Citrus Sinensis ID: 013740

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
MEANAVIARQPKGRGKMKNEPAQGQNRRVLCDIGNMETLPVVEGKISRPMTRSFCAQLQAAADKNKLVVVDDIVAAATKKGRIVKKPAEPQKKASEIANNDLVVISSDEEENVKEVEAKNEKIKPVGEQSSKERSLRRNDRTFTSVLTARSKAACGITDKPKDLIVNIDAPDVNDDLAVVEYVDDIYMFYKLTEEEGRVHDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKKFSSHKRGAVALLNPAEYLMT
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccccEEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccccccccccc
cccccccccccccccccccccHcccccHHHcccccccccccccccccccccHHHHHHHHcccHHccccHHHcccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccHccccccccHHHHHcHHHHcccccccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHcHEcccccccHccc
meanaviarqpkgrgkmknepaqgqnrrvlcdignmetlpvvegkisrpmtRSFCAQLQAAADKNKLVVVDDIVAAATkkgrivkkpaepqkkaseianndlvvissdeeenvkeveaknekikpvgeqsskerslrrndrTFTSVLTARSkaacgitdkpkdlivnidapdvnddlaVVEYVDDIYMFYKLTEEEGRVHDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYeeiwapqvndficisdyayigSQVLVMEKAILEKLGwyltvptpYVFLVRYVkasvspdqEMENLVFFLAELgishyptvicyCPSMLAAASVYAAHCtlnksplwtetlkhhtgyseeQLKDCAKLLVSFHLAAAESEQKLGVYkkfsshkrgavallnpaeylmt
meanaviarqpkgrgkmknepaqgqnrrvlcdignMETLPVVEGKISRPMTRSFCAQLQaaadknklvVVDDIVAaatkkgrivkkpaepqkkaseianndlvvissdeeenvkeveaknekikpvgeqsskerslrrndrtftsvltarskaacgitdkpkdlivNIDAPDVNDDLAVVEYVDDIYMFYKLTEEEGRVHDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKKFsshkrgavallnpaeylmt
MEANAVIARQPKGRGKMKNEPAQGQNRRVLCDIGNMETLPVVEGKISRPMTRSFCAQLQAAADKNKLVVVDDIVAAATKKGRIVKKPAEPQKKASEIANNDLVVISSDeeenvkeveaknekIKPVGEQSSKERSLRRNDRTFTSVLTARSKAACGITDKPKDLIVNIDAPDVNDDLAVVEYVDDIYMFYKLTEEEGRVHDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKKFSSHKRGAVALLNPAEYLMT
****************************VLCDIGNMETLPVVEGKISRPMTRSFCAQLQAAADKNKLVVVDDIVAAATKK****************************************************************SVLTARSKAACGITDKPKDLIVNIDAPDVNDDLAVVEYVDDIYMFYKLTEEEGRVHDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKKFSSHKRGAVALL********
******************************CDIGNME*****************************************************************************************************************************DLIVNIDAPDVNDDLAVVEYVDDIYMFYKLTEEEGRVHDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKKFSSHKRGAVALLNPAEYLM*
MEANAVIARQP************GQNRRVLCDIGNMETLPVVEGKISRPMTRSFCAQLQAAADKNKLVVVDDIVAAATKKGRIVKKPAEPQKKASEIANNDLVVISSDEEENVKEVEAKNEK***************RNDRTFTSVLTARSKAACGITDKPKDLIVNIDAPDVNDDLAVVEYVDDIYMFYKLTEEEGRVHDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKKFSSHKRGAVALLNPAEYLMT
*****************************LCDIGNMET***************************************************************************************************************************KDLIVNIDAPDVNDDLAVVEYVDDIYMFYKLTEEEGRVHDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKKFSSHKRGAVALLNPAE****
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MEANAVIARQPKGRGKMKNEPAQGQNRRVLCDIGNMETLPVVEGKISRPMTRSFCAQLQAAADKNKLVVVDDIVAAATKKGRIVKKPAEPQKKASEIANNDLVVISSDEEENVKEVEAKNEKIKPVGEQSSKERSLRRNDRTFTSVLTARSKAACGITDKPKDLIVNIDAPDVNDDLAVVEYVDDIYMFYKLTEEEGRVHDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKKFSSHKRGAVALLNPAEYLMT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query437 2.2.26 [Sep-21-2011]
P34800473 G2/mitotic-specific cycli N/A no 0.938 0.866 0.556 1e-122
P25011454 G2/mitotic-specific cycli no no 0.940 0.905 0.528 1e-120
P34801441 G2/mitotic-specific cycli N/A no 0.922 0.913 0.556 1e-120
Q39067445 Cyclin-B1-2 OS=Arabidopsi yes no 0.931 0.914 0.508 1e-111
Q39069414 Cyclin-B1-3 OS=Arabidopsi no no 0.929 0.980 0.506 1e-109
O48790387 Cyclin-B1-4 OS=Arabidopsi no no 0.844 0.953 0.494 1e-107
Q0JIF2449 Cyclin-B1-1 OS=Oryza sati yes no 0.913 0.888 0.507 1e-106
P30183428 Cyclin-B1-1 OS=Arabidopsi no no 0.881 0.899 0.502 1e-105
Q0DH40449 Cyclin-B1-5 OS=Oryza sati yes no 0.897 0.873 0.481 1e-104
P25012257 G2/mitotic-specific cycli no no 0.567 0.964 0.633 3e-91
>sp|P34800|CCN1_ANTMA G2/mitotic-specific cyclin-1 OS=Antirrhinum majus PE=2 SV=1 Back     alignment and function desciption
 Score =  439 bits (1128), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/435 (55%), Positives = 309/435 (71%), Gaps = 25/435 (5%)

Query: 13  GRGKMKNEPAQGQNRRVLCDIGNMETLPVVEGK------ISRPMTRSFCAQL-----QAA 61
           G  K KN   + +NRR L DIGN+ T+  V+GK      +SRP+TRSFCAQL      AA
Sbjct: 19  GAMKQKNIAGEKKNRRALGDIGNLVTVRGVDGKAKAIPQVSRPVTRSFCAQLLANAQTAA 78

Query: 62  ADKNKLVVVDDIVAAATKKGRIVKKPAEP-QKKASEIANN--DLVVISSDEEENVKEVEA 118
           AD NK+     IV       R V     P QKKA+ +     +++VIS D          
Sbjct: 79  ADNNKINAKGAIVVDGVLPDRRVAAARVPAQKKAAVVKPRPEEIIVISPDS--------V 130

Query: 119 KNEKIKPVGEQSSKERSLRRNDRTFTSVLTARSKAACGITDKPKDLIVNIDAPDVNDDLA 178
             +K KP+ ++ + E+S ++   T TS LTARSKAA G+  K K+ IV+IDA DVN+DLA
Sbjct: 131 AEKKEKPIEKEKAAEKSAKKKAPTLTSTLTARSKAASGVKTKTKEQIVDIDAADVNNDLA 190

Query: 179 VVEYVDDIYMFYKLTEEEGRVHDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLT 238
           VVEYV+D+Y FYK  E E R HDYM SQ  IN KMR IL+DWL++VH+KF+L PETLYLT
Sbjct: 191 VVEYVEDMYKFYKSVENESRPHDYMGSQPEINEKMRAILIDWLVQVHHKFELSPETLYLT 250

Query: 239 VNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVME 298
           +NI+DRYL+ +T  RRELQLVGI +MLIA KYEEIWAP+V++ +CISD  Y   Q+LVME
Sbjct: 251 INIVDRYLASETTIRRELQLVGIGAMLIASKYEEIWAPEVHELVCISDNTYSDKQILVME 310

Query: 299 KAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSML 358
           K IL  L WYLTVPTPYVFLVR++KAS++ D ++EN+V+FLAELG+ +Y T+I YCPSM+
Sbjct: 311 KKILGALEWYLTVPTPYVFLVRFIKASMT-DSDVENMVYFLAELGMMNYATLI-YCPSMI 368

Query: 359 AAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKKF 418
           AAASVYAA CTLNK+P W ETL+ HTG+SE QL DCAKLLV+F   A + + K  +Y+K+
Sbjct: 369 AAASVYAARCTLNKAPFWNETLQLHTGFSEPQLMDCAKLLVAFPKMAGDQKLK-SIYRKY 427

Query: 419 SSHKRGAVALLNPAE 433
           S+ +RGAVALL+PA+
Sbjct: 428 SNLERGAVALLSPAK 442
Essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed at mitosis.
Antirrhinum majus (taxid: 4151)
>sp|P25011|CCNB1_SOYBN G2/mitotic-specific cyclin S13-6 OS=Glycine max PE=2 SV=1 Back     alignment and function description
>sp|P34801|CCN2_ANTMA G2/mitotic-specific cyclin-2 OS=Antirrhinum majus PE=2 SV=1 Back     alignment and function description
>sp|Q39067|CCB12_ARATH Cyclin-B1-2 OS=Arabidopsis thaliana GN=CYCB1-2 PE=1 SV=2 Back     alignment and function description
>sp|Q39069|CCB13_ARATH Cyclin-B1-3 OS=Arabidopsis thaliana GN=CYCB1-3 PE=2 SV=2 Back     alignment and function description
>sp|O48790|CCB14_ARATH Cyclin-B1-4 OS=Arabidopsis thaliana GN=CYCB1-4 PE=2 SV=1 Back     alignment and function description
>sp|Q0JIF2|CCB11_ORYSJ Cyclin-B1-1 OS=Oryza sativa subsp. japonica GN=CYCB1-1 PE=2 SV=2 Back     alignment and function description
>sp|P30183|CCB11_ARATH Cyclin-B1-1 OS=Arabidopsis thaliana GN=CYCB1-1 PE=1 SV=2 Back     alignment and function description
>sp|Q0DH40|CCB15_ORYSJ Cyclin-B1-5 OS=Oryza sativa subsp. japonica GN=CYCB1-5 PE=3 SV=1 Back     alignment and function description
>sp|P25012|CCNB2_SOYBN G2/mitotic-specific cyclin S13-7 (Fragment) OS=Glycine max PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
84579361433 Cyclin B1-1 [Daucus carota] 0.945 0.953 0.577 1e-136
22830757432 B1 type cyclin [Daucus carota] 0.942 0.953 0.574 1e-136
89111295440 cyclin B [Camellia sinensis] 0.972 0.965 0.598 1e-134
224106023402 cyclin [Populus trichocarpa] gi|22285042 0.878 0.955 0.601 1e-133
225435947460 PREDICTED: G2/mitotic-specific cyclin-1 0.915 0.869 0.571 1e-132
355898977422 CYC2 [Rosa hybrid cultivar] 0.951 0.985 0.583 1e-132
7271222425 cyclin B1 [Nicotiana tabacum] 0.897 0.922 0.577 1e-131
6093215437 CYCB1-1 protein [Petunia x hybrida] 0.919 0.919 0.593 1e-131
225440137453 PREDICTED: G2/mitotic-specific cyclin S1 0.970 0.935 0.574 1e-131
1076620449 cyclin - common tobacco 0.897 0.873 0.577 1e-131
>gi|84579361|dbj|BAE72069.1| Cyclin B1-1 [Daucus carota] Back     alignment and taxonomy information
 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 258/447 (57%), Positives = 324/447 (72%), Gaps = 34/447 (7%)

Query: 1   MEANAVIA-RQPKGRGKMKNEPAQGQNRRVLCDIGNM-----ETLPVVEGKISRPMTRSF 54
           M + AVI  R  +  GK KN  A+ +NRRVL DIGN+        P    K +RPMTRS 
Sbjct: 1   MASKAVITQRHKEAEGKQKNVQAERRNRRVLGDIGNVVKAVDAGKPKNPIKTNRPMTRSL 60

Query: 55  CAQLQAAA-------DKNKLVVVDDIVAAATKKGRIVKKPAEPQKKASEIANNDLVVISS 107
           CAQL A         D   + ++DD V    +K   V + A  +KK ++      V +S 
Sbjct: 61  CAQLVAKGLPVVGGKDPKDIQLIDDGVVG--RKDASVLEAAAVKKKDTD--QKTTVTLSC 116

Query: 108 DEEENVKEVEAKNEKIKP--VGEQSSKERSLRRNDRTFTSVLTARSKAACGITDKPK-DL 164
           +EE            IKP   G +S  + S  + ++ FTS+L+ARSKAACG+ +KP+ ++
Sbjct: 117 EEE------------IKPKSSGRKSRPDYS-EKTEKAFTSILSARSKAACGLINKPQNEI 163

Query: 165 IVNIDAPDVNDDLAVVEYVDDIYMFYKLTEEEGRVHDYMVSQANINAKMRTILVDWLIEV 224
           I NIDA DV+D+LA VEYVDDIY +YKLTE +G+VHDYM SQ +IN+KMR+IL+DWL+EV
Sbjct: 164 IANIDASDVDDELAAVEYVDDIYKYYKLTEGDGQVHDYMPSQTDINSKMRSILIDWLVEV 223

Query: 225 HNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICI 284
           H KF+LMPE+LYLT+NI+DRYLSMK V RRELQLVG+ SMLIACKYEEIWAP+VNDFI I
Sbjct: 224 HRKFELMPESLYLTINIVDRYLSMKIVPRRELQLVGVGSMLIACKYEEIWAPEVNDFIAI 283

Query: 285 SDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGI 344
           SD AY   QVL+MEK+IL KL WYLTVPTPYVFLVRY+K+SV  D EMEN+ FFLAELG+
Sbjct: 284 SDNAYNREQVLLMEKSILAKLEWYLTVPTPYVFLVRYIKSSVPSDPEMENMTFFLAELGL 343

Query: 345 SHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLA 404
           +HY TV+ YCPS++AA++VYAA CTL KSP WTETLKH+TGYSE+QL+DCAKLLVS+H A
Sbjct: 344 THYTTVMTYCPSVIAASAVYAARCTLKKSPFWTETLKHYTGYSEDQLRDCAKLLVSYHAA 403

Query: 405 AAESEQKLGVYKKFSSHKRGAVALLNP 431
            +ES+ K  VYKKF+  ++G VAL+ P
Sbjct: 404 LSESKLK-AVYKKFARPEKGVVALVPP 429

Source: Daucus carota

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|22830757|dbj|BAC15746.1| B1 type cyclin [Daucus carota] Back     alignment and taxonomy information
>gi|89111295|dbj|BAE80322.1| cyclin B [Camellia sinensis] Back     alignment and taxonomy information
>gi|224106023|ref|XP_002314016.1| cyclin [Populus trichocarpa] gi|222850424|gb|EEE87971.1| cyclin [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225435947|ref|XP_002268488.1| PREDICTED: G2/mitotic-specific cyclin-1 [Vitis vinifera] gi|296083932|emb|CBI24320.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|355898977|gb|AET07178.1| CYC2 [Rosa hybrid cultivar] Back     alignment and taxonomy information
>gi|7271222|emb|CAB81558.1| cyclin B1 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|6093215|emb|CAB58998.1| CYCB1-1 protein [Petunia x hybrida] Back     alignment and taxonomy information
>gi|225440137|ref|XP_002283152.1| PREDICTED: G2/mitotic-specific cyclin S13-6 [Vitis vinifera] gi|297741679|emb|CBI32811.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|1076620|pir||S49904 cyclin - common tobacco Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
TAIR|locus:2080717414 CYCB1;3 "CYCLIN B1;3" [Arabido 0.693 0.731 0.574 2.5e-100
TAIR|locus:2160722445 CYC1BAT [Arabidopsis thaliana 0.926 0.910 0.501 7.1e-100
TAIR|locus:2043818387 CYCB1;4 "Cyclin B1;4" [Arabido 0.656 0.741 0.602 1.8e-97
TAIR|locus:2126377428 CYCB1;1 "CYCLIN B1;1" [Arabido 0.816 0.834 0.514 1.6e-93
TAIR|locus:2030482429 CYCB2;3 "Cyclin B2;3" [Arabido 0.629 0.641 0.455 2.9e-64
TAIR|locus:2057243429 CYCB2;1 "Cyclin B2;1" [Arabido 0.617 0.629 0.478 1e-61
TAIR|locus:2014574431 CYCB2;4 "CYCLIN B2;4" [Arabido 0.935 0.948 0.364 3.4e-61
TAIR|locus:2127948429 CYCB2;2 "Cyclin B2;2" [Arabido 0.629 0.641 0.455 3.9e-60
DICTYBASE|DDB_G0275493436 cycB "G2/M-specific cyclinB" [ 0.620 0.621 0.407 5.2e-49
TAIR|locus:2034250461 CYCA2;4 "Cyclin A2;4" [Arabido 0.810 0.767 0.336 1.1e-46
TAIR|locus:2080717 CYCB1;3 "CYCLIN B1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 880 (314.8 bits), Expect = 2.5e-100, Sum P(2) = 2.5e-100
 Identities = 181/315 (57%), Positives = 231/315 (73%)

Query:   123 IKPVGEQSSKERSLRRNDRTFTSVLTARSKAACGITDKPKDLIVNIDAPDVNDDLAVVEY 182
             I P   + +K +  ++   T++SVL ARSKAA    D        ID  D  +DLA VEY
Sbjct:   109 ISPDTNEVAKAKENKKKV-TYSSVLDARSKAASKTLD--------IDYVDKENDLAAVEY 159

Query:   183 VDDIYMFYKLTEEEGRVHDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNIL 242
             V+D+Y+FYK    E +   YM +Q  I+ KMR+IL+DWL+EVH KF L PETLYLTVNI+
Sbjct:   160 VEDMYIFYKEVVNESKPQMYMHTQPEIDEKMRSILIDWLVEVHVKFDLSPETLYLTVNII 219

Query:   243 DRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAIL 302
             DR+LS+KTV RRELQLVG+S++LIA KYEEIW PQVND + ++D +Y   Q+LVMEK IL
Sbjct:   220 DRFLSLKTVPRRELQLVGVSALLIASKYEEIWPPQVNDLVYVTDNSYNSRQILVMEKTIL 279

Query:   303 EKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAAS 362
               L WYLTVPT YVFLVR++KAS S DQ++ENLV FLAELG+ H+ +++ +CPSMLAA++
Sbjct:   280 GNLEWYLTVPTQYVFLVRFIKASGS-DQKLENLVHFLAELGLMHHDSLM-FCPSMLAASA 337

Query:   363 VYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKKFSSHK 422
             VY A C LNK+P WT+TLK HTGYSE QL DC+KLL   H  A ES+ + GV KK+S   
Sbjct:   338 VYTARCCLNKTPTWTDTLKFHTGYSESQLMDCSKLLAFIHSKAGESKLR-GVLKKYSKLG 396

Query:   423 RGAVALLNPAEYLMT 437
             RGAVAL++PA+ LM+
Sbjct:   397 RGAVALISPAKSLMS 411
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS
GO:0019901 "protein kinase binding" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=IEA;ISS
GO:0005515 "protein binding" evidence=IPI
GO:0000280 "nuclear division" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA
GO:0010440 "stomatal lineage progression" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
GO:0042023 "DNA endoreduplication" evidence=RCA
GO:0051225 "spindle assembly" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
TAIR|locus:2160722 CYC1BAT [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043818 CYCB1;4 "Cyclin B1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126377 CYCB1;1 "CYCLIN B1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030482 CYCB2;3 "Cyclin B2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057243 CYCB2;1 "Cyclin B2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014574 CYCB2;4 "CYCLIN B2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127948 CYCB2;2 "Cyclin B2;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275493 cycB "G2/M-specific cyclinB" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2034250 CYCA2;4 "Cyclin A2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0DH40CCB15_ORYSJNo assigned EC number0.48100.89700.8730yesno
P34801CCN2_ANTMANo assigned EC number0.55680.92210.9138N/Ano
P34800CCN1_ANTMANo assigned EC number0.55630.93820.8668N/Ano
P30284CG21_EMENINo assigned EC number0.30360.90160.8242yesno
Q39067CCB12_ARATHNo assigned EC number0.50810.93130.9146yesno
Q0JIF2CCB11_ORYSJNo assigned EC number0.50710.91300.8886yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CYCB1-4
cyclin (402 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 1e-60
COG5024440 COG5024, COG5024, Cyclin [Cell division and chromo 9e-55
pfam02984117 pfam02984, Cyclin_C, Cyclin, C-terminal domain 8e-41
cd0004388 cd00043, CYCLIN, Cyclin box fold 4e-22
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 4e-20
cd0004388 cd00043, CYCLIN, Cyclin box fold 1e-15
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 7e-15
COG5333297 COG5333, CCL1, Cdk activating kinase (CAK)/RNA pol 0.003
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score =  193 bits (492), Expect = 1e-60
 Identities = 70/127 (55%), Positives = 90/127 (70%), Gaps = 1/127 (0%)

Query: 185 DIYMFYKLTEEEGRV-HDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILD 243
           DIY + +  EEE R   DY+  Q +IN KMR IL+DWL+EVH +FKL+PETLYL VN LD
Sbjct: 1   DIYAYLRELEEEDRPPPDYLDQQPDINPKMRAILIDWLVEVHEEFKLLPETLYLAVNYLD 60

Query: 244 RYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILE 303
           R+LS + V R +LQLVG++ +LIA KYEEI+ P V DF+ I+D AY   ++L ME  IL 
Sbjct: 61  RFLSKQPVPRTKLQLVGVTCLLIAAKYEEIYPPSVEDFVYITDNAYTKEEILRMELLILS 120

Query: 304 KLGWYLT 310
            L W L+
Sbjct: 121 TLNWDLS 127

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|217307 pfam02984, Cyclin_C, Cyclin, C-terminal domain Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|227640 COG5333, CCL1, Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 437
KOG0653391 consensus Cyclin B and related kinase-activating p 100.0
COG5024440 Cyclin [Cell division and chromosome partitioning] 100.0
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 100.0
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 100.0
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 100.0
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.93
TIGR00569305 ccl1 cyclin ccl1. University). 99.88
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.88
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 99.82
KOG0835 367 consensus Cyclin L [General function prediction on 99.74
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 99.72
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.64
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.54
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.52
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.45
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 99.29
KOG1597308 consensus Transcription initiation factor TFIIB [T 99.18
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 98.98
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.75
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.71
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.54
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 97.59
KOG1598 521 consensus Transcription initiation factor TFIIIB, 97.24
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 96.31
KOG1674218 consensus Cyclin [General function prediction only 95.55
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 95.51
PRK00423310 tfb transcription initiation factor IIB; Reviewed 94.26
KOG1675343 consensus Predicted cyclin [General function predi 92.25
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 88.7
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 88.53
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 84.59
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 80.5
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=5e-51  Score=420.62  Aligned_cols=285  Identities=44%  Similarity=0.660  Sum_probs=261.8

Q ss_pred             hhHHhhhhhhcCCCCCCCCcccCCCCCCCCCccchhccHHHHHHHHHHHHHhcCCCcccccCccCcHHHHHHHHHHHHHH
Q 013740          145 SVLTARSKAACGITDKPKDLIVNIDAPDVNDDLAVVEYVDDIYMFYKLTEEEGRVHDYMVSQANINAKMRTILVDWLIEV  224 (437)
Q Consensus       145 s~l~~~s~~~c~~~~~~~~~i~did~~d~~n~~~~~eY~~dI~~~l~~~E~~~~~~~yl~~Q~eIt~~mR~~LVdWLieV  224 (437)
                      ++....+...|+..+.   .+.|+|..|..|++++.||++|||.||+..|.++.|..|+..|++++++||.++||||++|
T Consensus        92 ~~~~~~~~~~~~~~~~---~~~dl~~~d~~~~~~~~ey~~di~~~l~~~e~~~~p~~~~~~~~e~~~~mR~iLvdwlvev  168 (391)
T KOG0653|consen   92 SVLESTSKLASGLSDL---SILDLDSEDKSDPSMIVEYVQDIFEYLRQLELEFLPLSYDISQSEIRAKMRAILVDWLVEV  168 (391)
T ss_pred             ccchhhhhhhcccccc---CccCcchhcccCcHHHHHHHHHHHHHHHHHHHhhCchhhhcccccccHHHHHHHHHHHHHh
Confidence            5666667778887654   4789999999999999999999999999999877788888999999999999999999999


Q ss_pred             HHHcCCChHHHHHHHHHHHHhhhccccccccchhhHhHHHH-hhhcccccCCCChhhHHHhhccccchHHHHHHHHHHHH
Q 013740          225 HNKFKLMPETLYLTVNILDRYLSMKTVNRRELQLVGISSML-IACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILE  303 (437)
Q Consensus       225 ~~~f~L~~eTl~lAV~~lDRfLs~~~V~~~~LQLvgitcL~-IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~  303 (437)
                      |.+|+|.+|||||||+|+||||+...|++.++||+|++||| |||||||.++|.++||+++++++||++||++||+.||+
T Consensus       169 h~~F~L~~ETL~LaVnliDRfL~~~~v~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv~isd~~~s~~~il~mE~~il~  248 (391)
T KOG0653|consen  169 HEKFGLSPETLYLAVNLIDRFLSKVKVPLKKLQLVGVSALLSIACKYEEISLPSVEDLVLITDGAYSREEILRMEKYILN  248 (391)
T ss_pred             hhhcCcCHHHHHHHHHHHHHHHHHhcccHHHhhHHhHHHHHHHHHhhhhccCCccceeEeeeCCccchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999976 99999999999999999999999999999999999999


Q ss_pred             HhCCcccCCchhhHHHHHHHhcCCCChHHHHHHHHHHHHHhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHh
Q 013740          304 KLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHH  383 (437)
Q Consensus       304 ~L~f~L~~pTp~~FL~~fl~~~~~~~~~l~~la~yl~ELsL~d~~~l~~~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~  383 (437)
                      +|+|++++|||+.||++|+++.. .+.+.+.+++|++|++++||.++. ++||.+|+|++++++.++.....|+.++.++
T Consensus       249 ~L~f~l~~p~~~~FLrr~~ka~~-~d~~~~~~~k~~~El~l~d~~~~~-~~~s~~aaa~~~~~~~~~~~~~~w~~~~~~~  326 (391)
T KOG0653|consen  249 VLEFDLSVPTPLSFLRRFLKAAD-YDIKTRTLVKYLLELSLCDYSMLS-IPPSSSAAASFTLALRMLSKGDVWSPTLEHY  326 (391)
T ss_pred             ccCeeecCCchHHHHHHHHHhhh-cchhHHHHHHHHHHHHHhhhHHhc-cCcHHHHHHHHHHHHHHhccCCccCCCCeec
Confidence            99999999999999999999976 888999999999999999999999 9999999999999999998876799999999


Q ss_pred             hCCCHHHHHHHHHHHHHHHHhcccCchhHH-HHhhcCCCccCccc----ccCCCCC
Q 013740          384 TGYSEEQLKDCAKLLVSFHLAAAESEQKLG-VYKKFSSHKRGAVA----LLNPAEY  434 (437)
Q Consensus       384 tgys~~eL~~c~~~L~~l~~~~~~~~l~~a-V~kKYs~~~~~~Va----~~pp~~~  434 (437)
                      +||+..++.+|.+.+..++........... +++||+++.++.++    ..+....
T Consensus       327 sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ky~~~~~~~~~~~~~~~~~~~~  382 (391)
T KOG0653|consen  327 SGYSESYLFECARSLSALSLSSLQNPSLRASVLNKYNSSKFLPASPHVWILEKITS  382 (391)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHhcccchhHHHHHHHhcccccchhhhhcceeccccc
Confidence            999999999999999987766655533325 99999999999999    5665443

>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG1675 consensus Predicted cyclin [General function prediction only] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
3dog_B264 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 5e-41
3ddq_B269 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 6e-41
3ddp_B268 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 6e-41
3bht_B262 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 6e-41
2g9x_B262 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 6e-41
1vin_A268 Bovine Cyclin A3 Length = 268 6e-41
4bco_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 6e-41
3qhr_B261 Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic 1e-40
1vyw_B265 Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 1e-40
4i3z_B257 Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES 1e-40
1fin_B260 Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 1e-40
4ii5_B258 Structure Of Pcdk2/cyclina Bound To Adp And 1 Magne 1e-40
2x1n_B261 Truncation And Optimisation Of Peptide Inhibitors O 1e-40
1qmz_B259 Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com 1e-40
1ogu_B260 Structure Of Human Thr160-phospho Cdk2/cyclin A Com 2e-40
1jst_B258 Phosphorylated Cyclin-Dependent Kinase-2 Bound To C 2e-40
1e9h_B261 Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex 2e-40
3f5x_B256 Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Boun 3e-40
4bcq_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 5e-40
4bcq_D262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 1e-39
2jgz_B260 Crystal Structure Of Phospho-Cdk2 In Complex With C 1e-35
2b9r_A269 Crystal Structure Of Human Cyclin B1 Length = 269 3e-35
1w98_B283 The Structural Basis Of Cdk2 Activation By Cyclin E 2e-20
3g33_B306 Crystal Structure Of Cdk4CYCLIN D3 Length = 306 2e-13
2w9z_A257 Crystal Structure Of Cdk4 In Complex With A D-Type 1e-09
2w96_A271 Crystal Structure Of Cdk4 In Complex With A D-Type 1e-09
1jow_A254 Crystal Structure Of A Complex Of Human Cdk6 And A 3e-07
1bu2_A229 X-Ray Structure Of A Viral Cyclin From Herpesvirus 5e-07
1g3n_C257 Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Com 9e-05
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN Complex With The Inhibitor N-&-N1 Length = 264 Back     alignment and structure 
Iteration: 1

 Score =  165 bits (417), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 101/258 (39%), Positives = 151/258 (58%), Gaps = 3/258 (1%)
Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
           V +Y +DI+ + +  E + +    YM  Q +I   MR ILVDWL+EV  ++KL  ETL+L
Sbjct: 5   VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
            VN +DR+LS  +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D  Y   QVL M
Sbjct: 65  AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
           E  +L+ L + L  PT   FL +Y       + ++E+L  FL EL +      + Y PS+
Sbjct: 125 EHLVLKVLAFDLAAPTINQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
           +AAA+ + A  T+     W E+L   TGY+ E LK C   L   +L A +  Q+  + +K
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQ-SIREK 242
Query: 418 FSSHKRGAVALLNPAEYL 435
           + + K   V+LLNP E L
Sbjct: 243 YKNSKYHGVSLLNPPETL 260
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine Length = 269 Back     alignment and structure
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Cr8 Length = 268 Back     alignment and structure
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 262 Back     alignment and structure
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Nu6271 Length = 262 Back     alignment and structure
>pdb|1VIN|A Chain A, Bovine Cyclin A3 Length = 268 Back     alignment and structure
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 261 Back     alignment and structure
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 265 Back     alignment and structure
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 257 Back     alignment and structure
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 260 Back     alignment and structure
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium Ion Length = 258 Back     alignment and structure
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2, Cyclin A Through Structure Guided Design Length = 261 Back     alignment and structure
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 259 Back     alignment and structure
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 260 Back     alignment and structure
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 258 Back     alignment and structure
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 261 Back     alignment and structure
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At Its Active Site Length = 256 Back     alignment and structure
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 260 Back     alignment and structure
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1 Length = 269 Back     alignment and structure
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 283 Back     alignment and structure
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3 Length = 306 Back     alignment and structure
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 257 Back     alignment and structure
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 271 Back     alignment and structure
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 254 Back     alignment and structure
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri Length = 229 Back     alignment and structure
>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex Length = 257 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 1e-123
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 1e-118
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 1e-109
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 1e-104
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 1e-103
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 1e-100
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 2e-91
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 1e-86
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 9e-29
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 1e-15
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 5e-15
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 6e-15
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 8e-13
2ivx_A257 Cyclin-T2; transcription regulation, cell division 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
 Score =  358 bits (920), Expect = e-123
 Identities = 100/258 (38%), Positives = 150/258 (58%), Gaps = 3/258 (1%)

Query: 179 VVEYVDDIYMFYKLTEEEGRVH-DYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYL 237
           V +Y +DI+ + +  E + +    YM  Q +I   MR ILVDWL+EV  ++KL  ETL+L
Sbjct: 3   VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 62

Query: 238 TVNILDRYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVM 297
            VN +DR+LS  +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D  Y   QVL M
Sbjct: 63  AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122

Query: 298 EKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVFFLAELGISHYPTVICYCPSM 357
           E  +L+ L + L  PT   FL +Y       + ++E+L  FL EL +      + Y PS+
Sbjct: 123 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 182

Query: 358 LAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYKK 417
           +A A+ + A  T+     W E+L   TGY+ E LK C   L   +L A +  Q+  + +K
Sbjct: 183 IAGAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQ-SIREK 240

Query: 418 FSSHKRGAVALLNPAEYL 435
           + + K   V+LLNP E L
Sbjct: 241 YKNSKYHGVSLLNPPETL 258
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query437
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 100.0
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.95
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.9
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.75
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.33
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 98.35
1ais_B200 TFB TFIIB, protein (transcription initiation facto 96.52
1c9b_A207 General transcription factor IIB; protein-DNA comp 94.75
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 87.89
2ivx_A257 Cyclin-T2; transcription regulation, cell division 86.96
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 84.88
2b9r_A 269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 84.73
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 84.27
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 84.23
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 82.56
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 81.93
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 80.81
3rgf_B 285 Cyclin-C; protein kinase complex, transferase,tran 80.22
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
Probab=100.00  E-value=2.7e-57  Score=441.65  Aligned_cols=254  Identities=39%  Similarity=0.611  Sum_probs=242.8

Q ss_pred             hhccHHHHHHHHHHHHHhcCC-CcccccCccCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhccccccccch
Q 013740          179 VVEYVDDIYMFYKLTEEEGRV-HDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMKTVNRRELQ  257 (437)
Q Consensus       179 ~~eY~~dI~~~l~~~E~~~~~-~~yl~~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~~~V~~~~LQ  257 (437)
                      +.||++|||.||++.|.++.| ++||..|++|++.||.+++|||++|+..|+|+++|+|+||+|||||++...+++.++|
T Consensus         3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lq   82 (260)
T 2cch_B            3 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQ   82 (260)
T ss_dssp             CCTTHHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             hHhHHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHh
Confidence            679999999999999999888 6999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHhHHHHhhhcccccCCCChhhHHHhhccccchHHHHHHHHHHHHHhCCcccCCchhhHHHHHHHhcCCCChHHHHHHH
Q 013740          258 LVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGWYLTVPTPYVFLVRYVKASVSPDQEMENLVF  337 (437)
Q Consensus       258 LvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~l~~la~  337 (437)
                      |+|+||||||||+||.++|+++||+.++++.|++++|++||+.||++|+|+++.|||++||.+|++.....+.++..++.
T Consensus        83 lv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~  162 (260)
T 2cch_B           83 LVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAM  162 (260)
T ss_dssp             HHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999986534458899999


Q ss_pred             HHHHHHhcchh-hhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCCHHHHHHHHHHHHHHHHhcccCchhHHHHh
Q 013740          338 FLAELGISHYP-TVICYCPSMLAAASVYAAHCTLNKSPLWTETLKHHTGYSEEQLKDCAKLLVSFHLAAAESEQKLGVYK  416 (437)
Q Consensus       338 yl~ELsL~d~~-~l~~~~PS~IAaAal~lA~~~l~~~~~W~~~L~~~tgys~~eL~~c~~~L~~l~~~~~~~~l~~aV~k  416 (437)
                      |++|++++|+. ++. |+||.||+||+++|+..++. +.|.+.+.+++||++++|.+|++.|..++.....++++ +|++
T Consensus       163 ~l~e~sl~~~~~~~~-~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~~~-~i~~  239 (260)
T 2cch_B          163 FLGELSLIDADPYLK-YLPSVIAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQ-SIRE  239 (260)
T ss_dssp             HHHHHHHHCHHHHTT-SCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSSCC-HHHH
T ss_pred             HHHHHHHHhHHHHhC-CCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcchH-HHHH
Confidence            99999999999 888 99999999999999999986 67999999999999999999999999999988888888 9999


Q ss_pred             hcCCCccCcccccCCCCCC
Q 013740          417 KFSSHKRGAVALLNPAEYL  435 (437)
Q Consensus       417 KYs~~~~~~Va~~pp~~~l  435 (437)
                      ||++++|+.||.+||++.|
T Consensus       240 Ky~~~~~~~vs~~~~~~~~  258 (260)
T 2cch_B          240 KYKNSKYHGVSLLNPPETL  258 (260)
T ss_dssp             HHTSGGGTTGGGSCCCSCC
T ss_pred             HHCcccccceeCCCCcccC
Confidence            9999999999999998865
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 437
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 3e-42
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 6e-42
d2cchb2124 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [T 1e-40
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 2e-40
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 5e-40
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 3e-37
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 2e-30
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 2e-24
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 8e-24
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin A
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  143 bits (362), Expect = 3e-42
 Identities = 57/127 (44%), Positives = 83/127 (65%), Gaps = 1/127 (0%)

Query: 185 DIYMFYKLTEEEGRV-HDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILD 243
           DI+ + +  E + +    YM  Q +I   MR ILVDWL+EV  ++KL  ETL+L VN +D
Sbjct: 1   DIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 60

Query: 244 RYLSMKTVNRRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILE 303
           R+LS  +V R +LQLVG ++ML+A K+EEI+ P+V +F+ I+D  Y   QVL ME  +L+
Sbjct: 61  RFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLK 120

Query: 304 KLGWYLT 310
            L + L 
Sbjct: 121 VLTFDLA 127
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 124 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query437
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 100.0
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.98
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.97
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.96
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.93
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.8
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.8
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.74
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 98.29
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 98.2
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 98.01
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.88
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.84
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 97.71
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.67
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.32
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 96.82
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 96.73
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 96.67
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 96.6
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 95.01
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 90.93
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 82.16
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-34  Score=253.11  Aligned_cols=136  Identities=34%  Similarity=0.603  Sum_probs=128.9

Q ss_pred             CccchhccHHHHHHHHHHHHHhcCC-CcccccCccCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcc-ccc
Q 013740          175 DDLAVVEYVDDIYMFYKLTEEEGRV-HDYMVSQANINAKMRTILVDWLIEVHNKFKLMPETLYLTVNILDRYLSMK-TVN  252 (437)
Q Consensus       175 n~~~~~eY~~dI~~~l~~~E~~~~~-~~yl~~Q~eIt~~mR~~LVdWLieV~~~f~L~~eTl~lAV~~lDRfLs~~-~V~  252 (437)
                      .|.++.+|.+|||.+|.+.|..+.+ ++|++.|++++++||.++||||++++..|+++++|+|+||+||||||+.. .++
T Consensus         3 ~p~~~~~~~~dI~~~l~~~E~~~~~~~~~l~~q~~i~~~~R~~lidW~~~v~~~~~l~~et~~lAv~llDryl~~~~~v~   82 (140)
T d1w98b2           3 LPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVV   82 (140)
T ss_dssp             SCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             CccccccCHHHHHHHHHHHHHhhCCChHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhcccccc
Confidence            3556778999999999999998766 58999999999999999999999999999999999999999999999865 689


Q ss_pred             cccchhhHhHHHHhhhcccccCCCChhhHHHhhccccchHHHHHHHHHHHHHhCCccc
Q 013740          253 RRELQLVGISSMLIACKYEEIWAPQVNDFICISDYAYIGSQVLVMEKAILEKLGWYLT  310 (437)
Q Consensus       253 ~~~LQLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~  310 (437)
                      ++++||+|+||||||||+||..+|.+.+|+.++++.|+.++|++||+.||++|+|+|+
T Consensus        83 ~~~lqL~a~acL~IAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~~~Ln  140 (140)
T d1w98b2          83 KTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS  140 (140)
T ss_dssp             GGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHhHHHHHHHHHHHHHcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCcCC
Confidence            9999999999999999999999999999999999999999999999999999999985
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure