+...++|.++...+..++..........+.|.|+++.+|+++.+.+.+.+...++.+++. ++.+++.||+  ++|+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~  322 (451)
T 1pw4_A          244 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGA  322 (451)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHH
T ss_pred             hHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchh
Confidence             3446678888888888888888888999999999999889999999999999999999998 8889999999  99988


Q ss_pred             HHHHHHHHH-HHHHHhHhcc--cchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhh-hhhhhhHh
Q 013707          316 LSLGLFAAC-INMFICSISW--SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSF-ANIVSPLI  390 (438)
Q Consensus       316 ~~~~~~~~~-~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~g~~~  390 (438)
                      +..+..+.. ++++++.+.+  +.+.... ..+.+++.+...+...++..|.+|+++||++.|+.+...++ |..++|.+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~  402 (451)
T 1pw4_A          323 TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI  402 (451)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            887777666 6777666654  3333333 56677778888888899999999999999999999999999 99999999


Q ss_pred             HHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 013707          391 FSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELL  428 (438)
Q Consensus       391 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (438)
                      .|.+.+..        .....+.+.+++.+++.+....
T Consensus       403 ~g~l~~~~--------g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          403 VGYTVDFF--------GWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHSS--------CSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhc--------CcHHHHHHHHHHHHHHHHHHHH
Confidence            99999863        2233444455555555444443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=4.6e-38  Score=298.85  Aligned_cols=348  Identities=14%  Similarity=0.095  Sum_probs=290.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHH
Q 013707            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (438)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (438)
                      .+..+.+..+...++.+...|.+|.+.+        +++.+..+.|++.+.+.++..++++++|+++||+|||++++.+.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~   98 (438)
T 3o7q_A           27 PFALLCSLFFLWAVANNLNDILLPQFQQ--------AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL   98 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHH
Confidence            4455566677777888888999998865        45667788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH---HhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhH
Q 013707           89 TLSIIPLAIL---AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (438)
Q Consensus        89 ~~~~~~~~~~---~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~  165 (438)
                      ++.+++.+++   .++++   ++.+++.|++.|+ +.+...+...+++.|++|+|+|++++++.+...++|.++||.+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  174 (438)
T 3o7q_A           99 FLYALGAALFWPAAEIMN---YTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_dssp             HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcccccc---HHHHHHHHHHHHh-hHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999   88889   9999999999999 889999999999999999999999999999999999999999988


Q ss_pred             Hhh------------------------------HHHHHHHHHHHHHHHHHHHHH-hcccCCCCCCCCCCCcccchhcccc
Q 013707          166 FLS------------------------------TTSAFQAATIVSMLAAAYMRV-FLKDDVPNDDDDDLTRPIITEETEG  214 (438)
Q Consensus       166 ~~~------------------------------w~~~f~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  214 (438)
                      .+.                              ||+.|++.+.+.++..+...+ ..||++++++++             
T Consensus       175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-------------  241 (438)
T 3o7q_A          175 SLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD-------------  241 (438)
T ss_dssp             HHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC-------------
T ss_pred             HHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc-------------
Confidence            753                              999998887776555444332 223332211110             


Q ss_pred             ccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHH-HHhHcCCChhHHHHHHHHHHH
Q 013707          215 VNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYF-LKAQFHFNKNQFADLMLIAGL  293 (438)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~  293 (438)
                                     ++..+.++..+.+.++|.++...+..++..........+.|.| +++.+|+++.+.+...+...+
T Consensus       242 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  306 (438)
T 3o7q_A          242 ---------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMV  306 (438)
T ss_dssp             ---------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred             ---------------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence                           0011223334446678888888888888888888889999999 888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhhhhhHHHHHHHHhhcCCCCcchhHH
Q 013707          294 AGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQ  373 (438)
Q Consensus       294 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  373 (438)
                      +.+++. ++.+++.||+++|+.+..+..+..++.++..+.++.+..+...+.+++.+...|...++..|.+|++ ++++.
T Consensus       307 ~~~~~~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~  384 (438)
T 3o7q_A          307 CFFIGR-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGS  384 (438)
T ss_dssp             HHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHH
T ss_pred             HHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchh
Confidence            999988 8889999999999999999999999888888877766655567788888889999999999999865 88888


Q ss_pred             HHHhhHhhhhhhhhhHhHHHHHHHHh
Q 013707          374 GCISGISSFANIVSPLIFSPLTALFL  399 (438)
Q Consensus       374 g~~~~~~~~g~~~g~~~~g~l~~~~~  399 (438)
                      +... ...++..++|.+.|.+.|..+
T Consensus       385 ~~~~-~~~~g~~~~~~~~g~l~~~~g  409 (438)
T 3o7q_A          385 SFIV-MTIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_dssp             HHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred             hHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            8777 778999999999999999864

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=6.3e-36  Score=288.37  Aligned_cols=407  Identities=14%  Similarity=0.101  Sum_probs=275.4

Q ss_pred             HHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHH
Q 013707           15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIP   94 (438)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~   94 (438)
                      ++.++..++.+++.+.+|.+.+++..+...+.+.+..+.|++.+++.+|..++++++|+++||+|||+++.++.+++.++
T Consensus        19 lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~   98 (491)
T 4gc0_A           19 LGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS   98 (491)
T ss_dssp             HHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            34456667778888888888776543333444666778899999999999999999999999999999999999999999


Q ss_pred             HHHHHh------------------cccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhh
Q 013707           95 LAILAY------------------RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS  156 (438)
Q Consensus        95 ~~~~~~------------------~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  156 (438)
                      .+++++                  ++|   ++.++++|+++|+ +.|...+....+++|+.|+++|++..+..+.+...|
T Consensus        99 ~i~~a~~~~~~~~~~~~~~~~~~~a~~---~~~l~~~R~l~G~-g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g  174 (491)
T 4gc0_A           99 GVGSAWPELGFTSINPDNTVPVYLAGY---VPEFVIYRIIGGI-GVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFG  174 (491)
T ss_dssp             HHHHHCTTTTTSCSSSSSSCCGGGGGC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhcchhHHHHHHhhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhh
Confidence            999884                  667   8999999999999 899999999999999999999999999999999999


Q ss_pred             hhhhHhhhHHh------------hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccc---hhccccccCCCCC
Q 013707          157 FVCGTLAARFL------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPII---TEETEGVNQNESN  221 (438)
Q Consensus       157 ~~~g~~l~~~~------------~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  221 (438)
                      .++++.++...            .||..+.+..+..++. +...+.+||+|+....+++.++..   ++...+...+++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~  253 (491)
T 4gc0_A          175 QLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV  253 (491)
T ss_dssp             HHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH
Confidence            99888776542            5788887777665444 455678999987433332222222   1111111000000


Q ss_pred             CCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHh-hhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHH
Q 013707          222 SPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGL-SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQL  300 (438)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  300 (438)
                      .+.++...+.+ .... ....++.+..........+..+ .......+.|.+. +..+.+...........++...++. 
T Consensus       254 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-  329 (491)
T 4gc0_A          254 QEIKHSLDHGR-KTGG-RLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVF-KTLGASTDIALLQTIIVGVINLTFT-  329 (491)
T ss_dssp             HHHHHHHHHHH-HHTT-HHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhhh-hhhh-HHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHH-HhcCCCccchhhHHHHHHHHHHHHH-
Confidence            00000000000 0000 1112233333333333333333 3334444444444 4468887777777777788888877 


Q ss_pred             HHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcc---c-chHHHH-HHHHHh-hhhhhHHHHHHHHhhcCCCCcchhHHH
Q 013707          301 LFMPLLAPILGEAKLLSLGLFAACINMFICSISW---S-AWVPYA-TTAFSV-LVVFATPSFRSIVSKQVGPNEQGKAQG  374 (438)
Q Consensus       301 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~g  374 (438)
                      ++.+++.||+|||+.+..+.....++++.+....   . .+.... ..+... ......|..+.+.+|.+|++.|+++.|
T Consensus       330 ~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g  409 (491)
T 4gc0_A          330 VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALA  409 (491)
T ss_dssp             HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHH
T ss_pred             HHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHH
Confidence            8888999999999999988888887776665422   1 222222 222222 233345778889999999999999999


Q ss_pred             HHhhHhhhhhhhhhHhHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 013707          375 CISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLLSFY  432 (438)
Q Consensus       375 ~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (438)
                      +.+..+++++.+++.+.+.+.+.....  .....+..+.+.+++++++.++.++..|+
T Consensus       410 ~~~~~~~~~~~i~~~~~p~l~~~~~~~--~~~~~~~~~~i~~~~~~~~~i~~~~~~PE  465 (491)
T 4gc0_A          410 IAVAAQWLANYFVSWTFPMMDKNSWLV--AHFHNGFSYWIYGCMGVLAALFMWKFVPE  465 (491)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHCHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence            999999999999999888776542110  00123445566666677776666554443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=2.2e-34  Score=277.58  Aligned_cols=381  Identities=13%  Similarity=0.015  Sum_probs=275.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccc-cCcchHhH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLT   85 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grk~~l~   85 (438)
                      +|.++.++...+...++.....+.++.|..+..  ..+|++.+..+.|++.+.+.++..+++++.|+++|| +|||+++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~   89 (491)
T 4aps_A           12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLI--STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF   89 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence            346677777788888888888788888876531  123578888999999999999999999999999999 89999999


Q ss_pred             HHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccc--hhHHHHHHHHHHHhhhhhhHhh
Q 013707           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ--RASAFGILLGVLSASFVCGTLA  163 (438)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~l  163 (438)
                      .+.++.+++.++++++++   ++.+++.|+++|+ +.+...+...++++|++|+++  |+.+++..+...++|..+||.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  165 (491)
T 4aps_A           90 WGGVLIMLGHIVLALPFG---ASALFGSIILIII-GTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI  165 (491)
T ss_dssp             HHHHHHHHHHHHHHSCCS---TTHHHHHHHHHHH-HHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence            999999999999999999   8999999999999 889999999999999999988  7778888999999999999998


Q ss_pred             hHHh----hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccc---c----------------ccCCCC
Q 013707          164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETE---G----------------VNQNES  220 (438)
Q Consensus       164 ~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~  220 (438)
                      ++.+    +||+.|++.++..++..+...+..|+..++++++.+.+...+..++   .                ..++.+
T Consensus       166 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~  245 (491)
T 4aps_A          166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS  245 (491)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence            8874    8999999988776666555444444433322111111100000000   0                000000


