Citrus Sinensis ID: 013736

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKVLFIFPLSDSCTYLFLI
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccEEEEHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccEEcccccccccccccHHHHHHHcccccHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
cccEEEEcccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcHHccccEEEEc
msgilfhkyggedldsyypirpecqadvpkvRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIqrggihpsikGLVWEFLlgcydpnstfeERNQIRQQRRQQYAAWKTECqnivpiigsgkFITAAivtddgqslqdsnrdsldqgwhvdgaiSDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWvdndigyvqgmndICSPMIVLLENEADAFWCFEHTMRRLRENFrtntgmigvQSQLSTLSQIIRTIDPKLHqhledldggEYLFAFRMLMVLFRREFSFVDALYLWELMWAMeynpnifslyesnsstsdgrqvndkqLKQCGkferknvktglpdktsALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKVLFIfplsdsctylfli
msgilfhkyggedldsyYPIRPECQADVPKVRFKARAGKTLSARRWHaafsedghldIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYesetnqaklwDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKferknvktglpdktsaLSVFLVASVLETknkkllreakglddVVKILADITGNLDAKKACNEALKIQKKYLSKVLFifplsdsctylfli
MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEErnqirqqrrqqYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKVLFIFPLSDSCTYLFLI
***ILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFE****I**QRRQQYAAWKTECQNIVPIIGSGKFITAAIVTD*************DQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLY***********************************TSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKVLFIFPLSDSCTYLFL*
*********************************************WHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQD***************ISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSD***************************TSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKVLFIFPLSDSCTYLFLI
MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEER************AWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYES***********DKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKVLFIFPLSDSCTYLFLI
**G**FHKYGGEDLDSYYPIRPECQADVPK*******GKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQS********************DKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKVLFIFPLSDSCTYLFLI
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MSGILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSKVLFIFPLSDSCTYLFLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query437 2.2.26 [Sep-21-2011]
Q9CXF4671 TBC1 domain family member yes no 0.709 0.461 0.284 2e-37
Q8TC07691 TBC1 domain family member yes no 0.542 0.342 0.340 2e-36
Q9UUH7743 GTPase-activating protein yes no 0.606 0.356 0.302 1e-27
P09379730 GTPase-activating protein yes no 0.553 0.331 0.290 4e-27
Q6FWI1745 GTPase-activating protein yes no 0.734 0.430 0.248 9e-27
Q8BYH7645 TBC1 domain family member no no 0.581 0.393 0.293 3e-26
Q9HA65648 TBC1 domain family member no no 0.581 0.391 0.304 8e-26
Q6BU76757 GTPase-activating protein yes no 0.597 0.344 0.268 2e-25
A1A5B6 742 TBC1 domain family member no no 0.528 0.311 0.266 5e-25
Q3MII6 688 TBC1 domain family member no no 0.528 0.335 0.266 7e-25
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1 Back     alignment and function desciption
 Score =  156 bits (395), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 191/401 (47%), Gaps = 91/401 (22%)

Query: 39  KTLSARRWHAAFSEDGHL-DIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQ 97
           + +S   W+ +   +G L  +  + ++I RGG+  S++   W+FLLG +  +ST EER Q
Sbjct: 298 EPVSLEEWNKSLDPEGRLVAVESMKQKIFRGGLSHSLRKQAWKFLLGYFPWDSTKEERTQ 357

Query: 98  IRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAIS 157
           +++Q+  +Y   K + +++                 + Q  ++S              + 
Sbjct: 358 LQKQKTDEYFRMKLQWKSV----------------SEAQEKRNSR-------------LR 388

Query: 158 DKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAK--LWDVLAIYSWVDNDIGYVQGMN 215
           D + L        I  DV RTDR+  FYE + N     L D+L  Y   D D+GYVQGM+
Sbjct: 389 DYRSL--------IEKDVNRTDRTNKFYEGQDNPGLILLHDILMTYCMYDFDLGYVQGMS 440

Query: 216 DICSPMIVLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQ 275
           D+ SP++ ++ENE DAFWCF   M ++ +NF     M G+++QL  LS ++R +D     
Sbjct: 441 DLLSPLLYVMENEVDAFWCFASYMDQMHQNFEEQ--MQGMKTQLIQLSTLLRLLDSGFCS 498

Query: 276 HLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGR 335
           +LE  D G   F FR L++ F+REFSF+D L LWE+MW                      
Sbjct: 499 YLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMW---------------------- 536

Query: 336 QVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILA 395
                              T LP K     + L  ++LE++ ++++ +  G ++++K + 
Sbjct: 537 -------------------TELPCKN--FHLLLCCAILESEKQQIMAKHYGFNEILKHIN 575

Query: 396 DITGNLDAKKA-CN-EALKIQ----KKYLSKVLFIFPLSDS 430
           +++  +D +   C  EA+ +Q    K+    V  I  L DS
Sbjct: 576 ELSMKIDVEDILCKAEAISLQMAQCKELPQAVCEILGLQDS 616
Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6.
Mus musculus (taxid: 10090)
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 Back     alignment and function description
>sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1 Back     alignment and function description
>sp|P09379|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q6FWI1|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 Back     alignment and function description
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2 Back     alignment and function description
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2 Back     alignment and function description
>sp|Q6BU76|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|A1A5B6|TBC25_MOUSE TBC1 domain family member 25 OS=Mus musculus GN=Tbc1d25 PE=1 SV=1 Back     alignment and function description
>sp|Q3MII6|TBC25_HUMAN TBC1 domain family member 25 OS=Homo sapiens GN=TBC1D25 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
297744173486 unnamed protein product [Vitis vinifera] 0.958 0.862 0.758 0.0
359480030451 PREDICTED: TBC1 domain family member 25- 0.963 0.933 0.733 0.0
224082860418 predicted protein [Populus trichocarpa] 0.935 0.978 0.733 0.0
255577934421 conserved hypothetical protein [Ricinus 0.924 0.959 0.748 0.0
297803220424 RabGAP/TBC domain-containing protein [Ar 0.942 0.971 0.702 1e-178
42567218424 RabGAP/TBC domain-containing protein [Ar 0.942 0.971 0.702 1e-177
356536848424 PREDICTED: TBC1 domain family member 15- 0.938 0.966 0.703 1e-175
356548075413 PREDICTED: TBC1 domain family member 15- 0.922 0.975 0.706 1e-175
42569183425 RabGAP/TBC domain-containing protein [Ar 0.931 0.957 0.684 1e-173
449463220418 PREDICTED: LOW QUALITY PROTEIN: TBC1 dom 0.897 0.937 0.687 1e-170
>gi|297744173|emb|CBI37143.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/422 (75%), Positives = 361/422 (85%), Gaps = 3/422 (0%)

Query: 3   GILFHKYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVL 62
           GIL       ++DS+Y IRPECQ+DVPK+RFK RAGKTLSARRWHAAFS+DGHLDI KVL
Sbjct: 62  GILMKNSANGEVDSFYAIRPECQSDVPKIRFKPRAGKTLSARRWHAAFSQDGHLDIEKVL 121

Query: 63  RRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGS 122
           RRIQRGG+HPSIKG+VWEFLLGC+DPNSTF+ERN++RQQRRQQY A K ECQ + P+IGS
Sbjct: 122 RRIQRGGVHPSIKGVVWEFLLGCFDPNSTFDERNELRQQRRQQYGALKAECQKMAPVIGS 181

Query: 123 GKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSL 182
           GKFIT  IVT D  S        LD G HVD A+ DKKV+QW L LHQIGLDVVRTDR+L
Sbjct: 182 GKFITTPIVTVDATSTPSPLDSPLDDGGHVDDAVPDKKVIQWKLMLHQIGLDVVRTDRTL 241

Query: 183 VFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRL 242
           VFYESE NQAKLWDVLA+Y+W+DNDIGY QGMNDICSPM++L+ENEADAFWCFE  MRRL
Sbjct: 242 VFYESEANQAKLWDVLAVYAWMDNDIGYCQGMNDICSPMVILIENEADAFWCFERAMRRL 301

Query: 243 RENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSF 302
           RENFR +T  IGVQSQL TLS+II+ +DP+LHQHLEDLDGGEYLFAFRMLMVLFRREFSF
Sbjct: 302 RENFRVSTNSIGVQSQLGTLSEIIKAVDPQLHQHLEDLDGGEYLFAFRMLMVLFRREFSF 361

Query: 303 VDALYLWELMWAMEYNPNIFSLYESNSSTSD---GRQVNDKQLKQCGKFERKNVKTGLPD 359
           VDALYLWELMWAMEYNPNIFS YE +S+++D    +  N K LK+CGKFERKNVKTG  +
Sbjct: 362 VDALYLWELMWAMEYNPNIFSSYEESSASADKSSTQNTNGKMLKKCGKFERKNVKTGYKN 421

Query: 360 KTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLS 419
           + S+L+VFLVASVL TKNK+ L+EAKGLDDVVKIL DITGNLDAKKACNEALK+ KKYLS
Sbjct: 422 QHSSLAVFLVASVLATKNKRFLKEAKGLDDVVKILGDITGNLDAKKACNEALKLHKKYLS 481

Query: 420 KV 421
           K 
Sbjct: 482 KA 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359480030|ref|XP_002272358.2| PREDICTED: TBC1 domain family member 25-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224082860|ref|XP_002306868.1| predicted protein [Populus trichocarpa] gi|222856317|gb|EEE93864.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255577934|ref|XP_002529839.1| conserved hypothetical protein [Ricinus communis] gi|223530667|gb|EEF32540.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297803220|ref|XP_002869494.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297315330|gb|EFH45753.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42567218|ref|NP_194584.3| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|119935837|gb|ABM06008.1| At4g28550 [Arabidopsis thaliana] gi|332660104|gb|AEE85504.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356536848|ref|XP_003536945.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|356548075|ref|XP_003542429.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|42569183|ref|NP_179634.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|238479300|ref|NP_001154525.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|330251913|gb|AEC07007.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|330251914|gb|AEC07008.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449463220|ref|XP_004149332.1| PREDICTED: LOW QUALITY PROTEIN: TBC1 domain family member 15-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
TAIR|locus:2121353424 AT4G28550 [Arabidopsis thalian 0.940 0.969 0.690 4.3e-157
TAIR|locus:2038922425 AT2G20440 [Arabidopsis thalian 0.938 0.964 0.671 1.7e-155
TAIR|locus:2136442436 AT4G27100 [Arabidopsis thalian 0.947 0.949 0.573 5.4e-134
TAIR|locus:2160145432 AT5G54780 [Arabidopsis thalian 0.933 0.944 0.589 2.4e-131
TAIR|locus:2058228 745 AT2G43490 [Arabidopsis thalian 0.395 0.232 0.477 6.9e-63
TAIR|locus:2097573720 AT3G59570 [Arabidopsis thalian 0.453 0.275 0.436 2.8e-62
UNIPROTKB|A8K8E1445 TBC1D15 "TBC1 domain family, m 0.315 0.310 0.464 5.4e-42
MGI|MGI:1913937671 Tbc1d15 "TBC1 domain family, m 0.315 0.205 0.464 5.8e-41
UNIPROTKB|F1LPD8670 Tbc1d15 "Protein Tbc1d15" [Rat 0.315 0.205 0.464 7.3e-41
UNIPROTKB|J9NYJ6674 TBC1D15 "Uncharacterized prote 0.315 0.204 0.464 3.2e-40
TAIR|locus:2121353 AT4G28550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1531 (544.0 bits), Expect = 4.3e-157, P = 4.3e-157
 Identities = 285/413 (69%), Positives = 342/413 (82%)

Query:     8 KYGGEDLDSYYPIRPECQADVPKVRFKARAGKTLSARRWHAAFSEDGHLDIAKVLRRIQR 67
             K GGEDL  +YP+R EC ADVP+ RFK+RAGKTLSAR+WHAAF+ DGHLD+ +VLRRIQR
Sbjct:     9 KSGGEDLQGFYPVREECVADVPRTRFKSRAGKTLSARKWHAAFTGDGHLDMERVLRRIQR 68

Query:    68 GGIHPSIKGLVWEFLLGCYDPNSTFEEXXXXXXXXXXXYAAWKTECQNIVPIIGSGKFIT 127
             GGIHPSIKG VWEFLLG YDP+STFEE           Y AWK EC+N+VP++GSGKF+T
Sbjct:    69 GGIHPSIKGEVWEFLLGAYDPDSTFEERNKLRNHRREQYYAWKEECKNMVPLVGSGKFVT 128

Query:   128 AAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYES 187
              A+V +DGQ L++S+ D+  Q W V  AI+DK+VLQWML L QIGLDVVRTDR L FYES
Sbjct:   129 MAVVAEDGQPLEESSVDN--QEWVVKTAITDKRVLQWMLVLSQIGLDVVRTDRYLCFYES 186

Query:   188 ETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLENEADAFWCFEHTMRRLRENFR 247
             E+NQA+LWD+L+IY+W++ DIGYVQGMNDICSPMI+LLE+EADAFWCFE  MRRLRENFR
Sbjct:   187 ESNQARLWDILSIYTWLNPDIGYVQGMNDICSPMIILLEDEADAFWCFERAMRRLRENFR 246

Query:   248 TNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALY 307
             T    +GVQ+QL  LSQ+I+T+DP+LHQHLEDLDGGEYLFA RMLMVLFRREFSF+DALY
Sbjct:   247 TTATSMGVQTQLGMLSQVIKTVDPRLHQHLEDLDGGEYLFAIRMLMVLFRREFSFLDALY 306

Query:   308 LWELMWAMEYNPNIFSLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVF 367
             LWELMWAMEYNPN F+ YE   + ++    + + LKQ GKFERK +K+G  ++ + L+VF
Sbjct:   307 LWELMWAMEYNPNKFASYEEPQNMNNSSGQDPRLLKQYGKFERKYIKSGQNEQHNTLAVF 366

Query:   368 LVASVLETKNKKLLREAKGLDDVVKILADITGNLDAKKACNEALKIQKKYLSK 420
             +VASVLETKNK+LL+EAKGLDDVV+IL  I GNLDA+KAC EALKI +K+L K
Sbjct:   367 VVASVLETKNKRLLKEAKGLDDVVQILGGIAGNLDARKACKEALKIHEKFLKK 419
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
TAIR|locus:2038922 AT2G20440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136442 AT4G27100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160145 AT5G54780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058228 AT2G43490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097573 AT3G59570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A8K8E1 TBC1D15 "TBC1 domain family, member 15, isoform CRA_d" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1913937 Tbc1d15 "TBC1 domain family, member 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1LPD8 Tbc1d15 "Protein Tbc1d15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|J9NYJ6 TBC1D15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_V001417
hypothetical protein (418 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 2e-37
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 2e-37
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 5e-29
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score =  135 bits (342), Expect = 2e-37
 Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 4/157 (2%)

Query: 168 LHQIGLDVVRTDRSLVFYESETN--QAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLL 225
           +HQI  D+ RT     F++ +    Q  L  VL  Y+  + ++GY QGMN + +P+++++
Sbjct: 47  VHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVM 106

Query: 226 ENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEY 285
           E+E DAFWC    M R   NF     M G+Q  L  L ++++  DP L++HL+DL     
Sbjct: 107 EDEEDAFWCLVKLMERYGPNF-YLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLGITPS 165

Query: 286 LFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIF 322
           L+A R  + LF RE      L +W++++  E +  +F
Sbjct: 166 LYALRWFLTLFARELPLEIVLRIWDVLF-AEGSDFLF 201

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 437
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG2224781 consensus Uncharacterized conserved protein, conta 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG2223586 consensus Uncharacterized conserved protein, conta 100.0
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.97
KOG1093 725 consensus Predicted protein kinase (contains TBC a 99.97
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.97
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.96
KOG2595395 consensus Predicted GTPase activator protein [Sign 99.96
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.95
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.91
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.81
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.64
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.55
KOG1648813 consensus Uncharacterized conserved protein, conta 99.33
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 98.75
PF149611296 BROMI: Broad-minded protein 97.03
KOG2224781 consensus Uncharacterized conserved protein, conta 82.63
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=6.9e-46  Score=345.11  Aligned_cols=310  Identities=25%  Similarity=0.440  Sum_probs=255.6

Q ss_pred             HHHHhhcc-CCCccHHHHHHHHHhCCCC--CCcHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 013736           45 RWHAAFSE-DGHLDIAKVLRRIQRGGIH--PSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIG  121 (437)
Q Consensus        45 ~W~~~l~~-~~~i~~~kl~k~l~~~GIp--~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~  121 (437)
                      ..++.+.. +..+|..+ ++..+..|+|  ..+|+.+|+++||++|++.+.  |...+.+.|..|..+.++..   ..+|
T Consensus        11 ~~edvl~~~~~~id~ke-lr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~--w~s~La~~R~~Y~q~i~e~v---~epg   84 (370)
T KOG4567|consen   11 SIEDVLNPADDTIDLKE-LRKLCFYGVPDDASLRPLVWKLLLGYLPPERSK--WTSFLAKKRSLYKQFIEEIV---DEPG   84 (370)
T ss_pred             hHHHhhccccchhhHHH-HHHHhhcCCCCccchhHhHHHHHHhhcChhhhh--hHHHHHHHHHHHHHHHHHhc---cCcc
Confidence            44455554 33478888 7777778999  799999999999999999975  45888999999999988752   2333


Q ss_pred             CCccccccccccCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhcccccCCCCcCCCChh------------
Q 013736          122 SGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESET------------  189 (437)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~------------  189 (437)
                      ..+.. .. ........++|++..+.+.|+        ...+..+.+.||++||.||.|+..+|+...            
T Consensus        85 ~~~~~-~~-v~~~D~~~dhPls~~~~sdwn--------~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~  154 (370)
T KOG4567|consen   85 KKDNS-KK-VDSNDTDEDHPLSLGPTSDWN--------TFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRR  154 (370)
T ss_pred             ccccc-cc-cccCcccccCCCCCCchhhHH--------HHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHh
Confidence            22111 11 122224566788777777763        233344679999999999999999886521            


Q ss_pred             ---------------hHHHHHHHHHHHhHhcCCCcccCChhhHHHHHHHhcc----------CHHHHHHHHHHHHhhccc
Q 013736          190 ---------------NQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMIVLLE----------NEADAFWCFEHTMRRLRE  244 (437)
Q Consensus       190 ---------------~~~~L~~IL~~y~~~~p~igY~QGm~~Iaa~ll~~~~----------~E~~aF~~f~~l~~~~~~  244 (437)
                                     ......|||..||..||.+||+||||+|+||+++++.          .|+|||+||+.||..+++
T Consensus       155 ~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirD  234 (370)
T KOG4567|consen  155 RINASQEAGRNRLGLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEIRD  234 (370)
T ss_pred             hhhhhhHhhhcccchhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHHHH
Confidence                           1233578999999999999999999999999999984          389999999999999999


Q ss_pred             CcccC--CchhhHHHHHHHHHHHHHHHCHHHHHHHHhCCCCccchhhhHHHHhccccCChhhHHHHHHHHhcccCCCCch
Q 013736          245 NFRTN--TGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIF  322 (437)
Q Consensus       245 ~~~~~--~~~~~~~~~~~~l~~lL~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~vlriWD~~l~~~~~~~~~  322 (437)
                      +|...  .+.-|++..+..+..+|+.+|-+||.||+..+|.|..|+++|+.+|++.+||+++++||||.+++....    
T Consensus       235 nf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r----  310 (370)
T KOG4567|consen  235 NFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR----  310 (370)
T ss_pred             HHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh----
Confidence            98753  455588888999999999999999999999999999999999999999999999999999999987543    


Q ss_pred             hhhcccCCCCCCCccchhhhhhhchhhhhccccCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCCC
Q 013736          323 SLYESNSSTSDGRQVNDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNLD  402 (437)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ail~~~~~~ll~~~~~~~~i~~~l~~l~~~~d  402 (437)
                                                             .+|++++|+|+|...|+.||+.  ||+.-+++|++.| ..|
T Consensus       311 ---------------------------------------fd~Ll~iCcsmlil~Re~il~~--DF~~nmkLLQ~yp-~td  348 (370)
T KOG4567|consen  311 ---------------------------------------FDFLLYICCSMLILVRERILEG--DFTVNMKLLQNYP-TTD  348 (370)
T ss_pred             ---------------------------------------hHHHHHHHHHHHHHHHHHHHhc--chHHHHHHHhcCC-CCC
Confidence                                                   4589999999999999999985  9999999999999 889


Q ss_pred             HHHHHHHHHHHHHH
Q 013736          403 AKKACNEALKIQKK  416 (437)
Q Consensus       403 ~~~ll~~A~~l~~~  416 (437)
                      +..+++.|-.|..+
T Consensus       349 i~~~l~~A~~Lr~~  362 (370)
T KOG4567|consen  349 ISKMLAVADSLRDK  362 (370)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999999854

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 3e-13
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 2e-12
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 8e-11
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 1e-08
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 2e-08
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 9e-08
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 1e-04
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 6e-04
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure 
Iteration: 1

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 30/170 (17%)
Query: 169 HQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMI------ 222
           HQI +D+ RT+  +  Y+ ++ Q  L  +L +++      GYVQG+ND+ +P        
Sbjct: 108 HQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTE 167
Query: 223 ----------------------VLLENEADAFWCFEHTMRRLRENFRTNTGMIGVQSQLS 260
                                  + + EAD FWC    + ++ +N+    G  G+  Q+ 
Sbjct: 168 YLPPSQIDDVKIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH--GQPGILRQVK 225
Query: 261 TLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWE 310
            LSQ+++ ID  L+ H ++       FAFR +  L  REF     + +W+
Sbjct: 226 NLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWD 275
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 4e-65
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 1e-52
2qq8_A334 TBC1 domain family member 14; structural genomics 3e-26
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 7e-25
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 3e-23
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 2e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
 Score =  213 bits (543), Expect = 4e-65
 Identities = 63/317 (19%), Positives = 117/317 (36%), Gaps = 79/317 (24%)

Query: 39  KTLSAR--RWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERN 96
            ++  R  ++     +   ++    LR+I   GI    + +VW+ L+G    N+    + 
Sbjct: 2   NSIIQRISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTK--RQE 58

Query: 97  QIRQQRRQQYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAI 156
              Q++R++Y                                         +    D   
Sbjct: 59  GFLQRKRKEYRDSL-------------------------------------KHTFSDQHS 81

Query: 157 SDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMND 216
            D          HQI +D+ RT+  +  Y+ ++ Q  L  +L +++      GYVQG+ND
Sbjct: 82  RDIPTW------HQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGIND 135

Query: 217 ICSPMIVLL----------------------------ENEADAFWCFEHTMRRLRENFRT 248
           + +P                                 + EAD FWC    + ++ +N+  
Sbjct: 136 LVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH 195

Query: 249 NTGMIGVQSQLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYL 308
             G  G+  Q+  LSQ+++ ID  L+ H ++       FAFR +  L  REF     + +
Sbjct: 196 --GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRM 253

Query: 309 WELMWAMEYNPNIFSLY 325
           W+   + E +  + S Y
Sbjct: 254 WDTYLS-ETSQEVTSSY 269
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query437
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
Probab=100.00  E-value=7.7e-52  Score=412.63  Aligned_cols=289  Identities=22%  Similarity=0.414  Sum_probs=248.1

Q ss_pred             cHHHHHHhhccCCCccHHHHHHHHHhCCCCCCcHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 013736           42 SARRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIG  121 (437)
Q Consensus        42 ~~~~W~~~l~~~~~i~~~kl~k~l~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~  121 (437)
                      ..++|.+++.+. .+|.++ ++.++++|||+.+|+.||++++|++|.+.  ++|....+++++.|.++++++.....   
T Consensus        25 r~~kw~~~l~~~-~~d~~~-Lr~l~~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~---   97 (345)
T 2qfz_A           25 RLDKFKQLLAGP-NTDLEE-LRRLSWSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRN---   97 (345)
T ss_dssp             HHHHHHHHHHCS-BCCHHH-HHHHHTTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHcCC-CCCHHH-HHHHHHCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCC---
Confidence            457999999764 478888 56677899999999999999999998876  46678888899999999998643100   


Q ss_pred             CCccccccccccCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhcccccCCCCcCCCChhhHHHHHHHHHHH
Q 013736          122 SGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIY  201 (437)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~~IL~~y  201 (437)
                                                          ++   ...+..+||++||.||+|+ ++|+.+.+++.|.|||.+|
T Consensus        98 ------------------------------------~~---~~~~~~~~I~~Dv~RT~p~-~~F~~~~~~~~L~rIL~~y  137 (345)
T 2qfz_A           98 ------------------------------------DE---VHQDTYRQIHIDIPRMSPE-ALILQPKVTEIFERILFIW  137 (345)
T ss_dssp             ------------------------------------------CHHHHHHHHHHGGGCSCH-HHHTSHHHHHHHHHHHHHH
T ss_pred             ------------------------------------cc---chHHHHHHHHHhCcccCCc-cccCCchHHHHHHHHHHHH
Confidence                                                00   0114578999999999999 9999999999999999999


Q ss_pred             hHhcCCCcccCChhhHHHHHHHhcc------------------------CHHHHHHHHHHHHhhcccCcccCCchhhHHH
Q 013736          202 SWVDNDIGYVQGMNDICSPMIVLLE------------------------NEADAFWCFEHTMRRLRENFRTNTGMIGVQS  257 (437)
Q Consensus       202 ~~~~p~igY~QGm~~Iaa~ll~~~~------------------------~E~~aF~~f~~l~~~~~~~~~~~~~~~~~~~  257 (437)
                      +.+||++|||||||+|||+|++++.                        +|++|||||+++|+++.+.|.  .+++|+..
T Consensus       138 a~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~--~~~~~i~~  215 (345)
T 2qfz_A          138 AIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYT--FAQPGIQM  215 (345)
T ss_dssp             HHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSS--TTCHHHHH
T ss_pred             HHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHccccccc--cCcHHHHH
Confidence            9999999999999999999998874                        399999999999999877765  35679999


Q ss_pred             HHHHHHHHHHHHCHHHHHHHHhCCCCccchhhhHHHHhccccCChhhHHHHHHHHhcccCCCCchhhhcccCCCCCCCcc
Q 013736          258 QLSTLSQIIRTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSFVDALYLWELMWAMEYNPNIFSLYESNSSTSDGRQV  337 (437)
Q Consensus       258 ~~~~l~~lL~~~~P~L~~hL~~~~i~~~~~~~~WfltlF~~~lp~~~vlriWD~~l~~~~~~~~~~~~~~~~~~~~~~~~  337 (437)
                      .+..++.+|+.++|+||+||.+.++++.+|+++||+|||++++|++.++||||.+|++|...                  
T Consensus       216 ~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~------------------  277 (345)
T 2qfz_A          216 KVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGF------------------  277 (345)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTT------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCCh------------------
Confidence            99999999999999999999999999999999999999999999999999999999987542                  


Q ss_pred             chhhhhhhchhhhhccccCCCCCCchHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHhhhcCCC----CHHHHHHHHHHH
Q 013736          338 NDKQLKQCGKFERKNVKTGLPDKTSALSVFLVASVLETKNKKLLREAKGLDDVVKILADITGNL----DAKKACNEALKI  413 (437)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ail~~~~~~ll~~~~~~~~i~~~l~~l~~~~----d~~~ll~~A~~l  413 (437)
                                              ..|++|+|+|+|...+++||+ ..|+++++++|+++|...    |++.+++.|..+
T Consensus       278 ------------------------~~~~~~v~~AiL~~~~~~ll~-~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l  332 (345)
T 2qfz_A          278 ------------------------SHFHLYVCAAFLVRWRKEILE-EKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRL  332 (345)
T ss_dssp             ------------------------TTHHHHHHHHHHHHTHHHHHH-CCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHH
T ss_pred             ------------------------hHHHHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHH
Confidence                                    126889999999999999998 579999999999999763    799999999999


Q ss_pred             HHHHHhhhh
Q 013736          414 QKKYLSKVL  422 (437)
Q Consensus       414 ~~~~~~~~~  422 (437)
                      +.+|.....
T Consensus       333 ~~~~~~~~~  341 (345)
T 2qfz_A          333 KFAFADAPN  341 (345)
T ss_dssp             HHHC-----
T ss_pred             HHHHHhhHh
Confidence            998866543
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 437
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 8e-22
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 2e-17
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.3 bits (223), Expect = 8e-22
 Identities = 40/230 (17%), Positives = 79/230 (34%), Gaps = 74/230 (32%)

Query: 45  RWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQ 104
           ++     +   ++    LR+I   GI    + +VW+ L+G    N+  +E    R+++  
Sbjct: 9   KFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEY 67

Query: 105 QYAAWKTECQNIVPIIGSGKFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQW 164
           + +   T                        Q  +D                        
Sbjct: 68  RDSLKHTFSD---------------------QHSRDIPT--------------------- 85

Query: 165 MLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSWVDNDIGYVQGMNDICSPMI-- 222
               HQI +D+ RT+  +  Y+ ++ Q  L  +L +++      GYVQG+ND+ +P    
Sbjct: 86  ---WHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFET 142

Query: 223 --------------------------VLLENEADAFWCFEHTMRRLRENF 246
                                      + + EAD FWC    + ++ +N+
Sbjct: 143 FLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY 192
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query437
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.98
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.83
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.4e-32  Score=249.54  Aligned_cols=158  Identities=24%  Similarity=0.479  Sum_probs=134.1

Q ss_pred             HHHHHhhccCCCccHHHHHHHHHhCCCCCCcHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCCC
Q 013736           44 RRWHAAFSEDGHLDIAKVLRRIQRGGIHPSIKGLVWEFLLGCYDPNSTFEERNQIRQQRRQQYAAWKTECQNIVPIIGSG  123 (437)
Q Consensus        44 ~~W~~~l~~~~~i~~~kl~k~l~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~  123 (437)
                      .+|.+++.+.+.++..+ ++.++++|||+.+|+.||++++|++|.+++  ++.....++++.|..+........      
T Consensus         8 ~~~~~~l~~~~~i~~~~-lr~l~~~Gip~~lR~~vW~~llg~~~~~~~--~~~~~~~~~~~~y~~~~~~~~~~~------   78 (194)
T d1fkma1           8 SKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQ------   78 (194)
T ss_dssp             HHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSS------
T ss_pred             HHHHHHhcccCCCCHHH-HHHHHHcCCChHHHHHHHHHHHhhcCCchh--hHHHHHHHHhhhhhhhhhhhhhcc------
Confidence            58999998877789988 566778999999999999999999999886  455677888899988877642100      


Q ss_pred             ccccccccccCCCccCCCCccccCCCCCCCCccchHHHHHHHHHHhHHhhcccccCCCCcCCCChhhHHHHHHHHHHHhH
Q 013736          124 KFITAAIVTDDGQSLQDSNRDSLDQGWHVDGAISDKKVLQWMLGLHQIGLDVVRTDRSLVFYESETNQAKLWDVLAIYSW  203 (437)
Q Consensus       124 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~L~~IL~~y~~  203 (437)
                                                     .      ....+..++|++||.||+|++++|..+++++.|+|||.+|+.
T Consensus        79 -------------------------------~------~~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~~L~rIL~~ya~  121 (194)
T d1fkma1          79 -------------------------------H------SRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAI  121 (194)
T ss_dssp             -------------------------------C------STHHHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------c------ccchHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHH
Confidence                                           0      001245789999999999999999999999999999999999


Q ss_pred             hcCCCcccCChhhHHHHHHHhcc----------------------------CHHHHHHHHHHHHhhcccCcc
Q 013736          204 VDNDIGYVQGMNDICSPMIVLLE----------------------------NEADAFWCFEHTMRRLRENFR  247 (437)
Q Consensus       204 ~~p~igY~QGm~~Iaa~ll~~~~----------------------------~E~~aF~~f~~l~~~~~~~~~  247 (437)
                      +||++|||||||+|||+|++++.                            .|++|||||+++|+++..+|.
T Consensus       122 ~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~y~  193 (194)
T d1fkma1         122 RHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI  193 (194)
T ss_dssp             HCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred             HCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCC
Confidence            99999999999999999998762                            289999999999999887775
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure