Citrus Sinensis ID: 013709

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC
cccEEEEEEEEcccccEEEEEcccccccccHHHHHHHHHHHHcccccccEEEEccEEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHHHccccccHHHHcHHHHHHHHHHHHHHcccccccccHHHHHcccccccccccccccccccccccccccccccEEEEccccEEEccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEccccEEEEEEcccccccccccccccccccccEEEcccccccccccccccccccEEEEEcccccEEEEEEEEcccccccEEEEEEEEEEccEEEEEEEEEEEcccccEEEEEEEEEcccccccccEEEEEcEEEEEEEccccEEEEEEcccccccccEEEEEEEEEcccccccccccccEEEEEEEcEEEccccEEEEEEEEEcccccccccEEEEEEEEcEEEcc
cccEEEEEEEEcccccEEEEEcccccccHHHHHHHHHHHHHcHHcccccEEEEccEEEEEEEcccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccEcccccccccccccccccHHcccEcccccccEEcccEEEHEHHHHHEEEEcccccEEEEHEEEEEEEEEEEccccccEEccccEEEEEccccccccccccccEEEEEccEEEEEEEEcccccccEEEEEcccccEEEEEEEccccccccEEEEEEEEEccccEEEEEEEEEEEccccccccEEEEEEEccccccccEEEEEEEEEEEcccccEEEEEEEEcccccEEEEEEEEEcccccccccccccccEEEEEEEEEEEcccEEEEEEEEEcccccccccEEEEEEccccEEEEc
MPVAASAIYFLNLRGDVLInrlyrddvggnMVDAFRTHIMqtkelgtcpvrqiggcsffyMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSyfggafdedaIRNNFVLIYELLDEImdfgypqnlspeILKLYitqegvrspfsskptdrpvpnatlqvtgavgwrreglvykknEVFLDIVESVNLLMsskgsvlrcdVTGKILMKCFlsgmpdlklglndkiglekesqlksrptksgktielddvtfhqcvnltrfnsektvsfvppdgefELMKYRItegvnlpfrvlpTIKELGRTRMEVNVKIKSVFGAKMFALGVVikipvpkqtaktsfqvtsgrakyNASIDCLVWKIrkfpgqteptmSAEVELISTMAekkswtrppiqmefqvpmftasgLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC
MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHImqtkelgtcpVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPfsskptdrpvpnatlqvtgavgwrreglvYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLekesqlksrptksgktielddvtFHQCVnltrfnsektvsfvpPDGEFELMKYritegvnlpfrvlptikelgrtrmeVNVKIKSVFGAKMFALGVVIkipvpkqtaktsfqvtsgrakynASIDCLVWKIRKfpgqteptMSAEVELISTMAEkkswtrppIQMEFQVPMFTASGLRVRFLKVWeksgyntvewvryitkagsyeirc
MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRisnvyivivvssnanvacaFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC
****ASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEG****************ATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKI******************IELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPG**********ELIST*****SWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSY****
*PVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQ*********************************LVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIG******************ELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELI************PIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC
MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKE**********GKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC
*PVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPF**********NATL**TGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKE**********GKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query438 2.2.26 [Sep-21-2011]
P54672439 AP-2 complex subunit mu O yes no 0.981 0.979 0.520 1e-135
P84092435 AP-2 complex subunit mu O yes no 0.972 0.979 0.486 1e-124
P84091435 AP-2 complex subunit mu O yes no 0.972 0.979 0.486 1e-124
Q4R706435 AP-2 complex subunit mu O N/A no 0.972 0.979 0.486 1e-124
Q96CW1435 AP-2 complex subunit mu O yes no 0.972 0.979 0.486 1e-124
Q3ZC13435 AP-2 complex subunit mu O yes no 0.972 0.979 0.486 1e-124
Q6P856435 AP-2 complex subunit mu O yes no 0.972 0.979 0.484 1e-123
Q801Q8435 AP-2 complex subunit mu O N/A no 0.972 0.979 0.481 1e-123
Q5ZMP6433 AP-2 complex subunit mu O yes no 0.968 0.979 0.486 1e-123
Q5NVF7435 AP-2 complex subunit mu O yes no 0.972 0.979 0.481 1e-122
>sp|P54672|AP2M_DICDI AP-2 complex subunit mu OS=Dictyostelium discoideum GN=apm2 PE=2 SV=2 Back     alignment and function desciption
 Score =  481 bits (1238), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 228/438 (52%), Positives = 319/438 (72%), Gaps = 8/438 (1%)

Query: 6   SAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISN 65
           SA++ +N +G+VLI+R+YRDD+   + +AFR  ++ ++E  + PV+ IG  SF Y+++ N
Sbjct: 3   SALFLMNGKGEVLISRIYRDDISRGVANAFRLEVIGSQETRS-PVKLIGSTSFMYIKVGN 61

Query: 66  VYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYP 125
           +YIV V   N N    F+ + + V +FKSYF    DED+IRNNFVL+YELLDEI+DFGYP
Sbjct: 62  IYIVGVSRQNVNACMVFEVLHQLVDIFKSYFDN-LDEDSIRNNFVLVYELLDEILDFGYP 120

Query: 126 QNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIV 185
           QN S ++LKLYITQ   +     K     +   T+Q TG   WR   + YK+NE+++D+V
Sbjct: 121 QNCSTDVLKLYITQGQGKLKSLDKLKQDKISKITIQATGTTPWRTPDIKYKRNELYIDVV 180

Query: 186 ESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKE-SQLKSRPTKSG- 243
           ESVNLLMS++G++LR DV+G+++MKCFLSGMP+ K G+NDK+ +++E S       +SG 
Sbjct: 181 ESVNLLMSAEGNILRADVSGQVMMKCFLSGMPECKFGMNDKVIMDREKSTNGGSAARSGA 240

Query: 244 ---KTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKE 300
                IE+DD+TFHQCV L +F+S++TVSF+PPDGEFELM+YR TE +NLPF+V+P ++E
Sbjct: 241 RRANGIEIDDITFHQCVRLGKFDSDRTVSFIPPDGEFELMRYRTTEHINLPFKVIPIVRE 300

Query: 301 LGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKI 360
           +GRTR+E +V +KS F +KMF   V + IP PK TA     V +G+AKY    D ++W+I
Sbjct: 301 MGRTRLECSVTVKSNFSSKMFGANVKVIIPTPKNTAVCKIVVAAGKAKYMPEQDAIIWRI 360