Q ss_pred             CCCCCcc---------------ccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHH
Q 013707          221 NSPVKIP---------------VCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFA  285 (438)
Q Consensus       221 ~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  285 (438)
                      .+.....               ..+.. ...  .+..++....+...+..++....+......+|.|.++..+.+..+.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (491)
T 4aps_A          246 LPAYINLLTIVAIAIPVFYFAWMISSV-KVT--STEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS  322 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHC---------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG
T ss_pred             cccchhhhhHHHHHHHHHHHHHHhhcc-ccc--HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHH
Confidence            0000000               00000 000  00011122244455555666667777788899999988888866777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhHHH-----HHHHHHHHHHHHhHhcc---------cchHHHH-HHHHHhhhh
Q 013707          286 DLMLIAGLAGTISQLLFMPLLAPILGEAKLLS-----LGLFAACINMFICSISW---------SAWVPYA-TTAFSVLVV  350 (438)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~  350 (438)
                      .......+...++. .+.+++.||++||+...     .+..+.+++++++....         +.+.... ..+.+++.+
T Consensus       323 ~~~~~~~~~~~~~~-~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  401 (491)
T 4aps_A          323 WFQSLNPLFIMLYT-PFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEM  401 (491)
T ss_dssp             GGTTHHHHHHHHHH-HHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHH
T ss_pred             HHhccchHHHHHHH-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH
Confidence            88888888888887 77789999999876544     77777777777666532         3333333 567788888


Q ss_pred             hhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          351 FATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      ...+..++++.|.+|+++||++.|+.+....+|..++|.+.+.+.+.
T Consensus       402 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~  448 (491)
T 4aps_A          402 LISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK  448 (491)
T ss_dssp             TTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred             HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            88899999999999999999999999999999999999998887653

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=6.6e-36  Score=278.03  Aligned_cols=340  Identities=13%  Similarity=0.095  Sum_probs=277.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHH
Q 013707           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (438)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~   90 (438)
                      ..++...++..++.+...|.+|.+.+        +++.+..+.|++.+.+.++..+++++.|+++||+|||+++..+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   74 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMAR--------DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSI   74 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT--------TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            34567778888899999999998854        5677778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh---
Q 013707           91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---  167 (438)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~---  167 (438)
                      .+++.++..++++   ++.+++.|+++|+ +.+...+...+++.|+.|+|+|+++++..+....+|..+||.+++.+   
T Consensus        75 ~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  150 (375)
T 2gfp_A           75 FMLATLVAVTTSS---LTVLIAASAMQGM-GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM  150 (375)
T ss_dssp             HHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred             HHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            9999999999998   9999999999999 88989999999999999999999999999999999999999998874   


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccc
Q 013707          168 -STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSV  246 (438)
Q Consensus       168 -~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (438)
                       +||+.|++.+++.++..+...+.+||++++++++                           ++..++.++    ..++|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~----~~~~~  199 (375)
T 2gfp_A          151 WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR---------------------------TRLLTSYKT----LFGNS  199 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC---------------------------CCTTTCSTH----HHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc---------------------------ccHHHHHHH----HhcCc
Confidence             8999999988887666554556677765432221                           001112233    44567


Q ss_pred             hhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH-HHH
Q 013707          247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA-ACI  325 (438)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~  325 (438)
                      .++...+..++..........+.|.|+++.+|.++.+.+.+.....++.+++. ++.+++.||.+++  ...+... ...
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~r~~~~--~~~~~~~~~~~  276 (375)
T 2gfp_A          200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGA-WFAGRPNKRFSTL--MWQSVICCLLA  276 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHH-HHHHTTTTHHHHH--HHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            78888888888888888888999999998889999999999999999999988 8888999998872  2233332 222


Q ss_pred             HHHHhHhc----ccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          326 NMFICSIS----WSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       326 ~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      +.......    ++.+.... ..+.+++.+...+...++..|..| ++||++.|+.+...++|..++|.+.|.+.+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  352 (375)
T 2gfp_A          277 GLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT  352 (375)
T ss_dssp             SSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred             HHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            32222211    23343333 567788888889999999999998 8999999999999999999999999999876

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=100.00  E-value=3.3e-32  Score=256.34  Aligned_cols=380  Identities=15%  Similarity=0.106  Sum_probs=250.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHH
Q 013707            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (438)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (438)
                      +|.++.+....++..++.+...|.+|.+.++       +.+.+..+.|++.+.+.++..++++++|+++||+|||+++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~   78 (417)
T 2cfq_A            6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHD-------INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW   78 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHT-------TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            3456666666777778888889999999764       345566778999999999999999999999999999999998


Q ss_pred             HHHHHHHHHH---HHHhcccchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCc--cchhHHHHHHHHHHHhhhhhhH
Q 013707           87 PLTLSIIPLA---ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE--RQRASAFGILLGVLSASFVCGT  161 (438)
Q Consensus        87 ~~~~~~~~~~---~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~  161 (438)
                      +..+.++...   ...+++..  ...+...+.+.|+ ..+...+.....+.++.++  ++|+...+..+....+|..++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~  155 (417)
T 2cfq_A           79 IITGMLVMFAPFFIFIFGPLL--QYNILVGSIVGGI-YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGA  155 (417)
T ss_dssp             HHHHTTSCHHHHHHHTHHHHH--HTTCCHHHHGGGS-STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Confidence            8877654321   11222210  0112345666665 4454444444444444443  4566677888777888999999


Q ss_pred             hhhHHh---hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHH
Q 013707          162 LAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL  238 (438)
Q Consensus       162 ~l~~~~---~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (438)
                      .+++++   +||..|++.++..++..+. .+..||+++++.+++              +++++    +   +++.+.++.
T Consensus       156 ~l~~~l~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------~~~~~----~---~~~~~~~~~  213 (417)
T 2cfq_A          156 SIVGIMFTINNQFVFWLGSGCALILAVL-LFFAKTDAPSSATVA--------------NAVGA----N---HSAFSLKLA  213 (417)
T ss_dssp             HHHHHHHHHCSHHHHTTTTTTTTTHHHH-SCSSCCCCSCSSCSS--------------SSSSS----C---CCCCCHHHH
T ss_pred             HHHHHHHHhchhHHHHHHHHHHHHHHHH-HHHcCcccccccccc--------------ccccc----c---cccccHHHH
Confidence            888774   6899998876664433333 333333321111100              00000    0   001122332


Q ss_pred             HHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 013707          239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHF---NKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (438)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  315 (438)
                      . ...++|.++...+..+.....+.....++|.|+++.++.   +....+...+...++.+++. +..++++||+|+|+.
T Consensus       214 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~  291 (417)
T 2cfq_A          214 L-ELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM-FFAPLIINRIGGKNA  291 (417)
T ss_dssp             H-HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHH
T ss_pred             H-HHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcHHHH
Confidence            2 244566666655554544445555556688888775542   34455777777777778877 888999999999999


Q ss_pred             HHHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHH-HhhHhhhhhhhhhHhHHH
Q 013707          316 LSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGC-ISGISSFANIVSPLIFSP  393 (438)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~~g~~~g~~~~g~  393 (438)
                      +..+..+.+++.+...+.++.+.... ..+.+++.+...+....+..|..|++.||++.+. ++..+.+|+.++|.+.|.
T Consensus       292 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~  371 (417)
T 2cfq_A          292 LLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGN  371 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHH
Confidence            98888888887777766665554443 3445566666667778899999999999999999 488889999999999999


Q ss_pred             HHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 013707          394 LTALFLSKGAPFNFPGFSIMCIGLASVRAFTYELL  428 (438)
Q Consensus       394 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (438)
                      +.+..+        ....+...+++.+++.+..+.
T Consensus       372 l~~~~g--------~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          372 MYESIG--------FQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHSH--------HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhcC--------cHHHHHHHHHHHHHHHHHHHh
Confidence            998632        223455555555555555443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=2.7e-29  Score=243.95  Aligned_cols=385  Identities=11%  Similarity=0.040  Sum_probs=242.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhccccccc-CcchHh
Q 013707            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAML   84 (438)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grk~~l   84 (438)
                      ++|.++.+.+..++..++.....+.++.+..+..+++ .+.+.+..+.|++.+.+.++..+++++.|+++||+ |||+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~   88 (524)
T 2xut_A           10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLS-IPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI   88 (524)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC-CSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            3556677788888888888888888888876532211 12226778889999999999999999999999999 999999


Q ss_pred             HHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHH---HHHHHHhhhhhh
Q 013707           85 TLPLTLSIIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI---LLGVLSASFVCG  160 (438)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g  160 (438)
                      ..+.++.+++.++.++++ +   ++.+++.|++.|+ +.+...+...+++.|++|+++|+++.+.   .+...++|..+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g  164 (524)
T 2xut_A           89 LWLSLIYCVGHAFLAIFEHS---VQGFYTGLFLIAL-GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFA  164 (524)
T ss_dssp             HHHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHH-HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHH-hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998 8   8999999999999 8888999999999999999999876666   888899999999


Q ss_pred             HhhhHHh----hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCC---------------
Q 013707          161 TLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESN---------------  221 (438)
Q Consensus       161 ~~l~~~~----~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  221 (438)
                      |.+++.+    +||+.|++.+++.++..+...+..|+.+++++++++..+..+.......++..+               
T Consensus       165 ~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (524)
T 2xut_A          165 SLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVS  244 (524)
T ss_dssp             HHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhh
Confidence            9888764    899999998887665544433322322211111100000000000000000000               


Q ss_pred             -------CCCC------------ccccccCCchhHHHH--------hhcccchhHHH---HHHHHHHHhhhchhhHHHHH
Q 013707          222 -------SPVK------------IPVCKKIPSIRDLIC--------LLRSSVTLSQA---AVVAFFSGLSEGGMQASFLY  271 (438)
Q Consensus       222 -------~~~~------------~~~~~~~~~~~~~~~--------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  271 (438)
                             ....            ..+.+.+.++++..+        ...+++.....   .....+...........++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (524)
T 2xut_A          245 AAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWIL  324 (524)
T ss_dssp             HHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHH
T ss_pred             hhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHH
Confidence                   0000            000000001100000        01112222111   11112222223333344455


Q ss_pred             HHHhHcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhch----hhHHHHHHHHHHHHHHHhHhcc--------
Q 013707          272 FLKAQFHFNK-NQFADLMLIAGLAGTISQLLFMPLLA----PILGE----AKLLSLGLFAACINMFICSISW--------  334 (438)
Q Consensus       272 ~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~--------  334 (438)
                      +..+ .+.+. ...+.+.....+...+.. .+.+++.    ||.++    ++.+..+..+.+++++.+.+..        
T Consensus       325 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  402 (524)
T 2xut_A          325 QAND-MVKPQWFEPAMMQALNPLLVMLLI-PFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSA  402 (524)
T ss_dssp             HHHH-SCCCSSSCHHHHHTTSGGGHHHHG-GGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCC
T ss_pred             hHHh-cCCCeeecHHHHHHHHHHHHHHhH-HHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            5443 33322 134555555445555544 3333432    33332    3466677778888877776632        


Q ss_pred             -cchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          335 -SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       335 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                       +.+.... ..+.+++.+...+..+++..|..|+++||+++|+.+...++|+.++|.+.|.+.+.
T Consensus       403 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~  467 (524)
T 2xut_A          403 LSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP  467 (524)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence             3333333 57778888899999999999999999999999999999999999999999998763

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.59  E-value=1.6e-13  Score=131.82  Aligned_cols=176  Identities=13%  Similarity=0.145  Sum_probs=147.2

Q ss_pred             cchhHHHHHHHHHHHhhhchhhHHHHHHHHhH-----cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhhHHHH
Q 013707          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ-----FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSL  318 (438)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~  318 (438)
                      ++.++......++..+.++....+++.|+++.     +|.++.+.+++.+...++..++. +..|+++|| +|||+.+..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~~g~r~~~~~   90 (491)
T 4aps_A           12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSG-TIGGFVADRIIGARPAVFW   90 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSCHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchHHHHH
Confidence            34566777777888888888889999999998     99999999999999999999999 888999999 899999999


Q ss_pred             HHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCc--chhHHHHHhhHhhhhhhhhhHhHHHHH
Q 013707          319 GLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNE--QGKAQGCISGISSFANIVSPLIFSPLT  395 (438)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~~g~~~~g~l~  395 (438)
                      +..+..++.++..+.++.+.+++ .++.|++.+...+...+++.|.+|+++  |+++.+..+....+|..++|.+.+.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  170 (491)
T 4aps_A           91 GGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ  170 (491)
T ss_dssp             HHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888877766 678899999999999999999999988  778888899999999999999999998


Q ss_pred             HHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 013707          396 ALFLSKGAPFNFPGFSIMCIGLASVRAFTYELLL  429 (438)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (438)
                      +..        .....+.+.++..+++.+.....
T Consensus       171 ~~~--------g~~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          171 EAA--------GYHVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHS--------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhh--------hHHHHHHHHHHHHHHHHHHHHHh
Confidence            862        22234444444444444444433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.54  E-value=2.1e-13  Score=129.30  Aligned_cols=151  Identities=14%  Similarity=0.081  Sum_probs=131.6

Q ss_pred             cchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 013707          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (438)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  324 (438)
                      ++.+....+..+............+|.+.++ + .++.+.+++.+...++..++. +..|+++||+|||+.+..+.++.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSK-FIMGSVSDRSNPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHH-HhHHHHHHhcCchHHHHHHHHHHH
Confidence            3445555666666666666777777877766 6 999999999999999999998 888999999999999999999999


Q ss_pred             HHHHHhHh----cccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHH
Q 013707          325 INMFICSI----SWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  398 (438)
Q Consensus       325 ~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  398 (438)
                      ++.++..+    .++.+.+++ .++.|++.+...+...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..
T Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  182 (451)
T 1pw4_A          104 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF  182 (451)
T ss_dssp             HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999988    778777666 678899999999999999999999999999999999999999999999999988763

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.54  E-value=3.3e-13  Score=127.47  Aligned_cols=146  Identities=10%  Similarity=-0.011  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 013707          249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMF  328 (438)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  328 (438)
                      ....+..+...+.........|.+. +.+|.++.+.+++.+...++..++. +..|+++||+|||+.+..+..+.+++.+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~-~~~G~l~dr~g~r~~l~~~~~~~~~~~~  106 (438)
T 3o7q_A           29 ALLCSLFFLWAVANNLNDILLPQFQ-QAFTLTNFQAGLIQSAFYFGYFIIP-IPAGILMKKLSYKAGIITGLFLYALGAA  106 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-HHSCCCSHHHHHHHHHHHHHHHTTH-HHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            3344445555555556666667655 4589999999999999999999998 8889999999999999999999999998


Q ss_pred             Hh---HhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHH
Q 013707          329 IC---SISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  396 (438)
Q Consensus       329 ~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  396 (438)
                      +.   .+.++.+.+++ .++.|++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+
T Consensus       107 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  178 (438)
T 3o7q_A          107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL  178 (438)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88   77778777766 6888999999999999999999999999999999999999999999999999883

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.51  E-value=4.3e-13  Score=129.82  Aligned_cols=152  Identities=14%  Similarity=0.047  Sum_probs=133.4

Q ss_pred             cchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcC------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chhhHHH
Q 013707          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH------FNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-GEAKLLS  317 (438)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~  317 (438)
                      ++.++...+..++..+..+....+++.|+++.+|      +++.+.+++.+...++..++. +..|+++||+ |||+.+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~~g~r~~~~   89 (524)
T 2xut_A           11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP-LLGGWIADRFFGKYNTIL   89 (524)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTH-HHHHHHHTTSSCSHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcchHHHH
Confidence            4556667778888888888889999999998889      999999999999999999988 8889999999 9999999


Q ss_pred             HHHHHHHHHHHHhHhcc-cchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHH---HhhHhhhhhhhhhHhHH
Q 013707          318 LGLFAACINMFICSISW-SAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGC---ISGISSFANIVSPLIFS  392 (438)
Q Consensus       318 ~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~~g~~~g~~~~g  392 (438)
                      .+.++.+++.++..+.+ +.+.+++ .++.|++.+...+...+++.|.+|+++|++..+.   .+...++|..++|.+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~  169 (524)
T 2xut_A           90 WLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP  169 (524)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988887 7766665 5778999999999999999999999999876666   88999999999999999


Q ss_pred             HHHHH
Q 013707          393 PLTAL  397 (438)
Q Consensus       393 ~l~~~  397 (438)
                      .+.+.
T Consensus       170 ~l~~~  174 (524)
T 2xut_A          170 LLLKN  174 (524)
T ss_dssp             HHHHT
T ss_pred             HHhcc
Confidence            98874

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.49  E-value=5e-13  Score=125.40  Aligned_cols=160  Identities=13%  Similarity=0.083  Sum_probs=124.1

Q ss_pred             hhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHH
Q 013707           29 PAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFY  108 (438)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~  108 (438)
                      ..+|.+..+..    ++.+.+....|+..+...++..++.++.|+++||+|||+++..+..+.+++.+..++.++   .+
T Consensus       241 ~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~---~~  313 (417)
T 2cfq_A          241 QQFANFFTSFF----ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS---AL  313 (417)
T ss_dssp             HHHHHHHHHTS----SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCS---HH
T ss_pred             HHHHHHHHHHH----hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhcc---HH
Confidence            34676665432    112334456688888888899999999999999999999999888888888777777777   67


Q ss_pred             HHHHHHHhhhhcchhhHhhhhhHhhhccCCccchhHHHHH-HHHHHHhhhhhhHhhhHHh----hHHHHHHHHHHHHHHH
Q 013707          109 AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI-LLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLA  183 (438)
Q Consensus       109 ~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~l~~~~----~w~~~f~~~~~~~~i~  183 (438)
                      .+++..++.++ +.+...+....+++|.+|++.|+++.+. .+....+|..+||.+++.+    +++..|.+.+++.++.
T Consensus       314 ~~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~  392 (417)
T 2cfq_A          314 EVVILKTLHMF-EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGF  392 (417)
T ss_dssp             HHHHHTTHHHH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            77778788887 6666667778899999999999999998 4778888989998888763    6788888888877776


Q ss_pred             HHHHHHhcccCCC
Q 013707          184 AAYMRVFLKDDVP  196 (438)
Q Consensus       184 ~~~~~~~~~~~~~  196 (438)
                      .+..+...||+++
T Consensus       393 ~~~~~~~~~~~~~  405 (417)
T 2cfq_A          393 TLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHTTSSCCSCT
T ss_pred             HHHHHhhhcCCCc
Confidence            6665555666444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.40  E-value=5.7e-13  Score=123.19  Aligned_cols=145  Identities=12%  Similarity=0.091  Sum_probs=127.0

Q ss_pred             HHHHHHHHHhhhchhhHHHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHh
Q 013707          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFIC  330 (438)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  330 (438)
                      ..+..++...........+|.+.++ +|.++.+.+++.+...++..++. +..|+++||+|||+.+..+..+..++.+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            5 LVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQ-LFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHH-TTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            4455556666666667777776655 89999999999999999999998 888999999999999999999999999998


Q ss_pred             HhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHH
Q 013707          331 SISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  397 (438)
Q Consensus       331 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  397 (438)
                      .+.++.+.... .++.|++.+...+...+++.|..|+++|+++.+..+....+|..++|.+.+.+.+.
T Consensus        83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  150 (375)
T 2gfp_A           83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM  150 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred             HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            88887776666 57789999999999999999999999999999999999999999999999998875

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.19  E-value=3.6e-10  Score=108.29  Aligned_cols=144  Identities=15%  Similarity=0.106  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcc--cchhHH-HHHHHHHhhhhcchhhHhhhh
Q 013707           53 SGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR--SISFFY-AYYALRTLTAMVCEGSINCLA  129 (438)
Q Consensus        53 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~--~~~~~~-~l~~~r~l~G~~~~~~~~~~~  129 (438)
                      .........+...++.++.+.+.||+|||+.++.+.....++.+..+...  ...... .....-+..+.  .....|..
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  391 (491)
T 4gc0_A          314 ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAF--AMSWGPVC  391 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HTTTTHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH--HhHHHHHH
Confidence            34455566778888899999999999999999998888777766554431  111122 22222222222  23344677


Q ss_pred             hHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHH----------hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 013707          130 LAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPND  198 (438)
Q Consensus       130 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~----------~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~  198 (438)
                      ..+.+|.+|.+.|++++|+......++..+++.+...          .++...|++.+.++++..+..++++||++.+.
T Consensus       392 ~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t  470 (491)
T 4gc0_A          392 WVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT  470 (491)
T ss_dssp             HHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred             HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence            8899999999999999999999988888887665433          24456788888888888888889999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	438
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-06

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 55/422 (13%), Positives = 122/422 (28%), Gaps = 14/422 (3%)

Query: 4   EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLG 63
            +   T   L   +FL  F        +     +A+ P L E   +    GF  + I + 
Sbjct: 13  AEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIA 71

Query: 64  TLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG 123
                 ++G++SD+   +  L   L L+   +  + +    +   A   +        +G
Sbjct: 72  YGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQG 131

Query: 124 SINCLALAYVADNISERQRASAFGILLGVLS-ASFVCGTLAARFLSTTSAFQAATIVSML 182
                    +    S+++R     +     +    +   L    ++  + + AA  +   
Sbjct: 132 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF 191

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
            A  + +F    + +        PI   + +  +     +       +++ + +  +  +
Sbjct: 192 CAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAE------QELTAKQIFMQYV 245

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
             +  L   A+   F  L   G+      +LK   HF  ++ +    +   AG    LL 
Sbjct: 246 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLC 305

Query: 303 MPLL-----APILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSFR 357
             +                   +  A I  ++                  L+        
Sbjct: 306 GWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIG 365

Query: 358 SIVSKQVGPNEQGKAQGCISGISSF-ANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIG 416
               +       G A G          ++ +  I       F   G      G SI+ + 
Sbjct: 366 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 425

Query: 417 LA 418
           L 
Sbjct: 426 LL 427

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	438
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.98
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.45
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.42

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-36  Score=286.03  Aligned_cols=342  Identities=13%  Similarity=0.074  Sum_probs=260.9

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHhhhhcchh
Q 013707           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI-SFFYAYYALRTLTAMVCEG  123 (438)
Q Consensus        45 ~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~  123 (438)
                      |.+.+..+.|++.+++.++..++++++|+++||+|||+++..+.++.+++.++++++++. ..++.+++.|++.|+ +.+
T Consensus        53 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~  131 (447)
T d1pw4a_          53 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW-FQG  131 (447)
T ss_dssp             SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHH-HHH
T ss_pred             HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHH-hhh
Confidence            457778889999999999999999999999999999999999999999999988877421 117899999999999 888


Q ss_pred             hHhhhhhHhhhccCCccchhHHHHHHHHHHHhhhhhhHhhhHHh-----hHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 013707          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPND  198 (438)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~~-----~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~  198 (438)
                      ...+...+++.|++|+++|++++++.+.+..+|..++|.+++..     +||+.|++.+.+.++..++.++..+|+|++.
T Consensus       132 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (447)
T d1pw4a_         132 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC  211 (447)
T ss_dssp             HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred             hhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhc
Confidence            88899999999999999999999999999999999999877652     7999999998888877777777787776654


Q ss_pred             CCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHHHhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhHcC
Q 013707          199 DDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH  278 (438)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  278 (438)
                      ....+.+..          ++.++..++..+++....+...+...+++.++......++..........+.|.|+++.++
T Consensus       212 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (447)
T d1pw4a_         212 GLPPIEEYK----------NDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH  281 (447)
T ss_dssp             CCCSCTTTC----------CC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSC
T ss_pred             ccchhhhhh----------hhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccc
Confidence            432111000          0000000011111111223334456778888888888888888888899999999999899


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH---HHHHHHHhHhc--ccchHHHH-HHHHHhhhhhh
Q 013707          279 FNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA---ACINMFICSIS--WSAWVPYA-TTAFSVLVVFA  352 (438)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~  352 (438)
                      ++..+.+.......+..+++. ++.+++.||.++++........   ..++.......  .+.+.... .++.+++.+..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  360 (447)
T d1pw4a_         282 FALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGP  360 (447)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHH
T ss_pred             cccchhhhhhhcchhhhhhhh-hhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988 8889999999876543333222   22222222222  23333333 45667777788


Q ss_pred             HHHHHHHHhhcCCCCcchhHHHHHhhHhhh-hhhhhhHhHHHHHHHH
Q 013707          353 TPSFRSIVSKQVGPNEQGKAQGCISGISSF-ANIVSPLIFSPLTALF  398 (438)
Q Consensus       353 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~g~~~~g~l~~~~  398 (438)
                      .+....+..|.+|++.||++.|+.+...++ |..++|.+.|.+.|..
T Consensus       361 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~  407 (447)
T d1pw4a_         361 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF  407 (447)
T ss_dssp             HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888899999999999999999999988887 4566899999998863

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=3e-30  Score=239.91  Aligned_cols=382  Identities=14%  Similarity=0.052  Sum_probs=264.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhH
Q 013707            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (438)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~   85 (438)
                      |+|+++.+.+..++..++.+...|.+|.+.+|       +.+.+..+.|++.+++.++..++++++|+++||+|||++++
T Consensus         5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~-------~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~   77 (417)
T d1pv7a_           5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHD-------INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL   77 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            36788888888999999999999999998764       45677889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccchh-HHHHHHHHHhhhhcchhhHhhhhhHhhhccCCc--cchhHHHHHHHHHHHhhhhhhHh
Q 013707           86 LPLTLSIIPLAILAYRRSISF-FYAYYALRTLTAMVCEGSINCLALAYVADNISE--RQRASAFGILLGVLSASFVCGTL  162 (438)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~  162 (438)
                      ++..+..++..+..+.++... ....+..+.+.+. ..+...........+..++  +++.+..+........+..++|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (417)
T d1pv7a_          78 WIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI-YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGAS  156 (417)
T ss_dssp             HHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTT-TGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh-cccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccc
Confidence            999999888888887765211 2233455555555 4444433444444333332  34556677777888888888888


Q ss_pred             hhHHh---hHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCcccchhccccccCCCCCCCCCccccccCCchhHHH
Q 013707          163 AARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (438)
Q Consensus       163 l~~~~---~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (438)
                      +++.+   +|+..+........+..+...+..+|++++.+++++.                      ...++....++ .
T Consensus       157 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~-~  213 (417)
T d1pv7a_         157 IVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV----------------------GANHSAFSLKL-A  213 (417)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH----------------------HSCCCCCCHHH-H
T ss_pred             cccccccccccccccchhhHHHHHHHHHHHHhcccccchhhhhhh----------------------hhhcccccccc-c
Confidence            88774   5666666666666666666666777766554443100                      00001111111 1


Q ss_pred             HhhcccchhHHHHHHHHHHHhhhchhhHHHHHHHHhH---cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 013707          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ---FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (438)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  316 (438)
                      +...+++..+....................+.+....   .+.+....+.......++..++. ...+++.||.++++.+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~r~~~~~~~  292 (417)
T d1pv7a_         214 LELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM-FFAPLIINRIGGKNAL  292 (417)
T ss_dssp             HHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHHCHHHHH
T ss_pred             ccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccch-hhhhhhhcccccccch
Confidence            1122333333333333333333333333333333221   23445555667777777777777 7888999999999999


Q ss_pred             HHHHHHHHHHHHHhHhcccchHHHH-HHHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHH-hhHhhhhhhhhhHhHHHH
Q 013707          317 SLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCI-SGISSFANIVSPLIFSPL  394 (438)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~~g~~~~g~l  394 (438)
                      ..+..+.+++.+.+.+.++.+..+. ..+.+++.+...+...++++|.+|+++|+++.|+. +....+|..++|.+.|++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l  372 (417)
T d1pv7a_         293 LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM  372 (417)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888877766 67788999999999999999999999999999985 456779999999999999


Q ss_pred             HHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 013707          395 TALFLSKGAPFNFPGFSIMCIGLASVRAFTYEL  427 (438)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (438)
                      .|..+        ....+.+.+++.++..++..
T Consensus       373 ~~~~g--------~~~~~~~~~~~~~~~~~~~~  397 (417)
T d1pv7a_         373 YESIG--------FQGAYLVLGLVALGFTLISV  397 (417)
T ss_dssp             HHHHC--------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHC--------HHHHHHHHHHHHHHHHHHHH
Confidence            99853        22334444555544444443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=2e-12  Score=119.99  Aligned_cols=130  Identities=15%  Similarity=0.110  Sum_probs=112.6

Q ss_pred             HHHHHHHhHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhHhcc----cchHHHH-H
Q 013707          268 SFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW----SAWVPYA-T  342 (438)
Q Consensus       268 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~  342 (438)
                      ...++++| +|+|+.+.|++.+...++..+++ +..|+++||+|||+.+..+.++.+++.++.++..    +.+..++ .
T Consensus        46 ~~~p~~~~-~g~s~~~~g~~~s~~~~~~~~~~-~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (447)
T d1pw4a_          46 LAMPYLVE-QGFSRGDLGFALSGISIAYGFSK-FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL  123 (447)
T ss_dssp             HHHHHTTS-STTCSSCHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHH
T ss_pred             HHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHH
Confidence            33345665 79999999999999999999998 8889999999999999999999998888877653    4444444 5


Q ss_pred             HHHHhhhhhhHHHHHHHHhhcCCCCcchhHHHHHhhHhhhhhhhhhHhHHHHHHHHh
Q 013707          343 TAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFL  399 (438)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  399 (438)
                      ++.+++.+...+...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+...
T Consensus       124 ~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  180 (447)
T d1pw4a_         124 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN  180 (447)
T ss_dssp             HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh
Confidence            778889999999999999999999999999999999999999999999988887643

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=4.8e-13  Score=122.44  Aligned_cols=151  Identities=13%  Similarity=0.080  Sum_probs=130.8

Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccCcchHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhhhcch
Q 013707           43 LDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE  122 (438)
Q Consensus        43 ~~~~~~s~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  122 (438)
                      ..+.+.+....+...+...++..++..+.+++.||+|||+.+..+..+.+++.+...+.++   .+.+++..++.|+ +.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~  326 (417)
T d1pv7a_         251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS---ALEVVILKTLHMF-EV  326 (417)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHH-HH
T ss_pred             ccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccc---cchhhHHHHHHHH-HH
Confidence            3455666778888999999999999999999999999999999999999999999999999   8888999999999 88


Q ss_pred             hhHhhhhhHhhhccCCccchhHHHHHH-HHHHHhhhhhhHhhhHH----hhHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 013707          123 GSINCLALAYVADNISERQRASAFGIL-LGVLSASFVCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (438)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~l~~~----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~  197 (438)
                      +...+...+++.|.+|+++|++..+.. +....+|..++|.++++    .|++..|++.+++.++..++..+.++++.+.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  406 (417)
T d1pv7a_         327 PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL  406 (417)
T ss_dssp             HHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred             HHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence            888999999999999999999999975 45677888888888776    4889999999888877777777777765443