Citrus Sinensis ID: 013721


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
MIISCWMDLVGVAFLCAKTRHKWYRFDHSRSRQQQQHKCTETQTGFQKQTTTQGSFSNMTSSSCCKISPIIPIFVSYLLVLSSSICLVHSSDTGKNLNATNQTTLRPEEELHKLKFIRAHLNKINKPAVKTIQSPDGDIIDCVETHLQPAFDHPKLKGQRPLDPPARPNGHNPSGMITEEFQLWSFSGESCPEGTIPIRRTTEQDVLRATSVGKFGRKKIRRVRRDTNSNGHEHAVGYVTGDQYYGAKASINVWAPRVVNQYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPTSSYNGGQFDISLLIWKDPKHGNWWLEFGSGVLVGYWPSFLFTHLTDHASMVQFGGEIVNSRPSGFHTSTQMGSGHFAAKDLGKHHISEIYKLLIGIIT
cEEEEEEcccccEEEEEEEcccEEEEEccccccccccccccccccccccEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEcEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEEEEEccccccccccccEEEEEEEEcccccccccEEEEEEEccccccccccEEEEEEEccccccccccccccccEEEccccccccccccccccccccEEEEEEEEEcccccccEEEEEccccEEEEccHHHccccccccEEEEEcEEEEccccccccccccccccccccccccccEEEEccEEEEcccc
cEEEEEHHHHHHccccccccccEEEEEcccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEcccccEEEEEccccccccccccHccccccccccccccccccccccccEEEEEccccccccccEEEEEccHHHHHEcHHHHHccccccccccccccccccEEEEEEEcccEEEEEEEEEEEccccccccccccHEEEEEEcccccccccEEEEEEEEcHHHccccccEEEEEEEcccccccccEccccccEEEEcccEEEEEEEcccccccccEEEEEEEEEEccccccEEEEEccccEEEcccHHHHHHHHccccEEEEccEEEcccccccccccccccccccccccccEEEEEEEEEEEcccc
MIISCWMDLVGVAFLCAKtrhkwyrfdhsrsrqqqqhkctetqtgfqkqtttqgsfsnmtssscckispiiPIFVSYLLVLSSSIclvhssdtgknlnatnqttlrpeeELHKLKFIRAHLNkinkpavktiqspdgdiiDCVEthlqpafdhpklkgqrpldpparpnghnpsgmitEEFQlwsfsgescpegtipirrttEQDVLRAtsvgkfgrkKIRRVRrdtnsnghehavgyvtgdqyygakasinvwaprvvnQYEFSLSQMWVIsgsfgddlntieagwqvspelygdnyprfftywttdayqatgCYNLLCSGFVQTNNRIAIgaaisptssynggqfdislliwkdpkhgnwwlefgsgvlvgywpsflfthltdhasmvqfggeivnsrpsgfhtstqmgsghfaAKDLGKHHISEIYKLLIGIIT
MIISCWMDLVGVAFLCAKTRHKWYRFDHsrsrqqqqhkctetqtgfqkqtttqgsfsnMTSSSCCKISPIIPIFVSYLLVLSSSICLVHSsdtgknlnatnqttlrpeEELHKLKFIRAHLNKINKPAVKTIQSPDGDIIDCVETHLQPAFDHPKLKGQRPLDPPARPNGHNPSGMITEEFQLWSFSGESCPEGtipirrtteqdvlratsvgkfgrkkirrvrrdtnsnghehavgyvtgDQYYGAKASINVWAPRVVNQYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPTSSYNGGQFDISLLIWKDPKHGNWWLEFGSGVLVGYWPSFLFTHLTDHASMVQFGGEIVNSRPSGFHTSTQMGSGHFAAKDLGKHHISEIYKLLIGIIT
MIISCWMDLVGVAFLCAKTRHKWYRFDHSRSRQQQQHKCtetqtgfqkqtttqGSFSNMTssscckispiipiFVSYLLVLSSSICLVHSSDTGKNLNATNQTTLRPEEELHKLKFIRAHLNKINKPAVKTIQSPDGDIIDCVETHLQPAFDHPKLKGQRPLDPPARPNGHNPSGMITEEFQLWSFSGESCPEGTIPIRRTTEQDVLRATSVGKFGRKKIRRVRRDTNSNGHEHAVGYVTGDQYYGAKASINVWAPRVVNQYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPTSSYNGGQFDISLLIWKDPKHGNWWLEFGSGVLVGYWPSFLFTHLTDHASMVQFGGEIVNSRPSGFHTSTQMGSGHFAAKDLGKHHISEIYKLLIGIIT
*IISCWMDLVGVAFLCAKTRHKWYRFD***********************************SCCKISPIIPIFVSYLLVLSSSICLVHS********************LHKLKFIRAHLNKINKPAVKTIQSPDGDIIDCVETHLQ*******************************EFQLWSFSGESCPEGTIPIRR****DVLRATSVGKFG***************HEHAVGYVTGDQYYGAKASINVWAPRVVNQYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPTSSYNGGQFDISLLIWKDPKHGNWWLEFGSGVLVGYWPSFLFTHLTDHASMVQFGGEIVN**************GHFAAKDLGKHHISEIYKLLIGII*
MIISCW*DLVGVAFLCAKTRHKWYRFD***********************************SCCKISPIIPIFVSYLLVLSSSICLVHSSDT**************************HLNKINKPAVKTIQSPDGDIIDCVETHLQPAFDHPKLK********************************SCPEGTIPIR************************RRDTNSNGHEHAVGYVTGDQYYGAKASINVWAPRVVNQYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPTSSYNGGQFDISLLIWKDPKHGNWWLEFGSGVLVGYWPSFLFTHLTDHASMVQFGGEIVNSRPS****STQMGSGHFAAKDLGKHHISEIYKLLIGII*
MIISCWMDLVGVAFLCAKTRHKWYRF***********************************SSCCKISPIIPIFVSYLLVLSSSICLVHSSDTGKNLNATNQTTLRPEEELHKLKFIRAHLNKINKPAVKTIQSPDGDIIDCVETHLQPAFDHPKLKGQRPLDPPARPNGHNPSGMITEEFQLWSFSGESCPEGTIPIRRTTEQDVLRATSVGKFGRKKIRRVRRDTNSNGHEHAVGYVTGDQYYGAKASINVWAPRVVNQYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPTSSYNGGQFDISLLIWKDPKHGNWWLEFGSGVLVGYWPSFLFTHLTDHASMVQFGGEIVNSRPSGFHTSTQMGSGHFAAKDLGKHHISEIYKLLIGIIT
MIISCWMDLVGVAFLCAKTRHKWYRFDHS******************************TSSSCCKISPIIPIFVSYLLVLSSSICLVHSSDTGK**********RPEEELHKLKFIRAHLNKINKPAVKTIQSPDGDIIDCVETHLQPAFDHPKLKGQRPLDPPAR**********TEEFQLWSFSGESCPEGTIPIRRTTEQDVLRATSVGKFGRKKIRRVRRDTNSNGHEHAVGYVTGDQYYGAKASINVWAPRVVNQYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPTSSYNGGQFDISLLIWKDPKHGNWWLEFGSGVLVGYWPSFLFTHLTDHASMVQFGGEIVNSRPSGFHTST***SGHFAAKDLGKHHISEIYKLLIGI**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIISCWMDLVGVAFLCAKTRHKWYRFDHSRSRQQQQHKCTETQTGFQKQTTTQGSFSNMTSSSCCKISPIIPIFVSYLLVLSSSICLVHSSDTGKNLNATNQTTLRPEEELHKLKFIRAHLNKINKPAVKTIQSPDGDIIDCVETHLQPAFDHPKLKGQRPLDPPARPNGHNPSGMITEEFQLWSFSGESCPEGTIPIRRTTEQDVLRATSVGKFGRKKIRRVRRDTNSNGHEHAVGYVTGDQYYGAKASINVWAPRVVNQYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPTSSYNGGQFDISLLIWKDPKHGNWWLEFGSGVLVGYWPSFLFTHLTDHASMVQFGGEIVNSRPSGFHTSTQMGSGHFAAKDLGKHHISEIYKLLIGIIT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
224110908466 predicted protein [Populus trichocarpa] 0.931 0.873 0.756 0.0
21389708473 putative carboxyl-terminal proteinase [G 0.938 0.866 0.779 1e-178
224102449416 predicted protein [Populus trichocarpa] 0.816 0.858 0.808 1e-172
147843236443 hypothetical protein VITISV_016799 [Viti 0.848 0.837 0.690 1e-170
356497508471 PREDICTED: uncharacterized protein LOC10 0.933 0.866 0.725 1e-165
449450440419 PREDICTED: uncharacterized protein LOC10 0.823 0.859 0.764 1e-165
449522859419 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.823 0.859 0.764 1e-164
356524024463 PREDICTED: uncharacterized protein LOC10 0.869 0.820 0.753 1e-163
357485777488 Carboxyl-terminal proteinase-like protei 0.887 0.795 0.745 1e-163
356501954417 PREDICTED: uncharacterized protein LOC10 0.814 0.853 0.8 1e-162
>gi|224110908|ref|XP_002315678.1| predicted protein [Populus trichocarpa] gi|222864718|gb|EEF01849.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/423 (75%), Positives = 355/423 (83%), Gaps = 16/423 (3%)

Query: 1   MIISCWMDLVGVAFLCAKTRHKWYRFDHSRSRQQQQHKCTETQTGFQKQTTTQGSFSNMT 60
           M+I CWMD         +TR++   FDH R + Q   +   T T    + T QG+FSNM 
Sbjct: 1   MVIMCWMD--------TRTRNRRGYFDHRRRQHQCTQQTNTTTTADLAKETRQGNFSNMA 52

Query: 61  SSSCCK-ISPIIPIFVSYLLVLSSSICLVHSSDTGKNLNATNQTTLRPEEELHKLKFIRA 119
           SS C K +SPII +F+ +LLV SS+IC V SS+T ++ +ATNQT  RP+EEL KLK IR 
Sbjct: 53  SSWCYKKMSPIISVFLCFLLVASSNICPVFSSET-RSGHATNQT-FRPQEELQKLKIIRE 110

Query: 120 HLNKINKPAVKTIQSPDGDIIDCVETHLQPAFDHPKLKGQRPLDPPARPNGHNPSGMITE 179
            L+KINKPA     SPDGD+IDCV +HLQPAFDHP+LKGQ+PL+PP RP GH+PS M+TE
Sbjct: 111 RLDKINKPA-----SPDGDLIDCVLSHLQPAFDHPQLKGQKPLEPPERPKGHDPSSMVTE 165

Query: 180 EFQLWSFSGESCPEGTIPIRRTTEQDVLRATSVGKFGRKKIRRVRRDTNSNGHEHAVGYV 239
            FQ W  SGESCPEGT+PIRRTTEQD+LRA+SV +FGRK  R VRRDTNSNGHEHAVGYV
Sbjct: 166 NFQSWGLSGESCPEGTVPIRRTTEQDMLRASSVRRFGRKLRRHVRRDTNSNGHEHAVGYV 225

Query: 240 TGDQYYGAKASINVWAPRVVNQYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDNYP 299
           TGDQYYGAKASINVWAPRV NQYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDNYP
Sbjct: 226 TGDQYYGAKASINVWAPRVSNQYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDNYP 285

Query: 300 RFFTYWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPTSSYNGGQFDISLLIWKDPKH 359
           RFFTYWTTDAYQATGCYNLLCSGFVQTN+RIAIGAAISPTSSY+GGQFDISLL+WKDPKH
Sbjct: 286 RFFTYWTTDAYQATGCYNLLCSGFVQTNSRIAIGAAISPTSSYSGGQFDISLLVWKDPKH 345

Query: 360 GNWWLEFGSGVLVGYWPSFLFTHLTDHASMVQFGGEIVNSRPSGFHTSTQMGSGHFAAKD 419
           GNWWLEFG+GVLVGYWPSFLFTHL DHASMVQFGGEIVNSRPSGFHTSTQMGSGHFA + 
Sbjct: 346 GNWWLEFGNGVLVGYWPSFLFTHLRDHASMVQFGGEIVNSRPSGFHTSTQMGSGHFAGEG 405

Query: 420 LGK 422
            GK
Sbjct: 406 FGK 408




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21389708|gb|AAK84952.2| putative carboxyl-terminal proteinase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|224102449|ref|XP_002312681.1| predicted protein [Populus trichocarpa] gi|222852501|gb|EEE90048.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147843236|emb|CAN78442.1| hypothetical protein VITISV_016799 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356497508|ref|XP_003517602.1| PREDICTED: uncharacterized protein LOC100776639 [Glycine max] Back     alignment and taxonomy information
>gi|449450440|ref|XP_004142970.1| PREDICTED: uncharacterized protein LOC101208399 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449522859|ref|XP_004168443.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101225720 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356524024|ref|XP_003530633.1| PREDICTED: uncharacterized protein LOC100792240 [Glycine max] Back     alignment and taxonomy information
>gi|357485777|ref|XP_003613176.1| Carboxyl-terminal proteinase-like protein [Medicago truncatula] gi|355514511|gb|AES96134.1| Carboxyl-terminal proteinase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356501954|ref|XP_003519788.1| PREDICTED: uncharacterized protein LOC100776135 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
TAIR|locus:2019933467 AT1G10750 [Arabidopsis thalian 0.782 0.732 0.762 1.9e-147
TAIR|locus:2026815465 AT1G70550 [Arabidopsis thalian 0.796 0.748 0.747 6e-146
TAIR|locus:2028025409 AT1G23340 "AT1G23340" [Arabido 0.782 0.836 0.728 4.3e-141
TAIR|locus:2170091420 AT5G50150 "AT5G50150" [Arabido 0.787 0.819 0.7 9.5e-137
TAIR|locus:2092870419 AT3G13510 [Arabidopsis thalian 0.702 0.732 0.6 3.6e-105
TAIR|locus:2035666422 AT1G55360 [Arabidopsis thalian 0.697 0.722 0.591 4.2e-102
TAIR|locus:2167121420 AT5G56530 "AT5G56530" [Arabido 0.681 0.709 0.574 3.1e-99
TAIR|locus:2146258430 AT5G18460 [Arabidopsis thalian 0.599 0.609 0.586 1.1e-87
TAIR|locus:2050487445 AT2G44210 [Arabidopsis thalian 0.549 0.539 0.572 6.5e-83
TAIR|locus:2050528403 AT2G44220 [Arabidopsis thalian 0.729 0.791 0.488 7.4e-82
TAIR|locus:2019933 AT1G10750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1440 (512.0 bits), Expect = 1.9e-147, P = 1.9e-147
 Identities = 266/349 (76%), Positives = 298/349 (85%)

Query:    74 FVSYLLVLSSSICLVHSSDTGKNLNATNQTTLRPEEELHKLKFIRAHLNKINKPAVKTIQ 133
             F+S LL+LSSS     SS   +NL+  NQT LRP +EL+KLK I  HL KINKP++KTI 
Sbjct:    68 FLS-LLLLSSSF----SSVLSENLSPRNQT-LRPLDELNKLKAINQHLRKINKPSIKTIH 121

Query:   134 SPDGDIIDCVETHLQPAFDHPKLKGQRPLDPPARPNGHNPSGMITEEFQLWSFSGESCPE 193
             SPDGDIIDCV  H QPAFDHP L+GQ+PLDPP RP GHN  G+  + FQLW   GE+CPE
Sbjct:   122 SPDGDIIDCVLLHHQPAFDHPSLRGQKPLDPPERPRGHNRRGLRPKSFQLWGMEGETCPE 181

Query:   194 GTIPIRRTTEQDVLRATSVGKFGRKKIRRVRRDTNSNGHEHAVGYVTGDQYYGAKASINV 253
             GT+PIRRT E+D+LRA SV  FG KK+R  RRDT+SNGHEHAVGYV+G++YYGAKASINV
Sbjct:   182 GTVPIRRTKEEDILRANSVSSFG-KKLRHYRRDTSSNGHEHAVGYVSGEKYYGAKASINV 240

Query:   254 WAPRVVNQYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQAT 313
             WAP+V NQYEFSLSQ+W+ISGSFG+DLNTIEAGWQVSPELYGDNYPRFFTYWT DAYQAT
Sbjct:   241 WAPQVQNQYEFSLSQIWIISGSFGNDLNTIEAGWQVSPELYGDNYPRFFTYWTNDAYQAT 300

Query:   314 GCYNLLCSGFVQTNNRIAIGAAISPTSSYNGGQFDISLLIWKDPKHGNWWLEFGSGVLVG 373
             GCYNLLCSGFVQTN+ IAIGAAISP+SSY GGQFDI+LLIWKDPKHGNWWLEFGSG+LVG
Sbjct:   301 GCYNLLCSGFVQTNSEIAIGAAISPSSSYKGGQFDITLLIWKDPKHGNWWLEFGSGILVG 360

Query:   374 YWPSFLFTHLTDHASMVQFGGEIVNSRPSGFHTSTQMGSGHFAAKDLGK 422
             YWPSFLFTHL +HASMVQ+GGEIVNS P G HTSTQMGSGHFA +   K
Sbjct:   361 YWPSFLFTHLKEHASMVQYGGEIVNSSPFGAHTSTQMGSGHFAEEGFTK 409




GO:0005739 "mitochondrion" evidence=ISM
TAIR|locus:2026815 AT1G70550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028025 AT1G23340 "AT1G23340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170091 AT5G50150 "AT5G50150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092870 AT3G13510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035666 AT1G55360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167121 AT5G56530 "AT5G56530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146258 AT5G18460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050487 AT2G44210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050528 AT2G44220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
pfam03080230 pfam03080, DUF239, Domain of unknown function (DUF 1e-104
pfam14365117 pfam14365, DUF4409, Domain of unknown function (DU 2e-45
>gnl|CDD|217358 pfam03080, DUF239, Domain of unknown function (DUF239) Back     alignment and domain information
 Score =  309 bits (793), Expect = e-104
 Identities = 108/179 (60%), Positives = 137/179 (76%), Gaps = 3/179 (1%)

Query: 244 YYGAKASINVWAPRVVNQYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDNYPRFFT 303
           YYGA+A+INV+ P+V N  +FSLSQ+W+++G    DLN+I+AGWQV+P LYGDN  R FT
Sbjct: 1   YYGAQATINVYNPKVQNPNQFSLSQIWIVNGPENGDLNSIQAGWQVNPSLYGDNRTRLFT 60

Query: 304 YWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPTSSYNGGQFDISLLIWKDPKHGNWW 363
           YWT D Y  TGCYNLLC GFVQ +++IA+G AISP S Y G Q+DI+LLIWKDPK GNWW
Sbjct: 61  YWT-DGYNKTGCYNLLCPGFVQVSSKIALGGAISPVSVYGGKQYDITLLIWKDPKTGNWW 119

Query: 364 LEFGSGVLVGYWPSFLFTHLTDHASMVQFGGEIVNSRPSGFHTSTQMGSGHFAAKDLGK 422
           L +G+  ++GYWPS LFTHL+  A+MV++GGE+ +  P G H S  MGSGHF  +  GK
Sbjct: 120 LTYGNNTVIGYWPSSLFTHLSSGATMVEWGGEVYS--PPGGHPSPPMGSGHFPEEGFGK 176


This is a family of plant and bacterial proteins, a small number of which are putative carboxy-terminal peptidases. Length = 230

>gnl|CDD|206533 pfam14365, DUF4409, Domain of unknown function (DUF4409) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 437
PF03080229 DUF239: Domain of unknown function (DUF239); Inter 100.0
PF14365117 DUF4409: Domain of unknown function (DUF4409) 100.0
>PF03080 DUF239: Domain of unknown function (DUF239); InterPro: IPR004314 This is a family of plant proteins, a small number of which are putative peptidases (see for example Q9XIN9 from SWISSPROT) Back     alignment and domain information
Probab=100.00  E-value=7.8e-73  Score=543.34  Aligned_cols=188  Identities=55%  Similarity=1.059  Sum_probs=180.5

Q ss_pred             eeeeEEEEEeeccccccCCccceeeeeeccCcCCCCccEEEEeeeecccccCCCCcEEEEEEeeCCccccceeccCCCee
Q 013721          244 YYGAKASINVWAPRVVNQYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDNYPRFFTYWTTDAYQATGCYNLLCSGF  323 (437)
Q Consensus       244 yyGa~AtinVw~P~V~~~~qfSlsqIwv~sG~~~~~lnsIeaGW~V~P~lYGD~~~rlF~yWT~D~y~~tGCyNl~CpGF  323 (437)
                      |||++|+||||+|+|+..+|||++||||.+|...+.+|+|||||+|+|+||||++||||+|||+|+|++|||||++||||
T Consensus         1 y~G~~a~i~v~~p~v~~~~q~S~~~i~i~~g~~~~~~~~i~~GW~V~P~lygd~~~~lf~~wt~d~~~~tgCyN~~CpGF   80 (229)
T PF03080_consen    1 YYGARATISVWNPKVQQPDQFSLSQIWISNGSDDDSLNSIEAGWQVYPSLYGDSRTRLFVYWTADGYQKTGCYNLDCPGF   80 (229)
T ss_pred             CeeeEEEEECcCCccCCccceeheeEEEEecCCCCCCcEEEEeeeccccccCCCceEEEEEEEccCCCCcceeCCCCCcE
Confidence            79999999999999998779999999999997557799999999999999999999999999999999999999999999


Q ss_pred             EEecCccccCcccccccccCCceeEEEEEEecCCCCcceEEEeCCceeeeeechhhcccccCCccEEEEceEEEcCCCCC
Q 013721          324 VQTNNRIAIGAAISPTSSYNGGQFDISLLIWKDPKHGNWWLEFGSGVLVGYWPSFLFTHLTDHASMVQFGGEIVNSRPSG  403 (437)
Q Consensus       324 VQvs~~i~lG~~i~pvS~~~G~Q~~i~l~I~KDp~tGnWWL~~g~~~~IGYWP~sLFt~L~~~A~~V~wGGeV~~~~~~~  403 (437)
                      |||+++|+||++|+|+|+++|.|++|.|+|+||+++|||||+++ ++.|||||++||++|+++|+.|+|||||++.+  +
T Consensus        81 Vq~s~~i~~G~~~~~~S~~gG~q~~i~~~i~kD~~~gnWWL~~~-~~~IGYwP~sLF~~l~~~A~~v~wGGeV~~~~--~  157 (229)
T PF03080_consen   81 VQVSSSIALGAAISPVSTYGGKQYEITLSIFKDPKSGNWWLYYG-GEPIGYWPKSLFTSLADGATEVEWGGEVYSPP--G  157 (229)
T ss_pred             EEeCCccccceeeCCCccCCCceEEEEEEEEecCCCccEEEEEe-cceeeeehHHhhhhhhcCceEEEEEEEEeCCC--C
Confidence            99999999999999999999999999999999999999999998 57999999999999999999999999999865  4


Q ss_pred             CCCCCCCCCCccCCCCCCceEEEecceeeec
Q 013721          404 FHTSTQMGSGHFAAKDLGKHHISEIYKLLIG  434 (437)
Q Consensus       404 ~~tsppMGSG~fP~eG~~kAAY~r~i~v~~~  434 (437)
                      .|++|||||||||++|+++|||||+|+|++.
T Consensus       158 ~~~sppMGSG~fp~~g~~~aAy~~~i~~~d~  188 (229)
T PF03080_consen  158 RHTSPPMGSGHFPSEGFGKAAYFRNIQVVDS  188 (229)
T ss_pred             CCCCCCccCCcCCCCCCCccEEEEEEEEEcC
Confidence            5799999999999999999999999999875



However, the structure of the protein PDB3:3eu8 has an alpha-alpha toroid fold and is similar to a glucoamylase, PDB:1ayx. Such glucoamylases are involved in breaking down complex sugars (e.g. starch). The biologically relevant state is likely to be monomeric. The putative active site is located at the centre of the toroid with a well defined large cavity. Further structural comparisons also show relationships with other glycohydrolases.

>PF14365 DUF4409: Domain of unknown function (DUF4409) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00