Query: 361 RKFPGQTEPTMSAEVELISTMA-EKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGY 419
           R+FPG TE T+ AEVEL++++  +KK+W+RPPI MEFQV MFTASG  VRFLKV EKS Y
Sbjct: 361 RRFPGDTEFTLRAEVELMASVNLDKKAWSRPPISMEFQVTMFTASGFSVRFLKVVEKSNY 420

Query: 420 NTVEWVRYITKAGSYEIR 437
             ++WVRY+TKAG+Y+ R
Sbjct: 421 TPIKWVRYLTKAGTYQNR 438
Component of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. AP50 is a subunit of the plasma membrane adaptor.
Dictyostelium discoideum (taxid: 44689)
>sp|P84092|AP2M1_RAT AP-2 complex subunit mu OS=Rattus norvegicus GN=Ap2m1 PE=1 SV=1 Back     alignment and function description
>sp|P84091|AP2M1_MOUSE AP-2 complex subunit mu OS=Mus musculus GN=Ap2m1 PE=1 SV=1 Back     alignment and function description
>sp|Q4R706|AP2M1_MACFA AP-2 complex subunit mu OS=Macaca fascicularis GN=AP2M1 PE=2 SV=1 Back     alignment and function description
>sp|Q96CW1|AP2M1_HUMAN AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 PE=1 SV=2 Back     alignment and function description
>sp|Q3ZC13|AP2M1_BOVIN AP-2 complex subunit mu OS=Bos taurus GN=AP2M1 PE=1 SV=1 Back     alignment and function description
>sp|Q6P856|AP2M1_XENTR AP-2 complex subunit mu OS=Xenopus tropicalis GN=ap2m1 PE=2 SV=1 Back     alignment and function description
>sp|Q801Q8|AP2M1_XENLA AP-2 complex subunit mu OS=Xenopus laevis GN=ap2m1 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZMP6|AP2M1_CHICK AP-2 complex subunit mu OS=Gallus gallus GN=AP2M1 PE=2 SV=1 Back     alignment and function description
>sp|Q5NVF7|AP2M1_PONAB AP-2 complex subunit mu OS=Pongo abelii GN=AP2M1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query438
224126493438 predicted protein [Populus trichocarpa] 1.0 1.0 0.981 0.0
225427268438 PREDICTED: AP-2 complex subunit mu [Viti 1.0 1.0 0.981 0.0
449461513438 PREDICTED: AP-2 complex subunit mu-like 1.0 1.0 0.979 0.0
356495539 549 PREDICTED: AP-2 complex subunit mu-like 1.0 0.797 0.974 0.0
224138888438 predicted protein [Populus trichocarpa] 1.0 1.0 0.977 0.0
357482375438 AP-2 complex subunit mu [Medicago trunca 1.0 1.0 0.965 0.0
356541451438 PREDICTED: AP-2 complex subunit mu-like 1.0 1.0 0.965 0.0
388502264438 unknown [Lotus japonicus] 1.0 1.0 0.970 0.0
356512008438 PREDICTED: AP-2 complex subunit mu-like 1.0 1.0 0.965 0.0
356563467438 PREDICTED: AP-2 complex subunit mu-like 1.0 1.0 0.958 0.0
>gi|224126493|ref|XP_002329568.1| predicted protein [Populus trichocarpa] gi|118485142|gb|ABK94434.1| unknown [Populus trichocarpa] gi|222870277|gb|EEF07408.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  895 bits (2313), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/438 (98%), Positives = 437/438 (99%)

Query: 1   MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFY 60
           MPVAASA+YFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFY
Sbjct: 1   MPVAASAVYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFY 60

Query: 61  MRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIM 120
           MRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIM
Sbjct: 61  MRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIM 120

Query: 121 DFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEV 180
           DFGYPQNLSPEILKLYITQEGVRSPFSSKPTD+PVPNATLQVTGAVGWRREGLVYKKNEV
Sbjct: 121 DFGYPQNLSPEILKLYITQEGVRSPFSSKPTDKPVPNATLQVTGAVGWRREGLVYKKNEV 180

Query: 181 FLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPT 240
           FLDIVESVNLLMSSKG+VLRCDVTGK+LMKCFLSGMPDLKLGLNDKIGLEKESQLKSRP 
Sbjct: 181 FLDIVESVNLLMSSKGNVLRCDVTGKVLMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPA 240

Query: 241 KSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKE 300
           KSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKE
Sbjct: 241 KSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKE 300

Query: 301 LGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKI 360
           LGRTRMEVNVK+KSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNA+IDC+VWKI
Sbjct: 301 LGRTRMEVNVKVKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNAAIDCIVWKI 360

Query: 361 RKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYN 420
           RKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYN
Sbjct: 361 RKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYN 420

Query: 421 TVEWVRYITKAGSYEIRC 438
           TVEWVRYITKAGSYEIRC
Sbjct: 421 TVEWVRYITKAGSYEIRC 438

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225427268|ref|XP_002281297.1| PREDICTED: AP-2 complex subunit mu [Vitis vinifera] gi|297742129|emb|CBI33916.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449461513|ref|XP_004148486.1| PREDICTED: AP-2 complex subunit mu-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356495539|ref|XP_003516634.1| PREDICTED: AP-2 complex subunit mu-like [Glycine max] Back     alignment and taxonomy information
>gi|224138888|ref|XP_002326715.1| predicted protein [Populus trichocarpa] gi|222834037|gb|EEE72514.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357482375|ref|XP_003611473.1| AP-2 complex subunit mu [Medicago truncatula] gi|355512808|gb|AES94431.1| AP-2 complex subunit mu [Medicago truncatula] Back     alignment and taxonomy information
>gi|356541451|ref|XP_003539189.1| PREDICTED: AP-2 complex subunit mu-like [Glycine max] Back     alignment and taxonomy information
>gi|388502264|gb|AFK39198.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356512008|ref|XP_003524713.1| PREDICTED: AP-2 complex subunit mu-like [Glycine max] Back     alignment and taxonomy information
>gi|356563467|ref|XP_003549984.1| PREDICTED: AP-2 complex subunit mu-like isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query438
TAIR|locus:2178500441 AT5G46630 [Arabidopsis thalian 0.942 0.936 0.905 2.5e-200
DICTYBASE|DDB_G0277139439 apm2 "clathrin-adaptor medium 0.979 0.977 0.503 7.7e-119
UNIPROTKB|Q3ZC13435 AP2M1 "AP-2 complex subunit mu 0.970 0.977 0.473 1.9e-108
UNIPROTKB|Q96CW1435 AP2M1 "AP-2 complex subunit mu 0.970 0.977 0.473 1.9e-108
UNIPROTKB|I3LL07435 AP2M1 "Uncharacterized protein 0.970 0.977 0.473 1.9e-108
MGI|MGI:1298405435 Ap2m1 "adaptor-related protein 0.970 0.977 0.473 1.9e-108
RGD|620135435 Ap2m1 "adaptor-related protein 0.970 0.977 0.473 1.9e-108
UNIPROTKB|P84092435 Ap2m1 "AP-2 complex subunit mu 0.970 0.977 0.473 1.9e-108
UNIPROTKB|Q5ZMP6433 AP2M1 "AP-2 complex subunit mu 0.965 0.976 0.473 1.7e-107
UNIPROTKB|F1PQ79436 AP2M1 "Uncharacterized protein 0.965 0.970 0.473 1.7e-107
TAIR|locus:2178500 AT5G46630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1939 (687.6 bits), Expect = 2.5e-200, P = 2.5e-200
 Identities = 374/413 (90%), Positives = 385/413 (93%)

