Citrus Sinensis ID: 013718

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
MGTQGPATTDQNYNHATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPLQSSKTFSFLSFFFFGTVQQLIYYTKSPYLTFCFN
ccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHEEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEEccccEEEEEccc
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHEEEHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHEHcHHHHHHEHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mgtqgpattdqnynhaTSEEQAAKQKAiddwlpitssrnaKWWYSAFHNVTAMVGAGVLSLPYAmaqlgwgpGVAILILSWIITLYTLWQMVEMhemvpgkrfdryhELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCkepckeikLSYFIMIFASVHFVLshlpnfnaiAGVSLAAAVMSLSYSTIAWSasvrkgvqpdvaygykaktaagTVFNFFSALGDVAFAYAGHNVVLEIQatipstpekpskgpmwrGVVVAYIVVALCYFPVALIGYWMFGNKVEDNIllslekptwlIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKklnfsptrLLRFVVRNLYVASTMFIgitfpffggllgffggfafapttyfvsqilplqssktfsflsfFFFGTVQQLIyytkspyltfcfn
mgtqgpattdqnynhATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIpstpekpskgpMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPLQSSKTFSFLSFFFFGTVQQLIYYTkspyltfcfn
MGTQGPATTDQNYNHATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMfigitfpffggllgffggfafaptTYFVSQILPLQssktfsflsffffGTVQQLIYYTKSPYLTFCFN
***************************IDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATI**********PMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPLQSSKTFSFLSFFFFGTVQQLIYYTKSPYLTFCF*
***************************************AKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPS*P**PSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPLQSSKTFSFLSFFFFGTVQQLIYYTKSPYLTFCFN
*************************KAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPLQSSKTFSFLSFFFFGTVQQLIYYTKSPYLTFCFN
****************************DDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPLQSSKTFSFLSFFFFGTVQQLIYYTKSPYLTFCFN
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHi
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooo
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MGTQGPATTDQNYNHATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPLQSSKTFSFLSFFFFGTVQQLIYYTKSPYLTFCFN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query437 2.2.26 [Sep-21-2011]
Q9FKS8446 Lysine histidine transpor yes no 0.885 0.867 0.840 0.0
Q9C733453 Lysine histidine transpor no no 0.899 0.867 0.762 1e-176
Q9LRB5441 Lysine histidine transpor no no 0.913 0.904 0.761 1e-171
Q9SR44441 Lysine histidine transpor no no 0.906 0.897 0.753 1e-163
O22719451 Lysine histidine transpor no no 0.922 0.893 0.643 1e-156
Q9SS86455 Lysine histidine transpor no no 0.901 0.865 0.647 1e-151
Q9C6M2440 Lysine histidine transpor no no 0.892 0.886 0.601 1e-129
Q9C9J0448 Lysine histidine transpor no no 0.917 0.895 0.572 1e-117
Q9SX98519 Lysine histidine transpor no no 0.810 0.682 0.384 4e-69
Q84WE9478 Lysine histidine transpor no no 0.876 0.801 0.300 6e-52
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/389 (84%), Positives = 358/389 (92%), Gaps = 2/389 (0%)

Query: 14  NHATSEE-QAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGP 72
           +H   E+  AA+QK I+DWLPITSSRNAKWWYSAFHNVTAMVGAGVL LPYAM+QLGWGP
Sbjct: 9   DHQDDEKLAAARQKEIEDWLPITSSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGP 68

Query: 73  GVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEV 132
           G+A+L+LSW+ITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVE+
Sbjct: 69  GIAVLVLSWVITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEI 128

Query: 133 GVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192
           GVCIVYMVTGGKSL K HEL+C + CK IKL+YFIMIFASVHFVLSHLPNFN+I+GVSLA
Sbjct: 129 GVCIVYMVTGGKSLKKFHELVCDD-CKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLA 187

Query: 193 AAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLE 252
           AAVMSLSYSTIAW++S  KGVQ DV YGYKAKT AGTVFNFFS LGDVAFAYAGHNVVLE
Sbjct: 188 AAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLE 247

Query: 253 IQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTW 312
           IQATIPSTPEKPSKGPMWRGV+VAYIVVALCYFPVAL+GY++FGN VEDNIL+SL+KP W
Sbjct: 248 IQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKPAW 307

Query: 313 LIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIG 372
           LI  AN FVV+HVIGSYQIYAMPVFDM+ETLLVKKLNF PT  LRF VRN YVA+TMF+G
Sbjct: 308 LIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATMFVG 367

Query: 373 ITFPFFGGLLGFFGGFAFAPTTYFVSQIL 401
           +TFPFFGGLL FFGGFAFAPTTYF+  ++
Sbjct: 368 MTFPFFGGLLAFFGGFAFAPTTYFLPCVI 396
Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description
>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2 Back     alignment and function description
>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2 Back     alignment and function description
>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1 Back     alignment and function description
>sp|Q84WE9|LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
297805586445 hypothetical protein ARALYDRAFT_916150 [ 0.908 0.892 0.834 0.0
356574036450 PREDICTED: lysine histidine transporter 0.938 0.911 0.800 0.0
30693666445 Lysine histidine transporter 1 [Arabidop 0.885 0.869 0.840 0.0
30693663446 Lysine histidine transporter 1 [Arabidop 0.885 0.867 0.840 0.0
225452181442 PREDICTED: lysine histidine transporter 0.897 0.886 0.822 0.0
357454949487 Lysine/histidine transporter [Medicago t 0.947 0.850 0.746 0.0
356558767465 PREDICTED: lysine histidine transporter 0.940 0.883 0.770 0.0
356558769450 PREDICTED: lysine histidine transporter 0.938 0.911 0.819 0.0
255537003440 amino acid transporter, putative [Ricinu 0.883 0.877 0.863 0.0
356571417451 PREDICTED: lysine histidine transporter 0.935 0.906 0.779 0.0
>gi|297805586|ref|XP_002870677.1| hypothetical protein ARALYDRAFT_916150 [Arabidopsis lyrata subsp. lyrata] gi|297316513|gb|EFH46936.1| hypothetical protein ARALYDRAFT_916150 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/398 (83%), Positives = 361/398 (90%), Gaps = 1/398 (0%)

Query: 14  NHATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPG 73
           +H   E+ AA+QK ID+WLPITSSRNAKWWYSAFHNVTAMVGAGVL LPYAM+QLGWGPG
Sbjct: 9   DHQDDEKLAARQKEIDEWLPITSSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGPG 68

Query: 74  VAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVG 133
           +A+L+LSW+ITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVE+G
Sbjct: 69  IAVLVLSWVITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIG 128

Query: 134 VCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193
           VCIVYMVTGGKSL K HEL+C E CK IKL+YFIMIFASVHFVLSHLPNFN+I+GVSLAA
Sbjct: 129 VCIVYMVTGGKSLKKFHELVC-EDCKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLAA 187

Query: 194 AVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEI 253
           AVMSLSYSTIAW++S  KGVQ DV YGYKAKT AGTVFNFFS LGDVAFAYAGHNVVLEI
Sbjct: 188 AVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLEI 247

Query: 254 QATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWL 313
           QATIPSTPEKPSKGPMWRGV+VAYIVVALCYFPVAL+GY++FGN VEDNIL+SL+KP WL
Sbjct: 248 QATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKPAWL 307

Query: 314 IVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTMFIGI 373
           I  AN FVV+HVIGSYQIYAMPVFDM+ETLLVKKLNF PT  LRF VRN YVA+TMF+G+
Sbjct: 308 IATANIFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATMFVGM 367

Query: 374 TFPFFGGLLGFFGGFAFAPTTYFVSQILPLQSSKTFSF 411
           TFPFFGGLL FFGGFAFAPTTYF+  I+ L   K   F
Sbjct: 368 TFPFFGGLLAFFGGFAFAPTTYFLPCIIWLAIYKPKKF 405

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356574036|ref|XP_003555159.1| PREDICTED: lysine histidine transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|30693666|ref|NP_198894.2| Lysine histidine transporter 1 [Arabidopsis thaliana] gi|332007211|gb|AED94594.1| Lysine histidine transporter 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30693663|ref|NP_851109.1| Lysine histidine transporter 1 [Arabidopsis thaliana] gi|75262627|sp|Q9FKS8.1|LHT1_ARATH RecName: Full=Lysine histidine transporter 1 gi|14194151|gb|AAK56270.1|AF367281_1 AT5g40780/K1B16_3 [Arabidopsis thaliana] gi|10177957|dbj|BAB11340.1| amino acid permease [Arabidopsis thaliana] gi|22137070|gb|AAM91380.1| At5g40780/K1B16_3 [Arabidopsis thaliana] gi|332007210|gb|AED94593.1| Lysine histidine transporter 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225452181|ref|XP_002265308.1| PREDICTED: lysine histidine transporter 1 [Vitis vinifera] gi|296090261|emb|CBI40080.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357454949|ref|XP_003597755.1| Lysine/histidine transporter [Medicago truncatula] gi|355486803|gb|AES68006.1| Lysine/histidine transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|356558767|ref|XP_003547674.1| PREDICTED: lysine histidine transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356558769|ref|XP_003547675.1| PREDICTED: lysine histidine transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|255537003|ref|XP_002509568.1| amino acid transporter, putative [Ricinus communis] gi|223549467|gb|EEF50955.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356571417|ref|XP_003553873.1| PREDICTED: lysine histidine transporter 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
TAIR|locus:2154815446 LHT1 "lysine histidine transpo 0.812 0.795 0.848 1.6e-166
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.798 0.791 0.811 1.5e-154
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.816 0.809 0.782 4e-154
TAIR|locus:2008154453 AT1G48640 [Arabidopsis thalian 0.826 0.796 0.763 2.8e-153
TAIR|locus:2008605441 AT1G67640 "AT1G67640" [Arabido 0.803 0.795 0.778 3.7e-151
TAIR|locus:2008435451 AT1G61270 [Arabidopsis thalian 0.899 0.871 0.614 1.4e-133
TAIR|locus:2031215440 AT1G25530 [Arabidopsis thalian 0.803 0.797 0.599 7.1e-116
TAIR|locus:2013056448 AT1G71680 [Arabidopsis thalian 0.816 0.796 0.591 1.2e-111
TAIR|locus:2015383519 AT1G47670 [Arabidopsis thalian 0.734 0.618 0.398 1.1e-64
TAIR|locus:2132816478 LHT7 "LYS/HIS transporter 7" [ 0.759 0.694 0.320 1.5e-49
TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1620 (575.3 bits), Expect = 1.6e-166, P = 1.6e-166
 Identities = 303/357 (84%), Positives = 329/357 (92%)

Query:    14 NHATSEE-QAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGP 72
             +H   E+  AA+QK I+DWLPITSSRNAKWWYSAFHNVTAMVGAGVL LPYAM+QLGWGP
Sbjct:     9 DHQDDEKLAAARQKEIEDWLPITSSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGP 68

Query:    73 GVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEV 132
             G+A+L+LSW+ITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVE+
Sbjct:    69 GIAVLVLSWVITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEI 128

Query:   133 GVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192
             GVCIVYMVTGGKSL K HEL+C + CK IKL+YFIMIFASVHFVLSHLPNFN+I+GVSLA
Sbjct:   129 GVCIVYMVTGGKSLKKFHELVCDD-CKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLA 187

Query:   193 AAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLE 252
             AAVMSLSYSTIAW++S  KGVQ DV YGYKAKT AGTVFNFFS LGDVAFAYAGHNVVLE
Sbjct:   188 AAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLE 247

Query:   253 IQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTW 312
             IQATIPSTPEKPSKGPMWRGV+VAYIVVALCYFPVAL+GY++FGN VEDNIL+SL+KP W
Sbjct:   248 IQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKPAW 307

Query:   313 LIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVASTM 369
             LI  AN FVV+HVIGSYQIYAMPVFDM+ETLLVKKLNF PT  LRF VRN YVA+TM
Sbjct:   308 LIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATM 364
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006865 "amino acid transport" evidence=ISS;RCA
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP
GO:0016020 "membrane" evidence=ISS
GO:0043090 "amino acid import" evidence=RCA;IMP
GO:0080167 "response to karrikin" evidence=IEP
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006820 "anion transport" evidence=RCA
GO:0006862 "nucleotide transport" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015696 "ammonium transport" evidence=RCA
GO:0015802 "basic amino acid transport" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043269 "regulation of ion transport" evidence=RCA
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132816 LHT7 "LYS/HIS transporter 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FKS8LHT1_ARATHNo assigned EC number0.84060.88550.8677yesno
Q9LRB5LHT2_ARATHNo assigned EC number0.76110.91300.9047nono
Q9C733LHTL1_ARATHNo assigned EC number0.76260.89930.8675nono
Q9SR44LHTL2_ARATHNo assigned EC number0.75310.90610.8979nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 1e-107
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 2e-13
PLN03074473 PLN03074, PLN03074, auxin influx permease; Provisi 3e-08
TIGR00837381 TIGR00837, araaP, aromatic amino acid transport pr 2e-04
pfam03222393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 2e-04
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  322 bits (827), Expect = e-107
 Identities = 135/366 (36%), Positives = 199/366 (54%), Gaps = 14/366 (3%)

Query: 38  RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM 97
                W + F+ + A++GAGVLSLPYA  QLGW PG+ +L++  +I+LYTL  +V+  + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 98  VP---GKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLC 154
           V    GKR   Y +LG   FG K G  +++   L+   GVCI Y++  G +L  + +   
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPK-GKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFF 119

Query: 155 KEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQ 214
                 I L YFI+IF  +   LS +PN +A++ +SL AAV SL Y  I   +    GV 
Sbjct: 120 DT--CHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSL-YIVILVLSVAELGVL 176

Query: 215 PDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274
                G         +   F A+G + FA+ GH V+L IQ T+ S P K     M + ++
Sbjct: 177 TAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKS-PSK--FKAMTKVLL 233

Query: 275 VAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAM 334
            A I+V + Y  V L+GY  FGN V+ NILL+L K  WLI +AN  +V+H++ SY + A 
Sbjct: 234 TAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAF 293

Query: 335 PVFDMIETLLVKK----LNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAF 390
           P+  ++E LL +K     +   ++LLR V+R+  V  T  I I+ PF G  L   G  + 
Sbjct: 294 PIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSG 353

Query: 391 APTTYF 396
           AP T+ 
Sbjct: 354 APLTFI 359

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 437
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.94
PRK10483414 tryptophan permease; Provisional 99.94
PRK09664415 tryptophan permease TnaB; Provisional 99.94
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.93
PRK15132403 tyrosine transporter TyrP; Provisional 99.92
PRK13629443 threonine/serine transporter TdcC; Provisional 99.89
TIGR00814397 stp serine transporter. The HAAAP family includes 99.86
PRK10655438 potE putrescine transporter; Provisional 99.57
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.56
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.55
TIGR00909429 2A0306 amino acid transporter. 99.55
PRK10644445 arginine:agmatin antiporter; Provisional 99.55
PRK11021410 putative transporter; Provisional 99.54
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.54
PRK10249458 phenylalanine transporter; Provisional 99.53
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.52
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.51
PRK15049499 L-asparagine permease; Provisional 99.51
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.48
TIGR00930 953 2a30 K-Cl cotransporter. 99.47
TIGR00911501 2A0308 L-type amino acid transporter. 99.47
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.45
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.45
PRK10238456 aromatic amino acid transporter; Provisional 99.43
PRK11387471 S-methylmethionine transporter; Provisional 99.42
PRK10746461 putative transport protein YifK; Provisional 99.4
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.38
PRK10580457 proY putative proline-specific permease; Provision 99.37
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.37
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.36
PRK10836489 lysine transporter; Provisional 99.34
TIGR00913478 2A0310 amino acid permease (yeast). 99.33
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.3
PF03845320 Spore_permease: Spore germination protein; InterPr 99.26
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.25
COG0531466 PotE Amino acid transporters [Amino acid transport 99.22
COG0833541 LysP Amino acid transporters [Amino acid transport 99.17
KOG1286 554 consensus Amino acid transporters [Amino acid tran 99.16
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.12
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.01
PRK15238496 inner membrane transporter YjeM; Provisional 98.84
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.81
KOG3832319 consensus Predicted amino acid transporter [Genera 98.8
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 98.79
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.74
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.59
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.46
COG3949349 Uncharacterized membrane protein [Function unknown 98.36
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.17
PRK11375484 allantoin permease; Provisional 98.17
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.07
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.05
COG0591493 PutP Na+/proline symporter [Amino acid transport a 97.95
PRK12488549 acetate permease; Provisional 97.92
TIGR00813407 sss transporter, SSS family. have different number 97.85
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 97.8
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.59
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.52
PRK09395551 actP acetate permease; Provisional 97.51
COG1457442 CodB Purine-cytosine permease and related proteins 97.5
PRK11017404 codB cytosine permease; Provisional 97.47
PRK15419502 proline:sodium symporter PutP; Provisional 97.46
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.43
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.37
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 97.35
PRK10484523 putative transporter; Provisional 97.24
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.12
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.07
PRK15015 701 carbon starvation protein A; Provisional 96.74
TIGR00835425 agcS amino acid carrier protein. Members of the AG 96.72
KOG1288 945 consensus Amino acid transporters [Amino acid tran 96.65
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.6
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 96.39
COG4147529 DhlC Predicted symporter [General function predict 96.32
COG1966 575 CstA Carbon starvation protein, predicted membrane 96.08
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 95.97
PRK00701439 manganese transport protein MntH; Reviewed 95.93
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 95.63
PF01566358 Nramp: Natural resistance-associated macrophage pr 95.59
KOG2466 572 consensus Uridine permease/thiamine transporter/al 93.82
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 93.35
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 93.27
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 92.05
PRK15433439 branched-chain amino acid transport system 2 carri 91.05
PF00209 523 SNF: Sodium:neurotransmitter symporter family; Int 90.95
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 88.81
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 87.64
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 85.34
COG0733439 Na+-dependent transporters of the SNF family [Gene 83.33
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=8.3e-54  Score=409.81  Aligned_cols=352  Identities=20%  Similarity=0.306  Sum_probs=311.6

Q ss_pred             cCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchh---CCCccccCHHHHHHHH
Q 013718           37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM---VPGKRFDRYHELGQHA  113 (437)
Q Consensus        37 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~---~~~~~~~~y~~l~~~~  113 (437)
                      ++..|..++..|+.|.++|+|+|++|+||+++|++.|.+..+++++++.|+++.+++|.+.   ..+....+|+|.++.+
T Consensus        44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a  123 (449)
T KOG1304|consen   44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA  123 (449)
T ss_pred             CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence            4568999999999999999999999999999999999999999999999999999999652   2223346788888766


Q ss_pred             h----------CccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCc
Q 013718          114 F----------GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNF  183 (437)
Q Consensus       114 ~----------G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l  183 (437)
                      +          |+ ++|.++++.+.++++|.|++|+++++++++++.+...   ...++.+.++.+..++.+|++++|++
T Consensus       124 ~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~---~~~~s~~~~i~~~~~~~lll~~Ir~L  199 (449)
T KOG1304|consen  124 MEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS---PGVLSVRLYILIQLPPLLLLNLIRNL  199 (449)
T ss_pred             HcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC---CCCccHHHHHHHHHHHHHHHHHHHhh
Confidence            4          43 5579999999999999999999999999999998422   24577899999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCC
Q 013718          184 NAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEK  263 (437)
Q Consensus       184 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~  263 (437)
                      +.|+.+|+++.++.++...++.++.+....      +.++.....++.+++..+|+.+|||+|+.++.|++++|    |+
T Consensus       200 k~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~------~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M----k~  269 (449)
T KOG1304|consen  200 KILSPFSLFANVFILVGLAIIMYYLVQDLP------PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM----KK  269 (449)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHhccC------CccccccccchhhhHHHHHHHHHHhccceEEEehhhcc----cC
Confidence            999999999999888877777666554322      11122234458899999999999999999999999999    89


Q ss_pred             CCCcccc-hhhhhHHHHHHHHHHHHHhhhhhcccccchhhhhhCCCCchHHHHHHHHHHHHHHHhhcceeccchHHHHHH
Q 013718          264 PSKGPMW-RGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIET  342 (437)
Q Consensus       264 p~~~~~~-~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~  342 (437)
                      |+++.-+ ++...+|.+++++|+.+|++||++|||++++.+++|+|+ +++.+.+++++++.++++||++++|..+++|+
T Consensus       270 P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~  348 (449)
T KOG1304|consen  270 PQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEP  348 (449)
T ss_pred             hhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHH
Confidence            9865422 788899999999999999999999999999999999998 99999999999999999999999999999999


Q ss_pred             HHhhhcCCCccchhhhhhhHHHHHHHHHHHhhccchhhhhhhhhcchhhhhHhhhcceeee
Q 013718          343 LLVKKLNFSPTRLLRFVVRNLYVASTMFIGITFPFFGGLLGFFGGFAFAPTTYFVSQILPL  403 (437)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~~~G~~~~~~l~~ilP~l~~l  403 (437)
                      .++++.+.+++++..+..|..++++++.+|..+||++.+++++|+++++.+++++|+++++
T Consensus       349 ~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel  409 (449)
T KOG1304|consen  349 GIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIEL  409 (449)
T ss_pred             hHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHH
Confidence            9888777666778889999999999999999999999999999999999999999999999

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query437
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.69
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.58
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.35
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.56
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 97.7
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.1
2a65_A 519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 85.76
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.69  E-value=1e-15  Score=152.96  Aligned_cols=294  Identities=15%  Similarity=0.091  Sum_probs=183.4

Q ss_pred             ccCCCchhhHHHHhhhcccccccchHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHcchhCCCccccCHHHHHHHHhC
Q 013718           36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG  115 (437)
Q Consensus        36 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~f~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~y~~l~~~~~G  115 (437)
                      .+|+.+.++..+..+++++|+|++.+|...++.|- .+++..++.+++.......+.|...+.|+..  +..+..++.+|
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~G   82 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCFG   82 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHSC
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHcC
Confidence            46789999999999999999999999999888885 4788888899999999999999887777654  88899999999


Q ss_pred             ccccchhhHHHHHHHHhHHhhhhHhhhccchHHHHHHHhcCCCCCccchhhhHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 013718          116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV  195 (437)
Q Consensus       116 ~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~i~pl~~~~~l~~l~~~s~~~~~  195 (437)
                      |++| ++......+.......++....++++...++...    ..+....+.+++ ++++-....+..+...+++.+...
T Consensus        83 ~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~in~~g~~~~~~~~~~~~~  156 (445)
T 3l1l_A           83 PFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK----DPWVLTITCVVV-LWIFVLLNIVGPKMITRVQAVATV  156 (445)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG----SHHHHHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             ChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc----ccHHHHHHHHHH-HHHHHHHHHhchHHHHHHHHHHHH
Confidence            9888 8888877777666666666666665554433211    001111111111 112222223456666666655554


Q ss_pred             HHHHHHHHHhhhheeccCCCCccccccccCccchHhHHHHhhhhhhhhcccceeeccccccCCcCCCCCCCcccchhhhh
Q 013718          196 MSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVV  275 (437)
Q Consensus       196 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~i~~i~~~m~~~~k~p~~~~~~~~~~~  275 (437)
                      ..+...++.....+...........+.+ ....++.++..++....|+|.|.+.+....+|+    |||+| +.+|++..
T Consensus       157 ~~i~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip~a~~~  230 (445)
T 3l1l_A          157 LALIPIVGIAVFGWFWFRGETYMAAWNV-SGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATIG  230 (445)
T ss_dssp             HHHHHHHHHHHTTSTTCCCCCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhChhhcccccCc-cCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-cccHHHHH
Confidence            4333222222222222111111111111 112235678899999999999999999999999    88865 67799999


Q ss_pred             HHHHHHHHHHHHHhhhhhcccccch----hhh---hhCCCCchHHHHHHHHHHHHHHHhhcceeccchHHHHHHHHh
Q 013718          276 AYIVVALCYFPVALIGYWMFGNKVE----DNI---LLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLV  345 (437)
Q Consensus       276 ~~~~~~~~y~~~g~~gy~~fg~~~~----~~i---l~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~~~~~~~~~~~~  345 (437)
                      +..++.++|+...+......+.+..    ++.   ..... .++...+..+...+..+.+.-...+...+.+..+-+
T Consensus       231 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~  306 (445)
T 3l1l_A          231 GVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAAD  306 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999988876666653221    111   11111 133444455555555555554444555555555443
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query437
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 86.95
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.95  E-value=12  Score=34.67  Aligned_cols=107  Identities=17%  Similarity=0.149  Sum_probs=58.9

Q ss_pred             CchhhHHHHhhhccccccc-chHHHHHHhcCchhHHHHHHHHHHHHHHH----HHHHHHcchhCCCccccCHHHHHHHHh
Q 013718           40 AKWWYSAFHNVTAMVGAGV-LSLPYAMAQLGWGPGVAILILSWIITLYT----LWQMVEMHEMVPGKRFDRYHELGQHAF  114 (437)
Q Consensus        40 ~s~~~~~~~l~~~~iG~Gi-L~LP~~f~~~G~~~g~i~l~~~~~~~~~t----~~~l~~~~~~~~~~~~~~y~~l~~~~~  114 (437)
                      .|..+-++..++..+|.|- -=.|+-..+-|...-++-.+++.++...-    =..+.+..+ .  .....+..+.....
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~-~--g~i~~~~~i~~~~~   81 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGG-A--QGHGTTPAIFYLLW   81 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-T--TTCCSHHHHHHHHS
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCC-C--CcccHHHHHHHHhc
Confidence            4667888999999999965 55999987777443333333333222222    222232222 1  12347778877766


Q ss_pred             CccccchhhHHHHHHHHhHHhhhhHhhhccchHHHH
Q 013718          115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVH  150 (437)
Q Consensus       115 G~~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~  150 (437)
                      +.+.. ..+.....+.++..++-|.+..+-.+.-..
T Consensus        82 ~~~~~-~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~  116 (509)
T d2a65a1          82 RNRFA-KILGVFGLWIPLVVAIYYVYIESWTLGFAI  116 (509)
T ss_dssp             CSHHH-HHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcch-hHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54333 233444445555555556666555544433