Query:     1 MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFY 60
             MPVAASAIYFLNLRGDVLINR YRDDVGGNMVDAFRTHIMQTKELG CPVRQIGGCSF Y
Sbjct:     1 MPVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIMQTKELGNCPVRQIGGCSFVY 60

Query:    61 MRXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIM 120
             MR                   FKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIM
Sbjct:    61 MRISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIM 120

Query:   121 DFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEV 180
             DFGYPQNLSPEILKLYITQEGVRSPFSSKP D+PVPNATLQVTGAVGWRREGL YKKNEV
Sbjct:   121 DFGYPQNLSPEILKLYITQEGVRSPFSSKPKDKPVPNATLQVTGAVGWRREGLAYKKNEV 180

Query:   181 FLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPT 240
             FLDIVESVNLLMSSKG+VLRCDVTGK+LMKCFLSGMPDLKLGLNDKIGLEKES++KSRP 
Sbjct:   181 FLDIVESVNLLMSSKGNVLRCDVTGKVLMKCFLSGMPDLKLGLNDKIGLEKESEMKSRPA 240

Query:   241 KSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKE 300
             KSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKE
Sbjct:   241 KSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKE 300

Query:   301 LGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKI 360
             LGRTRMEVNVK+KSVFGAKMFALGVV+KIPVPKQTAKT+FQVT+GRAKYN SIDCLVWKI
Sbjct:   301 LGRTRMEVNVKVKSVFGAKMFALGVVVKIPVPKQTAKTNFQVTTGRAKYNPSIDCLVWKI 360

Query:   361 RKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKV 413
             RKFPGQTE T+SAE+ELISTM EKKSWTRPPIQMEFQVPMFTASGLRVRFLKV
Sbjct:   361 RKFPGQTESTLSAEIELISTMGEKKSWTRPPIQMEFQVPMFTASGLRVRFLKV 413
GO:0006810 "transport" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA;ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030125 "clathrin vesicle coat" evidence=ISS
GO:0030131 "clathrin adaptor complex" evidence=IEA
GO:0030132 "clathrin coat of coated pit" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
DICTYBASE|DDB_G0277139 apm2 "clathrin-adaptor medium chain AP-2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZC13 AP2M1 "AP-2 complex subunit mu" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q96CW1 AP2M1 "AP-2 complex subunit mu" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LL07 AP2M1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1298405 Ap2m1 "adaptor-related protein complex 2, mu 1 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620135 Ap2m1 "adaptor-related protein complex 2, mu 1 subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P84092 Ap2m1 "AP-2 complex subunit mu" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZMP6 AP2M1 "AP-2 complex subunit mu" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PQ79 AP2M1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6NWK2AP2MA_DANRENo assigned EC number0.47600.97260.9770yesno
P35603AP2M_CAEELNo assigned EC number0.46860.96800.9614yesno
P84092AP2M1_RATNo assigned EC number0.48630.97260.9793yesno
Q7ZW98AP2MB_DANRENo assigned EC number0.47830.97260.9770yesno
Q5NVF7AP2M1_PONABNo assigned EC number0.48170.97260.9793yesno
Q96CW1AP2M1_HUMANNo assigned EC number0.48630.97260.9793yesno
P54672AP2M_DICDINo assigned EC number0.52050.98170.9794yesno
P84091AP2M1_MOUSENo assigned EC number0.48630.97260.9793yesno
Q00776AP1M1_YEASTNo assigned EC number0.38390.98400.9073yesno
Q9HFE5AP1M1_SCHPONo assigned EC number0.40450.95200.9788yesno
Q3ZC13AP2M1_BOVINNo assigned EC number0.48630.97260.9793yesno
Q5ZMP6AP2M1_CHICKNo assigned EC number0.48630.96800.9792yesno
Q6P856AP2M1_XENTRNo assigned EC number0.48400.97260.9793yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query438
cd09251263 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medi 1e-175
cd09250268 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medi 1e-114
cd09258270 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of med 3e-95
pfam00928228 pfam00928, Adap_comp_sub, Adaptor complexes medium 1e-94
cd09253271 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medi 8e-90
cd09259264 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of med 1e-86
cd07954239 cd07954, AP_MHD_Cterm, C-terminal domain of adapto 4e-68
cd09252248 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medi 4e-61
cd09255308 cd09255, AP-like_stonins_MHD, Mu homology domain ( 4e-36
cd09260254 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of med 1e-33
cd09261254 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of med 3e-31
cd09262309 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) 3e-23
cd09263314 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) 4e-20
cd09256271 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a 4e-09
>gnl|CDD|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2 Back     alignment and domain information 
 Score =  489 bits (1262), Expect = e-175
 Identities = 175/263 (66%), Positives = 217/263 (82%)

Query: 175 YKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQ 234
           Y+KNEVFLD+VESVNLLMSS G+VLR DV G I+MK FLSGMP+ K GLNDK+ LEKE +
Sbjct: 1   YRKNEVFLDVVESVNLLMSSTGTVLRADVDGVIVMKAFLSGMPECKFGLNDKLVLEKEGK 60

Query: 235 LKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRV 294
            KS    +  ++ELDD  FHQCV L++F+SE+T+SF+PPDGEFELM+YRITE +NLPF+V
Sbjct: 61  AKSGDKAAKGSVELDDCKFHQCVRLSKFDSERTISFIPPDGEFELMRYRITENINLPFKV 120

Query: 295 LPTIKELGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASID 354
           LP +KE+GRT++E  VKIKS F  K+FA  VV+KIP PK TAK +  V+ G+AKY+   +
Sbjct: 121 LPLVKEVGRTKLEYKVKIKSNFPPKLFATNVVVKIPTPKNTAKVTVSVSKGKAKYDPEEN 180

Query: 355 CLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVW 414
            +VWKI+KFPG TE T+SAEVEL+ST +E K W+RPPI M+F+VPMFTASGLRVR+LKV+
Sbjct: 181 AIVWKIKKFPGMTESTLSAEVELLSTTSELKKWSRPPISMDFEVPMFTASGLRVRYLKVF 240

Query: 415 EKSGYNTVEWVRYITKAGSYEIR 437
           EKS Y TV+WVRYIT+AGSYEIR
Sbjct: 241 EKSNYKTVKWVRYITRAGSYEIR 263

AP complexes participate in the formation of intracellular coated transport vesicles and select cargo molecules for incorporation into the coated vesicles in the late secretory and endocytic pathways. There are four AP complexes, AP-1, -2, -3, and -4, described in various eukaryotic organisms. Each AP complex consists of four subunits: two large chains (one each of gamma/alpha/delta/epsilon and beta1-4, respectively), a medium mu chain (mu1-4), and a small sigma chain (sigma1-4). Each of the four subunits from the different AP complexes exhibits similarity with each other. This family corresponds to the C-terminal domain of heterotetrameric clathrin-associated adaptor protein complex 2 (AP-2) medium mu2 subunit. Mu2 is ubiquitously expressed in mammals. In higher eukaryotes, AP-2 plays a critical role in clathrin-mediated endocytosis from the plasma membrane in different cells. The membrane-anchored cargo molecules can be linked to the outer lattice of CCVs by AP-2. Those cargo molecules interact with adaptors through short sorting signals in their cytosolic segments. Tyrosine-based endocytotic signals are one of the most important sorting signals. They are of the form Y-X-X-Phi, where Y is tyrosine, X is any amino acid and Phi is a bulky hydrophobic residue that can be Leu, Ile, Met, Phe, or Val. These kinds of sorting signals can be recognized by the C-terminal domain of AP-2 mu2 subunit, also known as Y-X-X-Phi signal-binding domain that contains two hydrophobic pockets, one for the tyrosine-binding and one for the bulky hydrophobic residue-binding. Since the Y-X-X-Phi binding site is buried in the core structure of AP-2, a phosphorylation induced conformational change is required when the cargo molecules binds to AP-2. In addition, the C-terminal domain of mu2 subunit has been shown to bind other molecules. For instance, it can bind phosphoinositides, in particular PI[4,5]P2, which might be involved in the recognition process of the tyrosine-based signals. It can also interact with synaptotagmins, a family of important modulators of calcium-dependent neurosecretion within the synaptic vesicle (SV) membrane. Since many of the other endocytic adaptors responsible for biogenesis of synaptic vesicles exist, in the absence of AP-2, clathrin-mediated endocytosis can still occur. However, the cells may not survive in the complete absence of clathrin as well as AP-2. Length = 263
>gnl|CDD|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211369 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of medium Mu1A subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family Back     alignment and domain information
>gnl|CDD|211364 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medium Mu4 subunit in adaptor protein (AP) complex AP-4 Back     alignment and domain information
>gnl|CDD|211370 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of medium Mu1B subunit in epithelial cell-specific clathrin-associated adaptor protein (AP) complex AP-1 Back     alignment and domain information
>gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD) Back     alignment and domain information
>gnl|CDD|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211366 cd09255, AP-like_stonins_MHD, Mu homology domain (MHD) of adaptor-like proteins (AP-like), stonins Back     alignment and domain information
>gnl|CDD|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit in ubiquitously expressed adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit in neuron-specific adaptor protein (AP) complex AP-3 Back     alignment and domain information
>gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-1 (also called Stoned B-like factor) Back     alignment and domain information
>gnl|CDD|211374 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-2 Back     alignment and domain information
>gnl|CDD|211367 cd09256, AP_MuD_MHD, Mu-homology domain (MHD) of a adaptor protein (AP) encoded by mu-2 related death-inducing gene, MuD (also known as MUDENG) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 438
KOG0938446 consensus Adaptor complexes medium subunit family 100.0
KOG0937424 consensus Adaptor complexes medium subunit family 100.0
KOG2740418 consensus Clathrin-associated protein medium chain 100.0
PF00928262 Adap_comp_sub: Adaptor complexes medium subunit fa 100.0
KOG2635512 consensus Medium subunit of clathrin adaptor compl 100.0
KOG2677922 consensus Stoned B synaptic vesicle biogenesis pro 100.0
PF01217141 Clat_adaptor_s: Clathrin adaptor complex small cha 99.95
COG5030152 APS2 Clathrin adaptor complex, small subunit [Intr 99.83
KOG3343175 consensus Vesicle coat complex COPI, zeta subunit 99.77
KOG0935143 consensus Clathrin adaptor complex, small subunit 99.74
KOG0934145 consensus Clathrin adaptor complex, small subunit 99.73
KOG0936182 consensus Clathrin adaptor complex, small subunit 99.71
COG5541187 RET3 Vesicle coat complex COPI, zeta subunit [Post 99.44
PF10291257 muHD: Muniscin C-terminal mu homology domain; Inte 99.16
PF03164415 Mon1: Trafficking protein Mon1; InterPro: IPR00435 95.01
PF15001189 AP-5_subunit_s1: AP-5 complex subunit sigma-1 94.22
COG5122134 TRS23 Transport protein particle (TRAPP) complex s 94.04
PF08923119 MAPKK1_Int: Mitogen-activated protein kinase kinas 93.14
PF04099142 Sybindin: Sybindin-like family ; InterPro: IPR0072 93.08
KOG3369199 consensus Transport protein particle (TRAPP) compl 89.98
PF1377483 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3 89.33
KOG0997523 consensus Uncharacterized conserved protein Sand [ 88.57
KOG3368140 consensus Transport protein particle (TRAPP) compl 85.88
KOG0859217 consensus Synaptobrevin/VAMP-like protein [Intrace 83.58
KOG0781 587 consensus Signal recognition particle receptor, al 82.27
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1e-109  Score=773.46  Aligned_cols=432  Identities=56%  Similarity=0.925  Sum_probs=396.9

Q ss_pred             eeEEEEEEeCCCCEEEEEcccCCCCCchHHHHHHhhcccccCCCCCeEEECCEEEEEEEeCcEEEEEEEcCCccHHHHHH
Q 013709            4 AASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFK   83 (438)
Q Consensus         4 mI~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~v~~~~~~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~~n~~~~~~   83 (438)
                      ||+++||+|.+|++|+.|.||++..++..|+|+-+++.+.+ ..+|+..+++++|+|.+.++||+|++|.+|.|.++++|
T Consensus         1 misglfi~n~rGevlink~fr~dlkrs~~diFRv~vi~n~d-~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~e   79 (446)
T KOG0938|consen    1 MISGLFIYNLRGEVLINKTFRDDLKRSIVDIFRVQVINNLD-VRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVFE   79 (446)
T ss_pred             CcceEEEEeccCcEEEehhhhhhhhhhHHHHHHHhhhhccc-cCCCeeEecceeEEEEeeccEEEEEEecCCCchhhHHH
Confidence            89999999999999999999999999999999999998754 79999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCcCCHHHHHhhHHHHHHHHHHHHcCCeecccCHHHHhhhhhccCccCCCCCCCC-CCCCCCCc---
Q 013709           84 FVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPT-DRPVPNAT---  159 (438)
Q Consensus        84 ~L~~~~~vl~~y~~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~~~~~~~~~~~~-~~~~~~~~---  159 (438)
                      ||..+.+++..|||+ ++|+.|++||.+||||||||+|+||||+|++++|+.+|..++.++..+-... .....+++   
T Consensus        80 Fl~kl~avm~aYfgk-~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~~Vrs~g~~ls~k~s~~sq~~~~~  158 (446)
T KOG0938|consen   80 FLYKLDAVMNAYFGK-DREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQKGVRSMGGVLSSKSSPTSQATELR  158 (446)
T ss_pred             HHHHHHHHHHHHhcc-cchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhhhhhccccccCCcCCCCccccccc
Confidence            999999999999998 9999999999999999999999999999999999999999888765331000 01112232   


Q ss_pred             -ccccceeecccCCCccccceEEEEEEEeEEEEEecccceEEEEEEEEEEEEEeecCCCeeEEEecCcccccccccc---
Q 013709          160 -LQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQL---  235 (438)
Q Consensus       160 -~~~~~~~~WR~~~~~~~~nei~vdV~E~l~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~---  235 (438)
                       ++.+++++||+.|++|+|||+|+||+|++|.+++++|++++++|+|.|.|+|+|||||+|+++|||++.+...+..   
T Consensus       159 ssqv~G~i~WRr~Gi~ykknevfldvvErvNlLmS~~GnVLrs~VsG~V~mk~~LSGmPeckfGlNDkl~~e~kq~esks  238 (446)
T KOG0938|consen  159 SSQVTGKIGWRREGIKYKKNEVFLDVVERVNLLMSSDGNVLRSDVSGTVDMKTHLSGMPECKFGLNDKLGMESKQSESKS  238 (446)
T ss_pred             ccccccccccccccceeccceeEeEehheeeeEEcCCCCEEEeecccEEEEEEeccCCcccccccCcccceeeccccccc
Confidence             6778999999999999999999999999999999999999999999999999999999999999999876633221   


Q ss_pred             cC----CCC-CCCceEeeccceeeeeccccCccCcceEEEeCCCCeEEEEEEEecCCCCCCeEEEEEEEEcCceEEEEEE
Q 013709          236 KS----RPT-KSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNV  310 (438)
Q Consensus       236 ~~----~~~-~~~~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~P~~v~~~~~~~~~~~~e~~l  310 (438)
                      +.    .+. +....+.|+||+||+||++++|++++.|+|+||||+|+||+||++.+..+||+|.|.+++.|.+++|+++
T Consensus       239 ~~~n~~~~sks~~g~v~leDc~FHqCV~L~kFn~eh~IsFvPPDGe~ELMkYr~~enInlPFrV~PiV~el~r~kie~ri  318 (446)
T KOG0938|consen  239 DFGNKNFPSKSGKGSVLLEDCTFHQCVRLDKFNSEHIISFVPPDGEFELMKYRVTENINLPFRVTPIVTELGRTKIEYRI  318 (446)
T ss_pred             cccccCCCcccCCceEEeeccchheeeccccccccceEEEeCCCCceEeEeeeeccCcccceEeeeheecccceeEEEEE
Confidence            11    122 2334599999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCceeeeeEEEEeeCCCCCceeEEEEceeEEEEeccCcEEEEEeeecCCCCeeEEEEEEEeeccccccCCCCCC
Q 013709          311 KIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRP  390 (438)
Q Consensus       311 ~l~~~~~~~~~~~~v~i~ip~P~~~~~~~~~~~~G~~~~~~~~~~i~W~I~k~~g~~~~~l~~~~~~~~~~~~~~~~~~~  390 (438)
                      .+++.|++++.+.+|.++||+|+++..+.++++.|+|+|.+.+++++|+|++++|.+|.+|++++++.+..++.+.|..|
T Consensus       319 ~iks~f~~kl~a~~v~~rIPvP~ntv~~n~~v~~Gkaky~psen~ivWki~kf~G~tE~tlsAevels~Tt~nkq~WtrP  398 (446)
T KOG0938|consen  319 TIKSLFPPKLLAKDVVVRIPVPPNTVKCNISVSNGKAKYVPSENAIVWKINKFNGLTESTLSAEVELSDTTQNKQQWTRP  398 (446)
T ss_pred             EEeccCCchhhhcceEEEecCCCccccceeEEecCccccCcccceEEEEecccCCcccceeEEEEEeccCccccccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999998874467789999


Q ss_pred             CeEEEEEeCcccccccEEEEEEEeec-CCCcccccEEEEEecCcEEEe
Q 013709          391 PIQMEFQVPMFTASGLRVRFLKVWEK-SGYNTVEWVRYITKAGSYEIR  437 (438)
Q Consensus       391 pi~v~F~i~~~t~SGl~V~~l~v~~~-~~~~~~k~vrY~t~sg~Y~~R  437 (438)
                      ||+|+|++|||+.|||.|+|++|.++ ++|+..|||||+|+||+||+|
T Consensus       399 PIsleFeV~MFt~SGL~VrylkV~e~~Sk~~~vkWVrYitkaGsyEiR  446 (446)
T KOG0938|consen  399 PISLEFEVPMFTNSGLVVRYLKVSEKDSKHRAVKWVRYITKAGSYEIR  446 (446)
T ss_pred             CceeEEeeeeecCCceEEEEEEEecccCCCceEEEEEEecccceeeeC
Confidence            99999999999999999999999984 599999999999999999998

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans Back     alignment and domain information
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain Back     alignment and domain information
>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1 Back     alignment and domain information
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses Back     alignment and domain information
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D Back     alignment and domain information
>KOG0997 consensus Uncharacterized conserved protein Sand [Function unknown] Back     alignment and domain information
>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query438
2bp5_M435 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 1e-119
2xa7_M446 Ap2 Clathrin Adaptor Core In Active Complex With Ca 1e-118
1w63_M423 Ap1 Clathrin Adaptor Core Length = 423 1e-100
1i31_A314 Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, 5e-89
1bw8_A321 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 6e-89
1bxx_A285 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 3e-82
2pr9_A299 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 4e-82
1h6e_A288 Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D 8e-79
3ml6_A385 A Complex Between Dishevlled2 And Clathrin Adaptor 1e-76
4en2_M266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 9e-69
4emz_A266 Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain 4e-66
3l81_A301 Crystal Structure Of Adaptor Protein Complex 4 (Ap- 2e-35
4ikn_A261 Crystal Structure Of Adaptor Protein Complex 3 (ap- 7e-30
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Non-Canonical Internalization Peptide Vedyeqglsg Length = 435 Back     alignment and structure 
Iteration: 1

 Score =  425 bits (1093), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/438 (47%), Positives = 297/438 (67%), Gaps = 12/438 (2%)
Query: 7   AIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRXXXX 66
            ++  N +G+VLI+R+YRDD+G N VDAFR +++  ++    PV  I   SFF+++    
Sbjct: 4   GLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNI 63
Query: 67  XXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQ 126
                          F+F+ +   +  +YFG    E+ I+NNFVLIYELLDEI+DFGYPQ
Sbjct: 64  WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYPQ 122
Query: 127 NLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVE 186
           N     LK +ITQ+G++S   +K     +   T QVTG +GWRREG+ Y++NE+FLD++E
Sbjct: 123 NSETGALKTFITQQGIKSQHQTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVLE 179
Query: 187 SVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPT-KSGK- 244
           SVNLLMS +G VL   V+G+++MK +LSGMP+ K G+NDKI +EK+ +  +  T KSGK 
Sbjct: 180 SVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQ 239
Query: 245 TIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRT 304
           +I +DD TFHQCV L++F+SE+++SF+PPDGEFELM+YR T+ + LPFRV+P ++E+GRT
Sbjct: 240 SIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRT 299
Query: 305 RMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFP 364
           ++EV V IKS F   + A  + ++IP P  T+        G+AKY AS + +VWKI++  
Sbjct: 300 KLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMA 359
Query: 365 GQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEK----SGYN 420
           G  E  +SAE+EL+ T  +KK W RPPI M F+VP F  SGL+VR+LKV+E     S ++
Sbjct: 360 GMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHD 417
Query: 421 TVEWVRYITKAGSYEIRC 438
            ++WVRYI ++G YE RC
Sbjct: 418 VIKWVRYIGRSGIYETRC 435
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 446 Back     alignment and structure
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core Length = 423 Back     alignment and structure
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, Complexed With Egfr Internalization Peptide Fyralm At 2.5 A Resolution Length = 314 Back     alignment and structure
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Egfr Internalization Peptide Fyralm Length = 321 Back     alignment and structure
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Tgn38 Internalization Peptide Dyqrln Length = 285 Back     alignment and structure
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Gabaa Receptor-Gamma2 Subunit-Derived Internalization Peptide Deeygyecl Length = 299 Back     alignment and structure
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Ctla-4 Internalization Peptide Ttgvyvkmppt Length = 288 Back     alignment and structure
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2 Length = 385 Back     alignment and structure
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 Back     alignment and structure
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4 Su Terminal Domain, In Complex With A Sorting Peptide From The Precursor Protein (App) Length = 301 Back     alignment and structure
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a Subunit C- Terminal Domain, In Complex With A Sorting Peptide From Tgn38 Length = 261 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query438
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 1e-130
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 1e-126
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 1e-106
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 1e-101
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 9e-92
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 1e-88
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 5e-25
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 6e-23
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 1e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 Back     alignment and structure
 Score =  382 bits (982), Expect = e-130
 Identities = 208/439 (47%), Positives = 301/439 (68%), Gaps = 12/439 (2%)

Query: 6   SAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISN 65
             ++  N +G+VLI+R+YRDD+G N VDAFR +++  ++    PV  I   SFF+++ SN
Sbjct: 3   GGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSN 62

Query: 66  VYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYP 125
           +++  V   N N A  F+F+ +   +  +YFG    E+ I+NNFVLIYELLDEI+DFGYP
Sbjct: 63  IWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYP 121

Query: 126 QNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIV 185
           QN     LK +ITQ+G++S   +K         T QVTG +GWRREG+ Y++NE+FLD++
Sbjct: 122 QNSETGALKTFITQQGIKSQHQTKEEQ---SQITSQVTGQIGWRREGIKYRRNELFLDVL 178

Query: 186 ESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKS--RPTKSG 243
           ESVNLLMS +G VL   V+G+++MK +LSGMP+ K G+NDKI +EK+ +  +        
Sbjct: 179 ESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK 238

Query: 244 KTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGR 303
           ++I +DD TFHQCV L++F+SE+++SF+PPDGEFELM+YR T+ + LPFRV+P ++E+GR
Sbjct: 239 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGR 298

Query: 304 TRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKF 363
           T++EV V IKS F   + A  + ++IP P  T+        G+AKY AS + +VWKI++ 
Sbjct: 299 TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRM 358

Query: 364 PGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEK----SGY 419
            G  E  +SAE+EL+ T  +KK W RPPI M F+VP F  SGL+VR+LKV+E     S +
Sbjct: 359 AGMKESQISAEIELLPTNDKKK-WARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDH 416

Query: 420 NTVEWVRYITKAGSYEIRC 438
           + ++WVRYI ++G YE RC
Sbjct: 417 DVIKWVRYIGRSGIYETRC 435
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314 Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385 Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266 Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142 Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158 Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query438
2vgl_M435 AP-2 complex subunit MU-1; cytoplasmic vesicle, al 100.0
1w63_M423 Adaptor-related protein complex 1, MU 1 subunit; e 100.0
1i31_A314 Clathrin coat assembly protein AP50; beta-sandwich 100.0
4en2_M266 AP-1 complex subunit MU-1; human immunodeficiency 100.0
3ml6_A385 Chimeric complex between protein dishevlled2 HOMO 100.0
3l81_A301 AP-4 complex subunit MU-1; immunoglobulin-like bet 100.0
1w63_Q158 Adapter-related protein complex 1 sigma 1A subunit 99.98
2vgl_S142 AP-2 complex subunit sigma-1; cytoplasmic vesicle, 99.97
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 99.97
3g9h_A328 Suppressor of yeast profilin deletion; SYP1, MU, a 98.96
3bw6_A144 Synaptobrevin homolog YKT6; YKT6P, farnesylation, 94.66
4b93_A189 Vesicle-associated membrane protein 7; endocytosis 93.68
2j3t_C145 Trafficking protein particle complex subunit 1, tr 93.37
3cue_A219 Transport protein particle 23 kDa subunit; membran 93.31
3cpt_A143 Mitogen-activated protein kinase kinase 1- interac 92.46
4afi_A173 AP-3 complex subunit delta-1, vesicle-associated p 91.76
2nut_C196 Vesicle-trafficking protein SEC22B; human copii SE 91.6
3cue_C159 Transport protein particle 18 kDa subunit; membran 90.7
2j3w_A142 Sedlin, trafficking protein particle complex prote 89.7
2vx8_A169 Nucleoporin-like protein RIP, vesicle-associated m 88.28
3kyq_A199 YKT6, synaptobrevin homolog YKT6; V-snare homolog, 88.01
2fh5_A185 Signal recognition particle receptor alpha subunit 85.68
1nrj_A158 Signal recognition particle receptor alpha subunit 85.29
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Back     alignment and structure
Probab=100.00  E-value=1.9e-100  Score=783.86  Aligned_cols=429  Identities=48%  Similarity=0.920  Sum_probs=372.0

Q ss_pred             eeEEEEEEeCCCCEEEEEcccCCCCCchHHHHHHhhcccccCCCCCeEEECCEEEEEEEeCcEEEEEEEcCCccHHHHHH
Q 013709            4 AASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFK   83 (438)
Q Consensus         4 mI~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~v~~~~~~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~~n~~~~~~   83 (438)
                      ||+++||+|++|+++++|+|+++.+++.++.|.+++....+...+|++++++++|+|+++++|||+++++.++|++++++
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le   80 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFE   80 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSSCCHHHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHH
T ss_pred             CeEEEEEECCCCCEEEEEecCCCCChhHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHH
Confidence            89999999999999999999998888889999998886543468899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCcCCHHHHHhhHHHHHHHHHHHHcCCeecccCHHHHhhhhhccCccCCCCCCCCCCCCCCCccccc
Q 013709           84 FVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVT  163 (438)
Q Consensus        84 ~L~~~~~vl~~y~~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (438)
                      |||+|+++|++|||. ++|++|++||+.||++||||+|+|+|++||+++|++++.++++++++...  +.. ...+++++
T Consensus        81 ~L~~~v~vl~~yf~~-v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~--~~~-~~~~~~~~  156 (435)
T 2vgl_M           81 FLYKMCDVMAAYFGK-ISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTK--EEQ-SQITSQVT  156 (435)
T ss_dssp             HHHHHHHHHHHHHSS-CCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC------------------
T ss_pred             HHHHHHHHHHHHHhc-cCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcccccccccccc--ccc-cccccccc
Confidence            999999999999998 99999999999999999999999999999999999999999986543211  111 23445667


Q ss_pred             ceeecccCCCccccceEEEEEEEeEEEEEecccceEEEEEEEEEEEEEeecCCCeeEEEecCccccccccccc--CCCCC
Q 013709          164 GAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLK--SRPTK  241 (438)
Q Consensus       164 ~~~~WR~~~~~~~~nei~vdV~E~l~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~--~~~~~  241 (438)
                      +++|||+.|++|++|||||||+|+++++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..++.....+  .++..
T Consensus       157 ~~i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~  236 (435)
T 2vgl_M          157 GQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKS  236 (435)
T ss_dssp             --CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC--------------
T ss_pred             cccccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhccccccccccccccc
Confidence            8899999999999999999999999999999999999999999999999999999999999987765432100  00000


Q ss_pred             CCceEeeccceeeeeccccCccCcceEEEeCCCCeEEEEEEEecCCCCCCeEEEEEEEEcCceEEEEEEEEeecCCCcee
Q 013709          242 SGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMF  321 (438)
Q Consensus       242 ~~~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~P~~v~~~~~~~~~~~~e~~l~l~~~~~~~~~  321 (438)
                      ...++.|+||+||||||+++|+++|+|+|+||||+|+||+||++.+..+||.++|++++.|++++|++++++++++++..
T Consensus       237 ~~~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~  316 (435)
T 2vgl_M          237 GKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLL  316 (435)
T ss_dssp             ---CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEECCTTTEEEEEEEEEECSCTTSE
T ss_pred             ccCceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEecCCCEEEEEEEEeCCCCCCce
Confidence            12467899999999999999999999999999999999999999888899999999997777799999999999998888


Q ss_pred             eeeEEEEeeCCCCCceeEEEEceeEEEEeccCcEEEEEeeecCCCCeeEEEEEEEeeccccccCCCCCCCeEEEEEeCcc
Q 013709          322 ALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMF  401 (438)
Q Consensus       322 ~~~v~i~ip~P~~~~~~~~~~~~G~~~~~~~~~~i~W~I~k~~g~~~~~l~~~~~~~~~~~~~~~~~~~pi~v~F~i~~~  401 (438)
                      +++|.|+||+|+++..++++++.|+++|++++++++|+|++++|+++++|+|++++.+. .....+.++||+|+|++| +
T Consensus       317 ~~~V~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~-~~~~~~~~~pi~v~F~i~-~  394 (435)
T 2vgl_M          317 AQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-F  394 (435)
T ss_dssp             EEEEEEEEECCSSCCCEEEEESSSEEEEETTTTEEEEEEEEEETTCEEEEEEEEECCCC-SCSCCCCCCCEEEEEEES-S
T ss_pred             eeEEEEEEECCCCCCCceEEecceeEEEccCCCEEEEEeccCCCCCCEEEEEEEEecCC-CcCcccCCCcEEEEEEEE-e
Confidence            99999999999999999999999999999999999999999999999999999999764 224567799999999999 9


Q ss_pred             cccccEEEEEEEeec----CCCcccccEEEEEecCcEEEeC
Q 013709          402 TASGLRVRFLKVWEK----SGYNTVEWVRYITKAGSYEIRC  438 (438)
Q Consensus       402 t~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~Y~~R~  438 (438)
                      ++||++|++|+|.++    ++|+|+|||||+|+||+|++|+
T Consensus       395 t~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY~t~sg~y~~R~  435 (435)
T 2vgl_M          395 APSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  435 (435)
T ss_dssp             CTTCCCEEEEEEECSSSSCBGGGSEEEEEEEEEEEEEEECC
T ss_pred             cccccEEEEEEEeccccccCCCCCcCceEEEEeCCeEEEcC
Confidence            999999999999986    4899999999999999999996
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Back     alignment and structure
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Back     alignment and structure
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Back     alignment and structure
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Back     alignment and structure
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A Back     alignment and structure
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A Back     alignment and structure
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus} Back     alignment and structure
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A Back     alignment and structure
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens} Back     alignment and structure
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Back     alignment and structure
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A Back     alignment and structure
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A Back     alignment and structure
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus} Back     alignment and structure
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1 Back     alignment and structure
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 438
d2pr9a1277 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s 1e-104
d2vglm2141 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass 6e-37
d2vgls_142 d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem 2e-21
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  309 bits (792), Expect = e-104
 Identities = 139/279 (49%), Positives = 199/279 (71%), Gaps = 8/279 (2%)

Query: 166 VGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLND 225
           +GWRREG+ Y++NE+FLD++ESVNLLMS +G VL   V+G+++MK +LSGMP+ K G+ND
Sbjct: 1   IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 60

Query: 226 KIGLEKE--SQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYR 283
           KI +EK+             ++I +DD TFHQCV L++F+SE+++SF+PPDGEFELM+YR
Sbjct: 61  KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 120

Query: 284 ITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVT 343
            T+ + LPFRV+P ++E+GRT++EV V IKS F   + A  + ++IP P  T+       
Sbjct: 121 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICM 180

Query: 344 SGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTA 403
            G+AKY AS + +VWKI++  G  E  +SAE+EL+ T  +KK W RPPI M F+VP F  
Sbjct: 181 KGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAP 238

Query: 404 SGLRVRFLKVWEK----SGYNTVEWVRYITKAGSYEIRC 438
           SGL+VR+LKV+E     S ++ ++WVRYI ++G YE RC
Sbjct: 239 SGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 277

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query438
d2pr9a1277 Second domain of Mu2 adaptin subunit (ap50) of ap2 100.0
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 100.0
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 99.96
d3cpta1116 MEK binding partner 1, MP1 {Human (Homo sapiens) [ 94.56
d2fh5a1129 Signal recognition particle receptor alpha subunit 91.7
d1nrja_155 Srx domain of the signal recognition particle rece 80.07
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.7e-68  Score=514.47  Aligned_cols=271  Identities=51%  Similarity=0.992  Sum_probs=236.2

Q ss_pred             eecccCCCccccceEEEEEEEeEEEEEecccceEEEEEEEEEEEEEeecCCCeeEEEecCcccccccccc--cCCCCCCC
Q 013709          166 VGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQL--KSRPTKSG  243 (438)
Q Consensus       166 ~~WR~~~~~~~~nei~vdV~E~l~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~--~~~~~~~~  243 (438)
                      +|||++|++|++|||||||+|+++++++++|.++.++|+|+|.|+|+|+|+|+|+|+||++..++.....  ...+....
T Consensus         1 i~WR~~~i~y~~NEi~vDV~E~i~~~~~~~G~~~~~~V~G~I~~~s~LsG~P~~~l~Ln~~~~~~~~~~~~~~~~~~~~~   80 (277)
T d2pr9a1           1 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK   80 (277)
T ss_dssp             CTTSCSCCCCSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSSCEEEEEESBC------------------C
T ss_pred             CCccCCCCcccCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEecCCCCeEEEEecchhhccccccccccccccccc
Confidence            5999999999999999999999999999999999999999999999999999999999998776654322  11122345


Q ss_pred             ceEeeccceeeeeccccCccCcceEEEeCCCCeEEEEEEEecCCCCCCeEEEEEEEEcCceEEEEEEEEeecCCCceeee
Q 013709          244 KTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMFAL  323 (438)
Q Consensus       244 ~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~P~~v~~~~~~~~~~~~e~~l~l~~~~~~~~~~~  323 (438)
                      .++.|+||+||+|||++.|+++|+|+|+||||+|+||+||+..+..+||.+.+++...++++++++++++++++.+..++
T Consensus        81 ~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Y~~~~~~~~P~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~~  160 (277)
T d2pr9a1          81 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQ  160 (277)
T ss_dssp             CCBCCSEEEECTTSBCC-----CCEEECCCSEEEEEEEEEECSSCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEE
T ss_pred             CceEccceeeeeccccccccccceEeecCCCCcEEEEEEEcCCCcCCCcEEEEEEEeccCcEEEEEEEEEeccCCCeeee
Confidence            67899999999999999999999999999999999999999988899999999998877789999999999999999999


Q ss_pred             eEEEEeeCCCCCceeEEEEceeEEEEeccCcEEEEEeeecCCCCeeEEEEEEEeeccccccCCCCCCCeEEEEEeCcccc
Q 013709          324 GVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTA  403 (438)
Q Consensus       324 ~v~i~ip~P~~~~~~~~~~~~G~~~~~~~~~~i~W~I~k~~g~~~~~l~~~~~~~~~~~~~~~~~~~pi~v~F~i~~~t~  403 (438)
                      +|.|+||+|.++..++++++.|+++|+.++++++|+|++++++++++|+|++++.+. .....+.++||+|+|++| +++
T Consensus       161 ~v~I~iP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~k~~~~~~~~l~~~~~~~~~-~~~~~~~~~pi~v~F~ip-~t~  238 (277)
T d2pr9a1         161 KIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAP  238 (277)
T ss_dssp             EEEEEEECCTTEEEEEEEESSSEEEEEGGGTEEEEEEEEEETTCEEEEEEEEEECCC-CSSSCCCCCCEEEEEEES-SCT
T ss_pred             EEEEEeeCCCcccCceEEecCceEEEeccCCEEEEecccccCCccceEEEEEEeccC-CCCccccCCcEEEEEEec-ccc
Confidence            999999999999999999999999999999999999999999999999999999776 344456689999999999 899


Q ss_pred             cccEEEEEEEeecC----CCcccccEEEEEecCcEEEeC
Q 013709          404 SGLRVRFLKVWEKS----GYNTVEWVRYITKAGSYEIRC  438 (438)
Q Consensus       404 SGl~V~~l~v~~~~----~~~~~k~vrY~t~sg~Y~~R~  438 (438)
                      ||++|++|+|.+..    +|+|+|||||+|+||+||+|+
T Consensus       239 Sgl~V~~l~v~~~~~~~~~~~~~k~vrY~t~sg~Y~~R~  277 (277)
T d2pr9a1         239 SGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC  277 (277)
T ss_dssp             TCCCEEEEEEECSSSSCCGGGSEEEEEEEEEEEEEEECC
T ss_pred             cceEEEEEEEeccccCCCCCCCCCCEEEEEECCCEEECC
Confidence            99999999998642    689999999999999999996
>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nrja_ d.110.4.4 (A:) Srx domain of the signal recognition particle receptor alpha-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure