Citrus Sinensis ID: 013741

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
Protein Sequence
MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLSKDRASWWKQLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHcccEEEEccccEEEEcccccHHHHHHHccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHccHHHcccEEcccccccccccccEEEEHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHcHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MTNDEINDIVEETIIKMGLQACAetkignwhlrgissgekKRLSISIEIltqptvllldeptsgldsasAFFVIQVLKCIaldgrivvcsihqpsshlfyLFDDLlllsngetiyfgDAKMAVKFFAeagfpcpsrrnpsdhflrCINSdfdkvagsslksqapteipmssnsqmyLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLSKDRASWWKQLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLnvglsnpaiygrpkCVAFIYGFLICLsvgglpsfiEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVqfhpgfshychFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSpvfrgvsdlpkffwqypmsYITFAAWAIepimedif
Flexible Loop (DISEMBL)
MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSslksqapteipmssnsqmylSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNeqeetvlskdraswWKQLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF
Low Complexity Region (SEG)
MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHlfylfddllllSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLSKDRASWWKQLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF
Disordered region (IsUnstruct)
******NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPS*****DHFLRCINSDF****************************************************************LSKDRASWWKQLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIM****
Disordered Region (DISOPRED)
*TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDK****************************I**KLV**********************************SWWKQLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF
Disordered Region (DISEMBL)
MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAH**********DRASWWKQLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF
Disordered Region (DISPRO)
*TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSD************************MYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLSKDRASWWKQLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLSKDRASWWKQLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	437	2.2.26 [Sep-21-2011]
Q8RWI9	691	ABC transporter G family	yes	no	1.0	0.632	0.559	1e-150
Q9C8K2	687	ABC transporter G family	no	no	1.0	0.636	0.559	1e-143
Q8RXN0	703	ABC transporter G family	no	no	0.981	0.610	0.513	1e-127
Q9C8J8	678	ABC transporter G family	no	no	0.981	0.632	0.509	1e-125
Q9ZUU9	730	ABC transporter G family	no	no	0.963	0.576	0.347	4e-68
Q11180	598	ABC transporter ATP-bindi	yes	no	0.933	0.682	0.305	7e-49
Q9UNQ0	655	ATP-binding cassette sub-	yes	no	0.789	0.526	0.321	1e-46
Q5MB13	654	ATP-binding cassette sub-	yes	no	0.789	0.527	0.322	2e-46
Q55DW4	793	ABC transporter G family	yes	no	0.972	0.535	0.287	4e-46
Q9ZU35	725	ABC transporter G family	no	no	0.915	0.551	0.277	1e-44

>sp|Q8RWI9|AB15G_ARATH ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2

 Score =  531 bits (1368), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 245/438 (55%), Positives = 333/438 (76%), Gaps = 1/438 (0%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           M+ +E++DIVE TI+++GLQ C++  IGNWH RG+S GE+KR+SI++EILT+P +L LDE
Sbjct: 135 MSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDE 194

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           PTSGLDSASAFFVIQ L+ IA DGR V+ S+HQPSS +F LFDDL LLS+GE++YFG+AK
Sbjct: 195 PTSGLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEAK 254

Query: 121 MAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
            AV+FFAE+GFPCP +RNPSDHFLRCINSDFD V  +   SQ   E P +S+  M L+T 
Sbjct: 255 SAVEFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQETPATSDPLMNLATS 314

Query: 181 EIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLSK-DRASWWKQLCILSHRSFLNML 239
            IKA+LVE Y+ S+ +   + R+REL++ E  E  + K   A+WWKQL  L+ RSF+NM 
Sbjct: 315 VIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIRKGSEATWWKQLRTLTARSFINMC 374

Query: 240 RDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFI 299
           RD+GYYW RI+ Y++VSI+VG ++ +VG S  +I  R  C  FI GF+  +S+GG PSF+
Sbjct: 375 RDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIGGFPSFL 434

Query: 300 EEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFC 359
           EE K  Y+ER+S +YG +V++LSN++SSFPFLV +S+ +GTI + +V+F PGFSHY  FC
Sbjct: 435 EEMKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAFFC 494

Query: 360 LSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPM 419
           L++F  VS++E+ MMVVA +VPN LMG+  G  LI ++MM S  FR + DLPK FW+YP+
Sbjct: 495 LNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPDLPKIFWRYPV 554

Query: 420 SYITFAAWAIEPIMEDIF 437
           SYI++ +WAI+   ++ F
Sbjct: 555 SYISYGSWAIQGGYKNDF 572

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8K2|AB12G_ARATH ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1

 Score =  507 bits (1305), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/440 (55%), Positives = 327/440 (74%), Gaps = 3/440 (0%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           +T +E+NDIVE TII++GLQ CA+  IGNWH RG+S GE+KR+S+++EILT+P +L LDE
Sbjct: 134 LTKEEVNDIVEGTIIELGLQDCADRVIGNWHSRGVSGGERKRVSVALEILTRPQILFLDE 193

Query: 61  PTSGLDSASAFFVIQVLKCIALDG-RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119
           PTSGLDSASAFFVIQ L+ IA DG R VV SIHQPSS +F LFDDL LLS+GET+YFG++
Sbjct: 194 PTSGLDSASAFFVIQALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLSSGETVYFGES 253

Query: 120 KMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLST 179
           K AV+FFAEAGFPCP +RNPSDHFLRCINSDFD V  +   SQ   E P +S+  M L+T
Sbjct: 254 KFAVEFFAEAGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIRETPATSDPLMNLAT 313

Query: 180 EEIKAKLVEEYRNSEISMDIRQRVRELAHNEQEE--TVLSKDRASWWKQLCILSHRSFLN 237
            EIKA+LVE YR S  +   + R+RELA  E      V     A+W+KQL  L+ RSF+N
Sbjct: 314 SEIKARLVENYRRSVYAKSAKSRIRELASIEGHHGMEVRKGSEATWFKQLRTLTKRSFVN 373

Query: 238 MLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPS 297
           M RD+GYYW RIV Y++VS  VG ++ +VG S  +I  R  C  FI GF+  +S+GG PS
Sbjct: 374 MCRDIGYYWSRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGFITGFMTFMSIGGFPS 433

Query: 298 FIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCH 357
           FIEE K  Y+ER+S +YG +V+++SN++SSFPFLV +++ +G+I + MV+F PG SH+  
Sbjct: 434 FIEEMKVFYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVKFRPGVSHWAF 493

Query: 358 FCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQY 417
           FCL++F  VS++E+ MMVVA LVPN LMG+  G  +I ++MM S  FR + DLPK FW+Y
Sbjct: 494 FCLNIFFSVSVIESLMMVVASLVPNFLMGLITGAGIIGIIMMTSGFFRLLPDLPKVFWRY 553

Query: 418 PMSYITFAAWAIEPIMEDIF 437
           P+S++++ +WAI+   ++ F
Sbjct: 554 PISFMSYGSWAIQGAYKNDF 573

Involved in the secretion of cuticular wax from epidermal cells to the cuticle.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXN0|AB11G_ARATH ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1

 Score =  455 bits (1170), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/430 (51%), Positives = 300/430 (69%), Gaps = 1/430 (0%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           M   E   +VE TII+MGLQ CA+T IGNWHLRGIS GEK+R+SI++EIL +P +L LDE
Sbjct: 159 MLRSEKRALVERTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDE 218

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           PTSGLDSASAFFV Q L+ ++ DGR V+ SIHQPSS +F LFD L LLS G+T+YFG A 
Sbjct: 219 PTSGLDSASAFFVTQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQAS 278

Query: 121 MAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
            A +FFA+AGFPCP+ RNPSDHFLRCINSDFDKV  ++LK         S +    ++T 
Sbjct: 279 DAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVR-ATLKGSMKLRFEASDDPLEKITTA 337

Query: 181 EIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLSKDRASWWKQLCILSHRSFLNMLR 240
           E    LV+ Y  S+     + +V E++  +         +AS+  Q   L+ RSF+NM R
Sbjct: 338 EAIRLLVDYYHTSDYYYTAKAKVEEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSR 397

Query: 241 DMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIE 300
           D GYYWLR++ Y+LV++ +G +YLNVG S  AI  R  C +F++GF+  +S+GG PSF+E
Sbjct: 398 DFGYYWLRLLIYILVTVCIGTIYLNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSFVE 457

Query: 301 EHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCL 360
           + K   RER++ HYG A FV++N LS+ PFL++++  SGTI ++MV  HPGF+HY  F L
Sbjct: 458 DMKVFQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVL 517

Query: 361 SLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMS 420
            L+  V++VE+ MM +A +VPN LMG+ +G  +  + M+VS  FR  +D+PK FW+YPMS
Sbjct: 518 CLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPNDIPKPFWRYPMS 577

Query: 421 YITFAAWAIE 430
           YI+F  WA++
Sbjct: 578 YISFHFWALQ 587

Required for the cuticle and pollen coat development by controlling cutin and maybe wax transport to the extracellular matrix. Involved in developmental plasticity and stress responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8J8|AB13G_ARATH ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1

 Score =  450 bits (1157), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/442 (50%), Positives = 312/442 (70%), Gaps = 13/442 (2%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           +T +EI+DIVE TI  MGL+ C++  IGNWHLRGIS GEKKRLSI++E+LT+P++L LDE
Sbjct: 120 LTREEISDIVEATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDE 179

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           PTSGLDSASAFFV+Q+L+ IA  G+ VV SIHQPS  +F LFDDLLLLS GET+YFG+A+
Sbjct: 180 PTSGLDSASAFFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAE 239

Query: 121 MAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMY---- 176
            A KFF EAGFPCPSRRNPSDHFLRC+NSDFD V  + ++S+   +   S + Q++    
Sbjct: 240 SATKFFGEAGFPCPSRRNPSDHFLRCVNSDFDNVTAALVESRRINDSSFSLH-QLHETTN 298

Query: 177 -------LSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLSK-DRASWWKQLC 228
                  + T EI+  LV +++ S  +   R R++E+A      T   K  + +WWKQL 
Sbjct: 299 TLDPLDDIPTAEIRTTLVRKFKCSLYAAASRARIQEIASIVGIVTERKKGSQTNWWKQLR 358

Query: 229 ILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLI 288
           IL+ RSF+NM RD+GYYW+RI  Y+++SI VG ++ NVG ++  +     C  F+ GF+ 
Sbjct: 359 ILTQRSFINMSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMAGFMT 418

Query: 289 CLSVGGLPSFIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQF 348
            +S+GG  SFIEE K   RER++ HYG AV+ +SN LSS PF++++ +S+ +I  YMV+F
Sbjct: 419 FMSIGGFQSFIEEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYMVRF 478

Query: 349 HPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVS 408
             G SH+ + CL L C ++ VE+CMM++A +VPN LMG+ +G   I +M++ +  FR   
Sbjct: 479 QSGGSHFFYNCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFFRFFP 538

Query: 409 DLPKFFWQYPMSYITFAAWAIE 430
           DLP  FW+YP+SYI + AWA++
Sbjct: 539 DLPMVFWRYPVSYINYGAWALQ 560

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUU9|AB3G_ARATH ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2

 Score =  259 bits (661), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 149/429 (34%), Positives = 246/429 (57%), Gaps = 8/429 (1%)

Query: 9   IVEETIIKMGLQACAETKIGNW-HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS 67
           +VE+ I  M L   A   IG   +++G+ SGE++R+SI+ E++ +P +L +DEP   LDS
Sbjct: 229 VVEDAIQAMSLSDYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDS 288

Query: 68  ASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFA 127
            SA  ++  LK +A  G  +V +I+Q S+ +F LFD + LLSNG T++FG+    ++ F+
Sbjct: 289 VSALLMMVTLKKLASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 348

Query: 128 EAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTEEIKAKLV 187
            AGFPCP  ++PSDHFLR IN+DFD++       Q       + N    ++   ++A   
Sbjct: 349 NAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEAT-- 406

Query: 188 EEYRNSEISMDIRQRVRELAHNEQEETVL-SKDRASWWKQLCILSHRSFLNMLRDMGYYW 246
             Y++S  +  +   + +L   E+E T L SK +A    ++ +L+ RS L M R+  YYW
Sbjct: 407 --YKSSADADSVEAMIIKL--TEREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYW 462

Query: 247 LRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASY 306
           LR++ Y+++++++G LY  +G S  ++  R   V     F   L + G+PS ++E K   
Sbjct: 463 LRLILYMILTLSIGTLYSGLGHSLSSVATRVAAVFVFVSFASLLGIAGIPSLLKEIKIYR 522

Query: 307 RERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCV 366
            E  + H G  VF+L  FL S PFL ++SISS  + ++MV     FS   +F L+ F C+
Sbjct: 523 SEASNQHSGAFVFLLGQFLGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCL 582

Query: 367 SIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAA 426
            + E  M+ +A +  +V        ++ V+MM+ +  FR  + LPK  W YP +YI+F  
Sbjct: 583 LVNEGLMLFIACIWRDVYWSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYISFHT 642

Query: 427 WAIEPIMED 435
           ++IE ++E+
Sbjct: 643 YSIEGLLEN 651

Arabidopsis thaliana (taxid: 3702)

>sp|Q11180|WHT1_CAEEL ABC transporter ATP-binding protein/permease wht-1 OS=Caenorhabditis elegans GN=wht-1 PE=2 SV=2

 Score =  195 bits (495), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 130/425 (30%), Positives = 215/425 (50%), Gaps = 17/425 (4%)

Query: 10  VEETIIKMGLQACAETKIG-NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA 68
           VE+ + +MGL+ CA+T IG    L+G+S GEKKRLS + EILT P +L  DEPTSGLD+ 
Sbjct: 111 VEQVLTQMGLKKCADTVIGIPNQLKGLSCGEKKRLSFASEILTCPKILFCDEPTSGLDAF 170

Query: 69  SAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAE 128
            A  V+Q L+ +A +G  V+ +IHQPSSH++ LF+++ L++ G  IY G    AV  F +
Sbjct: 171 MAGHVVQALRSLADNGMTVIITIHQPSSHVYSLFNNVCLMACGRVIYLGPGDQAVPLFEK 230

Query: 129 AGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTEEIKAKLVE 188
            G+PCP+  NP+DH +R + +  D    +S+K+       +S   Q +LST+  ++ L  
Sbjct: 231 CGYPCPAYYNPADHLIRTL-AVIDSDRATSMKT-------ISKIRQGFLSTDLGQSVLAI 282

Query: 189 EYRNSEISMDIRQRVRELAHNEQEETVLSKD-RASWWKQLCILSHRSFLNMLRDMGYYWL 247
              N    +     V     +E+ +T  ++D  AS+W Q   L  RS+L ++RD     +
Sbjct: 283 GNAN---KLRAASFVTGSDTSEKTKTFFNQDYNASFWTQFLALFWRSWLTVIRDPNLLSV 339

Query: 248 RIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAF--IYGFLICLSVGGLPSFIEEHKAS 305
           R++  ++ +   GI++    ++ PA       + F  I      L    +P    E    
Sbjct: 340 RLLQILITAFITGIVFFQTPVT-PATIISINGIMFNHIRNMNFMLQFPNVPVITAELPIV 398

Query: 306 YRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCC 365
            RE  +  Y  + + L+  ++  P  +IL I   TI+++M   +P F +YC   L     
Sbjct: 399 LRENANGVYRTSAYFLAKNIAELPQYIILPILYNTIVYWMSGLYPNFWNYCFASLVTILI 458

Query: 366 VSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFF-WQYPMSYITF 424
            ++  +    VA +  N  + M +    +V +M     F     +P +F W   +SY  +
Sbjct: 459 TNVAISISYAVATIFANTDVAMTILPIFVVPIMAFGGFFITFDAIPSYFKWLSSLSYFKY 518

Query: 425 AAWAI 429
              A+
Sbjct: 519 GYEAL 523

Caenorhabditis elegans (taxid: 6239)

>sp|Q9UNQ0|ABCG2_HUMAN ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3

 Score =  187 bits (475), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/355 (32%), Positives = 188/355 (52%), Gaps = 10/355 (2%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           MTN E N+ +   I ++GL   A++K+G   +RG+S GE+KR SI +E++T P++L LDE
Sbjct: 152 MTNHEKNERINRVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDE 211

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           PT+GLDS++A  V+ +LK ++  GR ++ SIHQP   +F LFD L LL++G  ++ G A+
Sbjct: 212 PTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQ 271

Query: 121 MAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
            A+ +F  AG+ C +  NP+D FL  IN D   VA +  +    TEI   S        +
Sbjct: 272 EALGYFESAGYHCEAYNNPADFFLDIINGDSTAVALNREEDFKATEIIEPSKQD-----K 326

Query: 181 EIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLSKDRASWWKQLC----ILSHRSFL 236
            +  KL E Y NS    + +  + +L+  E+++ +      S+    C     +S RSF 
Sbjct: 327 PLIEKLAEIYVNSSFYKETKAELHQLSGGEKKKKITVFKEISYTTSFCHQLRWVSKRSFK 386

Query: 237 NMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLP 296
           N+L +      +I+  V++ + +G +Y  +   +  I  R   + F+       SV  + 
Sbjct: 387 NLLGNPQASIAQIIVTVVLGLVIGAIYFGLKNDSTGIQNRAGVLFFLTTNQCFSSVSAVE 446

Query: 297 SFIEEHKASYRERISCHYGEAVFVLSNFLSS-FPFLVILSISSGTILHYMVQFHP 350
            F+ E K    E IS +Y  + + L   LS   P  ++ SI    I+++M+   P
Sbjct: 447 LFVVEKKLFIHEYISGYYRVSSYFLGKLLSDLLPMRMLPSIIFTCIVYFMLGLKP 501

Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Appears to play a major role in the multidrug resistance phenotype of several cancer cell lines. When overexpressed, the transfected cells become resistant to mitoxantrone, daunorubicin and doxorubicin, display diminished intracellular accumulation of daunorubicin, and manifest an ATP-dependent increase in the efflux of rhodamine 123.

Homo sapiens (taxid: 9606)

>sp|Q5MB13|ABCG2_MACMU ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1

 Score =  187 bits (474), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 190/354 (53%), Gaps = 9/354 (2%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           MTN E N+ +   I ++GL   A++K+G   +RG+S GE+KR SI +E++T P++L LDE
Sbjct: 152 MTNHEKNERINRVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDE 211

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           PT+GLDS++A  V+ +LK ++  GR ++ SIHQP   +F LFD L LL++G  ++ G A+
Sbjct: 212 PTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQ 271

Query: 121 MAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
            A+ +F  AG+ C +  NP+D FL  IN D   VA +  +    TEI   S        +
Sbjct: 272 EALGYFESAGYHCEAYNNPADFFLDIINGDSTAVALNREEDFKATEIIEPSKRD-----K 326

Query: 181 EIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLSKD---RASWWKQLCILSHRSFLN 237
            +  KL E Y +S    + +  + +L+  E+++  + K+     S+  QL  +S RSF N
Sbjct: 327 PLVEKLAEIYVDSSFYKETKAELHQLSGGEKKKITVFKEISYTTSFCHQLRWVSKRSFKN 386

Query: 238 MLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPS 297
           +L +      +I+  V++ + +G +Y  +   +  I  R   + F+       SV  +  
Sbjct: 387 LLGNPQASIAQIIVTVILGLVIGAIYFGLNNDSTGIQNRAGVLFFLTTNQCFSSVSAVEL 446

Query: 298 FIEEHKASYRERISCHYGEAVFVLSNFLSS-FPFLVILSISSGTILHYMVQFHP 350
           F+ E K    E IS +Y  + +     LS   P  ++ SI    I+++M+   P
Sbjct: 447 FVVEKKLFIHEYISGYYRVSSYFFGKLLSDLLPMRMLPSIIFTCIVYFMLGLKP 500

Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). When overexpressed, the transfected cells become resistant to mitoxantrone. Overexpression in bone marrow stem cells does not interfere with hematopoietic stem cell maturation and increases the number of SP cells.

Macaca mulatta (taxid: 9544)

>sp|Q55DW4|ABCG1_DICDI ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1

 Score =  186 bits (471), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 141/491 (28%), Positives = 239/491 (48%), Gaps = 66/491 (13%)

Query: 10  VEETIIKMGLQACAETKIG--NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS 67
           V++ I +MGL  CA+T +G  +  +RGIS GE++R++ISIE+LT P+V+LLDEPTSGLD+
Sbjct: 237 VQDIIDEMGLNRCADTLVGTADNKIRGISGGERRRVTISIELLTGPSVILLDEPTSGLDA 296

Query: 68  ASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFA 127
           +++F+V+  LK +A  GR ++C+IHQP S+++ +FD+LLLL +G TIY+G A  A+++F 
Sbjct: 297 STSFYVMSALKKLAKSGRTIICTIHQPRSNIYDMFDNLLLLGDGNTIYYGKANKALEYFN 356

Query: 128 EAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLS--------- 178
             G+ C  + NP+D FL  IN+  +  A S        E  +                  
Sbjct: 357 ANGYHCSEKTNPADFFLDLINTQVEDQADSDDDDYNDEEEEIGGGGGGSGGGAGGIEDIG 416

Query: 179 ---TEEIKAKLVEEYRNSEI------------SMDIRQRVR--------------ELAHN 209
              +  +    V+  +N+E+            S D R R R              E  ++
Sbjct: 417 ISISPTMNGSAVDNIKNNELKQQQQQQQQQQQSTDGRARRRIKKLTKEEMVILKKEYPNS 476

Query: 210 EQ----EETV--LSKDRASWWK-----------QLCILSHRSFLNMLRDMGYYWLRIVFY 252
           EQ     ET+  +SK+  + +K           Q  +L  R   N  R    + + ++  
Sbjct: 477 EQGLRVNETLDNISKENRTDFKYEKTRGPNFLTQFSLLLGREVTNAKRHPMAFKVNLIQA 536

Query: 253 VLVSITVGILYLNVGLSNPAIYGRPKCVAF-IYGFLICLSVGGLPSFIEEHKASYRERIS 311
           +   +  GI+Y  +GL   ++  R   VAF I G      +  +  F +      ++R S
Sbjct: 537 IFQGLLCGIVYYQLGLGQSSVQSRTGVVAFIIMGVSFPAVMSTIHVFPDVITIFLKDRAS 596

Query: 312 CHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMV--QFHPGFSHYCHFCLSLFCCVSIV 369
             Y    F L+         V+L + + TI+++M   +  P +S    F   L   ++  
Sbjct: 597 GVYDTLPFFLAKSFMDACIAVLLPMVTATIVYWMTNQRVDPFYSAAPFFRFVLMLVLA-S 655

Query: 370 ETCMMVVALL---VPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAA 426
           +TC+ +  L+   VPNV +G  V   +++L  + S  F  ++D+P +   +P  YI+F  
Sbjct: 656 QTCLSLGVLISSSVPNVQVGTAVAPLIVILFFLFSGFFINLNDVPGWLVWFP--YISFFR 713

Query: 427 WAIEPIMEDIF 437
           + IE  + + F
Sbjct: 714 YMIEAAVINAF 724

Dictyostelium discoideum (taxid: 44689)

>sp|Q9ZU35|AB7G_ARATH ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1

 Score =  181 bits (458), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/439 (27%), Positives = 214/439 (48%), Gaps = 39/439 (8%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
           +E ++ V   ++K+GL +CA++ +G+  +RGIS GEKKRLS++ E++  P+V+  DEPT+
Sbjct: 185 EERDEYVNNLLLKLGLVSCADSCVGDAKVRGISGGEKKRLSLACELIASPSVIFADEPTT 244

Query: 64  GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA-KMA 122
           GLD+  A  V++ L+ +A DG  V+CSIHQP   ++  FDD++LL+ G  +Y G A K  
Sbjct: 245 GLDAFQAEKVMETLQKLAQDGHTVICSIHQPRGSVYAKFDDIVLLTEGTLVYAGPAGKEP 304

Query: 123 VKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTEEI 182
           + +F   GF CP   NP++     I+ D+                  SS+  +Y S + +
Sbjct: 305 LTYFGNFGFLCPEHVNPAEFLADLISVDY------------------SSSETVYSSQKRV 346

Query: 183 KAKLVEEY--RNSEI----SMDIRQRVRELAHNEQEETVLSKDRASWWKQLCILSHRSFL 236
            A LV+ +  R+S +     + +++  +      ++  V   D   WW+Q  +L  R+++
Sbjct: 347 HA-LVDAFSQRSSSVLYATPLSMKEETKNGMRPRRKAIVERTD--GWWRQFFLLLKRAWM 403

Query: 237 NMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKC--VAFIYGFLICL--SV 292
              RD     +R    V  ++  G ++  +G S  +I  R     VA I   +  L  +V
Sbjct: 404 QASRDGPTNKVRARMSVASAVIFGSVFWRMGKSQTSIQDRMGLLQVAAINTAMAALTKTV 463

Query: 293 GGLPSFIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGF 352
           G  P   +E     RER    Y    ++LS  ++  P      +  G +L+ M + +P  
Sbjct: 464 GVFP---KERAIVDRERSKGSYSLGPYLLSKTIAEIPIGAAFPLMFGAVLYPMARLNPTL 520

Query: 353 SHYCHFCLSLFCCVSIVETCM-MVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLP 411
           S +  FC  +    S   + M + V  +VP+    M VG +L+ + ++    +    + P
Sbjct: 521 SRFGKFC-GIVTVESFAASAMGLTVGAMVPSTEAAMAVGPSLMTVFIVFGGYYVNADNTP 579

Query: 412 KFFWQYPMSYITFAAWAIE 430
             F   P +  +   WA +
Sbjct: 580 IIFRWIPRA--SLIRWAFQ 596

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
224139878	687	white-brown-complex ABC transporter fami	0.983	0.625	0.633	1e-167
224139880	607	white-brown-complex ABC transporter fami	0.974	0.701	0.625	1e-159
356570462	630	PREDICTED: ABC transporter G family memb	0.979	0.679	0.617	1e-153
224106203	707	white-brown-complex ABC transporter fami	1.0	0.618	0.584	1e-152
356504775	661	PREDICTED: ABC transporter G family memb	0.977	0.645	0.614	1e-151
255577264	697	ATP-binding cassette transporter, putati	0.983	0.616	0.573	1e-150
224054944	675	white-brown-complex ABC transporter fami	1.0	0.647	0.577	1e-148
11994269	594	ABC transporter-like protein [Arabidopsi	0.983	0.723	0.566	1e-148
20260310	691	unknown protein [Arabidopsis thaliana] g	1.0	0.632	0.561	1e-148
297835074	691	abc transporter family protein [Arabidop	1.0	0.632	0.561	1e-148

>gi|224139878|ref|XP_002323321.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222867951|gb|EEF05082.1| white-brown-complex ABC transporter family [Populus trichocarpa]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 273/431 (63%), Positives = 352/431 (81%), Gaps = 1/431 (0%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           MT DEIN ++E TI+KMGLQ CA+ K+GNWHLRG+S GEK+RLSIS+EILTQP VL LDE
Sbjct: 139 MTKDEINSVIENTIMKMGLQDCADNKVGNWHLRGLSGGEKRRLSISLEILTQPYVLFLDE 198

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           PTSGLDSASA FVI  LK IALDGRIVVCSIHQPSS++F LFDDL LLS+GETIYFG+AK
Sbjct: 199 PTSGLDSASALFVIHALKNIALDGRIVVCSIHQPSSYIFDLFDDLCLLSSGETIYFGEAK 258

Query: 121 MAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
           +AVKFFAEAGFPCP+RRNPSDHFLRCINSDFDK+A + L+S   + + + SN +   +TE
Sbjct: 259 LAVKFFAEAGFPCPTRRNPSDHFLRCINSDFDKMASTLLRSLRDSAVSVPSNFETSFTTE 318

Query: 181 EIKAKLVEEYRNSEISMDIRQRVRELAH-NEQEETVLSKDRASWWKQLCILSHRSFLNML 239
           +IKAKL+E+YR+SE S++ R ++R++A  NE+  + L + R +WWKQL  L+ RSF+NM+
Sbjct: 319 DIKAKLIEKYRSSEYSINTRTKIRQIALINEELMSGLIEIRINWWKQLYTLTIRSFVNMI 378

Query: 240 RDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFI 299
           RD+GY+W+R +FY+L+S+  GI+Y +VGLSN A   R KC  ++Y FLICLSVGGLPSF+
Sbjct: 379 RDLGYFWVRTLFYILISLGAGIMYFDVGLSNSAFVTRAKCYTYVYDFLICLSVGGLPSFL 438

Query: 300 EEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFC 359
           EE K SY E ++ HYGEAVF+LSNF +SF FLVI+S+SSGTI+ YMV+FH GFSHYC+ C
Sbjct: 439 EEWKVSYHELLNRHYGEAVFMLSNFFASFIFLVIMSLSSGTIVFYMVKFHLGFSHYCYLC 498

Query: 360 LSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPM 419
           ++ F C +I+E+  M+VALLVPN LMG+GV    ++ + M S ++R + DLPKFFW+YPM
Sbjct: 499 MNFFFCFAIMESVAMIVALLVPNFLMGIGVSAFAVMFLSMASGLYRPLPDLPKFFWRYPM 558

Query: 420 SYITFAAWAIE 430
           +YI+F +WA++
Sbjct: 559 AYISFTSWAVQ 569

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139880|ref|XP_002323322.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222867952|gb|EEF05083.1| white-brown-complex ABC transporter family [Populus trichocarpa]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 271/433 (62%), Positives = 347/433 (80%), Gaps = 7/433 (1%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           MT +EI+ +V+ TI++MGLQ CA++KIGNWHLRGIS+GEKKRLSIS+EILT+P ++LLDE
Sbjct: 61  MTKEEIDSVVDNTIMEMGLQDCADSKIGNWHLRGISTGEKKRLSISVEILTRPHIMLLDE 120

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           PT+GLDSASAFFVI+ L  IA DG+IV+CS+HQPSS +F L DDLLLLS GET+YFG+AK
Sbjct: 121 PTTGLDSASAFFVIRALNSIAYDGKIVICSLHQPSSDVFNLLDDLLLLSGGETVYFGEAK 180

Query: 121 MAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
           MAVKFFAEAGFPCP++RNPSDHFLRCIN DFD +A + L+ Q    IP SS+  + + T 
Sbjct: 181 MAVKFFAEAGFPCPTKRNPSDHFLRCINLDFDIIAEALLRYQNICAIPESSSYSVKMKTA 240

Query: 181 EIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLSKDR---ASWWKQLCILSHRSFLN 237
           EI+  L+E+Y+ SE S++ R+R++E++    EE  +  ++   AS W QL  L+ RSF+N
Sbjct: 241 EIRETLIEKYKCSEFSINTRRRIQEIS----EEPAIEPNKRINASSWNQLSTLTRRSFVN 296

Query: 238 MLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPS 297
           M RD+GYYWLR+V YVL+S+++G+L+ N G     I  R KCV F+YGF+ICLS GGLP 
Sbjct: 297 MHRDIGYYWLRMVLYVLISLSIGVLFFNSGTDRETILERAKCVCFVYGFMICLSCGGLPF 356

Query: 298 FIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCH 357
           FIEE K   RER+   YGEAV VLSNF SSFPFL+ +S+ SGTI++YMV+FHPGF HY  
Sbjct: 357 FIEEMKVFRRERLGGDYGEAVLVLSNFFSSFPFLLAISLLSGTIIYYMVKFHPGFPHYAF 416

Query: 358 FCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQY 417
           FC++LFCC+S++ETCMM+VA LVPNVLMG+G+GT +IV MMM S +FR V DLPKFFW+Y
Sbjct: 417 FCINLFCCLSVIETCMMIVASLVPNVLMGIGIGTGVIVFMMMASEIFRPVPDLPKFFWRY 476

Query: 418 PMSYITFAAWAIE 430
           P+SYI+FA WAI+
Sbjct: 477 PVSYISFATWAIQ 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570462|ref|XP_003553406.1| PREDICTED: ABC transporter G family member 15-like [Glycine max]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 266/431 (61%), Positives = 340/431 (78%), Gaps = 3/431 (0%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           M+ +EIN +VEETI++MGL+ CA+T+IGNWH RGIS+GEKKRLSI +EILTQP VLLLDE
Sbjct: 111 MSKEEINKVVEETIMEMGLEDCADTRIGNWHCRGISNGEKKRLSIGLEILTQPHVLLLDE 170

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           PT+GLDSASAF+VIQ L  IAL+G+IV+CSIHQPSS  F LFDDLLLLS GET+YFG+A 
Sbjct: 171 PTTGLDSASAFYVIQSLCHIALNGKIVICSIHQPSSETFDLFDDLLLLSIGETVYFGEAN 230

Query: 121 MAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
           MA+KFFA+AG P PSRRNPSDHFL CIN DFD +  +  +SQ   ++P SSNS +     
Sbjct: 231 MALKFFADAGLPFPSRRNPSDHFLLCINLDFDLLTSALARSQL--DLPSSSNSALGTKKA 288

Query: 181 EIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLS-KDRASWWKQLCILSHRSFLNML 239
           EI+  L+  Y+ S I ++ R+R+++L  NE+++   +    A+WWKQLC L+ RSF+NM 
Sbjct: 289 EIRETLIRSYKGSGIMINARRRIQQLKPNEEQKIKPNIGSSATWWKQLCTLTKRSFVNMT 348

Query: 240 RDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFI 299
           RD+GYYWLR+VFY+LV ITVG LY ++G +N +I  R KCV+FIYGF ICLS GGLP FI
Sbjct: 349 RDIGYYWLRMVFYILVGITVGTLYFHIGTANNSILDRGKCVSFIYGFNICLSCGGLPFFI 408

Query: 300 EEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFC 359
           EE K  Y ER   HYGEA FV+SN +SSFPFLV+ S+SSG I+++MVQ HPG +++  FC
Sbjct: 409 EELKVFYGERSKGHYGEAAFVVSNIISSFPFLVLTSLSSGIIIYFMVQLHPGLTNFAFFC 468

Query: 360 LSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPM 419
           + LFCC+S+VE CMM+VA +VPNVLMG+G GT +IV MMM S +FR + D+PKFFW+YPM
Sbjct: 469 IDLFCCISVVECCMMIVASVVPNVLMGLGTGTGVIVFMMMPSLLFRPLQDIPKFFWRYPM 528

Query: 420 SYITFAAWAIE 430
           SY++F  WA++
Sbjct: 529 SYLSFTTWAVQ 539

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106203|ref|XP_002314084.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222850492|gb|EEE88039.1| white-brown-complex ABC transporter family [Populus trichocarpa]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 256/438 (58%), Positives = 331/438 (75%), Gaps = 1/438 (0%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           MT  EI+D+VE TI++MGLQ C++  +GNWHLRGIS GEKKRLSI++EILT+P +L LDE
Sbjct: 159 MTKGEIDDVVEATIMEMGLQECSDRVVGNWHLRGISGGEKKRLSIALEILTRPRLLFLDE 218

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           PTSGLDSASAFFVIQ L+ IA DGR V+ SIHQPSS +F LFDDL LLS+GET+YFGDAK
Sbjct: 219 PTSGLDSASAFFVIQTLRNIARDGRTVISSIHQPSSEVFALFDDLFLLSSGETVYFGDAK 278

Query: 121 MAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
           MAV+FFAEAGFPCP R+NPSDHFLRCINSDFD +  +   SQ   ++P S++  + L+T 
Sbjct: 279 MAVEFFAEAGFPCPRRKNPSDHFLRCINSDFDAITATLKGSQRIRDVPKSADPLINLATA 338

Query: 181 EIKAKLVEEYRNSEISMDIRQRVRELAHNEQ-EETVLSKDRASWWKQLCILSHRSFLNML 239
           EIKA+LVE+YR S I+  ++ RV++++  E  E  + S   ASWWKQL  L+ RSF+NM 
Sbjct: 339 EIKARLVEKYRRSNIAQKVKARVKDISAIEGLEVDIRSGSDASWWKQLSTLTRRSFVNMS 398

Query: 240 RDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFI 299
           RD+GYYW RIV Y++VSI VG +Y +VG    AI  R  C  FI GF+  +S+GG PSFI
Sbjct: 399 RDVGYYWARIVIYIVVSICVGTIYYDVGYGYTAILARVACGGFITGFMTFMSIGGFPSFI 458

Query: 300 EEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFC 359
           EE K  YRE+++ +YG  VF+LSN+LSSFPFLV +++ SGTI  Y+V+F  GF+HY  FC
Sbjct: 459 EEMKVFYREKLNGYYGVTVFILSNYLSSFPFLVSIALLSGTICFYLVKFRSGFNHYVFFC 518

Query: 360 LSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPM 419
           L++F  +S++E+ MMV+A LVPN LMG+  G  +I +MMM S  FR + DLPK FW+YP+
Sbjct: 519 LNIFGSISVIESLMMVIASLVPNFLMGLITGAGIIGIMMMTSGFFRLLPDLPKPFWRYPV 578

Query: 420 SYITFAAWAIEPIMEDIF 437
           SYI + AW I+   ++ F
Sbjct: 579 SYINYGAWGIQGAYKNDF 596

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504775|ref|XP_003521170.1| PREDICTED: ABC transporter G family member 15-like [Glycine max]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 265/431 (61%), Positives = 343/431 (79%), Gaps = 4/431 (0%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           MT +EIN +VE TI++MGL+ CA+T+IGNWH RGIS+GEKKRLSI +EILTQP VLLLDE
Sbjct: 116 MTKEEINKVVENTIMEMGLEDCADTRIGNWHCRGISNGEKKRLSIGLEILTQPYVLLLDE 175

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           PT+GLDSASAF+V+Q L  IA  G+IV+CSIHQPSS +F LFDDLLLLS+GET+YFG+AK
Sbjct: 176 PTTGLDSASAFYVVQSLCHIAHSGKIVICSIHQPSSEIFSLFDDLLLLSSGETVYFGEAK 235

Query: 121 MAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
           MA+KFFA+AGFPCP+RRNPSDHFL CIN DF+ +  +  ++Q    IP  +NS + + T 
Sbjct: 236 MALKFFADAGFPCPTRRNPSDHFLMCINLDFELITEALQRTQL-NLIP--TNSTIGMRTS 292

Query: 181 EIKAKLVEEYRNSEISMDIRQRVRELAHNEQEE-TVLSKDRASWWKQLCILSHRSFLNML 239
           EI+  L++ Y++S++ +D R+R+ +L  NE++E         +W KQL  L+ RSFLNM 
Sbjct: 293 EIRRILIQSYKSSKLMIDARKRIEQLKPNEEQEIKPYIGSSTTWRKQLYTLTERSFLNMT 352

Query: 240 RDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFI 299
           RD+GYYWLRIVFY+LV IT+G L+ ++G  N +I  R KCV+FIYGF+ICLS GGLP FI
Sbjct: 353 RDIGYYWLRIVFYILVGITIGTLFFHIGTGNNSILARGKCVSFIYGFMICLSCGGLPFFI 412

Query: 300 EEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFC 359
           EE K  Y ER   HYGEA FV+SN +SSFPFLV+ S+SSG I+++MVQFHPG S+   FC
Sbjct: 413 EELKVFYGERSKGHYGEAAFVVSNIISSFPFLVLTSLSSGIIIYFMVQFHPGLSNCAFFC 472

Query: 360 LSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPM 419
           ++LFCC+S+VE C+M+VA +VPNVLMG+G GT +IV MMM S +FR + D+PKFFW+YPM
Sbjct: 473 INLFCCLSVVECCIMIVASVVPNVLMGIGTGTGVIVFMMMPSQIFRSLPDIPKFFWRYPM 532

Query: 420 SYITFAAWAIE 430
           SY++FAAWA++
Sbjct: 533 SYLSFAAWAVQ 543

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577264|ref|XP_002529514.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223531030|gb|EEF32883.1| ATP-binding cassette transporter, putative [Ricinus communis]

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 247/431 (57%), Positives = 337/431 (78%), Gaps = 1/431 (0%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           MT +EI+ +VEET+ +MGLQ CA +KIGNWHLRGIS GEK+R+SIS+E+LTQP V+ LDE
Sbjct: 147 MTKEEIDAVVEETMKEMGLQDCANSKIGNWHLRGISGGEKRRVSISLEMLTQPHVMFLDE 206

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           PTSGLDSASA+FV++ LK IALD RIVVCS+HQPSS  F LFDDL LLS+GET+YFGDAK
Sbjct: 207 PTSGLDSASAYFVLEALKNIALDERIVVCSVHQPSSFTFDLFDDLCLLSSGETVYFGDAK 266

Query: 121 MAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
            A+KFFAEAGFPCP+R+NP+DHFLRCIN+DFDK++   L++Q     P SS+S + L+ E
Sbjct: 267 TALKFFAEAGFPCPTRKNPADHFLRCINTDFDKISAIRLRTQRDLGSPESSSSHINLNIE 326

Query: 181 EIKAKLVEEYRNSEISMDIRQRVRELAH-NEQEETVLSKDRASWWKQLCILSHRSFLNML 239
           +IKA L+E+Y+NSE S+  R+RVRE+A  N++  + L    +SW KQLC L+ RSF+N+ 
Sbjct: 327 DIKAILIEKYKNSEYSISTRKRVREIALVNDEPMSDLKMKNSSWGKQLCTLTSRSFVNIT 386

Query: 240 RDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFI 299
           RD+ YYW+RI+F V+V+   GI++ ++GLS P+I  R KC  F Y  ++ L VGGLPS  
Sbjct: 387 RDVRYYWIRILFCVIVASGAGIMFFDIGLSLPSILTRSKCYTFFYDIMLVLCVGGLPSIT 446

Query: 300 EEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFC 359
           +E K  + ER++ HYGE VFV+SNFL++FPF+ I ++SSG+I+++MV+FH G S  CHFC
Sbjct: 447 DEWKVLHYERLNGHYGEGVFVMSNFLATFPFMAITAVSSGSIIYFMVKFHMGISILCHFC 506

Query: 360 LSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPM 419
           ++ FCC+ I+E+  M+VA L+PN LMG+G    +IV + + + ++R +S LPKFFW+YPM
Sbjct: 507 VNTFCCICIMESIAMIVAFLLPNFLMGVGASAGVIVFLTIPAGLYRQLSYLPKFFWRYPM 566

Query: 420 SYITFAAWAIE 430
           SYI+F  W+++
Sbjct: 567 SYISFTTWSVQ 577

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054944|ref|XP_002298391.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222845649|gb|EEE83196.1| white-brown-complex ABC transporter family [Populus trichocarpa]

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/438 (57%), Positives = 324/438 (73%), Gaps = 1/438 (0%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           M  +EI+ +VE TI++MGLQ CA+  +GNWHLRGIS GEKKRLSI+IEILT+P +L LDE
Sbjct: 127 MRKEEIDCVVEGTIMEMGLQDCADRMVGNWHLRGISGGEKKRLSIAIEILTRPHLLFLDE 186

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           PTSGLDSASAFFVIQ L+ IA DGR ++ SIHQPSS +F LFDDL LLS GET+YFGDAK
Sbjct: 187 PTSGLDSASAFFVIQTLRNIARDGRTIISSIHQPSSEVFALFDDLFLLSGGETVYFGDAK 246

Query: 121 MAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
           MA++FFAEAGFPCP RRNPSDHFLRCINSDFD +  +   SQ   ++P+S++  M  +TE
Sbjct: 247 MAIEFFAEAGFPCPRRRNPSDHFLRCINSDFDAITATLKGSQKIRDVPISADPLMSFATE 306

Query: 181 EIKAKLVEEYRNSEISMDIRQRVRELAHNEQEET-VLSKDRASWWKQLCILSHRSFLNML 239
           EIK++LVE+YR S  +   + RV+E++  E  E    S   ASW KQL  L+ RSF+NM 
Sbjct: 307 EIKSRLVEKYRRSNYAQKAKARVKEISAIEGLEVETQSGSEASWRKQLSTLTRRSFVNMS 366

Query: 240 RDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFI 299
           RD+GYYW RIV Y++VSI VG +Y +VG    AI  R  C  FI GF+  +S+GG PSFI
Sbjct: 367 RDVGYYWARIVIYIVVSICVGTIYHDVGHDYTAILARVACGGFITGFMTFMSIGGFPSFI 426

Query: 300 EEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFC 359
           EE K  YRE+++ +YG  VF+LSN+ SSFPFLV +++ +GTI  Y+V+F  GF+HY  FC
Sbjct: 427 EEMKVFYREKLNGYYGVTVFILSNYFSSFPFLVTIALLTGTICFYLVKFRSGFNHYVFFC 486

Query: 360 LSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPM 419
           L++F  +S++E+ MMVVA LVPN L G+  G  +I +MMM S  FR + DLPK FW+YP+
Sbjct: 487 LNIFGAISVIESLMMVVASLVPNFLTGLITGAGIIGIMMMTSGFFRLLPDLPKPFWRYPV 546

Query: 420 SYITFAAWAIEPIMEDIF 437
           SYI F AW I+   ++ F
Sbjct: 547 SYINFGAWGIQGAYKNDF 564

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11994269|dbj|BAB01452.1| ABC transporter-like protein [Arabidopsis thaliana]

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 244/431 (56%), Positives = 330/431 (76%), Gaps = 1/431 (0%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           M+ +E++DIVE TI+++GLQ C++  IGNWH RG+S GE+KR+SI++EILT+P +L LDE
Sbjct: 135 MSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDE 194

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           PTSGLDSASAFFVIQ L+ IA DGR V+ S+HQPSS +F LFDDL LLS+GE++YFG+AK
Sbjct: 195 PTSGLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEAK 254

Query: 121 MAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
            AV+FFAE+GFPCP +RNPSDHFLRCINSDFD V  +   SQ   E P +S+  M L+T 
Sbjct: 255 SAVEFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQETPATSDPLMNLATS 314

Query: 181 EIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLSK-DRASWWKQLCILSHRSFLNML 239
            IKA+LVE Y+ S+ +   + R+REL++ E  E  + K   A+WWKQL  L+ RSF+NM 
Sbjct: 315 VIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIRKGSEATWWKQLRTLTARSFINMC 374

Query: 240 RDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFI 299
           RD+GYYW RI+ Y++VSI+VG ++ +VG S  +I  R  C  FI GF+  +S+GG PSF+
Sbjct: 375 RDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIGGFPSFL 434

Query: 300 EEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFC 359
           EE K  Y+ER+S +YG +V++LSN++SSFPFLV +S+ +GTI + +V+F PGFSHY  FC
Sbjct: 435 EEMKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAFFC 494

Query: 360 LSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPM 419
           L++F  VS++E+ MMVVA +VPN LMG+  G  LI ++MM S  FR + DLPK FW+YP+
Sbjct: 495 LNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPDLPKIFWRYPV 554

Query: 420 SYITFAAWAIE 430
           SYI++ +WAI+
Sbjct: 555 SYISYGSWAIQ 565

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20260310|gb|AAM13053.1| unknown protein [Arabidopsis thaliana] gi|23198394|gb|AAN15724.1| unknown protein [Arabidopsis thaliana]

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 246/438 (56%), Positives = 333/438 (76%), Gaps = 1/438 (0%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           M+ +E++DIVE TII++GLQ C++  IGNWH RG+S GE+KR+SI++EILT+P +L LDE
Sbjct: 135 MSKEEVSDIVEGTIIELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDE 194

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           PTSGLDSASAFFVIQ L+ IA DGR V+ S+HQPSS +F LFDDL LLS+GE++YFG+AK
Sbjct: 195 PTSGLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEAK 254

Query: 121 MAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
            AV+FFAE+GFPCP +RNPSDHFLRCINSDFD V  +   SQ   E P +S+  M L+T 
Sbjct: 255 SAVEFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQETPATSDPLMNLATS 314

Query: 181 EIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLSK-DRASWWKQLCILSHRSFLNML 239
            IKA+LVE Y+ S+ +   + R+REL++ E  E  + K   A+WWKQL  L+ RSF+NM 
Sbjct: 315 VIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIRKGSEATWWKQLRTLTARSFINMC 374

Query: 240 RDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFI 299
           RD+GYYW RI+ Y++VSI+VG ++ +VG S  +I  R  C  FI GF+  +S+GG PSF+
Sbjct: 375 RDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIGGFPSFL 434

Query: 300 EEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFC 359
           EE K  Y+ER+S +YG +V++LSN++SSFPFLV +S+ +GTI + +V+F PGFSHY  FC
Sbjct: 435 EEMKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAFFC 494

Query: 360 LSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPM 419
           L++F  VS++E+ MMVVA +VPN LMG+  G  LI ++MM S  FR + DLPK FW+YP+
Sbjct: 495 LNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPDLPKIFWRYPV 554

Query: 420 SYITFAAWAIEPIMEDIF 437
           SYI++ +WAI+   ++ F
Sbjct: 555 SYISYGSWAIQGGYKNDF 572

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835074|ref|XP_002885419.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297331259|gb|EFH61678.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 246/438 (56%), Positives = 333/438 (76%), Gaps = 1/438 (0%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           M+ +E++DIVE TI+++GLQ C++  IGNWH RG+S GE+KR+SI++EILT+P +L LDE
Sbjct: 135 MSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDE 194

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           PTSGLDSASAFFVIQ L+ IA DGR V+ S+HQPSS +F LFDDL LLS+GE++YFG+AK
Sbjct: 195 PTSGLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEAK 254

Query: 121 MAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
            AV+FFAE+GFPCP +RNPSDHFLRCINSDFD V  +   SQ   E P +S+  M L+T 
Sbjct: 255 SAVEFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQETPATSDPLMNLATS 314

Query: 181 EIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLSK-DRASWWKQLCILSHRSFLNML 239
            IKA+LVE Y+ S+ +   + R+REL++ E  E  + K   ASWWKQL  L+ RSF+NM 
Sbjct: 315 VIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIRKGSEASWWKQLRTLTARSFINMC 374

Query: 240 RDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFI 299
           RD+GYYW RI+ Y++VSI+VG ++ +VG S  +I  R  C  FI GF+  +S+GG PSF+
Sbjct: 375 RDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIGGFPSFL 434

Query: 300 EEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFC 359
           EE K  Y+ER+S +YG +V++LSN++SSFPFLV +S+ +GTI + +V+F PGFSHY  FC
Sbjct: 435 EEMKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAFFC 494

Query: 360 LSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPM 419
           L++F  VS++E+ MMVVA +VPN LMG+  G  LI ++MM S  FR + DLPK FW+YP+
Sbjct: 495 LNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPDLPKIFWRYPV 554

Query: 420 SYITFAAWAIEPIMEDIF 437
           SYI++ +WAI+   ++ F
Sbjct: 555 SYISYGSWAIQGGYKNDF 572

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
TAIR|locus:2092960	691	ABCG15 "ATP-binding cassette G	0.983	0.622	0.547	1.2e-129
TAIR|locus:2033899	687	ABCG12 "ATP-binding cassette G	1.0	0.636	0.540	2.9e-126
TAIR|locus:2033939	678	ABCG13 "ATP-binding cassette G	0.981	0.632	0.488	3.5e-114
TAIR|locus:2030898	703	ABCG11 "ATP-binding cassette G	0.977	0.607	0.5	9.4e-114
TAIR|locus:2046203	730	ABCG3 "ATP-binding cassette G3	0.963	0.576	0.333	1.6e-61
DICTYBASE|DDB_G0269214	793	abcG1 "ABC transporter G famil	0.338	0.186	0.44	2.7e-46
WB|WBGene00015479	598	wht-1 [Caenorhabditis elegans	0.931	0.680	0.300	3.9e-44
UNIPROTKB|Q11180	598	wht-1 "ABC transporter ATP-bin	0.931	0.680	0.300	3.9e-44
CGD|CAL0002254	579	orf19.3120 [Candida albicans (	0.329	0.248	0.413	5.4e-43
UNIPROTKB|Q5A0X6	579	CaO19.10632 "Putative uncharac	0.329	0.248	0.413	5.4e-43

TAIR|locus:2092960 ABCG15 "ATP-binding cassette G15" [Arabidopsis thaliana (taxid:3702)]

 Score = 1272 (452.8 bits), Expect = 1.2e-129, P = 1.2e-129
 Identities = 236/431 (54%), Positives = 321/431 (74%)

Query:     1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
             M+ +E++DIVE TI+++GLQ C++  IGNWH RG+S GE+KR+SI++EILT+P +L LDE
Sbjct:   135 MSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDE 194

Query:    61 PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDAK 120
             PTSGLDSASAFFVIQ L+ IA DGR V+ S+HQPSS            S+GE++YFG+AK
Sbjct:   195 PTSGLDSASAFFVIQALRNIARDGRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEAK 254

Query:   121 MAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
              AV+FFAE+GFPCP +RNPSDHFLRCINSDFD V  +   SQ   E P +S+  M L+T 
Sbjct:   255 SAVEFFAESGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIQETPATSDPLMNLATS 314

Query:   181 EIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLSK-DRASWWKQLCILSHRSFLNML 239
              IKA+LVE Y+ S+ +   + R+REL++ E  E  + K   A+WWKQL  L+ RSF+NM 
Sbjct:   315 VIKARLVENYKRSKYAKSAKSRIRELSNIEGLEMEIRKGSEATWWKQLRTLTARSFINMC 374

Query:   240 RDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFI 299
             RD+GYYW RI+ Y++VSI+VG ++ +VG S  +I  R  C  FI GF+  +S+GG PSF+
Sbjct:   375 RDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIGGFPSFL 434

Query:   300 EEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFC 359
             EE K  Y+ER+S +YG +V++LSN++SSFPFLV +S+ +GTI + +V+F PGFSHY  FC
Sbjct:   435 EEMKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAFFC 494

Query:   360 LSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPM 419
             L++F  VS++E+ MMVVA +VPN LMG+  G  LI ++MM S  FR + DLPK FW+YP+
Sbjct:   495 LNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPDLPKIFWRYPV 554

Query:   420 SYITFAAWAIE 430
             SYI++ +WAI+
Sbjct:   555 SYISYGSWAIQ 565

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0080167 "response to karrikin" evidence=IEP

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2033899 ABCG12 "ATP-binding cassette G12" [Arabidopsis thaliana (taxid:3702)]

 Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
 Identities = 238/440 (54%), Positives = 318/440 (72%)

Query:     1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
             +T +E+NDIVE TII++GLQ CA+  IGNWH RG+S GE+KR+S+++EILT+P +L LDE
Sbjct:   134 LTKEEVNDIVEGTIIELGLQDCADRVIGNWHSRGVSGGERKRVSVALEILTRPQILFLDE 193

Query:    61 PTSGLDSASAFFVIQVLKCIALDG-RIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDA 119
             PTSGLDSASAFFVIQ L+ IA DG R VV SIHQPSS            S+GET+YFG++
Sbjct:   194 PTSGLDSASAFFVIQALRNIARDGGRTVVSSIHQPSSEVFALFDDLFLLSSGETVYFGES 253

Query:   120 KMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLST 179
             K AV+FFAEAGFPCP +RNPSDHFLRCINSDFD V  +   SQ   E P +S+  M L+T
Sbjct:   254 KFAVEFFAEAGFPCPKKRNPSDHFLRCINSDFDTVTATLKGSQRIRETPATSDPLMNLAT 313

Query:   180 EEIKAKLVEEYRNSEISMDIRQRVRELAHNEQEE--TVLSKDRASWWKQLCILSHRSFLN 237
              EIKA+LVE YR S  +   + R+RELA  E      V     A+W+KQL  L+ RSF+N
Sbjct:   314 SEIKARLVENYRRSVYAKSAKSRIRELASIEGHHGMEVRKGSEATWFKQLRTLTKRSFVN 373

Query:   238 MLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPS 297
             M RD+GYYW RIV Y++VS  VG ++ +VG S  +I  R  C  FI GF+  +S+GG PS
Sbjct:   374 MCRDIGYYWSRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGFITGFMTFMSIGGFPS 433

Query:   298 FIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCH 357
             FIEE K  Y+ER+S +YG +V+++SN++SSFPFLV +++ +G+I + MV+F PG SH+  
Sbjct:   434 FIEEMKVFYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVKFRPGVSHWAF 493

Query:   358 FCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQY 417
             FCL++F  VS++E+ MMVVA LVPN LMG+  G  +I ++MM S  FR + DLPK FW+Y
Sbjct:   494 FCLNIFFSVSVIESLMMVVASLVPNFLMGLITGAGIIGIIMMTSGFFRLLPDLPKVFWRY 553

Query:   418 PMSYITFAAWAIEPIMEDIF 437
             P+S++++ +WAI+   ++ F
Sbjct:   554 PISFMSYGSWAIQGAYKNDF 573

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0009651 "response to salt stress" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

TAIR|locus:2033939 ABCG13 "ATP-binding cassette G13" [Arabidopsis thaliana (taxid:3702)]

 Score = 1126 (401.4 bits), Expect = 3.5e-114, P = 3.5e-114
 Identities = 216/442 (48%), Positives = 302/442 (68%)

Query:     1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
             +T +EI+DIVE TI  MGL+ C++  IGNWHLRGIS GEKKRLSI++E+LT+P++L LDE
Sbjct:   120 LTREEISDIVEATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDE 179

Query:    61 PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDAK 120
             PTSGLDSASAFFV+Q+L+ IA  G+ VV SIHQPS             S GET+YFG+A+
Sbjct:   180 PTSGLDSASAFFVVQILRNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAE 239

Query:   121 MAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMY---- 176
              A KFF EAGFPCPSRRNPSDHFLRC+NSDFD V  + ++S+   +   S + Q++    
Sbjct:   240 SATKFFGEAGFPCPSRRNPSDHFLRCVNSDFDNVTAALVESRRINDSSFSLH-QLHETTN 298

Query:   177 -------LSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLSK-DRASWWKQLC 228
                    + T EI+  LV +++ S  +   R R++E+A      T   K  + +WWKQL 
Sbjct:   299 TLDPLDDIPTAEIRTTLVRKFKCSLYAAASRARIQEIASIVGIVTERKKGSQTNWWKQLR 358

Query:   229 ILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLI 288
             IL+ RSF+NM RD+GYYW+RI  Y+++SI VG ++ NVG ++  +     C  F+ GF+ 
Sbjct:   359 ILTQRSFINMSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMAGFMT 418

Query:   289 CLSVGGLPSFIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQF 348
              +S+GG  SFIEE K   RER++ HYG AV+ +SN LSS PF++++ +S+ +I  YMV+F
Sbjct:   419 FMSIGGFQSFIEEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYMVRF 478

Query:   349 HPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVS 408
               G SH+ + CL L C ++ VE+CMM++A +VPN LMG+ +G   I +M++ +  FR   
Sbjct:   479 QSGGSHFFYNCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFFRFFP 538

Query:   409 DLPKFFWQYPMSYITFAAWAIE 430
             DLP  FW+YP+SYI + AWA++
Sbjct:   539 DLPMVFWRYPVSYINYGAWALQ 560

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009651 "response to salt stress" evidence=IDA

GO:0080051 "cutin transport" evidence=IMP

GO:0080172 "petal epidermis patterning" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2030898 ABCG11 "ATP-binding cassette G11" [Arabidopsis thaliana (taxid:3702)]

 Score = 1122 (400.0 bits), Expect = 9.4e-114, P = 9.4e-114
 Identities = 216/432 (50%), Positives = 296/432 (68%)

Query:     1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
             M   E   +VE TII+MGLQ CA+T IGNWHLRGIS GEK+R+SI++EIL +P +L LDE
Sbjct:   159 MLRSEKRALVERTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDE 218

Query:    61 PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDAK 120
             PTSGLDSASAFFV Q L+ ++ DGR V+ SIHQPSS            S G+T+YFG A 
Sbjct:   219 PTSGLDSASAFFVTQTLRALSRDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQAS 278

Query:   121 MAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
              A +FFA+AGFPCP+ RNPSDHFLRCINSDFDKV  ++LK         S +    ++T 
Sbjct:   279 DAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVR-ATLKGSMKLRFEASDDPLEKITTA 337

Query:   181 EIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLSK--DRASWWKQLCILSHRSFLNM 238
             E    LV+ Y  S+     + +V E++  + + T+L     +AS+  Q   L+ RSF+NM
Sbjct:   338 EAIRLLVDYYHTSDYYYTAKAKVEEIS--QFKGTILDSGGSQASFLLQTYTLTKRSFINM 395

Query:   239 LRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSF 298
              RD GYYWLR++ Y+LV++ +G +YLNVG S  AI  R  C +F++GF+  +S+GG PSF
Sbjct:   396 SRDFGYYWLRLLIYILVTVCIGTIYLNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSF 455

Query:   299 IEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHF 358
             +E+ K   RER++ HYG A FV++N LS+ PFL++++  SGTI ++MV  HPGF+HY  F
Sbjct:   456 VEDMKVFQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFF 515

Query:   359 CLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYP 418
              L L+  V++VE+ MM +A +VPN LMG+ +G  +  + M+VS  FR  +D+PK FW+YP
Sbjct:   516 VLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPNDIPKPFWRYP 575

Query:   419 MSYITFAAWAIE 430
             MSYI+F  WA++
Sbjct:   576 MSYISFHFWALQ 587

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009611 "response to wounding" evidence=IDA

GO:0009651 "response to salt stress" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0015245 "fatty acid transporter activity" evidence=TAS

GO:0015908 "fatty acid transport" evidence=TAS

GO:0080051 "cutin transport" evidence=IMP

TAIR|locus:2046203 ABCG3 "ATP-binding cassette G3" [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 143/429 (33%), Positives = 239/429 (55%)

Query:     9 IVEETIIKMGLQACAETKIG-NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS 67
             +VE+ I  M L   A   IG + +++G+ SGE++R+SI+ E++ +P +L +DEP   LDS
Sbjct:   229 VVEDAIQAMSLSDYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDS 288

Query:    68 ASAFFVIQVLKCIALDGRIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFFA 127
              SA  ++  LK +A  G  +V +I+Q S+            SNG T++FG+    ++ F+
Sbjct:   289 VSALLMMVTLKKLASMGCTLVFTIYQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFS 348

Query:   128 EAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTEEIKAKLV 187
              AGFPCP  ++PSDHFLR IN+DFD++       Q       + N    ++   ++A   
Sbjct:   349 NAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKNWQDDNGDFSAVNMDTAVAIRTLEAT-- 406

Query:   188 EEYRNSEISMDIRQRVRELAHNEQEETVL-SKDRASWWKQLCILSHRSFLNMLRDMGYYW 246
               Y++S  +  +   + +L   E+E T L SK +A    ++ +L+ RS L M R+  YYW
Sbjct:   407 --YKSSADADSVEAMIIKLT--EREGTQLKSKGKAGAATRVAVLTWRSLLVMSREWKYYW 462

Query:   247 LRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASY 306
             LR++ Y+++++++G LY  +G S  ++  R   V     F   L + G+PS ++E K   
Sbjct:   463 LRLILYMILTLSIGTLYSGLGHSLSSVATRVAAVFVFVSFASLLGIAGIPSLLKEIKIYR 522

Query:   307 RERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCV 366
              E  + H G  VF+L  FL S PFL ++SISS  + ++MV     FS   +F L+ F C+
Sbjct:   523 SEASNQHSGAFVFLLGQFLGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCL 582

Query:   367 SIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAA 426
              + E  M+ +A +  +V        ++ V+MM+ +  FR  + LPK  W YP +YI+F  
Sbjct:   583 LVNEGLMLFIACIWRDVYWSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYISFHT 642

Query:   427 WAIEPIMED 435
             ++IE ++E+
Sbjct:   643 YSIEGLLEN 651

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

DICTYBASE|DDB_G0269214 abcG1 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 342 (125.4 bits), Expect = 2.7e-46, Sum P(2) = 2.7e-46
 Identities = 66/150 (44%), Positives = 100/150 (66%)

Query:    10 VEETIIKMGLQACAETKIGNWH--LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS 67
             V++ I +MGL  CA+T +G     +RGIS GE++R++ISIE+LT P+V+LLDEPTSGLD+
Sbjct:   237 VQDIIDEMGLNRCADTLVGTADNKIRGISGGERRRVTISIELLTGPSVILLDEPTSGLDA 296

Query:    68 ASAFFVIQVLKCIALDGRIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFFA 127
             +++F+V+  LK +A  GR ++C+IHQP S+            +G TIY+G A  A+++F 
Sbjct:   297 STSFYVMSALKKLAKSGRTIICTIHQPRSNIYDMFDNLLLLGDGNTIYYGKANKALEYFN 356

Query:   128 EAGFPCPSRRNPSDHFLRCINSDFDKVAGS 157
               G+ C  + NP+D FL  IN+  +  A S
Sbjct:   357 ANGYHCSEKTNPADFFLDLINTQVEDQADS 386

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0006810 "transport" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

WB|WBGene00015479 wht-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 128/426 (30%), Positives = 207/426 (48%)

Query:    10 VEETIIKMGLQACAETKIG--NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS 67
             VE+ + +MGL+ CA+T IG  N  L+G+S GEKKRLS + EILT P +L  DEPTSGLD+
Sbjct:   111 VEQVLTQMGLKKCADTVIGIPN-QLKGLSCGEKKRLSFASEILTCPKILFCDEPTSGLDA 169

Query:    68 ASAFFVIQVLKCIALDGRIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFFA 127
               A  V+Q L+ +A +G  V+ +IHQPSSH           + G  IY G    AV  F 
Sbjct:   170 FMAGHVVQALRSLADNGMTVIITIHQPSSHVYSLFNNVCLMACGRVIYLGPGDQAVPLFE 229

Query:   128 EAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTEEIKAKLV 187
             + G+PCP+  NP+DH +R + +  D    +S+K+       +S   Q +LST+  ++ L 
Sbjct:   230 KCGYPCPAYYNPADHLIRTL-AVIDSDRATSMKT-------ISKIRQGFLSTDLGQSVLA 281

Query:   188 EEYRNSEISMDIRQRVRELAHNEQEETVLSKD-RASWWKQLCILSHRSFLNMLRDMGYYW 246
                 N    +     V     +E+ +T  ++D  AS+W Q   L  RS+L ++RD     
Sbjct:   282 IGNANK---LRAASFVTGSDTSEKTKTFFNQDYNASFWTQFLALFWRSWLTVIRDPNLLS 338

Query:   247 LRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAF--IYGFLICLSVGGLPSFIEEHKA 304
             +R++  ++ +   GI++    ++ PA       + F  I      L    +P    E   
Sbjct:   339 VRLLQILITAFITGIVFFQTPVT-PATIISINGIMFNHIRNMNFMLQFPNVPVITAELPI 397

Query:   305 SYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFC 364
               RE  +  Y  + + L+  ++  P  +IL I   TI+++M   +P F +YC   L    
Sbjct:   398 VLRENANGVYRTSAYFLAKNIAELPQYIILPILYNTIVYWMSGLYPNFWNYCFASLVTIL 457

Query:   365 CVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFF-WQYPMSYIT 423
               ++  +    VA +  N  + M +    +V +M     F     +P +F W   +SY  
Sbjct:   458 ITNVAISISYAVATIFANTDVAMTILPIFVVPIMAFGGFFITFDAIPSYFKWLSSLSYFK 517

Query:   424 FAAWAI 429
             +   A+
Sbjct:   518 YGYEAL 523

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q11180 wht-1 "ABC transporter ATP-binding protein/permease wht-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 128/426 (30%), Positives = 207/426 (48%)

Query:    10 VEETIIKMGLQACAETKIG--NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS 67
             VE+ + +MGL+ CA+T IG  N  L+G+S GEKKRLS + EILT P +L  DEPTSGLD+
Sbjct:   111 VEQVLTQMGLKKCADTVIGIPN-QLKGLSCGEKKRLSFASEILTCPKILFCDEPTSGLDA 169

Query:    68 ASAFFVIQVLKCIALDGRIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFFA 127
               A  V+Q L+ +A +G  V+ +IHQPSSH           + G  IY G    AV  F 
Sbjct:   170 FMAGHVVQALRSLADNGMTVIITIHQPSSHVYSLFNNVCLMACGRVIYLGPGDQAVPLFE 229

Query:   128 EAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTEEIKAKLV 187
             + G+PCP+  NP+DH +R + +  D    +S+K+       +S   Q +LST+  ++ L 
Sbjct:   230 KCGYPCPAYYNPADHLIRTL-AVIDSDRATSMKT-------ISKIRQGFLSTDLGQSVLA 281

Query:   188 EEYRNSEISMDIRQRVRELAHNEQEETVLSKD-RASWWKQLCILSHRSFLNMLRDMGYYW 246
                 N    +     V     +E+ +T  ++D  AS+W Q   L  RS+L ++RD     
Sbjct:   282 IGNANK---LRAASFVTGSDTSEKTKTFFNQDYNASFWTQFLALFWRSWLTVIRDPNLLS 338

Query:   247 LRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAF--IYGFLICLSVGGLPSFIEEHKA 304
             +R++  ++ +   GI++    ++ PA       + F  I      L    +P    E   
Sbjct:   339 VRLLQILITAFITGIVFFQTPVT-PATIISINGIMFNHIRNMNFMLQFPNVPVITAELPI 397

Query:   305 SYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFC 364
               RE  +  Y  + + L+  ++  P  +IL I   TI+++M   +P F +YC   L    
Sbjct:   398 VLRENANGVYRTSAYFLAKNIAELPQYIILPILYNTIVYWMSGLYPNFWNYCFASLVTIL 457

Query:   365 CVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFF-WQYPMSYIT 423
               ++  +    VA +  N  + M +    +V +M     F     +P +F W   +SY  
Sbjct:   458 ITNVAISISYAVATIFANTDVAMTILPIFVVPIMAFGGFFITFDAIPSYFKWLSSLSYFK 517

Query:   424 FAAWAI 429
             +   A+
Sbjct:   518 YGYEAL 523

GO:0016246 "RNA interference" evidence=IMP

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0002254 orf19.3120 [Candida albicans (taxid:5476)]

 Score = 291 (107.5 bits), Expect = 5.4e-43, Sum P(2) = 5.4e-43
 Identities = 60/145 (41%), Positives = 90/145 (62%)

Query:     8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS 67
             ++V +TI  +GL+  A +KIG    +GIS G+K+R+SI+ +I+T P++L LDEPTSGLDS
Sbjct:   118 ELVSKTIKSLGLEGQAMSKIGTPIQKGISGGQKRRVSIASQIITSPSILFLDEPTSGLDS 177

Query:    68 ASAFFVIQVLKCIAL-DGRIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFF 126
              ++  VI  +K IA  +  +++CSIHQPS++           S G T+Y G     VK+F
Sbjct:   178 VASREVISTIKKIAKRENMVIICSIHQPSTYTFELFDKVMFLSKGRTVYNGAVSNVVKYF 237

Query:   127 AEAGFPCPSRRNPSDHFLRCINSDF 151
                G   P   NP+++ L  IN+DF
Sbjct:   238 NSIGHTMPPYINPAEYVLDLINTDF 262

GO:0005524 "ATP binding" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q5A0X6 CaO19.10632 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 291 (107.5 bits), Expect = 5.4e-43, Sum P(2) = 5.4e-43
 Identities = 60/145 (41%), Positives = 90/145 (62%)

Query:     8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS 67
             ++V +TI  +GL+  A +KIG    +GIS G+K+R+SI+ +I+T P++L LDEPTSGLDS
Sbjct:   118 ELVSKTIKSLGLEGQAMSKIGTPIQKGISGGQKRRVSIASQIITSPSILFLDEPTSGLDS 177

Query:    68 ASAFFVIQVLKCIAL-DGRIVVCSIHQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFF 126
              ++  VI  +K IA  +  +++CSIHQPS++           S G T+Y G     VK+F
Sbjct:   178 VASREVISTIKKIAKRENMVIICSIHQPSTYTFELFDKVMFLSKGRTVYNGAVSNVVKYF 237

Query:   127 AEAGFPCPSRRNPSDHFLRCINSDF 151
                G   P   NP+++ L  IN+DF
Sbjct:   238 NSIGHTMPPYINPAEYVLDLINTDF 262

GO:0005524 "ATP binding" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RWI9	AB15G_ARATH	No assigned EC number	0.5593	1.0	0.6324	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XVI000441 white-brown-complex ABC transporter family (687 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	437
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	4e-78
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	7e-47
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	3e-43
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	1e-41
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	4e-41
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	3e-37
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	6e-34
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	9e-26
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	3e-25
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	4e-22
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	2e-20
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	1e-19
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	4e-16
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	6e-16
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	2e-12
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	4e-12
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	6e-12
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	2e-11
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	3e-11
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	3e-11
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	4e-11
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	1e-10
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	2e-10
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	3e-10
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	1e-09
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	2e-09
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	2e-09
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	3e-09
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	3e-09
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	4e-09
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	4e-09
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	6e-09
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	1e-08
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	1e-08
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	1e-08
pfam00005	119	pfam00005, ABC_tran, ABC transporter	2e-08
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	3e-08
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	4e-08
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	5e-08
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	7e-08
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	1e-07
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	1e-07
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	2e-07
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	2e-07
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	2e-07
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	2e-07
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	3e-07
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	3e-07
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	4e-07
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	4e-07
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	4e-07
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	6e-07
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	6e-07
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	7e-07
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	7e-07
COG4598	256	COG4598, HisP, ABC-type histidine transport system	7e-07
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	8e-07
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	9e-07
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	9e-07
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	1e-06
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	1e-06
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	1e-06
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	1e-06
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	1e-06
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	1e-06
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	1e-06
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	1e-06
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	2e-06
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	2e-06
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	2e-06
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	2e-06
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	2e-06
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	2e-06
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	2e-06
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	2e-06
COG4988	559	COG4988, CydD, ABC-type transport system involved	2e-06
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	2e-06
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	2e-06
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	3e-06
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	3e-06
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	3e-06
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	3e-06
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	3e-06
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	4e-06
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	4e-06
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	5e-06
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	5e-06
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	5e-06
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	5e-06
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	6e-06
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	6e-06
COG4987	573	COG4987, CydC, ABC-type transport system involved	6e-06
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	6e-06
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	7e-06
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	8e-06
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	9e-06
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	9e-06
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	1e-05
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	1e-05
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	1e-05
COG4133	209	COG4133, CcmA, ABC-type transport system involved	1e-05
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	1e-05
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	1e-05
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	1e-05
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	1e-05
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	1e-05
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	1e-05
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	2e-05
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	2e-05
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	2e-05
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	2e-05
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	2e-05
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	2e-05
COG1123	539	COG1123, COG1123, ATPase components of various ABC	2e-05
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	2e-05
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	3e-05
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	3e-05
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	3e-05
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	3e-05
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	3e-05
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	3e-05
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	3e-05
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	4e-05
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	4e-05
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	4e-05
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	4e-05
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	5e-05
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	5e-05
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	5e-05
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	5e-05
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	6e-05
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	6e-05
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	6e-05
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	6e-05
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	6e-05
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	6e-05
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	7e-05
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	8e-05
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	9e-05
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	1e-04
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	1e-04
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	1e-04
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	1e-04
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	1e-04
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	1e-04
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	1e-04
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	1e-04
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	2e-04
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	2e-04
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	2e-04
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	2e-04
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	2e-04
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	2e-04
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	2e-04
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	3e-04
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	3e-04
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	3e-04
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	3e-04
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	3e-04
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	3e-04
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	3e-04
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	3e-04
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	3e-04
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	3e-04
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	3e-04
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	3e-04
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	3e-04
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	4e-04
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	4e-04
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	4e-04
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	4e-04
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	4e-04
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	4e-04
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	4e-04
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	5e-04
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	5e-04
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	5e-04
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	5e-04
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	5e-04
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	5e-04
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	6e-04
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	6e-04
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	6e-04
COG5265	497	COG5265, ATM1, ABC-type transport system involved	6e-04
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	7e-04
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	7e-04
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	7e-04
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	7e-04
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	8e-04
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	8e-04
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	8e-04
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	9e-04
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	9e-04
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	0.001
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	0.001
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	0.001
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	0.001
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	0.001
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	0.001
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	0.001
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	0.001
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	0.001
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	0.001
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	0.001
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	0.001
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	0.001
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	0.001
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	0.001
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	0.002
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	0.002
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	0.002
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	0.002
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	0.002
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	0.002
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	0.002
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	0.002
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	0.002
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	0.002
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	0.002
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	0.003
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	0.003
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	0.003
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	0.003
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	0.004
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	0.004
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	0.004
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	0.004
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	0.004
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	0.004
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	0.004

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score =  253 bits (649), Expect = 4e-78
 Identities = 131/458 (28%), Positives = 222/458 (48%), Gaps = 58/458 (12%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGN-WHLRGISSGEKKRLSISIEILTQPTVLLLD 59
           +T  E  + V+E +  +GL+ CA T+IG    ++G+S GE+KRL+ + E+LT P +L  D
Sbjct: 132 VTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCD 191

Query: 60  EPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119
           EPTSGLDS  A+ V+QVLK +A  G+ ++C+IHQPSS LF LFD ++L++ G   Y G  
Sbjct: 192 EPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSP 251

Query: 120 KMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLST 179
             AV FF++ G PCP   NP+D +++ +                   IP S N     S 
Sbjct: 252 DQAVPFFSDLGHPCPENYNPADFYVQVL-----------------AVIPGSENE----SR 290

Query: 180 EEIKAKLVEEYRNSEISMDIRQRVRELAHNEQ------EETVLSKDRASWWKQLCILSHR 233
           E I+ K+ + +  S+I  D+       +          E        ASWW Q   L  R
Sbjct: 291 ERIE-KICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKR 349

Query: 234 SFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFL------ 287
           S+L++LRD     +R++  ++ +I +G++YL  GL+   +         ++ FL      
Sbjct: 350 SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNIN---GALFLFLTNMTFQ 406

Query: 288 -----ICLSVGGLPSFIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTIL 342
                I +    LP F+ E   S   R+S ++      L+  ++  P  +IL     +I 
Sbjct: 407 NVFPVINVFTAELPVFLRET-RSGLYRVSAYF------LAKTIAELPLFIILPALFTSIT 459

Query: 343 HYMVQFHPGFSHYCHFCLSLFCC--VSIVET-CMMVVALLVPNVLMGMGVGTALIVLMMM 399
           ++M+    G +   HF   LF    V+ V T    +++    +  M + VG   ++  ++
Sbjct: 460 YWMIGLRSGAT---HFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLL 516

Query: 400 VSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF 437
               F     +P +F    +SY+++  +  E ++ + +
Sbjct: 517 FGGFFINSDSIPVYFKW--LSYLSWFRYGNEGLLINQW 552

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score =  172 bits (439), Expect = 7e-47
 Identities = 102/418 (24%), Positives = 182/418 (43%), Gaps = 20/418 (4%)

Query: 18  GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVL 77
           GL     TK+GN  +RG+S GE+KR+SI+   L    +   D  T GLDSA+A   I+ L
Sbjct: 193 GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL 252

Query: 78  KCIA--LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPS 135
           K  A  LD   +V +I+Q S   + LFD +++L  G  IYFG A  A ++F + GF CP 
Sbjct: 253 KTSANILDTTPLV-AIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPD 311

Query: 136 RRNPSDHFLRCINSDFDKV--AGSSLKS-QAPTEIPMSSNSQMYLSTEEIKA--KLVEEY 190
           R+  +D FL  + S  ++    G   K  + P E         + ++ E     K ++EY
Sbjct: 312 RQTTAD-FLTSLTSPAERQIKPGYEKKVPRTPQEF-----ETYWRNSPEYAQLMKEIDEY 365

Query: 191 RNSEISMDIRQRVRELAHNEQEETVL--SKDRASWWKQLCILSHRSFLNMLRDMGYYWLR 248
            +     D ++  RE    +Q +     S    S+  Q+     R+FL M  +  +    
Sbjct: 366 LDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFM 425

Query: 249 IVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASYRE 308
           +   +++++ +  ++ N+  +    Y R   + F   F    S+  + S  E      + 
Sbjct: 426 VFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKH 485

Query: 309 RISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSI 368
           R    Y  +   +++ +S  PF +I S+    IL++MV F      +  + L LF C   
Sbjct: 486 RKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLA 545

Query: 369 VETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFF----WQYPMSYI 422
           +      +  +   +   M     L++ + + +        +  +     +  P++Y 
Sbjct: 546 MSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYA 603

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score =  162 bits (412), Expect = 3e-43
 Identities = 114/451 (25%), Positives = 199/451 (44%), Gaps = 63/451 (13%)

Query: 5    EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLL-LDEPTS 63
            E  + VEE I  + +++ A+  +G     G++  ++KRL+I +E++ +P +LL LDEPTS
Sbjct: 873  EKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTS 931

Query: 64   GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG-ETIYFGD---- 118
            GLDS +A+ + ++++ +A  G+ ++C+IHQPS+ LF  FD LLLL  G +T+YFGD    
Sbjct: 932  GLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGEN 991

Query: 119  AKMAVKFFAEAGFP-CPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYL 177
            +   + +F + G P CP   NP++  L  I               AP     +  +Q Y 
Sbjct: 992  SHTIINYFEKHGAPKCPEDANPAEWMLEVI-------------GAAPG----AHANQDYH 1034

Query: 178  STEEIKAKLVEEYRNSEISMDIRQRVREL------AHNEQEETVLSKDRASWWKQLCILS 231
                      E +RNS     ++  +  L      A ++ +   LSK  AS W Q  ++ 
Sbjct: 1035 ----------EVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVL 1084

Query: 232  HRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLS 291
             R+F    R   Y + +    +  ++ +G  +  VG S   + G    +  ++   +  +
Sbjct: 1085 WRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTS---LQGLQNQMFAVFMATVLFN 1141

Query: 292  V---GGLPSFIEEHKASY--RERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMV 346
                  LP F+   +  Y  RER S  +    F+ +      P+ ++       I +Y V
Sbjct: 1142 PLIQQYLPPFV-AQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPV 1200

Query: 347  QF-----HPGFSHYCHFCLSLFCCVSIVETC---MMVVALLVPNVLMGMGVGTALIVLMM 398
             F       G  H       L   +  +       MV++   PN      + + L  + +
Sbjct: 1201 GFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFN-PNADNAAVLASLLFTMCL 1259

Query: 399  MVSPVFRGVSDLPKFF-WQY---PMSYITFA 425
                V    S +P F+ + Y   P +Y+  A
Sbjct: 1260 SFCGVLAPPSRMPGFWIFMYRCSPFTYLVQA 1290

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score =  155 bits (394), Expect = 1e-41
 Identities = 106/404 (26%), Positives = 184/404 (45%), Gaps = 38/404 (9%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           +T  E   + E  I ++GL  C  T IGN  +RGIS GE+KR+SI+ E+L  P++L+LDE
Sbjct: 173 LTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 232

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           PTSGLD+ +A+ ++  L  +A  G+ +V S+HQPSS ++ +FD +L+LS G  ++FG   
Sbjct: 233 PTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGS 292

Query: 121 MAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
            A+ +F   GF      NP+D  L   N    +  G S + +   +  + +      S  
Sbjct: 293 DAMAYFESVGFSPSFPMNPADFLLDLANG-VCQTDGVSEREKPNVKQSLVA------SYN 345

Query: 181 EIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLSKDRASWWKQLCILSHRSFLNMLR 240
            + A  V+             R    A  ++  +      ++W+ Q  IL  RS L   +
Sbjct: 346 TLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRS-LKERK 404

Query: 241 DMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPS--- 297
              +  LR+   +  ++  G+++ +    +  +  R   + FI  F      G  PS   
Sbjct: 405 HESFNTLRVFQVIAAALLAGLMWWHSDFRD--VQDRLGLLFFISIFW-----GVFPSFNS 457

Query: 298 ---FIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSH 354
              F +E     +ER S  Y  + + ++  +   P  +IL     T+ ++M    P    
Sbjct: 458 VFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGA 517

Query: 355 YCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMM 398
           +                 ++ + +L+  VL+  G+G AL   +M
Sbjct: 518 F-----------------LLTLLVLLGYVLVSQGLGLALGAAIM 544

Length = 659

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score =  144 bits (365), Expect = 4e-41
 Identities = 52/87 (59%), Positives = 70/87 (80%)

Query: 31  HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCS 90
            LRG+S GE+KR+SI++E+++ P++L LDEPTSGLDS+SA  V+ +L+ +A  GR ++CS
Sbjct: 108 KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICS 167

Query: 91  IHQPSSHLFYLFDDLLLLSNGETIYFG 117
           IHQPSS +F LFD LLLLS G  IYFG
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score =  135 bits (341), Expect = 3e-37
 Identities = 51/101 (50%), Positives = 73/101 (72%)

Query: 17  MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQV 76
           + L+  A T+IG   ++GIS GE++R+SI++++L  P VL+LDEPTSGLDS +A  ++  
Sbjct: 126 VLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVST 185

Query: 77  LKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
           L  +A   RIV+ +IHQP S LF LFD +LLLS+GE +Y G
Sbjct: 186 LSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score =  125 bits (316), Expect = 6e-34
 Identities = 44/87 (50%), Positives = 67/87 (77%), Gaps = 1/87 (1%)

Query: 32  LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSI 91
           LRG+S  ++KRL+I +E+  +P++L LDEPTSGLDS +A+ +++ LK +A  G+ ++C+I
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTI 165

Query: 92  HQPSSHLFYLFDDLLLL-SNGETIYFG 117
           HQPS+ +F  FD LLLL   G+T+YFG
Sbjct: 166 HQPSASIFEKFDRLLLLKRGGKTVYFG 192

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score =  110 bits (276), Expect = 9e-26
 Identities = 102/412 (24%), Positives = 178/412 (43%), Gaps = 47/412 (11%)

Query: 34   GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
            G+S+ ++KRL+I++E++  P+++ +DEPTSGLD+ +A  V++ ++     GR VVC+IHQ
Sbjct: 1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1078

Query: 94   PSSHLFYLFDDLLLLS-NGETIYFG-----DAKMAVKFFAEAGFP-CPSRRNPSDHFLRC 146
            PS  +F  FD+LLL+   G+ IY G       K+   F A  G P    + NP+   L  
Sbjct: 1079 PSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEV 1138

Query: 147  INSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVREL 206
                      SSL ++    I  +                 E Y++S +    +  V+EL
Sbjct: 1139 ----------SSLAAEVKLGIDFA-----------------EHYKSSSLYQRNKALVKEL 1171

Query: 207  AHNEQEETVL---SKDRASWWKQLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILY 263
            +      + L   ++   S W Q      + +    R   Y  +R  F +  ++ VG ++
Sbjct: 1172 STPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIF 1231

Query: 264  LNVGLSNPAIYGRPKCVAFIYGFLICLSVGGL----PSFIEEHKASYRERISCHYGEAVF 319
              VG            +  +Y  ++ + +       P    E    YRER +  Y    +
Sbjct: 1232 WKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPY 1291

Query: 320  VLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFC-LSLFCCVSIVETCMMVVAL 378
             ++  +   P+++I +     I++ MV F    + +  F  +S F  +      MM V+ 
Sbjct: 1292 AIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVS- 1350

Query: 379  LVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFF-WQYPMSYITFAAWAI 429
            L PN  +      A   L  + S  F     +PK++ W Y   +I   AW +
Sbjct: 1351 LTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYY---WICPVAWTV 1399

Length = 1470

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score =  109 bits (273), Expect = 3e-25
 Identities = 111/451 (24%), Positives = 204/451 (45%), Gaps = 49/451 (10%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPT-VLLLD 59
           M   + + I + T+  +GL  C +T +G+  +RGIS G+KKR++   E++  PT  L +D
Sbjct: 303 MEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG-EMIVGPTKTLFMD 361

Query: 60  EPTSGLDSASAFFVIQVLKC----IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIY 115
           E ++GLDS++ +   Q++KC    + L    V+ S+ QP+   F LFDD++LLS G+ +Y
Sbjct: 362 EISTGLDSSTTY---QIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVY 418

Query: 116 FGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEIPMSSNSQM 175
            G     ++FF   GF CP R+  +D FL+ + S  D+      +  A    P       
Sbjct: 419 QGPRDHILEFFESCGFKCPERKGTAD-FLQEVTSKKDQE-----QYWADRNKPYR----- 467

Query: 176 YLSTEEIKAKLVEEYRNSEISMDIRQRVR---ELAHNEQEETVLSKDRASWWKQLCILSH 232
           Y+S  E      E +++  + M +   +    + + + +   V SK      + L     
Sbjct: 468 YISVSE----FAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWD 523

Query: 233 RSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGL-----SNPAIYGRPKCVAFIY--- 284
           + +L M R+   Y  + V  ++V+     ++L   +      + A+Y      + I    
Sbjct: 524 KEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMF 583

Query: 285 -GFL-ICLSVGGLPSFIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTIL 342
            GF  + L +  LP F       Y++R    +    F L  FL   P  +I S+    I 
Sbjct: 584 NGFAELALMIQRLPVF-------YKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVIT 636

Query: 343 HYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSP 402
           +Y + F P  S +    L +F    +      ++A +   +++    G  +++L+ ++  
Sbjct: 637 YYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGG 696

Query: 403 VFRGVSDLPKF----FWQYPMSYITFAAWAI 429
                 ++P +    +W  P+SY  F A A+
Sbjct: 697 FILPKGEIPNWWEWAYWVSPLSY-GFNALAV 726

Length = 1470

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 93.5 bits (233), Expect = 4e-22
 Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 9/110 (8%)

Query: 10  VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           V ET+    L+       GN  +RGIS GE+KR+SI+  ++++ +VL  D  T GLDS++
Sbjct: 100 VRETL-DFALRCK-----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST 153

Query: 70  AFFVIQVLKCIA--LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
           A  +++ ++ +A  L     V S++Q S  ++ LFD +L+L  G  IY+G
Sbjct: 154 ALEILKCIRTMADVLKTTTFV-SLYQASDEIYDLFDKVLVLYEGRQIYYG 202

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 90.4 bits (225), Expect = 2e-20
 Identities = 41/132 (31%), Positives = 72/132 (54%), Gaps = 7/132 (5%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           ++ +E  + +EE +   GL+  A  K+     R +S G K+RLSI++ +L  P +L+LDE
Sbjct: 108 LSKEEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDE 162

Query: 61  PTSGLDSASAFFVIQVLKCIALDG-RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119
           PTSGLD  S   + ++L+ +A +G   ++ S H        L D +++L++G+ I  G  
Sbjct: 163 PTSGLDPESRREIWELLRELAKEGGVTILLSTHILEE-AEELCDRVIILNDGKIIAEGTP 221

Query: 120 KMAVKFFAEAGF 131
           +   + F   G 
Sbjct: 222 EELKEKFGGKGV 233

Length = 293

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score = 86.5 bits (215), Expect = 1e-19
 Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 7/214 (3%)

Query: 226 QLCILSHRSFLNMLRDMGY-YWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIY 284
           QL  L  R FL   RD       R++  +L+++  G ++ N+  S   +  RP  + F  
Sbjct: 2   QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLN-RPGLLFFSI 60

Query: 285 GFLICLSVGGL-PSFIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILH 343
            F    S+ G+ P FI E     RE  S  Y  + +VL+  L   P  ++ +I    I++
Sbjct: 61  LFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVY 120

Query: 344 YMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPV 403
           +MV      S +  F L L           + +A L P+      +G  L++ ++++S  
Sbjct: 121 FMVGLPV--SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGF 178

Query: 404 FRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF 437
           F  V  +P   W   + Y+    +AIE +  + F
Sbjct: 179 FIPVDSMPG--WLQWIYYLNPLTYAIEALRANEF 210

Length = 210

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 75.0 bits (185), Expect = 4e-16
 Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 1/78 (1%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           +S G+++R++++  +L  P +LLLDEPTSGLD AS   ++++L+ +A +GR V+   H P
Sbjct: 81  LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140

Query: 95  SSHLFYLFDDLLLLSNGE 112
                   D +++L +G+
Sbjct: 141 -ELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 76.0 bits (188), Expect = 6e-16
 Identities = 34/112 (30%), Positives = 63/112 (56%), Gaps = 6/112 (5%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           +  +EI + VEE +  +GL+   +       L   S G+K+R++I+  +   P +LLLDE
Sbjct: 106 LPEEEIEERVEEALELVGLEGLRDRSPF--TL---SGGQKQRVAIAGVLAMDPDILLLDE 160

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112
           PT+GLD A    ++++LK +  +G+ ++   H     L  L D +++L +G+
Sbjct: 161 PTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 5/115 (4%)

Query: 3   NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPT 62
           N E    V+E +  +GL       + N +   +S GEK+R++++  +  QP +LLLDEP 
Sbjct: 105 NREDRISVDELLDLLGLD-----HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPF 159

Query: 63  SGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
           S LD A    ++  LK I  +  I V  +    S   YL D ++++ +G   Y G
Sbjct: 160 SALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 13/125 (10%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
           +EI + V E +  +GL+   +          +S G+K+R++I+  +   P +LLLDEPT+
Sbjct: 113 EEIEERVAEALELVGLEELLD-----RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTA 167

Query: 64  GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH----LFYLFDDLLLLSNGETIYFGDA 119
           GLD      ++++LK +  +G   +  +    +H    +    D +++L +G+ +  GD 
Sbjct: 168 GLDPKGRRELLELLKKLKEEGGKTIIIV----THDLELVLEYADRVVVLDDGKILADGDP 223

Query: 120 KMAVK 124
                
Sbjct: 224 AEIFN 228

Length = 235

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 63.6 bits (156), Expect = 6e-12
 Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 9/105 (8%)

Query: 19  LQACAETKIGNWHLRG-----ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFV 73
            QA     +   HL       +S GE++R+ ++  +  +P +LLLDEPTS LD A    +
Sbjct: 79  PQALELLGLA--HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIEL 136

Query: 74  IQVLKCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
           +++L+ +A + G+ VV  +H   +      D ++LL +G  +  G
Sbjct: 137 LELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 3   NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPT 62
             EI + VE  +  +GL   A  +        +S G K++LS++I ++  P+VLLLDEPT
Sbjct: 107 KSEIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIGGPSVLLLDEPT 161

Query: 63  SGLDSAS 69
           SGLD AS
Sbjct: 162 SGLDPAS 168

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 61.6 bits (151), Expect = 3e-11
 Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 9/81 (11%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95
           S G K+RL+++  +L  P +L+LDEPTSGLD  S     ++L+ +  +G+ ++      S
Sbjct: 97  SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILL-----S 151

Query: 96  SHLFY----LFDDLLLLSNGE 112
           SH+      L D + +L+NG 
Sbjct: 152 SHILEEAERLCDRVAILNNGR 172

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 6/111 (5%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
           D  N+  E  +  + L A  E      H   +S G+K+RL+I+  +L+   +L+ DEPTS
Sbjct: 101 DAGNEQAETVLKDLDLYALKE-----RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTS 155

Query: 64  GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETI 114
           GLD  +   V ++++ +A  G+ V+   H     L  + D +LLL+NG  +
Sbjct: 156 GLDYKNMERVGELIRELAAQGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 29/110 (26%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 8   DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS 67
             V+E + ++GL   A+ +IG      +S G+++R+ ++  ++  P +LLLDEP +G+D 
Sbjct: 111 AKVDEALERVGLSELADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDP 165

Query: 68  ASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
            +   + ++L+ +  +G  ++   H     +   FD +LLL N   +  G
Sbjct: 166 KTQEDIYELLRELRREGMTILVVTHDLGL-VLEYFDRVLLL-NRTVVASG 213

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
            E+   V E +  +G     E      H   +S GEKKR++I+  +  +P VLLLDEPT+
Sbjct: 102 AEVERRVREALTAVGASGLRERPT---HC--LSGGEKKRVAIAGAVAMRPDVLLLDEPTA 156

Query: 64  GLDSASAFFVIQVLKCIALDGRIVVCSIH 92
           GLD A    ++ +L+ +  +G  VV S H
Sbjct: 157 GLDPAGREQMLAILRRLRAEGMTVVISTH 185

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI-ALDGRIVVCSIH 92
           G+S G+++R++++  +   P VLLLDEPTS LD  +   V  +LK + A  G  VV   H
Sbjct: 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159

Query: 93  QPSSHLFYLFDDLLLLSNGE 112
                   L D +++L +G+
Sbjct: 160 DLDE-AARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 59.9 bits (146), Expect = 3e-10
 Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQP 94
           S G+++R++I+  ++ QP ++L DEP + LD AS+  V+ +LK I   +G  V+ S+HQ 
Sbjct: 146 SGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV 205

Query: 95  SSHLFYLFDDLLLLSNGETIYFGDA 119
                Y  D ++ L +G  ++ G  
Sbjct: 206 DLAREY-ADRIVGLKDGRIVFDGPP 229

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
           E  +  +E + K+GL    + KI       +S GE++R++++  IL  P ++L DEPT  
Sbjct: 110 EKREKKKEALEKVGLNLKLKQKIYE-----LSGGEQQRVALARAILKPPPLILADEPTGS 164

Query: 65  LDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           LD  +   V+ +L  +  +G+ ++   H P
Sbjct: 165 LDPKNRDEVLDLLLELNDEGKTIIIVTHDP 194

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 11/106 (10%)

Query: 10  VEETIIKMGLQACA-------ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPT 62
           + E + + GL           +T IG     G+S G+ +RL+++   L    +LLLDEPT
Sbjct: 428 IREALERAGLDEFVAALPQGLDTPIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPT 486

Query: 63  SGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL 108
           + LD+ +   V++ L+ +A  GR V+   H+    L  L D +++L
Sbjct: 487 AHLDAETEAEVLEALRALA-QGRTVLLVTHRL--ALAALADRIVVL 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 7/114 (6%)

Query: 8   DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS 67
           +IVEE +  +GL+  A+  +       +S GE++R+ I+  +  +  +LLLDEPTS LD 
Sbjct: 117 EIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIARALAQETPILLLDEPTSHLDI 171

Query: 68  ASAFFVIQVLKCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           A    V+++L+ +  + G  VV  +H   +      D L+LL +G+ +  G  +
Sbjct: 172 AHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPE 224

Length = 258

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 56.4 bits (137), Expect = 3e-09
 Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 7/108 (6%)

Query: 10  VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           V+E +  + L   A+ KIG      +S G ++R+ I+  ++  P++L++DEPT+GLD   
Sbjct: 111 VDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165

Query: 70  AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
                 +L  +  D RIV+ S H     +  L + + +L+ G+ ++ G
Sbjct: 166 RIRFRNLLSELGED-RIVILSTHI-VEDVESLCNQVAVLNKGKLVFEG 211

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 56.7 bits (137), Expect = 3e-09
 Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 6/117 (5%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           ++  EI   + E   ++ L    + ++G       S+G K++++I+  ++  P++L+LDE
Sbjct: 105 LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDE 159

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
           PTSGLD  +       +K +  +GR V+ S H     +  L D +++L  GE +  G
Sbjct: 160 PTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI-MQEVEALCDRVIVLHKGEVVLEG 215

Length = 245

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 56.7 bits (138), Expect = 4e-09
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
            E  +  EE + ++GL   A+   G      +S G+++RL I+  + T P +LLLDEP +
Sbjct: 118 REARERAEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAA 172

Query: 64  GLDSASAFFVIQVLKCIALDGRIVV 88
           GL+      + ++++ +   G  V+
Sbjct: 173 GLNPEETEELAELIRELRERGITVL 197

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 17/150 (11%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           ++  E   IVEE I  +GL   A+ + G      +S G K+R++I+  +  +P VLLLDE
Sbjct: 86  LSKSERRAIVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLLDE 140

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           P   LD+ +   + + L  I  + R+ V  +         L D +++L+NG     G   
Sbjct: 141 PFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQ-- 198

Query: 121 MAVKFFAEAGFPCPSRR-----NPSDHFLR 145
                  E  FP P  R     +PS + LR
Sbjct: 199 -----ILEVPFPRPRDRLEVVEDPSYYDLR 223

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 56.1 bits (136), Expect = 6e-09
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 7/98 (7%)

Query: 26  KIGNWHLRG-----ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80
           ++G   LR      +S G+K+R+ ++  +   P +LLLDEP +G+D A    +  +LK +
Sbjct: 126 RVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL 185

Query: 81  ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD 118
             +G+ V+   H     +   FD ++ L N   I  G 
Sbjct: 186 RQEGKTVLMVTHDL-GLVMAYFDRVICL-NRHLIASGP 221

Length = 254

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 31/117 (26%), Positives = 65/117 (55%), Gaps = 6/117 (5%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           +  DE+   +EE   ++G++   + ++G     G S+G +++++I+  ++  P VLLLDE
Sbjct: 108 LKGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDE 162

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
           PT+GLD  +   + + ++ +   G+ ++ S H     +  L D +++L  G  +Y G
Sbjct: 163 PTTGLDVMATRALREFIRQLRALGKCILFSTHI-MQEVERLCDRVVVLHRGRVVYEG 218

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           +S G+KKR++I+  ++ Q   LLLDEPT+GLD A    +I +++ I   G  V+ S H  
Sbjct: 137 LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHD- 195

Query: 95  SSHLFYLFDDLLLLSNGETIYFGD 118
              ++ + D + +L  G+ +  G 
Sbjct: 196 IDLIYEISDAVYVLRQGQILTHGA 219

Length = 271

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 9/120 (7%)

Query: 3   NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPT 62
            +E+++ VEE + K  L    + ++   H  G+S G+++RL ++  +  +P VLLLDEPT
Sbjct: 113 KEELDERVEEALRKAALWDEVKDRL---HALGLSGGQQQRLCLARALANEPEVLLLDEPT 169

Query: 63  SGLDSASAFFVIQVLKCIALDGRIVVCS--IHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           S LD  S   + +++  +  +  IV+ +  + Q +     + D    L NG  + FG  +
Sbjct: 170 SALDPISTAKIEELIAELKKEYTIVIVTHNMQQAAR----VADRTAFLLNGRLVEFGPTE 225

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           + + E +   EE + ++GL    + +        +S G+K+R++I+  +L +P +LLLDE
Sbjct: 61  LRDKEADARAEEALERVGLPDFLDREPV----GTLSGGQKQRVAIARALLKKPKLLLLDE 116

Query: 61  PTS 63
           PT+
Sbjct: 117 PTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 2/84 (2%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQ 93
           +S G+++R++I+  +  QP ++L DEP + LD  ++  V+  LK I   DG  V+ ++HQ
Sbjct: 146 LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ 205

Query: 94  PSSHLFYLFDDLLLLSNGETIYFG 117
                 Y  D ++ L  GE ++ G
Sbjct: 206 VDLAKKYA-DRIVGLKAGEIVFDG 228

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 6/117 (5%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
           +E+   V+E +  +G++          HL G   G+KKR++I+  +  +P +++LDEPTS
Sbjct: 112 EEVEKRVKEALKAVGMEGFENKP--PHHLSG---GQKKRVAIAGILAMKPEIIVLDEPTS 166

Query: 64  GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           GLD   A  ++++L  +  +G  ++ S H       Y  D + ++S+G+ I  G  K
Sbjct: 167 GLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYA-DKVYVMSDGKIIKEGTPK 222

Length = 275

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 25/79 (31%), Positives = 49/79 (62%), Gaps = 3/79 (3%)

Query: 33  RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92
           RG+S G+++ ++++  +L  P +LLLDEPTS +D  S   + + L+ + L  + ++   H
Sbjct: 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL-LGDKTLIIITH 197

Query: 93  QPSSHLFYLFDDLLLLSNG 111
           +PS  L  L D ++++ +G
Sbjct: 198 RPS--LLDLVDRIIVMDSG 214

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 53.6 bits (129), Expect = 7e-08
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           M    +   VEE I  +GL+     KIG      +S G ++R+ ++  ++  P VL+LDE
Sbjct: 105 MKGQLLKQRVEEMIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKVLILDE 159

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92
           PT+GLD      +  V+K I  D + ++ S H
Sbjct: 160 PTTGLDPNQLVEIRNVIKNIGKD-KTIILSTH 190

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 50.8 bits (123), Expect = 1e-07
 Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 3/78 (3%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           +S G+++R++I+  +L  P +L+LDE TS LD  +   +++ L+ +A  G+ V+   H+ 
Sbjct: 97  LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRL 155

Query: 95  SSHLFYLFDDLLLLSNGE 112
           S+      D +++L +G 
Sbjct: 156 STIR--DADRIIVLDDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 53.3 bits (129), Expect = 1e-07
 Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 33  RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92
           R +S G+++ ++++  +L  P +LLLDEPTS +D+ S       LK   L G+ +V   H
Sbjct: 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR-WLAGKTLVLVTH 658

Query: 93  QPSSHLFYLFDDLLLLSNG 111
           + S  L  L D ++++ NG
Sbjct: 659 RTS--LLDLVDRIIVMDNG 675

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 7/119 (5%)

Query: 2   TNDEINDIVEETIIK---MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLL 58
           T++EI + ++          L    +T +G      +S G+++RL+I+  +L  P +L+L
Sbjct: 431 TDEEIEEALKLANAHEFIANLPDGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILIL 489

Query: 59  DEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
           DE TS LD+ +   +   LK + L GR  +   H+ S+      D +++L NG  +  G
Sbjct: 490 DEATSALDTETEALIQDALKKL-LKGRTTLIIAHRLSTIKNA--DRIIVLDNGRIVERG 545

Length = 567

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 36/115 (31%), Positives = 65/115 (56%), Gaps = 3/115 (2%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
           EI  IVEE + K+GL      ++ N     +S G+++RL+I+  +  +P VLL+DEPTS 
Sbjct: 125 EIKKIVEECLRKVGLWKEVYDRL-NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSM 183

Query: 65  LDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119
           +D  ++  + +++  +  +  IV+ S H P   +  + D +  L NGE + +G +
Sbjct: 184 IDIVNSQAIEKLITELKNEIAIVIVS-HNP-QQVARVADYVAFLYNGELVEWGSS 236

Length = 257

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 22/59 (37%), Positives = 37/59 (62%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92
            +S GE++R++I+  I+  PT+L+ DEPT  LD  + + ++ +LK I   G  VV + H
Sbjct: 136 ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATH 194

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
            E  +   E +  +GL   A+   GN     +S G+++RL I+  + TQP +LLLDEP +
Sbjct: 124 REARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAA 178

Query: 64  GL 65
           GL
Sbjct: 179 GL 180

Length = 250

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 6/109 (5%)

Query: 7   NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
              ++E +  +GL+  A+ K+  +     S G K+RL I++ +L  P +L+LDEPT+GLD
Sbjct: 104 KKRIDEVLDVVGLKDSAKKKVKGF-----SLGMKQRLGIALALLGNPDLLILDEPTNGLD 158

Query: 67  SASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIY 115
                 + +++  +   G  V+ S H   S +  + D + +++ G+ I 
Sbjct: 159 PDGIKELRELILSLRDQGITVLISSHL-LSEIQKVADRIGIINKGKLIE 206

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 19/77 (24%)

Query: 3   NDEINDIVEETIIKMGLQACAETKIGNWHL---------RGISSGEKKRLSISIEILTQP 53
           + E+++IVE ++ K  L          W            G+S G+++RL I+  +  +P
Sbjct: 119 DKELDEIVESSLKKAAL----------WDEVKDRLHKSALGLSGGQQQRLCIARALAVKP 168

Query: 54  TVLLLDEPTSGLDSASA 70
            VLL+DEPTS LD  S 
Sbjct: 169 EVLLMDEPTSALDPIST 185

Length = 253

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 7/76 (9%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSI-HQP 94
           S GE++RL+ +  +L +P  + LDE TS LD  S   + Q+LK    +  I V S+ H+P
Sbjct: 93  SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK----ELGITVISVGHRP 148

Query: 95  SSHLFYLFDDLLLLSN 110
           S  L+   D +L L  
Sbjct: 149 S--LWKFHDRVLDLDG 162

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 23/85 (27%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
           G+S G+K+R++I+  +  QP +L+ DEPT+GLD      ++Q++     + + V    H 
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235

Query: 94  PSSHLFYLFDDLLLLSNGETIYFGD 118
              H+  + D+++++  G+ +  G 
Sbjct: 236 -MEHVLEVADEVIVMDKGKILKTGT 259

Length = 320

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 6/117 (5%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           +  +E    ++E + ++ L   A  ++       +S G ++++     ++  P +L+LDE
Sbjct: 100 LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDE 154

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
           P SGLD  +   +  V++ +A  G+ V+ S HQ    +  L D +LLL+ G  + +G
Sbjct: 155 PFSGLDPVNVELLKDVIRELARAGKTVILSTHQ-MELVEELCDRVLLLNKGRAVLYG 210

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.3 bits (120), Expect = 6e-07
 Identities = 34/117 (29%), Positives = 61/117 (52%), Gaps = 7/117 (5%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
           E++ IVE  + K  L    +  +    L  +S G+++RL I+  I  +P V+L+DEPTS 
Sbjct: 119 ELDKIVEWALKKAALWDEVKDDLKKSAL-KLSGGQQQRLCIARTIAVKPDVILMDEPTSA 177

Query: 65  LDSASAFFVIQVLKCIALDGRIVVCSIH-QPSSHL-----FYLFDDLLLLSNGETIY 115
           LD  S   +  ++  +  +  IV+ + + Q +S +     F+L  DL+  +  E I+
Sbjct: 178 LDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234

Length = 251

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 48.2 bits (116), Expect = 6e-07
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 25  TKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLK 78
            KIG  +   +S GEK RL+++  +L  P +LLLDEPT+ LD  S   + + LK
Sbjct: 63  VKIG--YFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALK 114

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 6/110 (5%)

Query: 9   IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA 68
           +V+  + +  L   A+  +       +S GE++R+ ++  +  +P +LLLDEPT+ LD  
Sbjct: 117 VVDRALARTELSHLADRDMST-----LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVR 171

Query: 69  SAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD 118
           +    + +++ +A  G  VV ++H  +    Y  D +++L  G  +  G 
Sbjct: 172 AQLETLALVRELAATGVTVVAALHDLNLAASYC-DHVVVLDGGRVVAAGP 220

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 49.1 bits (118), Expect = 7e-07
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 13/89 (14%)

Query: 10  VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           +   +  +GL   A    G      +S+G+K+R++++  +++   + +LDEPT+ LD+A+
Sbjct: 108 IAAALEAVGLAPLAHLPFGY-----LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAA 162

Query: 70  -AFF--VIQV-LKCIALDGRIVVCSIHQP 94
            A F  +I+  L      G IV+ + H P
Sbjct: 163 VALFAELIRAHLA----QGGIVIAATHIP 187

Length = 207

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 6/73 (8%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH-- 92
           +S G+++R++I+  +  +P V+L DEPTS LD      V++V++ +A +GR +V   H  
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM 212

Query: 93  ----QPSSHLFYL 101
                 SSH+ +L
Sbjct: 213 GFARDVSSHVIFL 225

Length = 256

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.9 bits (119), Expect = 8e-07
 Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 3/119 (2%)

Query: 6   INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGL 65
           ++ IVEE++ K  L    ++++ N     +S G+++RL I+  +  +P V+LLDEPTS L
Sbjct: 119 LDRIVEESLKKAALWDEVKSEL-NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSAL 177

Query: 66  DSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124
           D  +   + ++L+ ++ +  IV+ + H     +  + D +  +  GE I +G  +  V+
Sbjct: 178 DPIATQRIEKLLEELSENYTIVIVT-HNIGQAI-RIADYIAFMYRGELIEYGPTREIVE 234

Length = 250

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 49.6 bits (118), Expect = 9e-07
 Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 20/132 (15%)

Query: 23  AETKIGNWH-----LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVL 77
           A T++G  H     +  +S G+++R++I+  ++ Q  V+L DEP + LD  SA  V+  L
Sbjct: 136 ALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTL 195

Query: 78  KCI-ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSR 136
           + I   DG  VV ++HQ    L Y  + ++ L  G   Y G ++     F    F     
Sbjct: 196 RDINQNDGITVVVTLHQVDYALRYC-ERIVALRQGHVFYDGSSQQ----FDNERF----- 245

Query: 137 RNPSDHFLRCIN 148
               DH  R IN
Sbjct: 246 ----DHLYRSIN 253

Length = 262

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 50.2 bits (120), Expect = 9e-07
 Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 6/102 (5%)

Query: 10  VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           VE  + + G+   A+  + +     +S GE++R+ ++  +     VLLLDEPT+ LD   
Sbjct: 120 VERAMERTGVAQFADRPVTS-----LSGGERQRVLLARALAQATPVLLLDEPTASLDINH 174

Query: 70  AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111
               +++++ +  DG+  V +IH       Y  D+L+LL++G
Sbjct: 175 QVRTLELVRRLVDDGKTAVAAIHDLDLAARYC-DELVLLADG 215

Length = 402

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 6/73 (8%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ- 93
           +S G+++R+SI+  +  +P VLL DEPTS LD      V+++++ +A +G+ +V   H+ 
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212

Query: 94  -----PSSHLFYL 101
                 SSH+ +L
Sbjct: 213 GFARHVSSHVIFL 225

Length = 257

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 14/85 (16%)

Query: 8   DIVEETIIKMGL-QACAETKIGN-----------WHL--RGISSGEKKRLSISIEILTQP 53
           ++V E +++ G+ +  A  +              WHL     S GE++R++I+   +   
Sbjct: 109 EVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADY 168

Query: 54  TVLLLDEPTSGLDSASAFFVIQVLK 78
            +LLLDEPT+ LD+A+   V++++ 
Sbjct: 169 PILLLDEPTASLDAANRQVVVELIA 193

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 15/45 (33%), Positives = 29/45 (64%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80
           S G+++R++I+  +   P +L+ DEPTS LD +    ++ +LK +
Sbjct: 147 SGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKL 191

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 2/88 (2%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQP 94
           S G+++R++I+  ++ QP ++L DEP + LD  SA  V+ +LK I   DG  V+ ++HQ 
Sbjct: 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV 208

Query: 95  SSHLFYLFDDLLLLSNGETIYFGDAKMA 122
                Y  D ++ L  G  ++ G A   
Sbjct: 209 DLAKKY-ADRIIGLKAGRIVFDGPASEL 235

Length = 258

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
           E+++IVEE++ K  L    + ++ +  L G+S G+++RL I+  +  +P VLLLDEPTS 
Sbjct: 116 ELDEIVEESLKKAALWDEVKDRLHDSAL-GLSGGQQQRLCIARALAVEPEVLLLDEPTSA 174

Query: 65  LDSASA 70
           LD  + 
Sbjct: 175 LDPIAT 180

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 5/87 (5%)

Query: 8   DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS 67
           + VEE + ++GL    +  +       +S+G+++R++++  +L+   + +LDEPT+ LD 
Sbjct: 104 EQVEEALARVGLNGFEDRPVAQ-----LSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158

Query: 68  ASAFFVIQVLKCIALDGRIVVCSIHQP 94
           A      + +      G +VV + HQ 
Sbjct: 159 AGVARFAEAMAGHCARGGMVVLTTHQD 185

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 1   MTNDEIND-IVEETIIKMGLQACAET--KIGNWHLRGISSGEKKRLSISIEILTQPTVLL 57
               + +D  +   + K+GL   AE   +   W  R +S GE++RL+ +  +L +P  + 
Sbjct: 480 NAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWD-RVLSGGEQQRLAFARLLLHKPKWVF 538

Query: 58  LDEPTSGLDSASAFFVIQVLK 78
           LDE TS LD  +   + Q+LK
Sbjct: 539 LDEATSALDEETEDRLYQLLK 559

Length = 604

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
            EI   V   + ++GL+  A+          +S GE++R++I+  I+  P +LL DEPT 
Sbjct: 112 REIQRRVGAALRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIVNSPPLLLADEPTG 166

Query: 64  GLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95
            LD   +  ++ +LK +   G  V+ + H  S
Sbjct: 167 NLDPDLSERILDLLKRLNKRGTTVIVATHDLS 198

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 6/123 (4%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
           DE   +V + + K+GL    + K+    L  +S G+++RL I+  +  +P +LLLDEPTS
Sbjct: 113 DEEEALVVDCLQKVGLFEEVKDKLKQNAL-ALSGGQQQRLCIARALAIKPKLLLLDEPTS 171

Query: 64  GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123
            LD  S+  + ++LK ++ +  +++ + +         +     L  GE I FG++K   
Sbjct: 172 ALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHL--GELIEFGESK--- 226

Query: 124 KFF 126
           +FF
Sbjct: 227 EFF 229

Length = 246

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 27/118 (22%), Positives = 61/118 (51%), Gaps = 7/118 (5%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
           ++++IVE+++  +GL      ++ +     +S G+++RL I+  I  +PT+LL+DEP S 
Sbjct: 121 KLDEIVEKSLTSVGLWEELGDRLKDSAFE-LSGGQQQRLCIARAIAVKPTMLLMDEPCSA 179

Query: 65  LDSASAFFVIQVLKCIALDGRIVVC--SIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           LD  +   +  +++ +  +  I+V   S+ Q       + D +    +G  + +   +
Sbjct: 180 LDPVATNVIENLIQELKKNFTIIVVTHSMKQAKK----VSDRVAFFQSGRIVEYNTTQ 233

Length = 251

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 21/58 (36%), Positives = 37/58 (63%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92
           +S GE++R++I+  I+ QP VLL DEPT  LD   ++ ++++ + I   G  V+ + H
Sbjct: 138 LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATH 195

Length = 223

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
            +S G+++RL+++  +L++P +LLLDE TS LD  +   ++Q L  I L GR V+   H+
Sbjct: 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI-LQGRTVIIIAHR 667

Query: 94  PSS 96
            S+
Sbjct: 668 LST 670

Length = 709

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
           ++ +IVE+++  + L    + ++    L  +S G+++RL I+  + T P VLL+DEPTS 
Sbjct: 127 KLQEIVEKSLKDVALWDEVKDRLHTQAL-SLSGGQQQRLCIARALATNPDVLLMDEPTSA 185

Query: 65  LDSAS 69
           LD  S
Sbjct: 186 LDPVS 190

Length = 259

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
           G+S G+++R++I+  ++  P +L+ DE TS LD  S   +++ +  I   GR V+   H+
Sbjct: 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI-CAGRTVIIIAHR 196

Query: 94  PSS 96
            S+
Sbjct: 197 LST 199

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 5/46 (10%)

Query: 24  ETKIGNWHLRG--ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS 67
           +T +G    RG  +S GEK+R++I+  IL  P +LLLDE TS LD+
Sbjct: 128 DTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDT 170

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 11/116 (9%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
           EI +IV E +  +GL+   +          +S G KKR++++  +   P +LL DEPT+G
Sbjct: 112 EIREIVLEKLEAVGLRGAEDLYPAE-----LSGGMKKRVALARALALDPELLLYDEPTAG 166

Query: 65  LDSASAFFV---IQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
           LD  ++  +   I+ LK   L    ++ + H   +  F + D + +L +G+ +  G
Sbjct: 167 LDPIASGVIDDLIRSLKK-ELGLTSIMVT-HDLDT-AFAIADRIAVLYDGKIVAEG 219

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 24  ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83
           +T IG     G+S G+ +RL+++  +L+  ++LLLDEPT+ LD+ +   ++Q L+ +A  
Sbjct: 447 DTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELA-K 504

Query: 84  GRIVVCSIHQPSSHLFYLFDDLLLLSNGETI 114
            + V+   H+         D +++L NG  +
Sbjct: 505 QKTVLVITHRL--EDAADADRIVVLDNGRLV 533

Length = 559

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 8/88 (9%)

Query: 25  TKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84
           T+IG+     +S G ++++ I   +LTQP +L+LDEPT G+D  + F + Q++  +A   
Sbjct: 387 TQIGS-----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKD 441

Query: 85  R-IVVCSIHQPSSHLFYLFDDLLLLSNG 111
           + I++ S   P   L  + D +L++SNG
Sbjct: 442 KGIIIISSEMP--ELLGITDRILVMSNG 467

Length = 491

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           +T  EI++ V+E I    L    +  +     +  SSG   RL+ S+    +P +LLLDE
Sbjct: 119 LTRKEIDEKVDEIIEFAELGDFIDQPV-----KTYSSGMYARLAFSVATHVEPDILLLDE 173

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
             +  D+A     ++ L  +    + +V   H   +   Y  D  + L +G+    G  +
Sbjct: 174 VLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYC-DRAIWLEHGQIRMEGSPE 232

Query: 121 MAVKFF 126
             +  +
Sbjct: 233 EVIPAY 238

Length = 249

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 5/89 (5%)

Query: 4    DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
            +EI  +   +I  +GL   A+   G +     S G K++LS +I ++  P ++LLDEPT+
Sbjct: 2045 EEIEKVANWSIQSLGLSLYADRLAGTY-----SGGNKRKLSTAIALIGCPPLVLLDEPTT 2099

Query: 64   GLDSASAFFVIQVLKCIALDGRIVVCSIH 92
            G+D  +   +   +  I  +GR VV + H
Sbjct: 2100 GMDPQARRMLWNTIVSIIREGRAVVLTSH 2128

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
           E    + E + ++GL   A+ K+     R ++ G ++R+ I+  +L +P +LLLDEPT G
Sbjct: 108 EARARIAELLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPALLLLDEPTVG 162

Query: 65  LDSASAFFVIQVLKCIALDGRIVV 88
           LD AS   +   ++ +A D  + V
Sbjct: 163 LDPASRAAITAHVRALARDQGLSV 186

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 7/105 (6%)

Query: 10  VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           V + + ++GL   A+  +G      +S G+++R+ ++  + T+P+VLLLDEP +GLD  +
Sbjct: 94  VRDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148

Query: 70  AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETI 114
              + ++   +A  G  ++ + H  +  +     D ++L NG  I
Sbjct: 149 QELLTELFIELAGAGTAILMTTHDLAQAMATC--DRVVLLNGRVI 191

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 20/131 (15%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRG-----ISSGEKKRLSISIEILTQPTVLLL 58
           DE+   V+  + + G++          HL+      +S G+KKR++I+  ++ +P VL+L
Sbjct: 116 DEVRKRVDNALKRTGIE----------HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVL 165

Query: 59  DEPTSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
           DEPT+GLD      ++++L  +  + G  ++ + H       Y  D++ ++  G  I  G
Sbjct: 166 DEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYC-DNVFVMKEGRVILQG 224

Query: 118 DAKMAVKFFAE 128
           + K   + FAE
Sbjct: 225 NPK---EVFAE 232

Length = 283

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 10/116 (8%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
            I ++V   +  +GL+  A           +S G +KR++++  I   P +L LDEPTSG
Sbjct: 120 LIRELVLMKLELVGLRGAAADLYP----SELSGGMRKRVALARAIALDPELLFLDEPTSG 175

Query: 65  LDS-ASAFFV--IQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
           LD  ++      I+ L   AL   +++ + H   S L  + D + +L++G+ I  G
Sbjct: 176 LDPISAGVIDELIRELND-ALGLTVIMVT-HDLDS-LLTIADRVAVLADGKVIAEG 228

Length = 263

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 5/80 (6%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           +   EI   V E +  +GL   A+          +S G+K+R++I+  +   P +LL DE
Sbjct: 113 VPKAEIKQRVAELLELVGLSDKADRYPAQ-----LSGGQKQRVAIARALANNPKILLCDE 167

Query: 61  PTSGLDSASAFFVIQVLKCI 80
            TS LD  +   ++++LK I
Sbjct: 168 ATSALDPETTQSILELLKDI 187

Length = 339

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
            +S G+++R++++  +   P +++LDEP S LD      +   +K +   G  VV   H+
Sbjct: 454 TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHR 513

Query: 94  PSSHLFYLFDDLLLLSNGETIYFGDA 119
           PS  L    D +L+L +G    FG+ 
Sbjct: 514 PS--LLGCVDKILVLQDGRIARFGER 537

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 24/83 (28%), Positives = 44/83 (53%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           +S GEK+R++I   +LT P +LL+DEP + LD      ++  L+ +  +  I +  +   
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHS 188

Query: 95  SSHLFYLFDDLLLLSNGETIYFG 117
              +  L D +++L NG+    G
Sbjct: 189 LDEVLRLADRVVVLENGKVKASG 211

Length = 352

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           +S GE++R++I+  ++  P +LLLDEP S LD  +   + + LK I  +  + V  +   
Sbjct: 130 LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189

Query: 95  SSHLFYLFDDLLLLSNGETIYFGD 118
               + L D + ++ NG+ I  G 
Sbjct: 190 FEEAWALADKVAIMLNGKLIQVGK 213

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.3 bits (112), Expect = 5e-06
 Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
           ++++IVE+++ K  L    + K+ N +   +S G+++RL I+  +  +P V+L+DEPTS 
Sbjct: 122 KLDEIVEQSLKKSALWNEVKDKL-NTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSA 180

Query: 65  LDSAS 69
           LD  S
Sbjct: 181 LDPIS 185

Length = 254

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           +S G ++++     ++ +P +L+LDEP SGLD  +   +   +  +  +G  ++ S H+ 
Sbjct: 131 LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHR- 189

Query: 95  SSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFA 127
             H+  L D LL+L  G+T+ +G  +   + F 
Sbjct: 190 MEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222

Length = 300

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 15/146 (10%)

Query: 6   INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGL 65
           +++IVEE++ K  L    + ++ +  L  +S G+++RL I+  +  +P VLLLDEP S L
Sbjct: 137 LDEIVEESLTKAALWDEVKDRLHSSAL-SLSGGQQQRLCIARTLAMKPAVLLLDEPASAL 195

Query: 66  DSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKF 125
           D  S   + +++  +  +  I++ + H     L  + D      NG+ + +         
Sbjct: 196 DPISNAKIEELITELKEEYSIIIVT-HNMQQAL-RVSDRTAFFLNGDLVEYDQ------- 246

Query: 126 FAEAGFPCPSRRNPSDHFLRCINSDF 151
             E  F  P ++   D+    IN  F
Sbjct: 247 -TEQIFTSPKQQKTEDY----INGRF 267

Length = 268

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
            ++++VE ++    L    + ++   H  G+S G+++RL I+  I  +P V+L+DEPTS 
Sbjct: 117 VLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSA 175

Query: 65  LD 66
           LD
Sbjct: 176 LD 177

Length = 249

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 33  RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92
           R +S GE++RL+++  +L    + LLDEPT GLD  +   V+ +L   A    +++ + H
Sbjct: 473 RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVT-H 531

Query: 93  QPSSHLFYL--FDDLLLLSNGETIYFGD 118
                L  L   D +++L NG+ I  G 
Sbjct: 532 ----RLRGLERMDRIIVLDNGKIIEEGT 555

Length = 573

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 19/93 (20%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           +S GE++R+ I+  ++  P +L+LDEP  GLD  +   ++  L+ +A             
Sbjct: 172 LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS---------PG 222

Query: 95  SSHLFYL----------FDDLLLLSNGETIYFG 117
           +  L ++          F   LLL  GE +  G
Sbjct: 223 APALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255

Length = 257

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 20/36 (55%), Positives = 26/36 (72%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           G+S G+++RL I+  I  +P VLLLDEPTS LD  S
Sbjct: 168 GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIS 203

Length = 272

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 20/85 (23%), Positives = 48/85 (56%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95
           S G+++R++I+  ++ +P +L+LDEPTS LD +    ++ +L  +  +  +    I    
Sbjct: 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL 202

Query: 96  SHLFYLFDDLLLLSNGETIYFGDAK 120
           + + ++ D + ++ NG+ +  G  +
Sbjct: 203 ALVEHMCDRIAVMDNGQIVEIGPTE 227

Length = 252

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 6/117 (5%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           ++  EI++ ++E I    L    +  +  +     SSG K RL+ +I    +P +LL+DE
Sbjct: 114 LSRKEIDEKIDEIIEFSELGDFIDLPVKTY-----SSGMKARLAFAIATALEPDILLIDE 168

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
             +  D+A      + L+ +   G+ V+   H PSS +  L D  L+L  G+  + G
Sbjct: 169 VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS-IKRLCDRALVLEKGKIRFDG 224

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 9/84 (10%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL----DGRIVVCSI 91
           S G K+RL I+I +L  P +L+LDEPT+GLD       IQ L+ +       G  V+ S 
Sbjct: 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDP----IGIQELRELIRSFPEQGITVILSS 181

Query: 92  HQPSSHLFYLFDDLLLLSNGETIY 115
           H   S +  L D + ++S G   Y
Sbjct: 182 H-ILSEVQQLADHIGIISEGVLGY 204

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 5/95 (5%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
           EI+DIVE  +    L    + KI    L  +S G+++RL I+  +  +P VLL+DEP  G
Sbjct: 122 EIDDIVESALKDADLWDEIKHKIHKSALD-LSGGQQQRLCIARALAVKPKVLLMDEPCFG 180

Query: 65  LDSASAFFVIQVLKCIALDGR----IVVCSIHQPS 95
           LD  ++  V  +++ + L       IV  ++HQ S
Sbjct: 181 LDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVS 215

Length = 261

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 4/100 (4%)

Query: 24  ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83
           +T+IG      +S G+++R++++  +   P +++LDEP S LDS     +   +      
Sbjct: 463 DTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR 521

Query: 84  GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123
           G  VV   H+PS       D +L+L +G    FG  +  V
Sbjct: 522 GGTVVVIAHRPS--ALASVDKILVLQDGRIAAFG-PREEV 558

Length = 580

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 23  AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82
            +T +G      +S GE++RL+++  +L    +LLLDEPT  LD+ +A  +++ L   AL
Sbjct: 461 LDTVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-AL 518

Query: 83  DGRIVVCSIHQP 94
            GR VV   H  
Sbjct: 519 SGRTVVLITHHL 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
                    + E + ++GL    +  +G      +S+G+++R++++   L+   + +LDE
Sbjct: 102 FHGSGNAATIWEALAQVGLAGLEDLPVGQ-----LSAGQQRRVALARLWLSPAPLWILDE 156

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS 96
           P + LD      +  ++   A  G IV+ + HQP  
Sbjct: 157 PFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192

Length = 209

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
           +S G+++R++I+  +   P V+L DEPTS LD      V+ V+K +A +G  +V   H+
Sbjct: 136 LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHE 194

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 5/86 (5%)

Query: 3   NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPT 62
           + E  D +EE +  +GL   A+   G      +S G+K+ L I + ++  P +LLLDEP 
Sbjct: 117 SAEEKDRIEEVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPV 171

Query: 63  SGLDSASAFFVIQVLKCIALDGRIVV 88
           +G+         ++LK +A    +VV
Sbjct: 172 AGMTDEETEKTAELLKSLAGKHSVVV 197

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 32  LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASA 70
           +   S G ++RL I+  ++ QP VL LDEPT+GLD  + 
Sbjct: 122 VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 3/105 (2%)

Query: 33  RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI-VVCSI 91
           R +S GEK+R+ ++ ++  +P + L DEPT  LD  +A  V   L+       I +V + 
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226

Query: 92  HQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSR 136
           H P   +  L D  + L NGE    G     V  F E G     +
Sbjct: 227 HWPEV-IEDLSDKAIWLENGEIKEEGTPDEVVAVFME-GVSEVEK 269

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 16/75 (21%)

Query: 8   DIVEETIIKMGLQACA-----------ETKIGNWHLRGI--SSGEKKRLSISIEILTQPT 54
               E + +    A A           +T IG    RG+  S G+++R++I+  +L  P 
Sbjct: 102 GATREEVEEAARAANAHEFIMELPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKDPP 158

Query: 55  VLLLDEPTSGLDSAS 69
           +L+LDE TS LD+ S
Sbjct: 159 ILILDEATSALDTES 173

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 8/103 (7%)

Query: 29  NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVV 88
            W +R +S G++ R  ++  +L  P VL LDEPT GLD  +   + + LK    + +  V
Sbjct: 151 KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATV 210

Query: 89  CSIHQPSSHLF----YLFDDLLLLSNGETIYFGDAKMAVKFFA 127
                 ++H+F     L D +LL+  G+ ++ G      + F 
Sbjct: 211 LL----TTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249

Length = 325

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 5/48 (10%)

Query: 24  ETKIGNWHLRG--ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           +T +G    RG  +S G+K+R++I+  +L  P +LLLDE TS LD+ S
Sbjct: 130 DTLVGE---RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQ 93
           +S GEKKR++I+  I  +P VL+LDEPT+GLD      +I  L  +    G  V+ S HQ
Sbjct: 138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197

Length = 277

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
           D I + VEE++    L    + K+    L G+S G+++RL I+  I   P V+L+DEP S
Sbjct: 117 DFIEERVEESLKAAALWDEVKDKLDKSAL-GLSGGQQQRLCIARTIAVSPEVILMDEPCS 175

Query: 64  GLDSASAFFVIQVLKCIALDGRIVVCS 90
            LD  S   +  ++  +  D  IV+ +
Sbjct: 176 ALDPISTTKIEDLIHKLKEDYTIVIVT 202

Length = 250

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 19/35 (54%), Positives = 24/35 (68%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           +S GE +R+SI+  +   P VLLLDEPTS LD  S
Sbjct: 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTS 166

Length = 241

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 18/36 (50%), Positives = 27/36 (75%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           G+S G+++RL I+  +  +P +LL+DEPTS LD AS
Sbjct: 148 GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAS 183

Length = 252

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA-LDGRIVVCSIHQP 94
           S G+++R++I+  ++  P ++L DEPT  LDS +A  V+++L+ +    G+ ++   H P
Sbjct: 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203

Length = 226

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95
           S G ++R+ I++ +  +P +L+ DEPT+ LD  +   ++ +LK +  +  + V  I    
Sbjct: 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFI---- 211

Query: 96  SHLF----YLFDDLLLLSNGETIYFGDAK 120
           +H       L D ++++  GE +  G  +
Sbjct: 212 THDLGVVAELADRVVVMYKGEIVETGPTE 240

Length = 539

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 9   IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA 68
           IV   + ++ +      +IG      +S G+KKR+ ++  I  Q  V+LLDEP +G+D  
Sbjct: 122 IVTAALARVDMVEFRHRQIGE-----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVK 176

Query: 69  SAFFVIQVLKCIALDGRIVVCSIHQPSS 96
           +   +I +L+ +  +G+ ++ S H   S
Sbjct: 177 TEARIISLLRELRDEGKTMLVSTHNLGS 204

Length = 272

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 22/83 (26%), Positives = 44/83 (53%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           +S GEK+R++I   +L+ P +LL+DEP + LD    + ++  L+ +  +  I +  +   
Sbjct: 132 LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHS 191

Query: 95  SSHLFYLFDDLLLLSNGETIYFG 117
              +  L D +++L +G     G
Sbjct: 192 LQEVLRLADRVVVLEDGRVAAAG 214

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 3   NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPT 62
             E  +  EE + ++GL               +S G+++R++I+  +   P ++L DEPT
Sbjct: 114 KKERRERAEELLERVGLGDRLNHYPSE-----LSGGQQQRVAIARALANDPKIILADEPT 168

Query: 63  SGLDSASAFFVIQVLKCIA-LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112
             LDS +   V+++L+ +    G  +V   H P   L    D ++ L +G+
Sbjct: 169 GNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE--LAEYADRIIELRDGK 217

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
            +S G+++RL I+  I  +P VLLLDEP S LD  S
Sbjct: 156 SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPIS 191

Length = 260

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 8/136 (5%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           +  DE+   VEE +  + +    +     +HL   S G+KKR++I+  +   P V++LDE
Sbjct: 110 LDKDEVERRVEEALKAVRMWDFRDK--PPYHL---SYGQKKRVAIAGVLAMDPDVIVLDE 164

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           P + LD      ++++L  +   G+ V+ + H       +  D +++L  G  +  GD  
Sbjct: 165 PMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWA-DQVIVLKEGRVLAEGDKS 223

Query: 121 MAV--KFFAEAGFPCP 134
           +        +AG   P
Sbjct: 224 LLTDEDIVEQAGLRLP 239

Length = 274

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 2   TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEP 61
           +  E+++IVE ++ K GL    + ++      G+S G+++RL I+  I   P V+L+DEP
Sbjct: 132 SKAELDEIVETSLRKAGLWEEVKDRLHEPG-TGLSGGQQQRLCIARAIAVSPEVILMDEP 190

Query: 62  TSGLD 66
            S LD
Sbjct: 191 CSALD 195

Length = 267

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 17/51 (33%), Positives = 36/51 (70%)

Query: 33  RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83
             +S G+K+R++I+  ++ +P ++L DEPT+ LDS S   V+++++ +A +
Sbjct: 140 HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           +  +E   I +E +  +GL    +          +S G+K+ L I + +   P +LLLDE
Sbjct: 120 LRAEERRRI-DELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDE 173

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVV 88
           P +G+  A      ++LK +A    I+V
Sbjct: 174 PVAGMTDAETEKTAELLKSLAGKHSILV 201

Length = 249

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASA 70
           +S GEK+R+++   +   P +LLLDE TS LD ++ 
Sbjct: 134 LSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169

Length = 223

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 4/123 (3%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           +S G+ +R++I+  +  +P VL+LDEPT+GLD  +   ++Q+ + I   G+ VV   H  
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM 204

Query: 95  SSHLFYLFDDLLLLSNGETIYFG---DAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDF 151
                Y  D + LL  G  I  G   D    V F        P   + +D   +     F
Sbjct: 205 DDVADYA-DYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQKTGAVTF 263

Query: 152 DKV 154
           +K+
Sbjct: 264 EKL 266

Length = 288

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 14/113 (12%)

Query: 9   IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQ-------PTVLLLDEP 61
           I  + +    L   A         R +S GE++R+ ++  +L Q          L LDEP
Sbjct: 115 IAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLA-RVLAQLWPPVPSGRWLFLDEP 168

Query: 62  TSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETI 114
           TS LD A     +++ + +A +G  V+  +H  +    Y  D ++LL  G  I
Sbjct: 169 TSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYA-DRIVLLHQGRVI 220

Length = 259

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI--ALDGRIVVCSIH 92
           +S G ++R++I+  I  +P VLLLDEP S LD+     + + +  +   L    ++C  H
Sbjct: 138 LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTH 197

Query: 93  QPSSHLFYLFDDLLLLSNGETIYFGDAK 120
                L  L D   ++ +G     G+ +
Sbjct: 198 DQDDAL-TLADKAGIMKDGRLAAHGEPQ 224

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 10  VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           +E+ +  +GL    +          +S+G+++RL+++   L++  + +LDEPT+ LD A 
Sbjct: 108 IEDALAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAG 162

Query: 70  AFFVIQVLKCIALDGRIVVCSIHQP 94
              +  +L+     G IV+ + HQ 
Sbjct: 163 VALLAGLLRAHLARGGIVLLTTHQD 187

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 5/74 (6%)

Query: 19  LQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLK 78
           L+  A+ K+G      +S G K+RL+++  ++  P VL+LDEPT+GLD  +   + + L+
Sbjct: 128 LENKADAKVGE-----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLR 182

Query: 79  CIALDGRIVVCSIH 92
            +   G+ ++ + H
Sbjct: 183 SLLARGKTILLTTH 196

Length = 306

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 6/89 (6%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVC--SI 91
           G+S G+++R+ I+  + T P ++LLDEPTS LD  SA  + + L  +  D  +++   S+
Sbjct: 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSM 207

Query: 92  HQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
            Q S     + D      +G+ I + D K
Sbjct: 208 QQASR----ISDRTGFFLDGDLIEYNDTK 232

Length = 252

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 14/31 (45%), Positives = 24/31 (77%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           S G ++R++++  +L +P +LLLDEPT+ LD
Sbjct: 155 SGGWRRRVALARALLEEPDLLLLDEPTNHLD 185

Length = 530

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 5/63 (7%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
            EI+  V+E    +GL+      + N     +S G+++R++++  ++ +P V LLDEP S
Sbjct: 108 AEIDKRVKEVAKLLGLE-----HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLS 162

Query: 64  GLD 66
            LD
Sbjct: 163 NLD 165

Length = 338

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 23/92 (25%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           M+  EI  ++   +    L++ A+ ++       +S G K+RL+++  ++  P +L+LDE
Sbjct: 107 MSTREIEAVIPSLLEFARLESKADVRVAL-----LSGGMKRRLTLARALINDPQLLILDE 161

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92
           PT+GLD  +   + + L+ +   G+ ++ + H
Sbjct: 162 PTTGLDPHARHLIWERLRSLLARGKTILLTTH 193

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 45.4 bits (107), Expect = 6e-05
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 4/90 (4%)

Query: 24  ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI-AL 82
           ET +G+ +   +S G+K+R+SI+  I+  P +L+LDE TS LD+ S + V + +  +   
Sbjct: 570 ETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGN 628

Query: 83  DGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112
           + RI +   H+ S+  +   + + +LSN E
Sbjct: 629 ENRITIIIAHRLSTIRYA--NTIFVLSNRE 656

Length = 1466

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)

Query: 3   NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPT 62
             E  + ++E +  +GL   A+  +  +     S G ++RL I+  ++ +P VL LDEPT
Sbjct: 105 GAERRERIDELLDFVGLLEAADRLVKTY-----SGGMRRRLEIARSLVHRPEVLFLDEPT 159

Query: 63  SGLDSAS 69
            GLD  +
Sbjct: 160 IGLDPQT 166

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFV---IQVLK 78
           G+S G+++RL I+  I  +P VLL+DEP S LD  S   +   I  LK
Sbjct: 148 GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK 195

Length = 258

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
           ++++IVE+++    L    + ++    L G+S G+++RL I+  +  +P VLL+DEPTS 
Sbjct: 118 KLDEIVEKSLKGAALWDEVKDRLKKSAL-GLSGGQQQRLCIARALAVEPEVLLMDEPTSA 176

Query: 65  LDSAS 69
           LD  S
Sbjct: 177 LDPIS 181

Length = 250

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 5/111 (4%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
           DEI   V E +  +GL    ++   N     +S G+K+R++I+  + + P VLL DE TS
Sbjct: 115 DEIKRKVTELLALVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATS 169

Query: 64  GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETI 114
            LD A+   ++++LK I     + +  I      +  + D + ++SNGE I
Sbjct: 170 ALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELI 220

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 33  RGI--SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVL 77
           RG+  S G+++R++I+  IL    +LLLDE TS LD+ S   V Q L
Sbjct: 473 RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL 519

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 7/85 (8%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95
           S GEK RL +++ +  +P +LLLDEPT+ LD      + + L  I  +G +VV S H   
Sbjct: 432 SGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL--IDFEGALVVVS-H--D 486

Query: 96  SHLF-YLFDDLLLLSNGETIYF-GD 118
            HL     DDL L+ +G+   F GD
Sbjct: 487 RHLLRSTTDDLYLVHDGKVEPFDGD 511

Length = 638

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 12/90 (13%)

Query: 33  RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLK--CIALDGRIVVCS 90
             +S GEK RL ++  +L  P +LLLDEPT+ LD  S    ++ L+   +  +G +++ S
Sbjct: 438 GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES----LEALEEALLDFEGTVLLVS 493

Query: 91  IHQPSSHLFY--LFDDLLLLSNGETIYFGD 118
            H      F   +   + L+ +    + G 
Sbjct: 494 -HDRY---FLDRVATRIWLVEDKVEEFEGG 519

Length = 530

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 33  RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80
           R +S GE++RL+I+  +L  P +L+LDE TS LD  +   V   L  +
Sbjct: 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDEL 517

Length = 588

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 13/73 (17%)

Query: 3   NDEIND-IVEETIIKMGLQACAE--------TKIGNWHLRGISSGEKKRLSISIEILTQP 53
           N+ IND  + E I++  L++ A          K GN     +S G+++RL I+  I  +P
Sbjct: 189 NNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGN----ALSGGQQQRLCIARAIALEP 244

Query: 54  TVLLLDEPTSGLD 66
            VLL+DEPTS LD
Sbjct: 245 EVLLMDEPTSALD 257

Length = 329

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 15/32 (46%), Positives = 26/32 (81%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           +S G+K+R++I+  +  +P +L+LDEPT+GLD
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176

Length = 287

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 21  ACAETKIGNWHLR---GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQ-V 76
           A A   +     R    +S GE++R++++  ++    VLLLDEP + LD A    ++  V
Sbjct: 112 ALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV 171

Query: 77  LKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
           L   A     V+   HQP      L   ++ L NG     G
Sbjct: 172 LDLHAETKMTVLMVTHQPEDAK-RLAQRVVFLDNGRIAAQG 211

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
           ++++IVE  +    L    + K+    L G+S G+++RL I+  +  +P VLL+DEP S 
Sbjct: 122 DLDEIVESALKGAALWQEVKDKLNKSAL-GLSGGQQQRLCIARALAIKPKVLLMDEPCSA 180

Query: 65  LDSASAFFVIQVL 77
           LD  +   V +++
Sbjct: 181 LDPIATMKVEELI 193

Length = 259

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 18/32 (56%), Positives = 24/32 (75%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           +S G+++RL I+  I T+P VLLLDEP S LD
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALD 181

Length = 261

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           ++ +E  + V E + K+GL      +    +   +S G+++R+ I+  +   P +++ DE
Sbjct: 80  LSKEERRERVLELLEKVGLP----EEFLYRYPHELSGGQRQRIGIARALALNPKLIVADE 135

Query: 61  PTSGLD 66
           P S LD
Sbjct: 136 PVSALD 141

Length = 268

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 21/63 (33%), Positives = 38/63 (60%)

Query: 33  RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92
           R +S G+++R++I+  +  +P V+L DEPTS LD      V+  ++ +A + R +V   H
Sbjct: 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTH 202

Query: 93  QPS 95
           + S
Sbjct: 203 EMS 205

Length = 250

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFV---IQVLK 78
           G+S G+++RL I+  +  +P V+L+DEPTS LD  S   V   +Q LK
Sbjct: 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK 214

Length = 271

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 19/45 (42%), Positives = 29/45 (64%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79
           +S G+K+R++I+  ++  P VL+LDE TS LD+ S   V Q L  
Sbjct: 151 LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD 195

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 13/91 (14%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ- 93
           +S G+++R++I+  ++ +P VLL DEPT+ LD      ++ ++K +A  G   V   H+ 
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV 201

Query: 94  -----PSSHLFYLFDDLLLLSNGETIYFGDA 119
                 +S + Y       + NG  +  GDA
Sbjct: 202 EVARKTASRVVY-------MENGHIVEQGDA 225

Length = 242

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
           D  +++VE ++ +  L      ++ +  L G+S G+++RL I+  +   P V+L+DEP S
Sbjct: 171 DAEDELVERSLRQAALWDEVNDRLDDNAL-GLSGGQQQRLCIARCLAVDPEVILMDEPAS 229

Query: 64  GLD 66
            LD
Sbjct: 230 ALD 232

Length = 305

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
           ++ +IVE+++ K  L      ++    L G+S G+++RL ++  +  +P +LLLDEPTS 
Sbjct: 154 QLEEIVEKSLRKAALWDEVSDRLDKNAL-GLSGGQQQRLCVARTLAVEPEILLLDEPTSA 212

Query: 65  LD 66
           LD
Sbjct: 213 LD 214

Length = 286

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
            +S G+K+R++++  +  +P  L+ DEPT+GLD      ++++   +   G+ ++   H 
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224

Query: 94  PSSHLFYLFDDLLLLSNGETIYFGD 118
             + L +     +   +G+ I  GD
Sbjct: 225 LDNVLEWT-KRTIFFKDGKIIKDGD 248

Length = 305

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 20/46 (43%), Positives = 33/46 (71%), Gaps = 1/46 (2%)

Query: 24   ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
            +T +G +  + +S G+K+R++I+  +L +P +LLLDE TS LDS S
Sbjct: 1349 DTNVGPYG-KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393

Length = 1466

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 3   NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPT 62
           N  I   VEET+    L    + K+       +S G+++RL I+  +   P+VLL+DEP 
Sbjct: 116 NAFIRQRVEETLKGAALWDEVKDKLKESAF-ALSGGQQQRLCIARAMAVSPSVLLMDEPA 174

Query: 63  SGLDSASAFFVIQVLKCIALDGRIVVCS 90
           S LD  S   V +++  +  D  IV+ +
Sbjct: 175 SALDPISTAKVEELIHELKKDYTIVIVT 202

Length = 250

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
            EI + V E +  + L+  A  K        +S G+++R++I+  ++ +P VLLLDEP  
Sbjct: 105 AEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLG 159

Query: 64  GLD 66
            LD
Sbjct: 160 ALD 162

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 17/40 (42%), Positives = 27/40 (67%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQ 75
           S G+++ LS+ +  L  P +LLLDE T+ LD  +A FV++
Sbjct: 150 SGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVME 189

Length = 263

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 17/44 (38%), Positives = 33/44 (75%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLK 78
           +S GE++R+ I++ +LT+P +L+ DEPT+ LD +    ++Q+L+
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLR 200

Length = 529

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 20/86 (23%), Positives = 44/86 (51%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           +S G  +R+ I++ +L +P  L+ DEPT+ LD  +   V+++L+ +       +  I   
Sbjct: 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD 185

Query: 95  SSHLFYLFDDLLLLSNGETIYFGDAK 120
              +  + D++ ++ +G  +  G  K
Sbjct: 186 LGVVARIADEVAVMDDGRIVERGTVK 211

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 20/58 (34%), Positives = 35/58 (60%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
           S G+++R++I+  +   P V+L DEPTS LD      V+ V+K +A +G  ++   H+
Sbjct: 138 SGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHE 195

Length = 240

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 24/97 (24%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95
           S G+++R++I+  ++ +P ++LLDEPTS LD +    V+ +L+   L  +      H   
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLR--DLQQK------HG-- 477

Query: 96  SHLFYLF------------DDLLLLSNGETIYFGDAK 120
             L YLF              ++++ +G+ +  G  +
Sbjct: 478 --LSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTE 512

Length = 534

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           G S GEKKR  I   +L +P + +LDEP SGLD
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLD 136

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 30  WHL--RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVL 77
           W L     S GE++R++I+   +    +LLLDEPT+ LD+ +   V++++
Sbjct: 146 WSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELI 195

Length = 235

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
            EI + V E +  +GL+  A+          +S G+K+R+ I+  +   P VLL DE TS
Sbjct: 115 AEIEERVLELLELVGLEDKADAYPAQ-----LSGGQKQRVGIARALANNPKVLLCDEATS 169

Query: 64  GLDSASAFFVIQVLKCI 80
            LD  +   ++ +L+ I
Sbjct: 170 ALDPETTQSILALLRDI 186

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 16/35 (45%), Positives = 28/35 (80%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           +S GE++R+++   +L++P +LLLDEPT+ LD+ S
Sbjct: 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES 196

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 18/58 (31%), Positives = 37/58 (63%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92
           +S G K+RL+++  ++  P +L+LDEPT+GLD  +   + + L+ +   G+ ++ + H
Sbjct: 173 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230

Length = 340

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 9/108 (8%)

Query: 24  ETKIGNWHLRGI--SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81
           ET+IG    +G+  S G+K R+S++  +     V LLD+P S LD+     V++     A
Sbjct: 773 ETEIGE---KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGA 829

Query: 82  LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK--MAVKFFA 127
           L G+  V + HQ   H+    D ++ L +G   + G +   M    +A
Sbjct: 830 LAGKTRVLATHQ--VHVVPRADYVVALGDGRVEFSGSSADFMRTSLYA 875

Length = 1560

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASA 70
           +S G+++RL I+  I   P V+L+DEP S LD  + 
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVAT 216

Length = 285

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
            +++IVE ++ +  L    +  +    L  +S G+++RL I+  I  +P +LL+DEP S 
Sbjct: 135 VLDEIVETSLKQAALWDQVKDDLHKSAL-TLSGGQQQRLCIARAIAVKPDILLMDEPASA 193

Query: 65  LDSAS 69
           LD  S
Sbjct: 194 LDPIS 198

Length = 267

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           +S G+++R+SI+  ++    V+L DEPT  LDS S   V+ +L  +   G  V+   H P
Sbjct: 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 204

Length = 648

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 10/122 (8%)

Query: 10  VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA- 68
           VE    ++GL    +   G      +S G+++R++++  ++ +  +LLLDEP S LD A 
Sbjct: 110 VEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARCLVREQPILLLDEPFSALDPAL 164

Query: 69  SAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAE 128
            A  +  V +        ++   H P      + D ++ L NG     G  +   +  + 
Sbjct: 165 RAEMLALVSQLCDERKMTLLMVTHHPED-AARIADRVVFLDNGRIAAQGSTQ---ELLSG 220

Query: 129 AG 130
             
Sbjct: 221 KA 222

Length = 231

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 5/51 (9%)

Query: 16  KMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           ++GL   A  + GN     ++ G+++RL I+  ++TQP +L+LDEP +GL+
Sbjct: 140 RVGLLEHANRQAGN-----LAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185

Length = 255

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
            +S GE++ L+I+  +L  P +L+LDE TS +D+ +   + + L+ + + GR  +   H+
Sbjct: 139 NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAHR 197

Query: 94  PSSHLFYLFDDLLLLSNGETI 114
            S+      D +L+L +G+ I
Sbjct: 198 LSTIKNA--DKILVLDDGKII 216

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 5/74 (6%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
           E  +   E + K+GL+     +        +S GE++R++I+  ++ QP+++L DEPT  
Sbjct: 117 EAKERAYEMLEKVGLEHRINHRPSE-----LSGGERQRVAIARALVNQPSLVLADEPTGN 171

Query: 65  LDSASAFFVIQVLK 78
           LD+ +A  +  ++ 
Sbjct: 172 LDNNNAKIIFDLML 185

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 5/75 (6%)

Query: 6   INDIVEETIIKMGLQACAETKIGNWHLRG--ISSGEKKRLSISIEILTQPTVLLLDEPTS 63
           ++++VE+++ +  L    E K  N H  G  +S G+++RL I+  +  +P V+L+DEP S
Sbjct: 120 LDEVVEKSLRQAALWD--EVK-DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCS 176

Query: 64  GLDSASAFFVIQVLK 78
            LD  S   + ++++
Sbjct: 177 ALDPVSTMRIEELMQ 191

Length = 251

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
            + +E      E + K+GL   A     + +   +S G+++R++I+  +  +P ++L DE
Sbjct: 108 ASKEEAEKQARELLAKVGLAERA-----HHYPSELSGGQQQRVAIARALAVKPKLMLFDE 162

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
           PTS LD      V++V++ +A +G  +V   H+
Sbjct: 163 PTSALDPELRHEVLKVMQDLAEEGMTMVIVTHE 195

Length = 240

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           G+S G+++RL I+  +  +P VLL+DEP S LD
Sbjct: 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181

Length = 253

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA 68
           +S GE++R+ I+  ++ +P VLL DEPT  LD A
Sbjct: 138 LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDA 171

Length = 222

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 18/54 (33%), Positives = 32/54 (59%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVV 88
           +S G+++RL I+  I  QP V+L+DEP S LD  S   + +++  +     I++
Sbjct: 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIII 205

Length = 264

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 3   NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPT 62
             EI   V E +  + L+  A+ K        +S G+++R++I+  ++ +P VLLLDE  
Sbjct: 118 AAEITPRVMEALRMVQLEEFAQRKPHQ-----LSGGQQQRVAIARAVVNKPKVLLLDESL 172

Query: 63  SGLD 66
           S LD
Sbjct: 173 SALD 176

Length = 375

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 30/116 (25%), Positives = 63/116 (54%), Gaps = 11/116 (9%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
           E ++IVE ++ ++ L    + ++ +  +  +S G+++RL I+  I  +P V+L+DEP S 
Sbjct: 120 EADEIVESSLKRVALWDEVKDRLKSNAME-LSGGQQQRLCIARTIAVKPEVILMDEPASA 178

Query: 65  LDSASAFFVIQVLKCIALDGRIVVCS--IHQPS-----SHLFYLFDDLLLLSNGET 113
           LD  S   + ++++ +     I++ +  + Q +     +  FY+ D   L+  GET
Sbjct: 179 LDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGD---LVECGET 231

Length = 252

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           S GEK+R++I   +LT P +LL+DEP + LD
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLD 160

Length = 352

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 4/88 (4%)

Query: 24  ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83
           +T +G   L+ +S GEK+R++I+  IL  P +L+LDE TS LD+ +   +   L+ ++  
Sbjct: 390 DTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-A 447

Query: 84  GRIVVCSIHQPSSHLFYLFDDLLLLSNG 111
           GR  +   H+ S+ +    D++++L NG
Sbjct: 448 GRTTLVIAHRLSTIIDA--DEIIVLDNG 473

Length = 497

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 24  ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83
            T++G      +S G+++R++I+  ++  P +L+ DE TS LD  S   +++ ++ I   
Sbjct: 584 NTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-R 641

Query: 84  GRIVVCSIHQPSS 96
           GR V+   H+ S+
Sbjct: 642 GRTVIIIAHRLST 654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVC--SIH 92
           +S G+++R+ I+  +  +P V+LLDEPTS LD  S+  +  +L  +     I++   S+H
Sbjct: 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMH 208

Query: 93  QPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           Q S     + D       G  I F D K
Sbjct: 209 QASR----ISDKTAFFLTGNLIEFADTK 232

Length = 252

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 7/111 (6%)

Query: 10  VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           VEE I  +GL+  A   + +     +S GE++R  I++ +      LLLDEPTS LD A 
Sbjct: 128 VEEAISLVGLKPLAHRLVDS-----LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182

Query: 70  AFFVIQVLKCIA-LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119
              V+ ++  ++   G  V+  +H  +    Y  D L+ L  GE I  G  
Sbjct: 183 QVDVLALVHRLSQERGLTVIAVLHDINMAARYC-DYLVALRGGEMIAQGTP 232

Length = 265

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           +S G+++RL I+  I  +P V+L+DEP S LD  S
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPIS 189

Length = 269

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
             I     E I +  ++A +         R +S G +++L ++ E+  +P +L+  +PT 
Sbjct: 377 RAIRKFARELIEEFDVRAPSPDA----PARSLSGGNQQKLILARELARRPDLLIAAQPTR 432

Query: 64  GLDSASAFFV 73
           GLD  +  F+
Sbjct: 433 GLDVGAIEFI 442

Length = 501

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 24/92 (26%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
            E+++ VE  + K  L    + ++ N +   +S G+++RL I+  +  +P +LL+DEPT+
Sbjct: 120 KELDERVEWALKKAALWDEVKDRL-NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTA 178

Query: 64  GLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95
            +D      + ++L  +  +  IV+ + H P+
Sbjct: 179 NIDPVGTAKIEELLFELKKEYTIVLVT-HSPA 209

Length = 253

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 40.6 bits (96), Expect = 8e-04
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 5/41 (12%)

Query: 31  HLRG-----ISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           HLR      +S GE++R+ I+  +   P  +LLDEP +G+D
Sbjct: 131 HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171

Length = 243

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 41.1 bits (97), Expect = 9e-04
 Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           +   EI   VEE +  +GL+  A+ K        +S G+++R++++  ++ +P VLLLDE
Sbjct: 108 LKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQQRVALARALVPEPKVLLLDE 162

Query: 61  PTSGLDS 67
           P S LD+
Sbjct: 163 PLSALDA 169

Length = 352

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 40.2 bits (95), Expect = 9e-04
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 5/41 (12%)

Query: 31  HLR-----GISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           HLR      +S GE++R+ I+  + T P  LLLDEP +G+D
Sbjct: 125 HLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVD 165

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 3/68 (4%)

Query: 4   DEINDIVEETIIKMGLQACAETKIG-NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPT 62
           + I+  VEE++ +  +    ETK   + + +  S G+++R+ I+  +  +P V+LLDEPT
Sbjct: 118 ELIDQRVEESLKQAAIWK--ETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT 175

Query: 63  SGLDSASA 70
           S LD  S+
Sbjct: 176 SALDPISS 183

Length = 251

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 32  LRGISSGEKKRLSISIEILT---QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVV 88
           L  +S GE +RL ++ E+L    +PT+ +LDEPT+GL +     +I VL+ +   G  VV
Sbjct: 807 LSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVV 866

Query: 89  CSIH 92
              H
Sbjct: 867 IIEH 870

Length = 1809

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQP 94
           S G ++R+ I++ +   P +L+ DEPT+ LD      ++ +LK +  + G  ++   H  
Sbjct: 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL 214

Query: 95  SSHLFYLFDDLLLLSNGETIYFGDAK 120
              +  + D + ++  G  +  G  +
Sbjct: 215 -GVVAEIADRVAVMYAGRIVEEGPVE 239

Length = 316

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 20/57 (35%), Positives = 36/57 (63%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSI 91
           +S G+K+R++I+  +  +P +++LDE TS LD      +I+ +K I  D ++ V SI
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISI 197

Length = 279

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           +S G+++RL I+  +  +P ++L DEPTS LD  S   +  ++  +  D  IV+ + +  
Sbjct: 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQ 214

Query: 95  SSHLFYLFDDLLLLSNGETIYFGDAK 120
            +     +    L+  GE I FG  +
Sbjct: 215 QAARISDYTGFFLM--GELIEFGQTR 238

Length = 258

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 33  RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           R +S GE++RL I+  +L    +LLLDEPT GLD
Sbjct: 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLD 507

Length = 574

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 32  LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           +R +S G++ R  I+  +L +P +L LDEPT GLD
Sbjct: 151 VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           G S GEKKR  I    L +P + +LDE  SGLD
Sbjct: 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLD 176

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 18/58 (31%), Positives = 34/58 (58%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92
           +S G+ +R++I+  +  +P +L+LDEPT+GLD      ++ + K +   G  +V   H
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH 203

Length = 280

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 14/30 (46%), Positives = 24/30 (80%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGL 65
           S GE++ L+I+  ++++P +LLLDEP+ GL
Sbjct: 138 SGGEQQMLAIARALMSRPKLLLLDEPSEGL 167

Length = 237

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 11/89 (12%)

Query: 33  RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI--ALDGRIVVCS 90
           R  S GE++RL+++  +L    ++LLDEPT GLD  +     Q+L  I   L  + ++  
Sbjct: 97  RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITER---QLLSLIFEVLKDKTLIWI 153

Query: 91  IHQPSSHLFYL--FDDLLLLSNGETIYFG 117
            H    HL  +   D +L L NG+ I  G
Sbjct: 154 TH----HLTGIEHMDKILFLENGKIIMQG 178

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 39.7 bits (94), Expect = 0.001
 Identities = 14/30 (46%), Positives = 24/30 (80%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGL 65
           S GE++ L+I+  ++++P +LLLDEP+ GL
Sbjct: 134 SGGEQQMLAIARALMSRPKLLLLDEPSEGL 163

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 39.3 bits (93), Expect = 0.001
 Identities = 15/53 (28%), Positives = 33/53 (62%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVV 88
           S G ++++ ++  +   P VL+LDEPT G+D  +   + ++++ +A  G+ V+
Sbjct: 106 SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 19/45 (42%), Positives = 30/45 (66%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLK 78
           G+S G+ +RL+++  +L    +LLLDEPT+ LD+ S   V+Q L 
Sbjct: 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALN 529

Length = 588

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 5/113 (4%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
           E   + +  + ++GL    + ++ +   R +S G+++ L ++  +   P VLLLDEPTS 
Sbjct: 135 EFRGVAQARLTEVGLWDAVKDRLSDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTSA 193

Query: 65  LDSASAFFVIQVLKCIA--LDGRIVVCSIHQPS--SHLFYLFDDLLLLSNGET 113
           LD  +   + + ++ +A  L   IV  ++ Q +  S    LF D  L+  G T
Sbjct: 194 LDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPT 246

Length = 276

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 15/34 (44%), Positives = 26/34 (76%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA 68
           +S G+++R++I   ++ +P+V LLDEP S LD+A
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167

Length = 369

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 21/80 (26%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           +S G+K+R++I+  +  +P +++LDE TS LD A    ++++++ +     + V SI   
Sbjct: 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203

Query: 95  SSHLFYLFDDLLLLSNGETI 114
                 + D +L+L +G+ +
Sbjct: 204 IDEA-NMADQVLVLDDGKLL 222

Length = 282

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           +S G+++RL I+  + T P +LL DEPTS LD
Sbjct: 162 LSGGQQQRLCIARALATDPEILLFDEPTSALD 193

Length = 265

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 15/34 (44%), Positives = 24/34 (70%)

Query: 33  RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           R  S G ++RL I+  ++T+P ++ +DEPT GLD
Sbjct: 147 RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD 180

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           G S GEKKR  I   +L +P + +LDEP SGLD
Sbjct: 144 GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176

Length = 251

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 31/84 (36%)

Query: 10  VEETIIKMGL---------------QACAETKIGNWHLRG-----ISSGEKKRLSISIEI 49
           VEE ++ MG                 A A+      HL G     +S GE++R+ ++  +
Sbjct: 93  VEE-VVAMGRAPHGLSRAEDDALVAAALAQV--DLAHLAGRDYPQLSGGEQQRVQLA-RV 148

Query: 50  LTQ-------PTVLLLDEPTSGLD 66
           L Q       P  LLLDEPTS LD
Sbjct: 149 LAQLWEPDGPPRWLLLDEPTSALD 172

Length = 258

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA 68
           +S G++ R+++   +L QP  LLLDEP S LD A
Sbjct: 135 LSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168

Length = 213

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 40.1 bits (95), Expect = 0.002
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 5/47 (10%)

Query: 23  AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
            + K+       +S GE++R+++   +L +P +LLLDEPT+ LD+ S
Sbjct: 157 WDAKVTK-----LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198

Length = 556

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 7/62 (11%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
           EI D +E   + +G Q     +  +     IS G+K+R++++  +LT   VL+LDE TS 
Sbjct: 589 EIKDDIEN--MPLGYQTELSEEGSS-----ISGGQKQRIALARALLTDSKVLILDESTSN 641

Query: 65  LD 66
           LD
Sbjct: 642 LD 643

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASA 70
           +S G+++RL I+  I  +P VLL+DEP S LD  S 
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPIST 197

Length = 274

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 17/49 (34%), Positives = 32/49 (65%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83
           +S G+ ++++I   +   P +++LDEPT+GLD  S   V+++LK +  D
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD 194

Length = 286

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95
           S G+++RL ++  +   P +L+LDEP S LD      + Q +  +   G   +   H+P 
Sbjct: 98  SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157

Query: 96  SHLFYLFDDLLLLSNGE 112
                  D +L+L +G 
Sbjct: 158 --TLASADRILVLEDGR 172

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 13/104 (12%)

Query: 12  ETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAF 71
           + + K+GL+   +  I  W L G   G+++R+ I+  +   P +LLLDEP   LD   AF
Sbjct: 111 QMLKKVGLEGAEKRYI--WQLSG---GQRQRVGIARALAANPQLLLLDEPFGALD---AF 162

Query: 72  FVIQ----VLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111
              Q    +LK     G+ V+   H     +F +  +L+LLS G
Sbjct: 163 TREQMQTLLLKLWQETGKQVLLITHDIEEAVF-MATELVLLSPG 205

Length = 255

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 18/98 (18%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA--------LDGR 85
           G S GEKKR  I    L    + +LDE  SGLD       I  LK IA         +  
Sbjct: 151 GFSGGEKKRNEILQMALLDSELAILDETDSGLD-------IDALKIIAEGINKLMTSENS 203

Query: 86  IVVCSIHQPSSHLFYLFDDLL-LLSNGETIYFGDAKMA 122
           I++ + +Q    L Y+  D + ++ NG+ I  GDA++A
Sbjct: 204 IILITHYQ--RLLDYIKPDYVHVMQNGKIIKTGDAELA 239

Length = 252

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 19/57 (33%), Positives = 34/57 (59%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSI 91
           +S G+K+R++I+  +  QP +++LDE TS LD      V++ ++ +     I V SI
Sbjct: 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSI 197

Length = 279

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 13/31 (41%), Positives = 26/31 (83%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           S G+++R++I+  ++ +P++++LDEPTS LD
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLD 457

Length = 529

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 8   DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           +I  + +  +GL+      I  W L G   G ++R+ I+  +  +P +LLLDEP   LD
Sbjct: 111 EIAHQMLALVGLEGAEHKYI--WQLSG---GMRQRVGIARALAVEPQLLLLDEPFGALD 164

Length = 259

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           +   EI   V E +  +GL+              +S G+++R++++  +  +P++LLLDE
Sbjct: 102 VPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDE 156

Query: 61  PTSGLD 66
           P S LD
Sbjct: 157 PLSALD 162

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           +S G+ +R++I+  +  +P +L LDEP +GLD      ++Q+ K     G  V+   H  
Sbjct: 146 LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM 205

Query: 95  SSHLFYLFDDLLLLSNGETI 114
                Y  DD+L+L +G+ I
Sbjct: 206 DDVAEYA-DDVLVLEHGKLI 224

Length = 287

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVV 88
            +S G+++RL I+  ++ +P +LL DE TS LD+ +   V + L+ + +  RIV+
Sbjct: 588 TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVT-RIVI 641

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 16/47 (34%), Positives = 30/47 (63%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81
           +S G+++R++I+  +  +P V+L DE TS LD      V+ V++ +A
Sbjct: 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLA 193

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 14/32 (43%), Positives = 25/32 (78%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           +S G+++R++I+  ++ +P VLL DEPT+ LD
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	437
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.94
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.93
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.93
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.93
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.92
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.92
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.92
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.92
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.91
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.91
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.9
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.9
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.9
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.9
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.9
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.9
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.89
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.89
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.89
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.89
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.89
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.89
COG1123	539	ATPase components of various ABC-type transport sy	99.89
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.89
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	99.89
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.89
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.89
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.89
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.89
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.88
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.88
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.88
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.88
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.88
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.88
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.88
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.88
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.88
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.88
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.88
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.88
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.88
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.88
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.88
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.88
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.88
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.88
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.88
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.88
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.88
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.88
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.88
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.88
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.88
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.88
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.88
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.88
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.88
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.88
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.88
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.88
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.87
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.87
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.87
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.87
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.87
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.87
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.87
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.87
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.87
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.87
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.87
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.87
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.87
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.87
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.87
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.87
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.87
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.87
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.87
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.87
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.87
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.87
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.87
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.87
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.87
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.87
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.87
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.87
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.87
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.87
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.87
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.87
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.87
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.87
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.87
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.87
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.87
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.86
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.86
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.86
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.86
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.86
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.86
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.86
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.86
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.86
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.86
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.86
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.86
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.86
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.86
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.86
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.86
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.86
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.86
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.86
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.86
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.86
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.86
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.86
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.85
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.85
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.85
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.85
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.85
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.85
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.85
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.85
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.85
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.85
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.85
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.85
PRK10908	222	cell division protein FtsE; Provisional	99.85
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.85
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.85
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.85
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.85
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.85
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK10938	490	putative molybdenum transport ATP-binding protein	99.85
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.85
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.85
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.85
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.85
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.85
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.85
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.85
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.85
COG4172	534	ABC-type uncharacterized transport system, duplica	99.85
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.85
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.84
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.84
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.84
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.84
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.84
COG1123	539	ATPase components of various ABC-type transport sy	99.84
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.84
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.84
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.84
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.84
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.84
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.84
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.84
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.84
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.84
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.84
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.84
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.84
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.84
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.84
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.84
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.84
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.84
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.83
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.83
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.83
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.83
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.83
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.83
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.83
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.83
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.83
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.82
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.82
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.82
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.82
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.82
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.82
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.82
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.82
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.82
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.82
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.82
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.82
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.82
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.82
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.82
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.81
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.81
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.81
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.81
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.81
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.81
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.81
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.81
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.81
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.81
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.81
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.81
COG4559	259	ABC-type hemin transport system, ATPase component	99.81
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.8
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.8
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.8
COG4172	534	ABC-type uncharacterized transport system, duplica	99.8
COG4987	573	CydC ABC-type transport system involved in cytochr	99.8
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.8
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.8
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.8
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.8
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.8
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.8
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.79
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.79
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.79
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.79
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.79
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.79
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.79
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.79
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.79
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.79
COG4988	559	CydD ABC-type transport system involved in cytochr	99.79
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.79
COG4181	228	Predicted ABC-type transport system involved in ly	99.79
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.79
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.78
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.78
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.78
PRK10938	490	putative molybdenum transport ATP-binding protein	99.78
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.78
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.78
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.78
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.78
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.78
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.78
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.78
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.78
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.78
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.78
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.78
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.78
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.78
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.77
cd03246	173	ABCC_Protease_Secretion This family represents the	99.77
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.77
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.77
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.77
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.76
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.76
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.76
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.76
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.76
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.76
PRK13409	590	putative ATPase RIL; Provisional	99.76
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.75
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.75
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.75
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.75
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.75
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.75
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.74
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.74
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.74
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.74
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.74
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.74
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.74
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.74
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.74
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.74
PRK13409	590	putative ATPase RIL; Provisional	99.74
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.73
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.73
PRK11147	635	ABC transporter ATPase component; Reviewed	99.73
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.73
PLN03073	718	ABC transporter F family; Provisional	99.72
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.72
PLN03232	1495	ABC transporter C family member; Provisional	99.72
PLN03073	718	ABC transporter F family; Provisional	99.71
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.71
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.71
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.71
PLN03232	1495	ABC transporter C family member; Provisional	99.71
PLN03130	1622	ABC transporter C family member; Provisional	99.71
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.71
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.7
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.7
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.7
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.7
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.69
PLN03130	1622	ABC transporter C family member; Provisional	99.69
PTZ00243	1560	ABC transporter; Provisional	99.69
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.69
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.68
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.68
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.68
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.68
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.67
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.67
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.67
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.67
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.67
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.66
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.66
PRK11147	635	ABC transporter ATPase component; Reviewed	99.65
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.65
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.64
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.64
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.64
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.64
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.63
COG0488	530	Uup ATPase components of ABC transporters with dup	99.62
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.62
PTZ00243	1560	ABC transporter; Provisional	99.61
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.6
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.6
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.59
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.58
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.58
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.56
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.56
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.54
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.53
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.52
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.5
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.47
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.46
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.46
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.43
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.42
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.41
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.41
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.4
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.38
COG0488	530	Uup ATPase components of ABC transporters with dup	99.37
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.37
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.36
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	99.35
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.35
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.34
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.32
PRK10869	553	recombination and repair protein; Provisional	99.3
PHA02562	562	46 endonuclease subunit; Provisional	99.29
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.29
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.26
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.23
KOG0062	582	consensus ATPase component of ABC transporters wit	99.23
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	99.21
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.2
COG4178	604	ABC-type uncharacterized transport system, permeas	99.2
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	99.19
KOG0062	582	consensus ATPase component of ABC transporters wit	99.18
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.15
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.14
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.14
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	99.11
PRK03918	880	chromosome segregation protein; Provisional	99.09
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.06
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.04
PRK01156	895	chromosome segregation protein; Provisional	98.99
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.97
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	98.95
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.9
PRK15066	257	inner membrane transport permease; Provisional	98.9
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.88
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.86
PRK00064	361	recF recombination protein F; Reviewed	98.84
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.82
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	98.82
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.79
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.77
PRK02224	880	chromosome segregation protein; Provisional	98.76
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.74
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	98.71
PRK14079	349	recF recombination protein F; Provisional	98.64
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	98.62
TIGR00611	365	recf recF protein. All proteins in this family for	98.59
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.5
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.49
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.49
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.48
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.47
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.44
TIGR01248	152	drrC daunorubicin resistance protein C. The model	98.42
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.42
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.36
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.32
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	98.28
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.24
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.23
COG0842	286	ABC-type multidrug transport system, permease comp	98.22
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.2
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.19
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.06
PRK13695	174	putative NTPase; Provisional	98.04
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	98.0
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.0
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.82
PRK13830	818	conjugal transfer protein TrbE; Provisional	97.79
COG1682	263	TagG ABC-type polysaccharide/polyol phosphate expo	97.76
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	97.65
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	97.61
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.59
PRK06067	234	flagellar accessory protein FlaH; Validated	97.49
PF12679	277	ABC2_membrane_2: ABC-2 family transporter protein	97.45
cd01128	249	rho_factor Transcription termination factor rho is	97.44
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	97.4
COG3910	233	Predicted ATPase [General function prediction only	97.37
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	97.35
PRK15176	264	Vi polysaccharide export inner membrane protein Ve	97.31
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.28
PF13175	415	AAA_15: AAA ATPase domain	97.19
PRK13891	852	conjugal transfer protein TrbE; Provisional	97.04
PF03379	215	CcmB: CcmB protein; InterPro: IPR003544 Within mit	96.99
COG4637	373	Predicted ATPase [General function prediction only	96.73
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	96.73
PF13166	712	AAA_13: AAA domain	96.43
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.27
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.25
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	96.24
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.22
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.09
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	95.81
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	95.71
TIGR01190	211	ccmB heme exporter protein CcmB. This model descri	95.53
COG1277	278	NosY ABC-type transport system involved in multi-c	95.48
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	95.2
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	95.02
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	94.98
PRK05399	854	DNA mismatch repair protein MutS; Provisional	94.97
PRK14088	440	dnaA chromosomal replication initiation protein; P	94.96
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	94.9
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	94.64
KOG0996	1293	consensus Structural maintenance of chromosome pro	94.62
PF12051	382	DUF3533: Protein of unknown function (DUF3533); In	93.92
COG4587	268	ABC-type uncharacterized transport system, permeas	93.82
TIGR03733	248	lanti_perm_MutG lantibiotic protection ABC transpo	93.67
COG4694	758	Uncharacterized protein conserved in bacteria [Fun	93.56
PRK08699	325	DNA polymerase III subunit delta'; Validated	93.13
PRK04296	190	thymidine kinase; Provisional	92.84
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	92.55
KOG0933	1174	consensus Structural maintenance of chromosome pro	92.14
COG1195	363	RecF Recombinational DNA repair ATPase (RecF pathw	92.07

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.2e-84  Score=692.38  Aligned_cols=411  Identities=36%  Similarity=0.670  Sum_probs=361.4

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      ++++|++++|++++++|||++|+||++|+...||+||||||||+||+||++||.||||||||||||+.++.++++.||++
T Consensus       137 ~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~l  216 (613)
T KOG0061|consen  137 LSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRL  216 (613)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHH
Confidence            36789999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHHHcCCCCCCCCCchHHHHHhhccCcccccccccc
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLK  160 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  160 (437)
                      |++|+|||+|+|||+++++++||++++|++|+++|+|+++++.+||++.|++||++.||+||++|+++.+ +....    
T Consensus       217 A~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~-~~~~~----  291 (613)
T KOG0061|consen  217 ARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVD-SGTRE----  291 (613)
T ss_pred             HhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccC-CCchh----
Confidence            9999999999999999999999999999999999999999999999999999999999999999998753 10000    


Q ss_pred             CCCCCCCCCCCCccccCChHHHHHHHHHHHhcchhhHHHHHHH-HHhhccCcccccccCCCCCHHHHHHHHHHHHHHHhh
Q 013741          161 SQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRV-RELAHNEQEETVLSKDRASWWKQLCILSHRSFLNML  239 (437)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~  239 (437)
                                      ...........+.++..+...+..... .....   .........++||.|++.|.+|.+++.+
T Consensus       292 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~q~~~L~~R~~~~~~  352 (613)
T KOG0061|consen  292 ----------------LEEAVRIAKLINKFSQTDNLKKTLEALEKSLST---SKKVEIGTSPSWWTQFKILLKRSLKNIR  352 (613)
T ss_pred             ----------------HHhHHHHHHHhhhccccchhhhhHHHHhhhccc---ccccccccCCcHHHHHHHHHHHHhHHHh
Confidence                            000111112222222111111100000 00000   0000111278999999999999999999


Q ss_pred             hChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHHHHhh-hhhhhHHHHHHHhhhccCCCCcchHH
Q 013741          240 RDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSV-GGLPSFIEEHKASYRERISCHYGEAV  318 (437)
Q Consensus       240 Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~~~~~-~~~~~~~~er~v~~rE~~~g~Y~~~~  318 (437)
                      |||.+...|+++.+++|+++|++||+++++..++++|.|+++|+..++.+.++ .+++.|+.||++|.||+.+|+|+.++
T Consensus       353 R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~  432 (613)
T KOG0061|consen  353 RDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSS  432 (613)
T ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHH
Confidence            99999999999999999999999999999999999999999999998877665 47999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 013741          319 FVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMM  398 (437)
Q Consensus       319 y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~  398 (437)
                      |++|++++++|+.++.+++|++|+|||+|++++..+|++|++++++..+++++++.+++++.||..+|++++++++..++
T Consensus       433 y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~  512 (613)
T KOG0061|consen  433 YYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFL  512 (613)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccccCCCCcccccccccccccChhHHHHHHhhhhcC
Q 013741          399 MVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF  437 (437)
Q Consensus       399 lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NEf  437 (437)
                      +|+||+++.++||.| |+| ++|+|+++|++||+++|||
T Consensus       513 l~~G~fi~~~~ip~~-~~w-~~~~S~~ry~~e~l~~n~~  549 (613)
T KOG0061|consen  513 LFGGFFINFDSIPKY-FRW-ISYLSYFRYAFEALLINQF  549 (613)
T ss_pred             HHhhhhcCcccccHH-HHH-HHHHhHHHHHHHHHHHHHh
Confidence            999999999999985 788 9999999999999999997

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=9e-82  Score=676.57  Aligned_cols=409  Identities=25%  Similarity=0.433  Sum_probs=352.0

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++++++++++++.+||++++||.+|+...++||||||||++||++|+.+|++|+|||||+|||+.++.++++.|+++++
T Consensus       175 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~  254 (659)
T PLN03211        175 KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ  254 (659)
T ss_pred             HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Confidence            45667789999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHHHcCCCCCCCCCchHHHHHhhccCccccccccccCC
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQ  162 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  162 (437)
                      +|+|||+++|||+.+++++||++++|++|+++|.|+++++.+||+++|++||.+.|||||++++++.+.+.  ...    
T Consensus       255 ~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~--~~~----  328 (659)
T PLN03211        255 KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQT--DGV----  328 (659)
T ss_pred             CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccC--CCc----
Confidence            89999999999988899999999999999999999999999999999999999999999999998653210  000    


Q ss_pred             CCCCCCCCCCccccCChHHHHHHHHHHHhcchhhHHHHHHHHHh--hc-c-------Ccccc--cccCCCCCHHHHHHHH
Q 013741          163 APTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVREL--AH-N-------EQEET--VLSKDRASWWKQLCIL  230 (437)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~--~~-~-------~~~~~--~~~~~~~~~~~Q~~~L  230 (437)
                      ...+            ..+..+.+.+.|++.. ..+..+..+..  .. .       .....  ....+.++||+|+++|
T Consensus       329 ~~~~------------~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L  395 (659)
T PLN03211        329 SERE------------KPNVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSIL  395 (659)
T ss_pred             cccc------------cchHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHH
Confidence            0000            0111233445554321 11111111100  00 0       00000  0112457899999999


Q ss_pred             HHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHHH-HhhhhhhhHHHHHHHhhhcc
Q 013741          231 SHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLIC-LSVGGLPSFIEEHKASYRER  309 (437)
Q Consensus       231 ~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~~-~~~~~~~~~~~er~v~~rE~  309 (437)
                      ++|++++ +||+.+...|+++.+++|+++|++||+++  +.++++|.|++||++.++.+ .++..++.|+.||++|+||+
T Consensus       396 ~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~  472 (659)
T PLN03211        396 LQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKER  472 (659)
T ss_pred             HHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence            9999998 89999999999999999999999999985  67899999999998887665 44678999999999999999


Q ss_pred             CCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 013741          310 ISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGV  389 (437)
Q Consensus       310 ~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~~  389 (437)
                      .+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++++|++|++++++..++++++|+++++++||+.+|+.+
T Consensus       473 ~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~  552 (659)
T PLN03211        473 ASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTI  552 (659)
T ss_pred             hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhhhhcC
Q 013741          390 GTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF  437 (437)
Q Consensus       390 ~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NEf  437 (437)
                      +++++.++++||||+++  +||+| |+| ++|+||++|++||+++|||
T Consensus       553 ~~~~~~~~~lfsGf~i~--~ip~~-~~W-~~ylS~~~y~~eal~~nef  596 (659)
T PLN03211        553 VTVTMLAFVLTGGFYVH--KLPSC-MAW-IKYISTTFYSYRLLINVQY  596 (659)
T ss_pred             HHHHHHHHHHHhhhhHh--hchHH-HHH-HHHhCHHHHHHHHHHHHhc
Confidence            99999999999999997  79986 999 9999999999999999998

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=9.5e-81  Score=667.68  Aligned_cols=412  Identities=28%  Similarity=0.537  Sum_probs=369.0

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCc-ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNW-HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~-~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      ++++++++++++++.+||.+++||.+|+. ..++|||||||||+||++|+++|++++|||||+|||+.++.++++.|+++
T Consensus       133 ~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l  212 (617)
T TIGR00955       133 TKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGL  212 (617)
T ss_pred             CHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHH
Confidence            35677789999999999999999999986 37899999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHHHcCCCCCCCCCchHHHHHhhccCcccccccccc
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLK  160 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  160 (437)
                      +++|+|+|+++|||+.+++++||++++|++|+++|.|+++++.+||+++|++||++.||+||++++++.+.+.       
T Consensus       213 ~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~-------  285 (617)
T TIGR00955       213 AQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGS-------  285 (617)
T ss_pred             HhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccc-------
Confidence            9889999999999998999999999999999999999999999999999999999999999999987643211       


Q ss_pred             CCCCCCCCCCCCccccCChHHHHHHHHHHHhcchhhHHHHHHHHHhhccCc-----cc-ccccCCCCCHHHHHHHHHHHH
Q 013741          161 SQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQ-----EE-TVLSKDRASWWKQLCILSHRS  234 (437)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~Q~~~L~~R~  234 (437)
                           +          ....+..+++.+.|+++..+++..+........++     .. .....+..+|++|+++|++|+
T Consensus       286 -----~----------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~  350 (617)
T TIGR00955       286 -----E----------NESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRS  350 (617)
T ss_pred             -----c----------cchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHH
Confidence                 0          00123345677788877666555444332211110     00 012345689999999999999


Q ss_pred             HHHhhhChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHHHHh-hhhhhhHHHHHHHhhhccCCCC
Q 013741          235 FLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLS-VGGLPSFIEEHKASYRERISCH  313 (437)
Q Consensus       235 ~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~~~~-~~~~~~~~~er~v~~rE~~~g~  313 (437)
                      +++.+|||.++..|+++.+++|+++|++|++++++++++++|.|++|++..++.+.+ ...++.++.||++|+||+.+|+
T Consensus       351 ~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~  430 (617)
T TIGR00955       351 WLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGL  430 (617)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence            999999999999999999999999999999999999999999999999888777765 4668899999999999999999


Q ss_pred             cchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 013741          314 YGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTAL  393 (437)
Q Consensus       314 Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~  393 (437)
                      |++++|++|++++|+|+.++.+++|++|+|||+|+++++++||+|++++++..+++.++++++++++|+..+|+.+++++
T Consensus       431 Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~  510 (617)
T TIGR00955       431 YRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPF  510 (617)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccCCCCcccccccccccccChhHHHHHHhhhhcC
Q 013741          394 IVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF  437 (437)
Q Consensus       394 ~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NEf  437 (437)
                      +.++++|+||+++.++||.| |+| ++|+||++|++||++.|||
T Consensus       511 ~~~~~lf~G~~i~~~~ip~~-~~W-~~~isp~~ya~~al~~nef  552 (617)
T TIGR00955       511 VIPFLLFGGFFINSDSIPVY-FKW-LSYLSWFRYGNEGLLINQW  552 (617)
T ss_pred             HHHHHHHhhcccChhhccHH-HHH-HHHcCHHHHHHHHHHHHHh
Confidence            99999999999999999985 999 9999999999999999998

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=5.4e-80  Score=707.99  Aligned_cols=415  Identities=22%  Similarity=0.340  Sum_probs=369.6

Q ss_pred             HHHHHH-HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            4 DEINDI-VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         4 ~~~~~~-v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++.++ ++++++.+||++++||++|+..+++|||||||||+||++|+++|++++|||||+|||+.++.++++.|+++++
T Consensus       178 ~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~  257 (1394)
T TIGR00956       178 EEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSAN  257 (1394)
T ss_pred             HHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHH
Confidence            444444 5779999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHHHcCCCCCCCCCchHHHHHhhccCccccccccccC
Q 013741           83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKS  161 (437)
Q Consensus        83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  161 (437)
                       .|+|+|+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||++++++.+.++......  
T Consensus       258 ~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e--  335 (1394)
T TIGR00956       258 ILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYE--  335 (1394)
T ss_pred             hcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhcccccc--
Confidence             59999999999998999999999999999999999999999999999999999999999999987654322110000  


Q ss_pred             CCCCCCCCCCCccccCChHHHHHHHHHHHhcchhhHHHHHHHHHhhccC---------------cc---cccccCCCCCH
Q 013741          162 QAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNE---------------QE---ETVLSKDRASW  223 (437)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~---------------~~---~~~~~~~~~~~  223 (437)
                         ...        .    ...+++.+.|++|+.+++..+.++......               ..   ......+..|+
T Consensus       336 ---~~~--------~----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  400 (1394)
T TIGR00956       336 ---KKV--------P----RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSF  400 (1394)
T ss_pred             ---ccC--------C----CCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCH
Confidence               000        0    112457888888877666555544321110               00   00123466899


Q ss_pred             HHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 013741          224 WKQLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHK  303 (437)
Q Consensus       224 ~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~~~~~~~~~~~~~er~  303 (437)
                      |+|+++|++|++++.+|||.+++.|+++.+++|+++|++||+++++++++++|.|++||++.+.+++++..++.++.||+
T Consensus       401 ~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~  480 (1394)
T TIGR00956       401 SMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARP  480 (1394)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888888899999


Q ss_pred             HhhhccCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 013741          304 ASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNV  383 (437)
Q Consensus       304 v~~rE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~  383 (437)
                      ||+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.+++.++++++++++||.
T Consensus       481 i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~  560 (1394)
T TIGR00956       481 IVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTL  560 (1394)
T ss_pred             ceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhhhhcC
Q 013741          384 LMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF  437 (437)
Q Consensus       384 ~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NEf  437 (437)
                      .+|+.++++++.++++|+||++|.++||.| |+| ++|+||++|++||+++|||
T Consensus       561 ~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~-~~W-~~yisp~~yafeal~~nef  612 (1394)
T TIGR00956       561 SEAMTPAAILLLALSIYTGFAIPRPSMLGW-SKW-IYYVNPLAYAFESLMVNEF  612 (1394)
T ss_pred             HHHHHHHHHHHHHHHHHcccccChhhccHH-HHH-HHHcCHHHHHHHHHHHhhh
Confidence            999999999999999999999999999985 999 9999999999999999998

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=8.5e-80  Score=668.08  Aligned_cols=406  Identities=28%  Similarity=0.457  Sum_probs=369.0

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCC-CEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQP-TVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p-~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      ++.+|+.+.||++++.++|++++|..||++. +|||.+||||++||+||++|| .||||||||||||+.+|..+++.+|+
T Consensus       897 v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrk  975 (1391)
T KOG0065|consen  897 VSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRK  975 (1391)
T ss_pred             CCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHH
Confidence            3678888999999999999999999999988 999999999999999999999 89999999999999999999999999


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEe-CCeEEEeeChh----HHHHHHHHcC-CCCCCCCCchHHHHHhhccCccc
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLS-NGETIYFGDAK----MAVKFFAEAG-FPCPSRRNPSDHFLRCINSDFDK  153 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~-~G~~v~~G~~~----~~~~~f~~~g-~~~~~~~~~~d~~~~~~~~~~~~  153 (437)
                      +++.|+||+||||||+.++++.||++++|+ +|++||+||..    .+++||+++| .+||+..|||||++|++....+.
T Consensus       976 la~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~ 1055 (1391)
T KOG0065|consen  976 LADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEA 1055 (1391)
T ss_pred             HHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhccccccc
Confidence            999999999999999999999999999997 79999999985    4677999986 89999999999999998643211


Q ss_pred             cccccccCCCCCCCCCCCCccccCChHHHHHHHHHHHhcchhhHHHHHHHHHhhccCcc-ccc---ccCCCCCHHHHHHH
Q 013741          154 VAGSSLKSQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQE-ETV---LSKDRASWWKQLCI  229 (437)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~Q~~~  229 (437)
                                                 +...++.+.|++|+.++++.+.+++....... ..+   ++++++|+|.|++.
T Consensus      1056 ---------------------------~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~ 1108 (1391)
T KOG0065|consen 1056 ---------------------------SLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKL 1108 (1391)
T ss_pred             ---------------------------ccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHH
Confidence                                       11136899999999999999988887654333 211   45678999999999


Q ss_pred             HHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHHHHhhhh-hhhHHHHHHHhhhc
Q 013741          230 LSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGG-LPSFIEEHKASYRE  308 (437)
Q Consensus       230 L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~~~~~~~-~~~~~~er~v~~rE  308 (437)
                      +++|++..+||+|.+.++|++..++.|+++|+.||+.|++.+++||..++.|..+++......+. .+....||.+++||
T Consensus      1109 ~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE 1188 (1391)
T KOG0065|consen 1109 CLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRE 1188 (1391)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeee
Confidence            99999999999999999999999999999999999999999999999998887766655444443 44556799999999


Q ss_pred             cCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 013741          309 RISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMG  388 (437)
Q Consensus       309 ~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~  388 (437)
                      +++|+||+.+|++|++++|+|+.++++++|.+++|+|+|+..++.+|++|++..+++.+....+|+++.+++||.++|.+
T Consensus      1189 ~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav 1268 (1391)
T KOG0065|consen 1189 RASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAV 1268 (1391)
T ss_pred             cccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhhhhc
Q 013741          389 VGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDI  436 (437)
Q Consensus       389 ~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NE  436 (437)
                      +.+.+..++.+|||+++|++.||.| |+| |||+||+.|.+++++.-+
T Consensus      1269 ~~s~~~s~~~~F~G~l~p~~~iP~f-W~w-my~lsP~ty~l~gli~~~ 1314 (1391)
T KOG0065|consen 1269 IASLFFSFWNLFSGFLQPRSLIPKF-WIW-MYYLSPVTYTLEGLISSQ 1314 (1391)
T ss_pred             HHHHHHHHHHHhcccccccccccce-eee-eeecCcHHHHHHHHHHHH
Confidence            9999999999999999999999995 999 999999999999998643

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=2.9e-78  Score=691.91  Aligned_cols=406  Identities=24%  Similarity=0.410  Sum_probs=364.1

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      ++++.++|+++++.+||.+++|+.+|++.+++|||||||||+||++|+++|++|||||||+|||+.++..+++.|+++++
T Consensus       988 ~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~ 1067 (1470)
T PLN03140        988 KEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1067 (1470)
T ss_pred             HHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence            45667789999999999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeC-CeEEEeeCh----hHHHHHHHHc-CCC-CCCCCCchHHHHHhhccCccccc
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSN-GETIYFGDA----KMAVKFFAEA-GFP-CPSRRNPSDHFLRCINSDFDKVA  155 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~-G~~v~~G~~----~~~~~~f~~~-g~~-~~~~~~~~d~~~~~~~~~~~~~~  155 (437)
                      +|+|||+++|||+.+++++||++++|++ |+++|+|++    +++.+||+++ |++ ||+..|||||++++++.+.+.  
T Consensus      1068 ~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~-- 1145 (1470)
T PLN03140       1068 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV-- 1145 (1470)
T ss_pred             CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc--
Confidence            9999999999999889999999999996 899999996    5799999997 664 999999999999987532110  


Q ss_pred             cccccCCCCCCCCCCCCccccCChHHHHHHHHHHHhcchhhHHHHHHHHHhhccCccccc---ccCCCCCHHHHHHHHHH
Q 013741          156 GSSLKSQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETV---LSKDRASWWKQLCILSH  232 (437)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Q~~~L~~  232 (437)
                                               ....++.+.|++|+.+++..+.+++.........+   ...+.+++|+|+++|++
T Consensus      1146 -------------------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~ 1200 (1470)
T PLN03140       1146 -------------------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLW 1200 (1470)
T ss_pred             -------------------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHH
Confidence                                     00125788899998887776665544332111111   24567899999999999


Q ss_pred             HHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCCCCCh---hhHhhhhHHHHHHHHHHHHHh-hhhhhhHHHHHHHhhhc
Q 013741          233 RSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSN---PAIYGRPKCVAFIYGFLICLS-VGGLPSFIEEHKASYRE  308 (437)
Q Consensus       233 R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~---~~i~~r~~~l~f~~~~~~~~~-~~~~~~~~~er~v~~rE  308 (437)
                      |+++++||||.+.++|+++.+++|+++|++||++++++   +++++|.|++|+++.++.+.. .+.+|.+..||++|+||
T Consensus      1201 R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~RE 1280 (1470)
T PLN03140       1201 KQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRE 1280 (1470)
T ss_pred             HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999865   567788999888887776644 45679999999999999


Q ss_pred             cCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 013741          309 RISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMG  388 (437)
Q Consensus       309 ~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~  388 (437)
                      |++|+|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.+++.++|+++++++||..+|..
T Consensus      1281 r~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~ 1360 (1470)
T PLN03140       1281 RAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAI 1360 (1470)
T ss_pred             HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhhhhcC
Q 013741          389 VGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF  437 (437)
Q Consensus       389 ~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NEf  437 (437)
                      ++++++.++++||||++|.++||.| |+| ++|+||++|+++|++.|||
T Consensus      1361 ~~~~~~~~~~lf~Gf~i~~~~iP~~-~~W-~~~isp~~y~~~~l~~~~f 1407 (1470)
T PLN03140       1361 FAAAFYGLFNLFSGFFIPRPKIPKW-WVW-YYWICPVAWTVYGLIVSQY 1407 (1470)
T ss_pred             HHHHHHHHHHHHeeeccChHHCchH-HHH-HHHcCHHHHHHhhhHHHHh
Confidence            9999999999999999999999985 999 9999999999999999998

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=2.6e-78  Score=692.31  Aligned_cols=412  Identities=21%  Similarity=0.375  Sum_probs=363.4

Q ss_pred             HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEE
Q 013741            9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIV   87 (437)
Q Consensus         9 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tv   87 (437)
                      .++++++.+||++|+||.+|+..+++|||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++ .|+|+
T Consensus       311 ~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tv  390 (1470)
T PLN03140        311 ITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATV  390 (1470)
T ss_pred             HHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEE
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999987 68999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHHHcCCCCCCCCCchHHHHHhhccCccccccccccCCCCCCC
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEI  167 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (437)
                      |+++|||+.+++++||+|++|++|+++|+||++++.+||+++|++||++.|||||++++++.+..+..  .    .....
T Consensus       391 iis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~--~----~~~~~  464 (1470)
T PLN03140        391 LMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQY--W----ADRNK  464 (1470)
T ss_pred             EEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhh--h----hccCC
Confidence            99999999999999999999999999999999999999999999999999999999998764321100  0    00000


Q ss_pred             CCCCCccccCChHHHHHHHHHHHhcchhhHHHHHHHHHhhccC---cccccccCCCCCHHHHHHHHHHHHHHHhhhChHH
Q 013741          168 PMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNE---QEETVLSKDRASWWKQLCILSHRSFLNMLRDMGY  244 (437)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~  244 (437)
                           +....    ..+++.+.|+++..+++..++++......   ......+.+..+++.|++.|++|+++.++||+..
T Consensus       465 -----p~~~~----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~  535 (1470)
T PLN03140        465 -----PYRYI----SVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFV  535 (1470)
T ss_pred             -----ccccC----CHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHH
Confidence                 00001    13457888998887766655544322111   1111124567899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCh---hhHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhccCCCCcchHHHHH
Q 013741          245 YWLRIVFYVLVSITVGILYLNVGLSN---PAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASYRERISCHYGEAVFVL  321 (437)
Q Consensus       245 ~~~r~~~~~~~~li~G~~f~~~~~~~---~~i~~r~~~l~f~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~~~y~l  321 (437)
                      +..|+++.+++|+++|++||+++.++   .+.+.+.|++||++.+.++++++.++.++.||+||+|||+.++|++++|++
T Consensus       536 ~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~l  615 (1470)
T PLN03140        536 YVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTL  615 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHH
Confidence            99999999999999999999997543   345567788888888888888888999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhh
Q 013741          322 SNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVS  401 (437)
Q Consensus       322 a~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~  401 (437)
                      |++++++|+.++.+++|++|+|||+||++++++||+|+++++++.+++.++++++++++|++.+|+.++++++.++++|+
T Consensus       616 a~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~  695 (1470)
T PLN03140        616 PTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLG  695 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCcccccccccccccChhHHHHHHhhhhcC
Q 013741          402 PVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF  437 (437)
Q Consensus       402 Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NEf  437 (437)
                      ||++|.++||+| |+| ++|+||++||+||+++|||
T Consensus       696 Gf~i~~~~ip~w-~~W-~~yisp~~Ya~eal~~NEf  729 (1470)
T PLN03140        696 GFILPKGEIPNW-WEW-AYWVSPLSYGFNALAVNEM  729 (1470)
T ss_pred             cceechHhCchH-HHH-HHHhCHHHHHHHHHHHHhc
Confidence            999999999985 999 9999999999999999998

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=7.2e-76  Score=673.92  Aligned_cols=406  Identities=26%  Similarity=0.423  Sum_probs=360.9

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPT-VLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~-ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      ++++++++|+++++.+||.+++|+.+|+. .++|||||||||+||++|+.+|+ +|||||||+|||+.++.++++.|+++
T Consensus       870 ~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~l  948 (1394)
T TIGR00956       870 SKSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL  948 (1394)
T ss_pred             CHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence            34567789999999999999999999864 34899999999999999999997 99999999999999999999999999


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCC-eEEEeeCh----hHHHHHHHHcCC-CCCCCCCchHHHHHhhccCcccc
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG-ETIYFGDA----KMAVKFFAEAGF-PCPSRRNPSDHFLRCINSDFDKV  154 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G-~~v~~G~~----~~~~~~f~~~g~-~~~~~~~~~d~~~~~~~~~~~~~  154 (437)
                      +++|+|||+++|||+..+++.||++++|++| +++|+|++    +++.+||++.|+ +||++.|||||++|+++.+.+. 
T Consensus       949 a~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~- 1027 (1394)
T TIGR00956       949 ADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGA- 1027 (1394)
T ss_pred             HHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhccccc-
Confidence            9999999999999998788999999999987 99999997    578999999996 9999999999999987642110 


Q ss_pred             ccccccCCCCCCCCCCCCccccCChHHHHHHHHHHHhcchhhHHHHHHHHHhhccCc-c----c-ccccCCCCCHHHHHH
Q 013741          155 AGSSLKSQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQ-E----E-TVLSKDRASWWKQLC  228 (437)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~-~----~-~~~~~~~~~~~~Q~~  228 (437)
                                                +..+++.+.|+.|...++..+.++....... .    . ...+.++++||+|++
T Consensus      1028 --------------------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~ 1081 (1394)
T TIGR00956      1028 --------------------------HANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFK 1081 (1394)
T ss_pred             --------------------------chhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHH
Confidence                                      0012467788888776666555444322111 0    0 112356799999999


Q ss_pred             HHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-hh
Q 013741          229 ILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKAS-YR  307 (437)
Q Consensus       229 ~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~~~~~~~~~~~~~er~v~-~r  307 (437)
                      +|++|+++++||||.+.+.|+++.+++|+++|++||++++++.++++|.|++|+++.+..+.....+|.|+.||.+| +|
T Consensus      1082 ~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~R 1161 (1394)
T TIGR00956      1082 LVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVR 1161 (1394)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998887766666667789999999886 99


Q ss_pred             ccCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHH-------HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013741          308 ERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSH-------YCHFCLSLFCCVSIVETCMMVVALLV  380 (437)
Q Consensus       308 E~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~-------f~~f~l~~~~~~~~~~~~~~~i~~~~  380 (437)
                      |+.+|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++..       |++|++++++...+++++|+++++++
T Consensus      1162 E~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~ 1241 (1394)
T TIGR00956      1162 ERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFN 1241 (1394)
T ss_pred             HhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999988866       99999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhhhhcC
Q 013741          381 PNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF  437 (437)
Q Consensus       381 ~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NEf  437 (437)
                      |+..+|+.++++++.++++||||+++.++||.| |+| ++|+||++|+++|++.|||
T Consensus      1242 ~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~-~~w-~~~~sp~~y~~~~l~~~~~ 1296 (1394)
T TIGR00956      1242 PNADNAAVLASLLFTMCLSFCGVLAPPSRMPGF-WIF-MYRCSPFTYLVQALLSTGL 1296 (1394)
T ss_pred             CcHHHHHHHHHHHHHHHHHhccccCChhHCcHH-HhH-HHhcCHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999986 999 9999999999999999997

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1e-74  Score=628.59  Aligned_cols=418  Identities=26%  Similarity=0.418  Sum_probs=376.1

Q ss_pred             HHHHHH-HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            3 NDEIND-IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         3 ~~~~~~-~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++|+.+ .+|.+++.+||+||+||+|||...||+||||||||++|.+++.+|+++++||+|+|||+.++.++++.||+++
T Consensus       228 R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a  307 (1391)
T KOG0065|consen  228 RREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLA  307 (1391)
T ss_pred             HHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHH
Confidence            444443 7889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHHHcCCCCCCCCCchHHHHHhhccCcccccccccc
Q 013741           82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLK  160 (437)
Q Consensus        82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  160 (437)
                      + .+.|.++++|||+.+++++||+|++|++|+++|+||.+++++||+++|+.||+++++|||+.++++.. ++.....  
T Consensus       308 ~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k-~~~~~~~--  384 (1391)
T KOG0065|consen  308 HITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKK-DQEQYWN--  384 (1391)
T ss_pred             hhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCc-ccccccc--
Confidence            8 78999999999999999999999999999999999999999999999999999999999999987621 1100000  


Q ss_pred             CCCCCCCCCCCCccccCChHHHHHHHHHHHhcchhhHHHHHHHHHhhccCccc---ccccCCCCCHHHHHHHHHHHHHHH
Q 013741          161 SQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQEE---TVLSKDRASWWKQLCILSHRSFLN  237 (437)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Q~~~L~~R~~~~  237 (437)
                              ....+....    ...++.+.|.+++.+++....++....+....   ...+.+..+.|.|++.|++|.+..
T Consensus       385 --------~~~~~~~~~----~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l  452 (1391)
T KOG0065|consen  385 --------KRSKPYPYT----SVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLL  452 (1391)
T ss_pred             --------ccCCCcccC----CHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHH
Confidence                    000011111    12567889999998888777766544332111   113567789999999999999999


Q ss_pred             hhhChHHHHHHHHHHHHHHHHHHHHhcCCC-CChhhHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhccCCCCcch
Q 013741          238 MLRDMGYYWLRIVFYVLVSITVGILYLNVG-LSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASYRERISCHYGE  316 (437)
Q Consensus       238 ~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~-~~~~~i~~r~~~l~f~~~~~~~~~~~~~~~~~~er~v~~rE~~~g~Y~~  316 (437)
                      +.||..++..+.++.+++|+++|++|++.+ .+..+...|.|++||...+.++++++.++..++.||||+|||...+|++
T Consensus       453 ~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p  532 (1391)
T KOG0065|consen  453 MKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPP  532 (1391)
T ss_pred             HhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccCh
Confidence            999999999999999999999999999999 7788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 013741          317 AVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVL  396 (437)
Q Consensus       317 ~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~  396 (437)
                      ++|.++..++++|+.++.+++|.+|+||++||.++|++||+++|+++++..++.+++++++++++++..|++++++.+..
T Consensus       533 ~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~  612 (1391)
T KOG0065|consen  533 WAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLV  612 (1391)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccCCCCcccccccccccccChhHHHHHHhhhhcC
Q 013741          397 MMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF  437 (437)
Q Consensus       397 ~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NEf  437 (437)
                      +.+++||+||.++||+| |+| ++|+||+.|++|++|+|||
T Consensus       613 i~m~~Gf~Ip~~~m~~W-~~W-i~yinPl~Y~fesl~~NEF  651 (1391)
T KOG0065|consen  613 LFMYGGFVIPKKDMPPW-FRW-IAYINPLMYAFESLMSNEF  651 (1391)
T ss_pred             HHHHcceeeeccccchH-HHH-HHHHCHHHHHHHHHHHhhh
Confidence            99999999999999985 999 9999999999999999998

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.94  E-value=2.3e-26  Score=208.75  Aligned_cols=116  Identities=26%  Similarity=0.384  Sum_probs=108.5

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      ++++|.+++..++|+.+||.+.+|.     ++..|||||||||+|||+|+.+|+++++|||||.|||....++.+.+++|
T Consensus       108 ~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L  182 (240)
T COG1126         108 LSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL  182 (240)
T ss_pred             CCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence            4678888999999999999988875     56789999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |++|.|.||++|.. ....+.+|||++|++|+++..|++++.
T Consensus       183 A~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~  223 (240)
T COG1126         183 AEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEF  223 (240)
T ss_pred             HHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHH
Confidence            99999999999996 578899999999999999999988855

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=3.9e-26  Score=217.17  Aligned_cols=116  Identities=27%  Similarity=0.369  Sum_probs=108.3

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      ++++++++||.++++.+||++.+|.     ++..|||||||||+|||||+.+|+||++|||||.|||.+...+.+.|+++
T Consensus       113 ~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~I  187 (339)
T COG1135         113 VPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDI  187 (339)
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence            4789999999999999999987765     56789999999999999999999999999999999999999999999999


Q ss_pred             Hh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      .+ .|.||++++|++ .-+-+.||||.+|++|+++..|+..++
T Consensus       188 n~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~v  229 (339)
T COG1135         188 NRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEV  229 (339)
T ss_pred             HHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHh
Confidence            87 699999999996 578999999999999999999998765

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.93  E-value=9.6e-26  Score=202.13  Aligned_cols=118  Identities=27%  Similarity=0.449  Sum_probs=111.6

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +++++.+++.+++.+.|+|.++.|+.+|     ++|-|+||||+||++|+++|++++|||||||||..+...+.+.++++
T Consensus       105 l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~  179 (245)
T COG4555         105 LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL  179 (245)
T ss_pred             hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHh
Confidence            4677889999999999999999999998     59999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      .++|++||.++|.. .++..+||+|++|++|++++.|++++...
T Consensus       180 k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~  222 (245)
T COG4555         180 KNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDA  222 (245)
T ss_pred             hcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence            99999999999995 58999999999999999999999987654

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.93  E-value=1.6e-25  Score=219.35  Aligned_cols=118  Identities=34%  Similarity=0.519  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.+++++++++.+||.+.+++++     ++||+|||||++||++|+++|+++||||||+|||+.++.++.+.|++++++
T Consensus       111 ~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~  185 (293)
T COG1131         111 EEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE  185 (293)
T ss_pred             hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC
Confidence            345679999999999998555545     579999999999999999999999999999999999999999999999997


Q ss_pred             C-CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHH
Q 013741           84 G-RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFA  127 (437)
Q Consensus        84 g-~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~  127 (437)
                      | +||++|+|++. ++..+||+|++|++|++++.|+.+++...+.
T Consensus       186 g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~  229 (293)
T COG1131         186 GGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEELKEKFG  229 (293)
T ss_pred             CCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHHhhc
Confidence            7 89999999975 7899999999999999999999998776554

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=4.9e-25  Score=207.82  Aligned_cols=111  Identities=26%  Similarity=0.491  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      ++.|++.|+.+|+.+.+|..+|.     |||||+|||.|||+|+.+|++|+|||||+|+|+.++..+.++|++++++|+|
T Consensus       117 ~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~t  191 (254)
T COG1121         117 KEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKT  191 (254)
T ss_pred             HHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence            68999999999999999999984     9999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      |++++|++. .+.+.||+|++|+ +++++.|+++++.+
T Consensus       192 Il~vtHDL~-~v~~~~D~vi~Ln-~~~~~~G~~~~~~~  227 (254)
T COG1121         192 VLMVTHDLG-LVMAYFDRVICLN-RHLIASGPPEEVLT  227 (254)
T ss_pred             EEEEeCCcH-HhHhhCCEEEEEc-CeeEeccChhhccC
Confidence            999999985 6899999999995 57889999987643

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.92  E-value=7.3e-25  Score=201.88  Aligned_cols=119  Identities=26%  Similarity=0.403  Sum_probs=109.0

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +++++.++.|..-|+..||...    +.+.++.+||||||||+++|||++.||+++|+||||+||||.++..+.++++++
T Consensus       116 lp~~~i~~lv~~KL~~VGL~~~----~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L  191 (263)
T COG1127         116 LPESLIRELVLMKLELVGLRGA----AADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIREL  191 (263)
T ss_pred             CCHHHHHHHHHHHHHhcCCChh----hhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHH
Confidence            4678888999999999999865    244578899999999999999999999999999999999999999999999999


Q ss_pred             Hh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      .+ -|.|+++++|+.. +++..+||+++|.+|+++..|+++++.+
T Consensus       192 ~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv~~~Gt~~el~~  235 (263)
T COG1127         192 NDALGLTVIMVTHDLD-SLLTIADRVAVLADGKVIAEGTPEELLA  235 (263)
T ss_pred             HHhhCCEEEEEECChH-HHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence            98 5899999999974 7999999999999999999999998753

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=5.8e-25  Score=207.64  Aligned_cols=118  Identities=26%  Similarity=0.455  Sum_probs=108.0

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      ++++|.+++|+++++.+||.+.++...     ..|||||||||+||.+|+.+|++|+|||||+|||+.++.++++.+++|
T Consensus       110 ~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L  184 (235)
T COG1122         110 LPREEIEERVAEALELVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKL  184 (235)
T ss_pred             CCHHHHHHHHHHHHHHcCchhhccCCc-----cccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence            356788899999999999999877654     579999999999999999999999999999999999999999999999


Q ss_pred             Hhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           81 ALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        81 ~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      .++ |.|+|+++|+. ..+...+|++++|++|++++.|+++++.+
T Consensus       185 ~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~i~~  228 (235)
T COG1122         185 KEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAEIFN  228 (235)
T ss_pred             HhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence            986 78999999996 57899999999999999999999876644

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.92  E-value=1e-24  Score=206.60  Aligned_cols=113  Identities=32%  Similarity=0.485  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~   83 (437)
                      +.++.|++.|+.+|+.+.++..+.     .|||||||||.||++|+.+|++|+||||||.||...+.++++.++++++ +
T Consensus       114 ~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~  188 (258)
T COG1120         114 EDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK  188 (258)
T ss_pred             hHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhc
Confidence            334589999999999999998775     6999999999999999999999999999999999999999999999996 6


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |.|+|+++|+++ ...++||++++|++|+++..|+++++.
T Consensus       189 ~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~evl  227 (258)
T COG1120         189 GLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEVL  227 (258)
T ss_pred             CCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchhc
Confidence            999999999986 688999999999999999999998764

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.91  E-value=5.1e-24  Score=197.39  Aligned_cols=119  Identities=19%  Similarity=0.369  Sum_probs=109.3

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++++++++++|+.+||++.   ...+.+++.|||||+|||.+||||+.+|++++||||++.||+.++.++.+.++++.
T Consensus       106 ~k~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq  182 (309)
T COG1125         106 DKERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQ  182 (309)
T ss_pred             CHHHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHH
Confidence            577888999999999999752   23456888999999999999999999999999999999999999999999999999


Q ss_pred             h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      + -|+|||+++|+. .|.+++.||+++|++|+++.+|+|+++..
T Consensus       183 ~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~il~  225 (309)
T COG1125         183 KELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEILA  225 (309)
T ss_pred             HHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence            8 599999999995 68999999999999999999999998864

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.91  E-value=1.1e-23  Score=207.94  Aligned_cols=116  Identities=26%  Similarity=0.445  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      .++..++++++++.++|.+.+++.++     +||||||||++||++|+++|++|+|||||+|||+.++..+.+.|+++++
T Consensus       112 ~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~  186 (306)
T PRK13537        112 AAAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA  186 (306)
T ss_pred             HHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence            34456688999999999988888775     6999999999999999999999999999999999999999999999988


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      +|+|||+++|++. ++.++||++++|++|++++.|++++..+
T Consensus       187 ~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~  227 (306)
T PRK13537        187 RGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALIE  227 (306)
T ss_pred             CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            8999999999974 7899999999999999999999987754

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=8.4e-24  Score=194.38  Aligned_cols=114  Identities=27%  Similarity=0.412  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~   83 (437)
                      +.+++.-+.|+.+|+.+.+.++.+     .|||||+|||+|||+|+.+|++++.|||+++||+.++.++|+.|+++++ +
T Consensus       123 ~dk~~Al~aLervgi~~~A~qra~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~  197 (258)
T COG3638         123 EDKAQALDALERVGILDKAYQRAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQED  197 (258)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHhc-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHc
Confidence            344577789999999999998886     5999999999999999999999999999999999999999999999998 7


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      |.|+|++.||.. -..++|||++-|++|+++|+||++++.+
T Consensus       198 g~Tvi~nLH~vd-lA~~Y~~Riigl~~G~ivfDg~~~el~~  237 (258)
T COG3638         198 GITVIVNLHQVD-LAKKYADRIIGLKAGRIVFDGPASELTD  237 (258)
T ss_pred             CCEEEEEechHH-HHHHHHhhheEecCCcEEEeCChhhhhH
Confidence            999999999974 6789999999999999999999988654

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.90  E-value=2.5e-23  Score=205.21  Aligned_cols=115  Identities=27%  Similarity=0.447  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.+++++++++.+||.+..++.++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus        99 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~  173 (302)
T TIGR01188        99 DEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE  173 (302)
T ss_pred             HHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence            3455678999999999988877664     69999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      |.|||+++|++. ++.++||++++|++|++++.|+++++.+
T Consensus       174 g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~  213 (302)
T TIGR01188       174 GVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKR  213 (302)
T ss_pred             CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence            999999999974 7889999999999999999999987654

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.90  E-value=2.2e-23  Score=208.13  Aligned_cols=115  Identities=30%  Similarity=0.414  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++.++++.++++.+||++..|...     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       114 ~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~  188 (343)
T TIGR02314       114 KDEIKRKVTELLALVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINR  188 (343)
T ss_pred             HHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            4566778999999999998777654     57999999999999999999999999999999999999999999999987


Q ss_pred             c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + |.|||+++|++ ..+.++||++++|++|+++..|+++++.
T Consensus       189 ~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~  229 (343)
T TIGR02314       189 RLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEIF  229 (343)
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            5 99999999996 4688999999999999999999988763

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=3.4e-23  Score=202.89  Aligned_cols=129  Identities=26%  Similarity=0.402  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            3 NDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      +++.+++++++++.+||. +..++.     ++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       117 ~~~~~~~~~~~l~~~~L~~~~~~~~-----~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~  191 (288)
T PRK13643        117 KEKAEKIAAEKLEMVGLADEFWEKS-----PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH  191 (288)
T ss_pred             HHHHHHHHHHHHHHcCCChhhccCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence            455667899999999996 355544     45799999999999999999999999999999999999999999999998


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH---HHHHHcCCCCCCCC
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV---KFFAEAGFPCPSRR  137 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~---~~f~~~g~~~~~~~  137 (437)
                      ++|.|||+++|++. ++.+++|++++|++|++++.|++++..   +.++..|+.+|...
T Consensus       192 ~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~  249 (288)
T PRK13643        192 QSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKAT  249 (288)
T ss_pred             HCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHH
Confidence            88999999999974 688899999999999999999998763   34455677666543

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.90  E-value=1.9e-23  Score=187.29  Aligned_cols=114  Identities=21%  Similarity=0.380  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +++++++++|+++.+.|+++++..     .||||||||+.|||+|+.+|+.++||||++|.||.+..++.++++.|++.|
T Consensus       115 ~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rg  189 (243)
T COG1137         115 ERKEELDALLEEFHITHLRDSKAY-----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRG  189 (243)
T ss_pred             HHHHHHHHHHHHhchHHHhcCccc-----ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCC
Confidence            555678899999999999998765     599999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      ..|++|-|..+ |...++||..++++|+++.+|+++++.+
T Consensus       190 iGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~~  228 (243)
T COG1137         190 IGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIVN  228 (243)
T ss_pred             ceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence            99999999976 7899999999999999999999998753

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.90  E-value=2.7e-23  Score=200.08  Aligned_cols=118  Identities=19%  Similarity=0.284  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      ++|..+++.++|+.+||.+..  .+-+.++..|||||||||.||.+|+.+|++|+.||||++||...+.+++++|+++.+
T Consensus       124 ~~ea~~~a~~~L~~Vgi~~~~--~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~  201 (316)
T COG0444         124 KKEAKERAIELLELVGIPDPE--RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR  201 (316)
T ss_pred             hHHHHHHHHHHHHHcCCCCHH--HHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH
Confidence            456678999999999998643  234568899999999999999999999999999999999999999999999999998


Q ss_pred             -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       .|.++|++||+.. -+.+++|||++|+.|++|..|+.+++.
T Consensus       202 e~~~aiilITHDl~-vva~~aDri~VMYaG~iVE~g~~~~i~  242 (316)
T COG0444         202 EKGTALILITHDLG-VVAEIADRVAVMYAGRIVEEGPVEEIF  242 (316)
T ss_pred             hcCCEEEEEeCCHH-HHHHhcceEEEEECcEEEEeCCHHHHh
Confidence             7999999999974 699999999999999999999998664

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.90  E-value=4.7e-23  Score=195.99  Aligned_cols=113  Identities=26%  Similarity=0.426  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-   82 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-   82 (437)
                      ++..++++++++.+||.+..++.+     +.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ 
T Consensus       111 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  185 (235)
T cd03261         111 EEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE  185 (235)
T ss_pred             HHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh
Confidence            344567899999999987776655     46999999999999999999999999999999999999999999999987 


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      .|+|||+++|++. ++.+++|++++|++|++++.|++++.
T Consensus       186 ~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~  224 (235)
T cd03261         186 LGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEEL  224 (235)
T ss_pred             cCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHHH
Confidence            4899999999975 68889999999999999999988754

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.89  E-value=6.3e-23  Score=205.02  Aligned_cols=115  Identities=25%  Similarity=0.467  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..++++++++.+||.+..+++++     +||||||||++||++|+++|++++|||||+|||+.++.++.+.|++++++
T Consensus       147 ~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~  221 (340)
T PRK13536        147 REIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR  221 (340)
T ss_pred             HHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence            3445678899999999988888775     69999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      |+|||+++|++ .++.++||++++|++|++++.|++++..+
T Consensus       222 g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~  261 (340)
T PRK13536        222 GKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID  261 (340)
T ss_pred             CCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999997 47899999999999999999999998754

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.89  E-value=6.7e-23  Score=206.29  Aligned_cols=116  Identities=23%  Similarity=0.379  Sum_probs=106.2

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.+++++++++.+||++..|+.+     +.|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|++++
T Consensus       110 ~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~  184 (362)
T TIGR03258       110 PKADIAERVADALKLVGLGDAAAHLP-----AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALH  184 (362)
T ss_pred             CHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence            34566778999999999998887765     4699999999999999999999999999999999999999999999998


Q ss_pred             hc--CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 LD--GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~~--g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ++  |.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus       185 ~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~  227 (362)
T TIGR03258       185 EELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALY  227 (362)
T ss_pred             HhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            86  79999999997 4789999999999999999999998774

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.4e-22  Score=198.43  Aligned_cols=115  Identities=23%  Similarity=0.408  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHcCCc--ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            3 NDEINDIVEETIIKMGLQ--ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +++..++++++++.+||.  +..|+.     ++.||||||||++||++|+.+|++|+|||||+|||+.++.++.+.|+++
T Consensus       116 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l  190 (287)
T PRK13637        116 EEEIENRVKRAMNIVGLDYEDYKDKS-----PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKEL  190 (287)
T ss_pred             HHHHHHHHHHHHHHcCCCchhhccCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence            455667899999999996  555554     4579999999999999999999999999999999999999999999999


Q ss_pred             Hhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           81 ALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        81 ~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +++ |+|||+++|++. ++.+++||+++|++|++++.|++++..
T Consensus       191 ~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~  233 (287)
T PRK13637        191 HKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQGTPREVF  233 (287)
T ss_pred             HHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            875 999999999974 678899999999999999999998764

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=7.3e-23  Score=205.81  Aligned_cols=116  Identities=22%  Similarity=0.337  Sum_probs=105.9

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.+++++++++.+||++..+...     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.
T Consensus       107 ~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~  181 (356)
T PRK11650        107 PKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLH  181 (356)
T ss_pred             CHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            34566678999999999998877655     4799999999999999999999999999999999999999999999998


Q ss_pred             hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ++ |.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus       182 ~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~  223 (356)
T PRK11650        182 RRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVY  223 (356)
T ss_pred             HhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence            75 89999999997 4799999999999999999999998763

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.6e-22  Score=198.45  Aligned_cols=115  Identities=22%  Similarity=0.343  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            3 NDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      +++.+++++++++.+||. +..++.+     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       118 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~  192 (290)
T PRK13634        118 EEDAKQKAREMIELVGLPEELLARSP-----FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLH  192 (290)
T ss_pred             HHHHHHHHHHHHHHCCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence            345557899999999996 5556544     5799999999999999999999999999999999999999999999998


Q ss_pred             hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ++ |.|||+++|++. ++.+.+||+++|++|++++.|++++..
T Consensus       193 ~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~  234 (290)
T PRK13634        193 KEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPREIF  234 (290)
T ss_pred             HhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            74 899999999975 688999999999999999999988763

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.89  E-value=1.1e-22  Score=200.89  Aligned_cols=115  Identities=25%  Similarity=0.456  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.+++++++++.++|.+..++.++     .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus       110 ~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~  184 (303)
T TIGR01288       110 REIEAVIPSLLEFARLESKADVRVA-----LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR  184 (303)
T ss_pred             HHHHHHHHHHHHHCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence            3445678889999999988877765     69999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      |.|||+++|++. ++.++||++++|++|++++.|+++++.+
T Consensus       185 g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~  224 (303)
T TIGR01288       185 GKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID  224 (303)
T ss_pred             CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999999975 7889999999999999999999987753

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.9e-22  Score=196.27  Aligned_cols=113  Identities=25%  Similarity=0.390  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.+++++++++.+||.+..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++.++.+.|++++++
T Consensus       113 ~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  187 (274)
T PRK13647        113 DEVERRVEEALKAVRMWDFRDKPP-----YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ  187 (274)
T ss_pred             HHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC
Confidence            345567899999999987777655     469999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |.|||+++|++. .+.+.+|++++|++|++++.|++++.
T Consensus       188 g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  225 (274)
T PRK13647        188 GKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL  225 (274)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence            999999999974 67789999999999999999998654

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.89  E-value=9.9e-23  Score=204.62  Aligned_cols=116  Identities=21%  Similarity=0.340  Sum_probs=106.3

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.+++++++++.+||++..|...     +.|||||||||+||++|+.+|++++||||++|||..++.++.+.|+++.
T Consensus       107 ~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~  181 (353)
T TIGR03265       107 GRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ  181 (353)
T ss_pred             CHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence            34567789999999999998877655     5799999999999999999999999999999999999999999999998


Q ss_pred             hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ++ |.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus       182 ~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~  223 (353)
T TIGR03265       182 RRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIY  223 (353)
T ss_pred             HhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            74 89999999997 4799999999999999999999998774

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.89  E-value=5.6e-23  Score=190.16  Aligned_cols=115  Identities=21%  Similarity=0.375  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~   83 (437)
                      +.++++.++++.+||.+..    -+.++..||||||||++|||||+.+|++|+||||||.||...+.++++.|.++++ .
T Consensus       116 ~~~~~i~~~L~~VgL~~~~----l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~  191 (252)
T COG1124         116 KSQQRIAELLDQVGLPPSF----LDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER  191 (252)
T ss_pred             HHHHHHHHHHHHcCCCHHH----HhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc
Confidence            3445699999999997533    2346678999999999999999999999999999999999999999999999998 5


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      +.|.|+++|+. .-+.++|||+++|++|+++..++.+++.+
T Consensus       192 ~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~  231 (252)
T COG1124         192 GLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPTEELLS  231 (252)
T ss_pred             CceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence            78999999996 57999999999999999999999998754

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.89  E-value=8.8e-23  Score=209.88  Aligned_cols=118  Identities=22%  Similarity=0.339  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      .+|.++++.++|+..||.+....   +.++..|||||||||.||++|+.+|++|++||||++||..++.+|++.||++.+
T Consensus       126 ~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~  202 (539)
T COG1123         126 RAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQR  202 (539)
T ss_pred             HHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHH
Confidence            56788899999999999887655   668999999999999999999999999999999999999999999999999997


Q ss_pred             -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                       .|.++|+++|++. -+.+++|||++|++|+++..|+++++.+
T Consensus       203 e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iVE~G~~~~i~~  244 (539)
T COG1123         203 ELGMAVLFITHDLG-VVAELADRVVVMYKGEIVETGPTEEILS  244 (539)
T ss_pred             HcCcEEEEEcCCHH-HHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence             7999999999985 6899999999999999999999998865

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.89  E-value=1.4e-22  Score=192.83  Aligned_cols=112  Identities=27%  Similarity=0.417  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +..++++++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus       119 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  193 (236)
T cd03219         119 EARERAEELLERVGLADLADRPA-----GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERG  193 (236)
T ss_pred             HHHHHHHHHHHHcCccchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCC
Confidence            44567899999999987776655     4699999999999999999999999999999999999999999999998888


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      +|+|+++|++. ++.+++|++++|++|+++..|++++.
T Consensus       194 ~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  230 (236)
T cd03219         194 ITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDEV  230 (236)
T ss_pred             CEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHHh
Confidence            99999999975 68889999999999999999988765

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.89  E-value=1.5e-24  Score=200.74  Aligned_cols=208  Identities=23%  Similarity=0.358  Sum_probs=184.3

Q ss_pred             HHHHHHHHHHHHHhhhChHHH-HHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHHHHhh-hhhhhHHHHH
Q 013741          225 KQLCILSHRSFLNMLRDMGYY-WLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSV-GGLPSFIEEH  302 (437)
Q Consensus       225 ~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~~~~~-~~~~~~~~er  302 (437)
                      +|++.+++|+++..+|||... ...++..++.++++|.+|.++++++++. ++.+.+++......+... +.......||
T Consensus         1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (210)
T PF01061_consen    1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER   79 (210)
T ss_pred             CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence            599999999999999999888 8999999999999999999988555555 677766666555553333 3336788899


Q ss_pred             HHhhhccCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013741          303 KASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPN  382 (437)
Q Consensus       303 ~v~~rE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~  382 (437)
                      ..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+  +++.+++.+++...+..++|.+++.++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~  157 (210)
T PF01061_consen   80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS  157 (210)
T ss_pred             cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence            9999999999999999999999999999999999999999999999987  67777777788888888999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhhhhcC
Q 013741          383 VLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMEDIF  437 (437)
Q Consensus       383 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~NEf  437 (437)
                      ...+..+.+.+..+++++||.+.|.+.+|++ ++| +.|+||++|++|++..++|
T Consensus       158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~-~~~-i~~~~P~~~~~~~~r~~~f  210 (210)
T PF01061_consen  158 FRDASAISSLILLLLFFLSGVFFPLSSLPSW-LRW-ISYLNPLTYAVEALRAALF  210 (210)
T ss_pred             hhhhhhhhhhcccccccceeeecchHHChHH-HHH-HHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999964 889 9999999999999999987

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=3.5e-22  Score=197.09  Aligned_cols=115  Identities=20%  Similarity=0.381  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            3 NDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      +++..++++++++.+||. +..+..+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       138 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~  212 (305)
T PRK13651        138 KEEAKKRAAKYIELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN  212 (305)
T ss_pred             HHHHHHHHHHHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence            455667899999999996 5666544     5799999999999999999999999999999999999999999999998


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ++|.|||+++|++. .+.+.+||+++|++|++++.|++++..
T Consensus       213 ~~g~tiiivtHd~~-~~~~~adrv~vl~~G~i~~~g~~~~~~  253 (305)
T PRK13651        213 KQGKTIILVTHDLD-NVLEWTKRTIFFKDGKIIKDGDTYDIL  253 (305)
T ss_pred             HCCCEEEEEeeCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            88999999999964 688999999999999999999998764

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.89  E-value=1.2e-22  Score=188.94  Aligned_cols=102  Identities=26%  Similarity=0.467  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-   83 (437)
                      +++++++++++.+||++..+.    .++..|||||||||+|||+|+.+|++++.||||..||+.++..+++.+++++++ 
T Consensus       117 ~~~~~~~~l~~~lgl~~~~~~----~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~  192 (226)
T COG1136         117 RRKRAAEELLEVLGLEDRLLK----KKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER  192 (226)
T ss_pred             HHHHHHHHHHHhcCChhhhcc----CCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhc
Confidence            567789999999999976652    245679999999999999999999999999999999999999999999999874 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~  112 (437)
                      |+|+|++||+|  ++...+||++.|.+|+
T Consensus       193 g~tii~VTHd~--~lA~~~dr~i~l~dG~  219 (226)
T COG1136         193 GKTIIMVTHDP--ELAKYADRVIELKDGK  219 (226)
T ss_pred             CCEEEEEcCCH--HHHHhCCEEEEEeCCe
Confidence            99999999997  5788999999999998

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=2.8e-22  Score=196.04  Aligned_cols=116  Identities=25%  Similarity=0.469  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      .++..++++++++.+||.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       115 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~  189 (283)
T PRK13636        115 EDEVRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK  189 (283)
T ss_pred             HHHHHHHHHHHHHHCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence            3455678999999999988776655     46999999999999999999999999999999999999999999999987


Q ss_pred             c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      + |+|||+++|++. ++.+.+|++++|++|++++.|++++..+
T Consensus       190 ~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~  231 (283)
T PRK13636        190 ELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA  231 (283)
T ss_pred             hCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            5 899999999975 5778999999999999999999887643

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=1.8e-22  Score=202.51  Aligned_cols=116  Identities=21%  Similarity=0.378  Sum_probs=105.7

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.+++++++++.+||.+..|...     +.|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++.
T Consensus       109 ~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  183 (351)
T PRK11432        109 PKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQ  183 (351)
T ss_pred             CHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence            35567789999999999988776554     5799999999999999999999999999999999999999999999998


Q ss_pred             hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ++ |.|+|+++|++ .++.+++|++++|++|+++..|+++++.
T Consensus       184 ~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~  225 (351)
T PRK11432        184 QQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELY  225 (351)
T ss_pred             HhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            74 89999999997 4789999999999999999999998763

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.89  E-value=2.1e-22  Score=191.06  Aligned_cols=112  Identities=23%  Similarity=0.377  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +..++++++++.+||.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       109 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~  183 (232)
T cd03218         109 EREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG  183 (232)
T ss_pred             HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence            44567889999999988777655     4699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      +|+|+++|++. ++.+++|++++|++|+++..|+.++.
T Consensus       184 ~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  220 (232)
T cd03218         184 IGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEI  220 (232)
T ss_pred             CEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHh
Confidence            99999999975 78999999999999999999988765

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.88  E-value=2e-22  Score=202.37  Aligned_cols=115  Identities=21%  Similarity=0.284  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++.+++++++++.++|.+..|.++     +.|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++
T Consensus       110 ~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~  184 (353)
T PRK10851        110 AAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE  184 (353)
T ss_pred             HHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence            3456678999999999988777655     57999999999999999999999999999999999999999999999987


Q ss_pred             c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + |.|+|+++|++ .++..++|++++|++|++++.|+++++.
T Consensus       185 ~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~  225 (353)
T PRK10851        185 ELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW  225 (353)
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            5 89999999997 4789999999999999999999998764

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.88  E-value=2.2e-22  Score=191.93  Aligned_cols=111  Identities=27%  Similarity=0.405  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DG   84 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g   84 (437)
                      ..++++++++.+||.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|
T Consensus       121 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~  195 (241)
T cd03256         121 EKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG  195 (241)
T ss_pred             HHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC
Confidence            3467889999999987666654     57999999999999999999999999999999999999999999999987 48


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      +|||+++|++. ++.+++|++++|++|++++.|++++.
T Consensus       196 ~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~  232 (241)
T cd03256         196 ITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAEL  232 (241)
T ss_pred             CEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHHh
Confidence            99999999975 68889999999999999999998765

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.88  E-value=1.7e-22  Score=189.21  Aligned_cols=107  Identities=25%  Similarity=0.387  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~   83 (437)
                      +.+++++++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .
T Consensus       106 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~  180 (213)
T cd03259         106 EIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQREL  180 (213)
T ss_pred             HHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence            44567889999999988777665     46999999999999999999999999999999999999999999999987 4


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG  117 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G  117 (437)
                      |+|||+++|++. ++.+++|++++|++|+++..|
T Consensus       181 ~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         181 GITTIYVTHDQE-EALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             CCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence            899999999974 688899999999999998765

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=4e-22  Score=197.85  Aligned_cols=126  Identities=24%  Similarity=0.434  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            3 NDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      +++..++++++++.+||. +..++.     +..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       149 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~  223 (320)
T PRK13631        149 KSEAKKLAKFYLNKMGLDDSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAK  223 (320)
T ss_pred             HHHHHHHHHHHHHHcCCChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence            344556889999999996 455543     45799999999999999999999999999999999999999999999998


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH---HHHHHcCCCCC
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV---KFFAEAGFPCP  134 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~---~~f~~~g~~~~  134 (437)
                      ++|+|||+++|++. ++.+.+|++++|++|+++..|++++..   +.++..|...|
T Consensus       224 ~~g~TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p  278 (320)
T PRK13631        224 ANNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP  278 (320)
T ss_pred             HCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence            88999999999974 678899999999999999999988653   23344455543

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.88  E-value=2.1e-22  Score=189.67  Aligned_cols=112  Identities=26%  Similarity=0.409  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.+++++++++.+||.+..++.++     .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus       106 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  180 (220)
T cd03265         106 AERRERIDELLDFVGLLEAADRLVK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE  180 (220)
T ss_pred             HHHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh
Confidence            3445678999999999887777654     69999999999999999999999999999999999999999999999886


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhH
Q 013741           84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM  121 (437)
Q Consensus        84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~  121 (437)
                       |.|+|+++|++. ++.+.+|++++|.+|+++..|++++
T Consensus       181 ~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~  218 (220)
T cd03265         181 FGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEE  218 (220)
T ss_pred             cCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHH
Confidence             899999999975 6888999999999999999988765

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=3.9e-22  Score=193.83  Aligned_cols=114  Identities=30%  Similarity=0.457  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..++++++++.+||.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       111 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~  185 (271)
T PRK13638        111 AEITRRVDEALTLVDAQHFRHQPI-----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ  185 (271)
T ss_pred             HHHHHHHHHHHHHcCCHhHhcCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence            344567889999999988777655     469999999999999999999999999999999999999999999999878


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |.|||+++|++. ++.+++|++++|++|+++..|++++..
T Consensus       186 g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  224 (271)
T PRK13638        186 GNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPGEVF  224 (271)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            899999999975 678899999999999999999987653

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=2.3e-22  Score=201.57  Aligned_cols=115  Identities=28%  Similarity=0.390  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++.+++++++++.+||.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       114 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~  188 (343)
T PRK11153        114 KAEIKARVTELLELVGLSDKADRYP-----AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR  188 (343)
T ss_pred             HHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            3455678899999999988777655     46999999999999999999999999999999999999999999999987


Q ss_pred             c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + |+|+|+++|++. ++.++||++++|++|++++.|+++++.
T Consensus       189 ~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~~~  229 (343)
T PRK11153        189 ELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSEVF  229 (343)
T ss_pred             hcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            4 899999999975 688899999999999999999988663

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=4.3e-22  Score=194.28  Aligned_cols=114  Identities=26%  Similarity=0.410  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++..++++++++.+||++..+..+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       114 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~  188 (279)
T PRK13650        114 HEEMKERVNEALELVGMQDFKEREP-----ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD  188 (279)
T ss_pred             HHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence            4455678999999999988777655     46999999999999999999999999999999999999999999999987


Q ss_pred             c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + |+|||+++|++. ++ ..+|++++|++|+++..|++++..
T Consensus       189 ~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~  228 (279)
T PRK13650        189 DYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELF  228 (279)
T ss_pred             hcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence            5 999999999975 45 579999999999999999988654

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=3e-22  Score=196.12  Aligned_cols=115  Identities=26%  Similarity=0.370  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            3 NDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      +++..++++++++.+||+ +..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       118 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~  192 (287)
T PRK13641        118 EDEAKEKALKWLKKVGLSEDLISKSP-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQ  192 (287)
T ss_pred             HHHHHHHHHHHHHHcCCChhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence            345566889999999997 5666655     4699999999999999999999999999999999999999999999998


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ++|.|||+++|++. ++.+.+|++++|++|+++..|++++..
T Consensus       193 ~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~  233 (287)
T PRK13641        193 KAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKHASPKEIF  233 (287)
T ss_pred             hCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            78999999999974 688999999999999999999988654

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.88  E-value=1.7e-22  Score=178.63  Aligned_cols=114  Identities=22%  Similarity=0.348  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-   82 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-   82 (437)
                      ++.+++|+.++...||..+.+..-     ..|||||||||++||.|+++-.|++||||+|.||+.-+.++...+.++++ 
T Consensus       104 a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E  178 (231)
T COG3840         104 AEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE  178 (231)
T ss_pred             HHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh
Confidence            455679999999999998877654     47999999999999999999999999999999999999999999999998 


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ++.|+++++|||+ ++.++.|+++++++||+.+.|+.++..
T Consensus       179 ~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~  218 (231)
T COG3840         179 RKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL  218 (231)
T ss_pred             hCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence            6899999999996 789999999999999999999988653

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.88  E-value=2.6e-22  Score=191.41  Aligned_cols=112  Identities=22%  Similarity=0.314  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-   83 (437)
                      +..++++++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ 
T Consensus       112 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~  186 (239)
T cd03296         112 EIRAKVHELLKLVQLDWLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL  186 (239)
T ss_pred             HHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence            34467889999999987777655     469999999999999999999999999999999999999999999999874 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |+|||+++|++. ++.+.+|++++|++|++++.|++++.
T Consensus       187 ~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  224 (239)
T cd03296         187 HVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEV  224 (239)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence            899999999974 67889999999999999999988765

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.88  E-value=2e-22  Score=204.87  Aligned_cols=112  Identities=26%  Similarity=0.419  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +.+++++++++.+||.+..++.+     +.||||||||+.||++|+++|++|+|||||+|||+.++.++++.|++++++|
T Consensus       115 ~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g  189 (402)
T PRK09536        115 TDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDG  189 (402)
T ss_pred             HHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC
Confidence            34568999999999998887765     4699999999999999999999999999999999999999999999999888


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      .|||+++|++. ++.+++||+++|++|++++.|+++++
T Consensus       190 ~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev  226 (402)
T PRK09536        190 KTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADV  226 (402)
T ss_pred             CEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence            99999999974 78899999999999999999999874

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.88  E-value=3.3e-22  Score=191.93  Aligned_cols=112  Identities=28%  Similarity=0.400  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +..++++++++.+||.+..|+.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       120 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~  194 (250)
T PRK11264        120 EATARARELLAKVGLAGKETSYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEK  194 (250)
T ss_pred             HHHHHHHHHHHHcCCcchhhCCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcC
Confidence            34567889999999987766654     4699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      .|+|+++|++. ++.+++|++++|++|++++.|+.++.
T Consensus       195 ~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  231 (250)
T PRK11264        195 RTMVIVTHEMS-FARDVADRAIFMDQGRIVEQGPAKAL  231 (250)
T ss_pred             CEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            99999999975 68889999999999999999998765

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.88  E-value=2e-22  Score=186.59  Aligned_cols=116  Identities=28%  Similarity=0.420  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      .++..++..++|+.+||.+.+|+..|+     ||+|||||+.||++|+++|++|+||||.+||.+..+.++.+.|+++++
T Consensus       123 e~~~~e~A~~~Le~vgL~~~a~~~A~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~  197 (250)
T COG0411         123 EREARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD  197 (250)
T ss_pred             HHHHHHHHHHHHHHcCCchhhcchhhc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh
Confidence            345667899999999999999999985     999999999999999999999999999999999999999999999998


Q ss_pred             -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                       .|.||+++-|+. .-++++||||++|+.|+++..|+++++.+
T Consensus       198 ~~g~tillIEHdM-~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~  239 (250)
T COG0411         198 RGGVTILLIEHDM-KLVMGLADRIVVLNYGEVIAEGTPEEVRN  239 (250)
T ss_pred             cCCcEEEEEEecc-HHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence             579999999996 57999999999999999999999998753

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.88  E-value=3.3e-22  Score=194.12  Aligned_cols=113  Identities=19%  Similarity=0.290  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~   83 (437)
                      +..++++++++.+||.+..++.++     .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .
T Consensus       136 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~  210 (269)
T cd03294         136 EREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL  210 (269)
T ss_pred             HHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc
Confidence            445678899999999887777664     6999999999999999999999999999999999999999999999986 4


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |+|+|+++|++. ++.+++|++++|++|+++..|++++..
T Consensus       211 g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~  249 (269)
T cd03294         211 QKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL  249 (269)
T ss_pred             CCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence            899999999975 688999999999999999999887653

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.88  E-value=2.6e-22  Score=189.88  Aligned_cols=111  Identities=28%  Similarity=0.433  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      .+++++++++.+||.+..+....   ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ +
T Consensus       116 ~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~  191 (227)
T cd03260         116 LDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-Y  191 (227)
T ss_pred             HHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-c
Confidence            45678899999999877665431   3579999999999999999999999999999999999999999999999887 9


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM  121 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~  121 (437)
                      |||+++|++. ++.+++|++++|++|++++.|++++
T Consensus       192 tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~  226 (227)
T cd03260         192 TIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ  226 (227)
T ss_pred             EEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence            9999999975 6888999999999999999998764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.88  E-value=3.6e-22  Score=199.04  Aligned_cols=118  Identities=19%  Similarity=0.345  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++..+++.++++.+||.+..+. + +.+++.|||||||||+||++|+.+|++|++||||+|||..++.++++.|+++++
T Consensus       132 ~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~  209 (330)
T PRK09473        132 KAEAFEESVRMLDAVKMPEARKR-M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKR  209 (330)
T ss_pred             HHHHHHHHHHHHHHcCCCChHHH-h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence            34556788999999999753322 2 356788999999999999999999999999999999999999999999999987


Q ss_pred             c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + |.|+|+++|++. .+.+++|++++|++|+++..|+++++.
T Consensus       210 ~~g~til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~i~  250 (330)
T PRK09473        210 EFNTAIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNARDVF  250 (330)
T ss_pred             HcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            4 899999999975 677899999999999999999998774

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.88  E-value=3.6e-22  Score=190.54  Aligned_cols=114  Identities=25%  Similarity=0.414  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..++++++++.+||++..|..+     +.||||||||++||++++.+|++++|||||+|||..++..+.+.|++++++
T Consensus       111 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~  185 (240)
T PRK09493        111 EEAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE  185 (240)
T ss_pred             HHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc
Confidence            344567899999999987776655     469999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |+|+|+++|++. ++.+++|++++|++|++++.|+.++..
T Consensus       186 ~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  224 (240)
T PRK09493        186 GMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVLI  224 (240)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence            999999999975 678889999999999999999987653

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.88  E-value=3e-22  Score=202.52  Aligned_cols=115  Identities=25%  Similarity=0.408  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++.+++++++++.+||++..+..+     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       107 ~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~  181 (369)
T PRK11000        107 KEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK  181 (369)
T ss_pred             HHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            3455678999999999988777655     46999999999999999999999999999999999999999999999987


Q ss_pred             c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + |.|+|+++|++. ++.+++|++++|++|+++..|+++++.
T Consensus       182 ~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~  222 (369)
T PRK11000        182 RLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY  222 (369)
T ss_pred             HhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            4 899999999974 788999999999999999999998764

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.88  E-value=2.9e-22  Score=191.43  Aligned_cols=112  Identities=27%  Similarity=0.391  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~   83 (437)
                      +.+++++++++.+||.+..+..+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .
T Consensus       121 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  195 (243)
T TIGR02315       121 EDKERALSALERVGLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKED  195 (243)
T ss_pred             HHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc
Confidence            34567889999999987766654     46999999999999999999999999999999999999999999999976 4


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |+|+|+++|++. ++.+++|++++|++|+++..|++++.
T Consensus       196 ~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (243)
T TIGR02315       196 GITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSEL  233 (243)
T ss_pred             CCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHHh
Confidence            899999999975 67889999999999999999988754

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.88  E-value=3.2e-22  Score=197.29  Aligned_cols=114  Identities=26%  Similarity=0.434  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..++++++++.+||.+..|+.++     .||||||||++||++|+++|++|+|||||+|||+.++..+.+.|+++++ 
T Consensus       108 ~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-  181 (301)
T TIGR03522       108 QLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-  181 (301)
T ss_pred             HHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-
Confidence            4456688999999999988877664     6999999999999999999999999999999999999999999999975 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      ++|||+++|++. ++.++||++++|++|++++.|+.++..+
T Consensus       182 ~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~  221 (301)
T TIGR03522       182 DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA  221 (301)
T ss_pred             CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence            799999999974 7999999999999999999999998754

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.88  E-value=4e-22  Score=198.65  Aligned_cols=116  Identities=22%  Similarity=0.379  Sum_probs=102.7

Q ss_pred             CHHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      ++++.+++++++++.+||. +..++     ++..|||||||||+||++|+.+|++|++||||+|||..++.++++.|+++
T Consensus       133 ~~~~~~~~~~~~l~~vgl~~~~~~~-----~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l  207 (331)
T PRK15079        133 SRQEVKDRVKAMMLKVGLLPNLINR-----YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL  207 (331)
T ss_pred             CHHHHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            3456677889999999994 33443     55689999999999999999999999999999999999999999999999


Q ss_pred             Hhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           81 ALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        81 ~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      .++ |.|+|+++|++. .+.+++|++++|++|+++..|+.+++.
T Consensus       208 ~~~~~~til~iTHdl~-~~~~~~dri~vl~~G~ive~g~~~~i~  250 (331)
T PRK15079        208 QREMGLSLIFIAHDLA-VVKHISDRVLVMYLGHAVELGTYDEVY  250 (331)
T ss_pred             HHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            874 899999999974 688899999999999999999988764

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.88  E-value=4.5e-22  Score=199.93  Aligned_cols=115  Identities=20%  Similarity=0.298  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++..+++.++++.+||++..++..     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.++++.+
T Consensus       103 ~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~  177 (363)
T TIGR01186       103 EQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA  177 (363)
T ss_pred             HHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            4566788999999999987776655     46999999999999999999999999999999999999999999999986


Q ss_pred             -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       .|+|||+++|++ .++.+++|++++|++|+++..|++++..
T Consensus       178 ~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~  218 (363)
T TIGR01186       178 TLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL  218 (363)
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence             489999999996 4688999999999999999999988764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.88  E-value=2.7e-22  Score=190.28  Aligned_cols=110  Identities=31%  Similarity=0.412  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-   83 (437)
                      +.+++++++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ 
T Consensus        90 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~  164 (230)
T TIGR01184        90 ERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH  164 (230)
T ss_pred             HHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence            44557889999999988777655     469999999999999999999999999999999999999999999999874 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChh
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK  120 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~  120 (437)
                      |+|||+++|++. ++.+.+|++++|++|+++..|+..
T Consensus       165 ~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~  200 (230)
T TIGR01184       165 RVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQIL  200 (230)
T ss_pred             CCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCce
Confidence            899999999975 688999999999999999888654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.88  E-value=3.5e-22  Score=187.05  Aligned_cols=108  Identities=24%  Similarity=0.408  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-   82 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-   82 (437)
                      ++.+++++++++.+||.+..++.++     .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ 
T Consensus       105 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  179 (213)
T cd03301         105 DEIDERVREVAELLQIEHLLDRKPK-----QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR  179 (213)
T ss_pred             HHHHHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence            3445678899999999887777654     6999999999999999999999999999999999999999999999987 


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG  117 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G  117 (437)
                      .|.|||+++|++. ++.+++|++++|++|++++.|
T Consensus       180 ~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         180 LGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             cCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence            4899999999974 688899999999999999876

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=8.7e-22  Score=191.75  Aligned_cols=114  Identities=27%  Similarity=0.451  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..+++.++++.+||.+..++.++     .||||||||+.||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus       112 ~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~  186 (275)
T PRK13639        112 EEVEKRVKEALKAVGMEGFENKPPH-----HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE  186 (275)
T ss_pred             HHHHHHHHHHHHHCCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence            3455678999999999887777654     69999999999999999999999999999999999999999999999878


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |.|||+++|++. ++.+++|++++|++|+++..|++++..
T Consensus       187 ~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  225 (275)
T PRK13639        187 GITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPKEVF  225 (275)
T ss_pred             CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999974 678899999999999999999988764

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.88  E-value=5e-22  Score=197.79  Aligned_cols=114  Identities=25%  Similarity=0.365  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.+++++++++.+||.+..++.+     +.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus        75 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~  149 (325)
T TIGR01187        75 AEIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ  149 (325)
T ss_pred             HHHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence            445668899999999988777655     569999999999999999999999999999999999999999999999874


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       |.|+|+++|++. ++.+++|++++|++|+++..|+++++.
T Consensus       150 ~g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~  189 (325)
T TIGR01187       150 LGITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY  189 (325)
T ss_pred             cCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence             899999999974 789999999999999999999998764

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.88  E-value=4.5e-22  Score=201.05  Aligned_cols=115  Identities=25%  Similarity=0.337  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++.+++++++++.+||++..|...     +.|||||||||+||++|+.+|++|+|||||+|||...+..+.+.|+++++
T Consensus       118 ~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~  192 (375)
T PRK09452        118 AAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQR  192 (375)
T ss_pred             HHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence            4556678999999999998877655     57999999999999999999999999999999999999999999999987


Q ss_pred             -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       .|.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus       193 ~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~  233 (375)
T PRK09452        193 KLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY  233 (375)
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence             489999999997 4789999999999999999999998764

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=5.3e-22  Score=193.44  Aligned_cols=114  Identities=28%  Similarity=0.434  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.+++++++++.+||.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       112 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~  186 (277)
T PRK13652        112 ETVAHRVSSALHMLGLEELRDRVP-----HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET  186 (277)
T ss_pred             HHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            344567899999999988777665     469999999999999999999999999999999999999999999999875


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       |.|||+++|++. ++.+.+|++++|++|++++.|++++..
T Consensus       187 ~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~~~  226 (277)
T PRK13652        187 YGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEEIF  226 (277)
T ss_pred             cCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHHHh
Confidence             899999999975 688899999999999999999998764

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=6e-22  Score=193.92  Aligned_cols=115  Identities=20%  Similarity=0.408  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            3 NDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      +++..++++++++.+||. +..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus       118 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~  192 (286)
T PRK13646        118 LDEVKNYAHRLLMDLGFSRDVMSQSP-----FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQ  192 (286)
T ss_pred             HHHHHHHHHHHHHHcCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence            445667899999999996 5666544     5799999999999999999999999999999999999999999999998


Q ss_pred             h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + .|.|||+++|++. ++.+++|++++|++|++++.|++++..
T Consensus       193 ~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~  234 (286)
T PRK13646        193 TDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELF  234 (286)
T ss_pred             HhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            6 5899999999975 688899999999999999999988653

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.88  E-value=5.3e-22  Score=188.49  Aligned_cols=112  Identities=28%  Similarity=0.403  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-   83 (437)
                      +..+.++++++.+||.+..+..+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ 
T Consensus       116 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~  190 (233)
T cd03258         116 EIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL  190 (233)
T ss_pred             HHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHc
Confidence            34567889999999987777655     469999999999999999999999999999999999999999999999875 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |+|||+++|++. ++.+++|++++|++|+++..|+.++.
T Consensus       191 ~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (233)
T cd03258         191 GLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVEEV  228 (233)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence            899999999974 68889999999999999999987765

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.88  E-value=3e-22  Score=190.32  Aligned_cols=116  Identities=25%  Similarity=0.344  Sum_probs=107.5

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++.+++.+|+++|+.+.|++.++     .++..|||||||||++||+|+.+|++|+||||+++||..-+.++-+.|+++.
T Consensus       110 ~~~~~r~rv~elL~lvqL~~la~-----ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~  184 (345)
T COG1118         110 SEAEIRARVEELLRLVQLEGLAD-----RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLH  184 (345)
T ss_pred             ChhhHHHHHHHHHHHhcccchhh-----cCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHH
Confidence            45678889999999999987665     4678899999999999999999999999999999999999999999999999


Q ss_pred             hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ++ |.|++.++|++ .++++++|||++|++|++...|+++++.
T Consensus       185 ~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev~  226 (345)
T COG1118         185 DRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVY  226 (345)
T ss_pred             HhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence            84 99999999997 5899999999999999999999999874

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=5.7e-22  Score=197.31  Aligned_cols=115  Identities=21%  Similarity=0.298  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            3 NDEINDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      +++.++++.++++.+||.+ ..++     +++.||||||||++||++|+.+|++|++||||+|||..++.++++.|++++
T Consensus       127 ~~~~~~~~~~~l~~~gL~~~~~~~-----~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~  201 (327)
T PRK11308        127 AAERREKALAMMAKVGLRPEHYDR-----YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQ  201 (327)
T ss_pred             HHHHHHHHHHHHHHCCCChHHhcC-----CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence            4456678999999999963 4444     456899999999999999999999999999999999999999999999998


Q ss_pred             h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + .|.|+|+++|+.. .+.+++|++++|++|+++..|+.+++.
T Consensus       202 ~~~g~til~iTHdl~-~~~~~adrv~vm~~G~ive~g~~~~~~  243 (327)
T PRK11308        202 QELGLSYVFISHDLS-VVEHIADEVMVMYLGRCVEKGTKEQIF  243 (327)
T ss_pred             HHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            7 4999999999964 677899999999999999999988764

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=5.4e-22  Score=197.97  Aligned_cols=116  Identities=19%  Similarity=0.276  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~   83 (437)
                      +.++++.++++.+||.+..+  .-+.++..|||||||||+||++|+.+|++|++||||+|||+.++.++.+.|+++++ .
T Consensus       131 ~~~~~~~~~L~~~gL~~~~~--~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~  208 (330)
T PRK15093        131 WRKRRAIELLHRVGIKDHKD--AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN  208 (330)
T ss_pred             HHHHHHHHHHHHCCCCChHH--HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence            34568899999999975322  12345678999999999999999999999999999999999999999999999988 4


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |.|+|+++|++ ..+.+++|++++|++|+++..|+.+++.
T Consensus       209 g~tii~itHdl-~~v~~~~dri~vm~~G~ive~g~~~~i~  247 (330)
T PRK15093        209 NTTILLISHDL-QMLSQWADKINVLYCGQTVETAPSKELV  247 (330)
T ss_pred             CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            89999999996 4688999999999999999999988663

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=6.1e-22  Score=197.14  Aligned_cols=118  Identities=19%  Similarity=0.268  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++.+++++++++.+||.+..+.  -+.++..|||||||||+||++|+.+|++|++||||+|||..++.++++.|+++++
T Consensus       124 ~~~~~~~~~~~L~~~gL~~~~~~--l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~  201 (326)
T PRK11022        124 KKTRRQRAIDLLNQVGIPDPASR--LDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQ  201 (326)
T ss_pred             HHHHHHHHHHHHHHCCCCChHHH--HhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence            34566789999999999753211  1245678999999999999999999999999999999999999999999999987


Q ss_pred             -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       .|.|+|+++|+.. .+.+++|++++|++|+++..|+++++.
T Consensus       202 ~~g~til~iTHdl~-~~~~~adri~vm~~G~ive~g~~~~~~  242 (326)
T PRK11022        202 KENMALVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAHDIF  242 (326)
T ss_pred             hcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence             5899999999975 678899999999999999999998764

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.88  E-value=4.4e-22  Score=187.07  Aligned_cols=108  Identities=29%  Similarity=0.552  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..++++++++.+||.+..+..++     .||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       111 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~  185 (218)
T cd03266         111 DELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL  185 (218)
T ss_pred             HHHHHHHHHHHHHcCCHHHHhhhhh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHC
Confidence            3456788999999999887777654     69999999999999999999999999999999999999999999999878


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG  117 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G  117 (437)
                      |+|+|+++|++. ++.+.+|++++|++|+++..|
T Consensus       186 ~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         186 GKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             CCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence            999999999974 688899999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.88  E-value=5.8e-22  Score=186.60  Aligned_cols=110  Identities=26%  Similarity=0.368  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~   83 (437)
                      +..++++++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .
T Consensus       107 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~  181 (220)
T cd03293         107 EARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRET  181 (220)
T ss_pred             HHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            44567899999999988777655     46999999999999999999999999999999999999999999999976 5


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEe--CCeEEEeeChh
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLS--NGETIYFGDAK  120 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~--~G~~v~~G~~~  120 (437)
                      |+|||+++|++. ++.+.+|++++|+  +|+++..++.+
T Consensus       182 ~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~  219 (220)
T cd03293         182 GKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD  219 (220)
T ss_pred             CCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence            899999999975 6788999999999  79999888753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.88  E-value=4.4e-22  Score=186.84  Aligned_cols=104  Identities=27%  Similarity=0.390  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.+++++++++.+||.+..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       113 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  187 (216)
T TIGR00960       113 RDANERVSAALEKVGLEGKAHALP-----MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR  187 (216)
T ss_pred             HHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC
Confidence            345568899999999988777655     469999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGET  113 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~  113 (437)
                      |.|||+++|++. ++.+++|++++|++|++
T Consensus       188 ~~tii~vsH~~~-~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       188 GTTVLVATHDIN-LVETYRHRTLTLSRGRL  216 (216)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence            999999999975 67889999999999974

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=6.8e-22  Score=192.41  Aligned_cols=114  Identities=22%  Similarity=0.371  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++..++++++++.+||++..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus       110 ~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~  184 (274)
T PRK13644        110 PIEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE  184 (274)
T ss_pred             HHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence            3445678899999999988777655     46999999999999999999999999999999999999999999999988


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +|.|||+++|++. ++ ..+|++++|++|++++.|++++..
T Consensus       185 ~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~  223 (274)
T PRK13644        185 KGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL  223 (274)
T ss_pred             CCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence            8999999999986 45 569999999999999999988753

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.87  E-value=6.9e-22  Score=188.76  Aligned_cols=113  Identities=26%  Similarity=0.369  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            6 INDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      ..++++++++.+||. +..++.++    ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus       119 ~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  194 (243)
T TIGR01978       119 FLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPD  194 (243)
T ss_pred             HHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence            346788999999997 45555442    2499999999999999999999999999999999999999999999998888


Q ss_pred             CEEEEEecCCchHHHhh-cCeEEEEeCCeEEEeeChhHHH
Q 013741           85 RIVVCSIHQPSSHLFYL-FDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~-fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      .|||+++|++. .+... +|++++|++|++++.|++++..
T Consensus       195 ~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (243)
T TIGR01978       195 RSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKSGDVELAK  233 (243)
T ss_pred             cEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence            99999999975 57777 7999999999999999987554

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.3e-21  Score=190.97  Aligned_cols=114  Identities=24%  Similarity=0.375  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            4 DEINDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      ++..++++++++.+||.+ ..+..+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       119 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~  193 (280)
T PRK13649        119 EEAEALAREKLALVGISESLFEKNP-----FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ  193 (280)
T ss_pred             HHHHHHHHHHHHHcCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            344567889999999973 455544     56999999999999999999999999999999999999999999999987


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +|+|||+++|++. ++.+++|++++|++|+++..|++++..
T Consensus       194 ~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (280)
T PRK13649        194 SGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLSGKPKDIF  233 (280)
T ss_pred             CCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            8899999999974 688899999999999999999988763

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.87  E-value=6.9e-22  Score=191.85  Aligned_cols=111  Identities=18%  Similarity=0.343  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-C
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-G   84 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g   84 (437)
                      .+++++++++.+||.+..+..+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |
T Consensus       120 ~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g  194 (269)
T PRK11831        120 LHSTVMMKLEAVGLRGAAKLMP-----SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALG  194 (269)
T ss_pred             HHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence            3457888999999988777765     469999999999999999999999999999999999999999999999874 8


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      +|||+++|++. ++.+++|++++|++|++++.|++++.
T Consensus       195 ~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~  231 (269)
T PRK11831        195 VTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGSAQAL  231 (269)
T ss_pred             cEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCCHHHH
Confidence            99999999974 68889999999999999999998765

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=2.1e-22  Score=182.37  Aligned_cols=129  Identities=26%  Similarity=0.394  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.+++|++.|+.-.|++--..+.. ....+|||||+||++|||+|+.+|+||+||||||.|||.+..+|-+++.+|++ 
T Consensus       120 ~~ldeiVe~sLk~AaLWdEVKDrL~-~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-  197 (253)
T COG1117         120 KELDEIVESSLKKAALWDEVKDRLH-KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-  197 (253)
T ss_pred             HHHHHHHHHHHHHhHhHHHhHHHhh-CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-
Confidence            5677899999999998754333332 24457999999999999999999999999999999999999999999999984 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHHHcCCCCCCCCCchHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHF  143 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~~~g~~~~~~~~~~d~~  143 (437)
                      ..|||+++|.+ ....+..|+..++..|+++.+|+.+++.        ..|.+.-..||+
T Consensus       198 ~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T~~iF--------~~P~~~~TedYi  248 (253)
T COG1117         198 KYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPTDKIF--------TNPKHKRTEDYI  248 (253)
T ss_pred             ccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCHHhhh--------cCccHHHHHHHh
Confidence            58999999996 4789999999999999999999998662        345555555553

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=9.3e-22  Score=192.03  Aligned_cols=114  Identities=23%  Similarity=0.373  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++.+++++++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus       118 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~  192 (280)
T PRK13633        118 PEEIRERVDESLKKVGMYEYRRHAP-----HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNK  192 (280)
T ss_pred             HHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            3455678899999999998877766     46999999999999999999999999999999999999999999999987


Q ss_pred             -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       .|.|||+++|++. ++.. +|++++|++|+++..|++++..
T Consensus       193 ~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~~~  232 (280)
T PRK13633        193 KYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKEIF  232 (280)
T ss_pred             hcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence             4999999999986 4555 9999999999999999988764

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=4.3e-22  Score=185.74  Aligned_cols=104  Identities=26%  Similarity=0.373  Sum_probs=95.3

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      +++|.++++++.|+.+||.+..|.     +++.|||||||||+|||+|+.+|++|+||||++.||+.++.++.+.|.++.
T Consensus       103 ~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw  177 (248)
T COG1116         103 SKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLW  177 (248)
T ss_pred             chHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHH
Confidence            467778899999999999987764     678899999999999999999999999999999999999999999999887


Q ss_pred             h-cCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741           82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNG  111 (437)
Q Consensus        82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G  111 (437)
                      + .++||+++||+.. |...+.|||++|+++
T Consensus       178 ~~~~~TvllVTHdi~-EAv~LsdRivvl~~~  207 (248)
T COG1116         178 EETRKTVLLVTHDVD-EAVYLADRVVVLSNR  207 (248)
T ss_pred             HhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence            6 6899999999974 788899999999984

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=7.2e-22  Score=199.85  Aligned_cols=115  Identities=22%  Similarity=0.316  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++.+++++++++.+||.+..+...     ++|||||||||+||++|+.+|++|+|||||+|||...+.++.+.|+++.+
T Consensus       123 ~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~  197 (377)
T PRK11607        123 KAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE  197 (377)
T ss_pred             HHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            4566778999999999988776654     57999999999999999999999999999999999999999999999876


Q ss_pred             -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       .|.|+|+++|++. ++..++|++++|++|+++..|+++++.
T Consensus       198 ~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~  238 (377)
T PRK11607        198 RVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIY  238 (377)
T ss_pred             hcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence             5899999999974 789999999999999999999998764

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=6.8e-22  Score=190.27  Aligned_cols=110  Identities=21%  Similarity=0.343  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CC
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~   85 (437)
                      .+++++.++.+||.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.
T Consensus       131 ~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~  205 (255)
T PRK11300        131 LDRAATWLERVGLLEHANRQA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNV  205 (255)
T ss_pred             HHHHHHHHHhCChhhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCC
Confidence            357888999999987777665     469999999999999999999999999999999999999999999999875 89


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |||+++|++. ++.+.+|++++|++|++++.|++++.
T Consensus       206 tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~  241 (255)
T PRK11300        206 TVLLIEHDMK-LVMGISDRIYVVNQGTPLANGTPEEI  241 (255)
T ss_pred             EEEEEeCCHH-HHHHhCCEEEEEECCeEEecCCHHHH
Confidence            9999999975 68899999999999999999998765

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.87  E-value=8.4e-22  Score=188.24  Aligned_cols=113  Identities=24%  Similarity=0.452  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHcCCcc--cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            4 DEINDIVEETIIKMGLQA--CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++..++++++++.+||.+  ..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus       108 ~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~  182 (242)
T cd03295         108 EKIRERADELLALVGLDPAEFADRYP-----HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQ  182 (242)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH
Confidence            344567899999999985  555544     5799999999999999999999999999999999999999999999998


Q ss_pred             hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      ++ |+|||+++|++. ++.+++|++++|++|++++.|++++.
T Consensus       183 ~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  223 (242)
T cd03295         183 QELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDEI  223 (242)
T ss_pred             HHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence            74 899999999975 67889999999999999999988765

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.87  E-value=6.9e-22  Score=186.00  Aligned_cols=111  Identities=32%  Similarity=0.491  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +..++++++++.+||.+..++.++     .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus       109 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~  182 (220)
T cd03263         109 EIKEEVELLLRVLGLTDKANKRAR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-G  182 (220)
T ss_pred             HHHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-C
Confidence            445678899999999887777654     6999999999999999999999999999999999999999999999976 5


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      .|+|+++|++. .+.+.+|++++|++|+++..|+++++
T Consensus       183 ~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         183 RSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             CEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence            99999999985 67788999999999999999987753

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.87  E-value=8.6e-22  Score=186.78  Aligned_cols=112  Identities=21%  Similarity=0.345  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHcCCc---ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            6 INDIVEETIIKMGLQ---ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~---~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      .+++++++++.+||.   +..+..+     +.|||||||||+||++++.+|++++|||||+|||..++..+.+.|+++++
T Consensus        99 ~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~  173 (230)
T TIGR02770        99 ARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ  173 (230)
T ss_pred             HHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHH
Confidence            345788999999997   3444444     56999999999999999999999999999999999999999999999987


Q ss_pred             c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + |+|||+++|++. ++..++|++++|++|+++..|++++..
T Consensus       174 ~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~  214 (230)
T TIGR02770       174 LFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF  214 (230)
T ss_pred             hcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            4 899999999975 688899999999999999999987653

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.87  E-value=1.1e-21  Score=189.11  Aligned_cols=113  Identities=25%  Similarity=0.369  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHcCCcccc-cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            4 DEINDIVEETIIKMGLQACA-ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      ++.++++.++++.+||.+.. +.     .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus       126 ~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~  200 (257)
T PRK10619        126 QEARERAVKYLAKVGIDERAQGK-----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE  200 (257)
T ss_pred             HHHHHHHHHHHHHcCCChhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence            34456788999999997653 44     3457999999999999999999999999999999999999999999999988


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      +|+|+|+++|++. ++.+++|++++|++|++++.|+.++.
T Consensus       201 ~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  239 (257)
T PRK10619        201 EGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGAPEQL  239 (257)
T ss_pred             cCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHh
Confidence            8999999999975 67888999999999999999988765

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.87  E-value=1.1e-21  Score=188.02  Aligned_cols=112  Identities=28%  Similarity=0.430  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            4 DEINDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~----~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      ++..++++++++.+||.    +..++.     ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus       115 ~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  189 (247)
T TIGR00972       115 KELDEIVEESLKKAALWDEVKDRLHDS-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE  189 (247)
T ss_pred             HHHHHHHHHHHHHcCCCcchhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            44556789999999997    555544     457999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      ++++ .|+|+++|++. ++.+++|++++|++|+++..|++++.
T Consensus       190 ~~~~-~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  230 (247)
T TIGR00972       190 LKKK-YTIVIVTHNMQ-QAARISDRTAFFYDGELVEYGPTEQI  230 (247)
T ss_pred             HHhc-CeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9874 89999999975 68889999999999999999998765

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=8.7e-22  Score=187.99  Aligned_cols=113  Identities=20%  Similarity=0.365  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.+++++++++.+||.+..+..+     +.||||||||++||++++.+|++|+|||||+|||+.++..+.+.+++++++
T Consensus       112 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  186 (241)
T PRK10895        112 EQREDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS  186 (241)
T ss_pred             HHHHHHHHHHHHHcCCHHHhhcch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc
Confidence            344567899999999987666554     579999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |.|+|+++|++. ++.+.+|++++|++|++++.|++++.
T Consensus       187 g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~  224 (241)
T PRK10895        187 GLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEI  224 (241)
T ss_pred             CCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence            999999999974 68899999999999999999998765

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1e-21  Score=186.48  Aligned_cols=112  Identities=18%  Similarity=0.292  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DG   84 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g   84 (437)
                      .+++++++++.+||++..++.++     .||||||||++||++++.+|++++|||||+|||..++..+.+.|+++++ .|
T Consensus       106 ~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~  180 (232)
T PRK10771        106 QREKLHAIARQMGIEDLLARLPG-----QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQ  180 (232)
T ss_pred             HHHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            45678999999999887777664     6999999999999999999999999999999999999999999999987 48


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      .|+|+++|++. ++.+.+|++++|++|++++.|+.++..
T Consensus       181 ~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~  218 (232)
T PRK10771        181 LTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL  218 (232)
T ss_pred             CEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            99999999975 678899999999999999999987654

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.87  E-value=7.4e-22  Score=184.54  Aligned_cols=108  Identities=28%  Similarity=0.532  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      .+..++++++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus       103 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~  177 (210)
T cd03269         103 EEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA  177 (210)
T ss_pred             HHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence            344567899999999988777655     469999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG  117 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G  117 (437)
                      |+|||+++|++. ++.+++|++++|++|++++.|
T Consensus       178 ~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         178 GKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             CCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence            899999999975 678889999999999998764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.8e-21  Score=189.85  Aligned_cols=114  Identities=22%  Similarity=0.368  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++.+++++++++.+||++..++.++     .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       114 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~  188 (279)
T PRK13635        114 REEMVERVDQALRQVGMEDFLNREPH-----RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE  188 (279)
T ss_pred             HHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            34556789999999999987777654     6999999999999999999999999999999999999999999999998


Q ss_pred             c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + |+|||+++|++. ++. .+|++++|++|++++.|+.++..
T Consensus       189 ~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~  228 (279)
T PRK13635        189 QKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIF  228 (279)
T ss_pred             cCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHh
Confidence            5 899999999976 455 59999999999999999988754

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=2e-21  Score=188.61  Aligned_cols=113  Identities=21%  Similarity=0.356  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..++++++++.+|+.+..|+.+     +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus       117 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~  191 (269)
T PRK13648        117 DEMHRRVSEALKQVDMLERADYEP-----NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE  191 (269)
T ss_pred             HHHHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            344567889999999988777654     569999999999999999999999999999999999999999999999874


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       |.|+|+++|++. ++.. +|++++|++|++++.|++++..
T Consensus       192 ~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~  230 (269)
T PRK13648        192 HNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEIF  230 (269)
T ss_pred             cCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence             899999999985 4555 9999999999999999988653

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=7.7e-22  Score=187.89  Aligned_cols=112  Identities=20%  Similarity=0.298  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHc-CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            6 INDIVEETIIKM-GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         6 ~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      ..++++++++.+ ++.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus       113 ~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~  187 (237)
T PRK11614        113 FQERIKWVYELFPRLHERRIQRA-----GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQG  187 (237)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCC
Confidence            345677788887 5766555544     5699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +|+|+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus       188 ~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~  225 (237)
T PRK11614        188 MTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDALL  225 (237)
T ss_pred             CEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence            99999999974 688999999999999999999988663

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.87  E-value=9.7e-22  Score=197.96  Aligned_cols=113  Identities=24%  Similarity=0.369  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-   83 (437)
                      +.+++++++++.+||.+..|+.+     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ 
T Consensus       107 ~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~  181 (354)
T TIGR02142       107 ERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF  181 (354)
T ss_pred             HHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence            34567899999999988777665     469999999999999999999999999999999999999999999999875 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |.|+|+++|++. ++..++|++++|++|+++..|+++++.
T Consensus       182 g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  220 (354)
T TIGR02142       182 GIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW  220 (354)
T ss_pred             CCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence            899999999975 788999999999999999999988764

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.87  E-value=1.1e-21  Score=185.36  Aligned_cols=110  Identities=27%  Similarity=0.471  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      .+++++++++.+|+++..++.++     .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+
T Consensus        90 ~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~  164 (223)
T TIGR03771        90 DFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT  164 (223)
T ss_pred             HHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence            34578899999999877766554     6999999999999999999999999999999999999999999999988899


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |+|+++|++. ++.+.+|+++++ +|++++.|+.++.
T Consensus       165 tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~  199 (223)
T TIGR03771       165 AILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQL  199 (223)
T ss_pred             EEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHh
Confidence            9999999975 688999999999 8999999998765

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.1e-21  Score=188.89  Aligned_cols=111  Identities=23%  Similarity=0.404  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      ..++++++++.+||.+..++.+     +.||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++++|.
T Consensus       115 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~  189 (255)
T PRK11231        115 DNARVNQAMEQTRINHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGK  189 (255)
T ss_pred             HHHHHHHHHHHcCCHHHHcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence            4457889999999988777655     46999999999999999999999999999999999999999999999988899


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |+|+++|++. ++.+++|++++|++|+++..|+.++.
T Consensus       190 tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  225 (255)
T PRK11231        190 TVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEV  225 (255)
T ss_pred             EEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHh
Confidence            9999999975 78899999999999999999988765

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.87  E-value=1.2e-21  Score=197.77  Aligned_cols=115  Identities=22%  Similarity=0.340  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++.+++++++++.+||++..|...+     .||||||||+.||++|+.+|++|+|||||+|||+.++.++.+.|+++++
T Consensus       138 ~~~~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~  212 (382)
T TIGR03415       138 EAERRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQA  212 (382)
T ss_pred             HHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence            45566789999999999887776654     6999999999999999999999999999999999999999999999987


Q ss_pred             c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + |+|+|+++|++. ++.+++|++++|++|+++..|++++..
T Consensus       213 ~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~  253 (382)
T TIGR03415       213 KLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV  253 (382)
T ss_pred             hcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            4 899999999974 788999999999999999999998764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.87  E-value=8.6e-22  Score=183.44  Aligned_cols=101  Identities=32%  Similarity=0.484  Sum_probs=92.9

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      ++++++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+
T Consensus       105 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti  179 (205)
T cd03226         105 EQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAV  179 (205)
T ss_pred             HHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEE
Confidence            57889999999988777655     4699999999999999999999999999999999999999999999998889999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEE
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSNGETI  114 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~G~~v  114 (437)
                      |+++|++. ++.+++|++++|++|+++
T Consensus       180 i~~sH~~~-~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         180 IVITHDYE-FLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             EEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence            99999975 678899999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.5e-21  Score=186.40  Aligned_cols=112  Identities=23%  Similarity=0.354  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +..+++++.++.+||.+..++.+     +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus       117 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~  191 (242)
T PRK11124        117 QALARAEKLLERLRLKPYADRFP-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETG  191 (242)
T ss_pred             HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence            34567889999999987776655     4699999999999999999999999999999999999999999999998789


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      +|+|+++|++. ++.+++|++++|.+|++++.|+.++.
T Consensus       192 ~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~  228 (242)
T PRK11124        192 ITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             CEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHh
Confidence            99999999975 67788999999999999999987653

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.87  E-value=6.6e-22  Score=194.40  Aligned_cols=117  Identities=23%  Similarity=0.377  Sum_probs=109.3

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      +++|++++|+++.+.|+|+|..|.+     +++|||||||||++||+|+++|++++||||.|.||...+.++...|+++.
T Consensus       106 ~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh  180 (338)
T COG3839         106 PKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLH  180 (338)
T ss_pred             chHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHH
Confidence            5788999999999999999998875     46799999999999999999999999999999999999999999999998


Q ss_pred             h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      + -|.|+|.+||+. .|+..+.||+++|++|++...|++.++.+
T Consensus       181 ~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~  223 (338)
T COG3839         181 ERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE  223 (338)
T ss_pred             HhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence            8 589999999996 58999999999999999999999998753

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.87  E-value=1.2e-21  Score=174.41  Aligned_cols=111  Identities=28%  Similarity=0.389  Sum_probs=100.6

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.+++|.++|+..||.+.++.     .+..|||||+|||+||||++.+|++|+.||||.+||+..+.++++++.++.
T Consensus       110 ~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein  184 (223)
T COG2884         110 PPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN  184 (223)
T ss_pred             CHHHHHHHHHHHHHHhccchhhhc-----CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence            567889999999999999987764     456899999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeC
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD  118 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~  118 (437)
                      +.|.||++++|+- .-+-.+-.|++.|.+|+++....
T Consensus       185 r~GtTVl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~~  220 (223)
T COG2884         185 RLGTTVLMATHDL-ELVNRMRHRVLALEDGRLVRDES  220 (223)
T ss_pred             hcCcEEEEEeccH-HHHHhccCcEEEEeCCEEEeccc
Confidence            9999999999994 44566678999999999987654

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.4e-21  Score=198.62  Aligned_cols=115  Identities=21%  Similarity=0.330  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++.+++++++++.+||++..++..     +.|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++
T Consensus       138 ~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~  212 (400)
T PRK10070        138 AEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA  212 (400)
T ss_pred             HHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence            3455678899999999988776655     57999999999999999999999999999999999999999999999986


Q ss_pred             -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       .|+|||+++|++. ++.+++|++++|++|+++..|++++..
T Consensus       213 ~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~  253 (400)
T PRK10070        213 KHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEIL  253 (400)
T ss_pred             HCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence             5899999999974 788999999999999999999987653

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.87  E-value=8.8e-22  Score=183.75  Aligned_cols=105  Identities=30%  Similarity=0.488  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      +++++++++.+||.+..++.+     +.|||||||||+||++++.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus       104 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t  178 (208)
T cd03268         104 KKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT  178 (208)
T ss_pred             HHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence            357888999999988777655     469999999999999999999999999999999999999999999999888899


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFG  117 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G  117 (437)
                      +|+++|++. ++.+++|++++|++|++++.|
T Consensus       179 ii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         179 VLISSHLLS-EIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             EEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence            999999975 677889999999999998765

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.87  E-value=1.5e-21  Score=185.85  Aligned_cols=118  Identities=19%  Similarity=0.296  Sum_probs=110.0

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      ++++|+++++.+.|+..||+..++..     +..|||||||||.+||+|+.+|+||++|||+|.|||--+.++.+.|.+|
T Consensus       136 v~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~L  210 (386)
T COG4175         136 VPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLEL  210 (386)
T ss_pred             CCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHH
Confidence            47899999999999999999888764     4679999999999999999999999999999999999999999999999


Q ss_pred             Hh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      .+ -++|||.++|+. +|.+++-||+.+|.+|+++..|+++|++.
T Consensus       211 q~~l~KTIvFitHDL-dEAlriG~rIaimkdG~ivQ~Gtp~eIl~  254 (386)
T COG4175         211 QAKLKKTIVFITHDL-DEALRIGDRIAIMKDGEIVQVGTPEEILL  254 (386)
T ss_pred             HHHhCCeEEEEecCH-HHHHhccceEEEecCCeEEEeCCHHHHHc
Confidence            87 589999999996 58999999999999999999999999863

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.87  E-value=1.3e-21  Score=183.52  Aligned_cols=106  Identities=31%  Similarity=0.436  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-C
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-G   84 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g   84 (437)
                      .+++++++++.+||.+..++.+     +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++ |
T Consensus       108 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~  182 (214)
T cd03297         108 DRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN  182 (214)
T ss_pred             HHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence            3457889999999987666654     469999999999999999999999999999999999999999999999875 8


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG  117 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G  117 (437)
                      +|+|+++|++. ++.+.+|++++|++|+++..|
T Consensus       183 ~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         183 IPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             cEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence            99999999974 678899999999999998765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.87  E-value=1.5e-21  Score=186.48  Aligned_cols=110  Identities=26%  Similarity=0.379  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      .+++++++++.+|+.+..++.+     +.||||||||++||++++.+|++|+|||||+|||+.++..+.+.|+++++ ++
T Consensus       120 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~  193 (242)
T TIGR03411       120 EKDRIEEVLETIGLADEADRLA-----GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KH  193 (242)
T ss_pred             HHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CC
Confidence            4567899999999988776655     46999999999999999999999999999999999999999999999976 68


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |+|+++|++. ++.+++|++++|++|+++..|+.++.
T Consensus       194 tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~~~~~~  229 (242)
T TIGR03411       194 SVVVVEHDME-FVRSIADKVTVLHQGSVLAEGSLDQV  229 (242)
T ss_pred             EEEEEECCHH-HHHHhCCEEEEEECCeEEeeCCHHHH
Confidence            9999999974 68889999999999999999987754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.87  E-value=1e-21  Score=184.95  Aligned_cols=111  Identities=20%  Similarity=0.312  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHc-CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            6 INDIVEETIIKM-GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         6 ~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      ..++++++++.+ ++.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus       108 ~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  182 (222)
T cd03224         108 RKARLERVYELFPRLKERRKQLA-----GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEG  182 (222)
T ss_pred             HHHHHHHHHHHHHhhhhhhhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCC
Confidence            345677888888 5776666554     4699999999999999999999999999999999999999999999998888


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      .|+|+++|++. ++.+++|++++|++|+++..|+.++.
T Consensus       183 ~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (222)
T cd03224         183 VTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAEL  219 (222)
T ss_pred             CEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHH
Confidence            99999999974 68899999999999999999988765

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=1.7e-21  Score=191.03  Aligned_cols=113  Identities=21%  Similarity=0.325  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741            5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-   82 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-   82 (437)
                      +..++++++++.++|. +..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ 
T Consensus       125 ~~~~~~~~ll~~~~L~~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~  199 (289)
T PRK13645        125 EAYKKVPELLKLVQLPEDYVKRSP-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE  199 (289)
T ss_pred             HHHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            3446788899999994 5565544     56999999999999999999999999999999999999999999999987 


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      .|+|||+++|++. ++.+++|++++|++|++++.|+.++..
T Consensus       200 ~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  239 (289)
T PRK13645        200 YKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFEIF  239 (289)
T ss_pred             cCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            4899999999975 688999999999999999999987653

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.87  E-value=1.6e-21  Score=188.84  Aligned_cols=113  Identities=19%  Similarity=0.321  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      +.+++++++++.+||. +..+..+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       125 ~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~  199 (265)
T TIGR02769       125 EQKARIAELLDMVGLRSEDADKLP-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA  199 (265)
T ss_pred             HHHHHHHHHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            3456789999999995 5566544     469999999999999999999999999999999999999999999999874


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       |.|||+++|++. .+.+++|++++|++|++++.|+.++..
T Consensus       200 ~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  239 (265)
T TIGR02769       200 FGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVEECDVAQLL  239 (265)
T ss_pred             cCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence             899999999975 678899999999999999999988664

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.87  E-value=1.2e-21  Score=183.44  Aligned_cols=106  Identities=25%  Similarity=0.478  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +.+++++++++.+||.+..++.+     ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus       108 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  182 (213)
T cd03235         108 ADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG  182 (213)
T ss_pred             HHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC
Confidence            34567899999999987777655     4699999999999999999999999999999999999999999999998888


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG  117 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G  117 (437)
                      .|+|+++|++. ++.+++|++++|++| +++.|
T Consensus       183 ~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g  213 (213)
T cd03235         183 MTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG  213 (213)
T ss_pred             CEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence            99999999975 688899999999876 55554

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.87  E-value=1.5e-21  Score=188.79  Aligned_cols=111  Identities=27%  Similarity=0.481  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~   83 (437)
                      +.+++++++++.+||.+..|..++     .||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++ .
T Consensus       128 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  202 (262)
T PRK09984        128 EQKQRALQALTRVGMVHFAHQRVS-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND  202 (262)
T ss_pred             HHHHHHHHHHHHcCCHHHHhCCcc-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhc
Confidence            345678999999999887776654     6999999999999999999999999999999999999999999999987 4


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM  121 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~  121 (437)
                      |.|||+++|++. .+.+.+|++++|++|++++.|++++
T Consensus       203 g~tvii~tH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~  239 (262)
T PRK09984        203 GITVVVTLHQVD-YALRYCERIVALRQGHVFYDGSSQQ  239 (262)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence            899999999974 5788999999999999999998875

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.87  E-value=1.4e-21  Score=196.52  Aligned_cols=111  Identities=23%  Similarity=0.384  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CC
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~   85 (437)
                      .++++++++.+||.+..+..+     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.
T Consensus       106 ~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~  180 (352)
T PRK11144        106 VAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINI  180 (352)
T ss_pred             HHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence            457899999999988777655     469999999999999999999999999999999999999999999999875 89


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |+|+++|++. ++.+++|++++|++|+++..|+++++.
T Consensus       181 tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~i~  217 (352)
T PRK11144        181 PILYVSHSLD-EILRLADRVVVLEQGKVKAFGPLEEVW  217 (352)
T ss_pred             eEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence            9999999974 789999999999999999999998764

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.87  E-value=2.2e-21  Score=184.64  Aligned_cols=112  Identities=28%  Similarity=0.466  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~   83 (437)
                      +..++++++++.+||.+..++.++     .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus       108 ~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~  182 (236)
T TIGR03864       108 EARERIAALLARLGLAERADDKVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQ  182 (236)
T ss_pred             HHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhC
Confidence            345678899999999887776654     6999999999999999999999999999999999999999999999986 6


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |.|+|+++|++. ++. .+|++++|++|+++..|++++..
T Consensus       183 ~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~  220 (236)
T TIGR03864       183 GLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELR  220 (236)
T ss_pred             CCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence            899999999985 454 49999999999999999887664

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.87  E-value=1.7e-21  Score=184.00  Aligned_cols=108  Identities=29%  Similarity=0.365  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.+++++++++.+||.+..++.++     .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus       117 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~  191 (224)
T cd03220         117 KEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ  191 (224)
T ss_pred             HHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence            3445578889999999888777664     69999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG  117 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G  117 (437)
                      |.|||+++|++. ++.+.+|++++|++|++++.|
T Consensus       192 ~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g  224 (224)
T cd03220         192 GKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG  224 (224)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence            899999999974 678889999999999998765

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=3.7e-21  Score=187.99  Aligned_cols=114  Identities=22%  Similarity=0.394  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++.+++++++++.+||.+..++..     +.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++
T Consensus       117 ~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~  191 (282)
T PRK13640        117 RPEMIKIVRDVLADVGMLDYIDSEP-----ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKK  191 (282)
T ss_pred             HHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence            3455678999999999987766654     57999999999999999999999999999999999999999999999987


Q ss_pred             c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + |.|||+++|++. .+ ..+|++++|++|+++..|++++..
T Consensus       192 ~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~  231 (282)
T PRK13640        192 KNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIF  231 (282)
T ss_pred             hcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence            4 899999999986 45 579999999999999999988764

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.86  E-value=1.9e-21  Score=187.32  Aligned_cols=111  Identities=23%  Similarity=0.438  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      ..++++++++.+||.+..++.++     .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|.
T Consensus       114 ~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~  188 (256)
T TIGR03873       114 DAAVVDRALARTELSHLADRDMS-----TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV  188 (256)
T ss_pred             HHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCC
Confidence            34578899999999877776654     6999999999999999999999999999999999999999999999988889


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |+|+++|++. ++.+.+|++++|++|+++..|+.++.
T Consensus       189 tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  224 (256)
T TIGR03873       189 TVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREV  224 (256)
T ss_pred             EEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHh
Confidence            9999999975 68899999999999999999988765

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.86  E-value=2.4e-21  Score=186.25  Aligned_cols=112  Identities=22%  Similarity=0.304  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-   83 (437)
                      +..++++++++.+|+.+..+...     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ 
T Consensus       122 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~  196 (252)
T TIGR03005       122 EAEKRAMELLDMVGLADKADHMP-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEH  196 (252)
T ss_pred             HHHHHHHHHHHHcCChhHhhcCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence            44567889999999987766544     579999999999999999999999999999999999999999999999874 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |.|+|+++|++. ++.+++|++++|++|+++..|+.++.
T Consensus       197 ~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  234 (252)
T TIGR03005       197 DLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDEI  234 (252)
T ss_pred             CcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            899999999975 68889999999999999999987755

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.86  E-value=2.2e-21  Score=183.45  Aligned_cols=105  Identities=47%  Similarity=0.773  Sum_probs=94.5

Q ss_pred             HHHHH-HHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            8 DIVEE-TIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         8 ~~v~~-~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      +++++ .++.+++.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|
T Consensus       121 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~t  195 (226)
T cd03234         121 KRVEDVLLRDLALTRIGGNLV-----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRI  195 (226)
T ss_pred             HHHHHHHHHhhcchhhhcccc-----cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCE
Confidence            34555 888899887666554     579999999999999999999999999999999999999999999999888899


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFG  117 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G  117 (437)
                      +|+++|++..++.+++|++++|++|++++.|
T Consensus       196 iii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         196 VILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             EEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence            9999999866799999999999999998865

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.86  E-value=1.6e-21  Score=182.41  Aligned_cols=107  Identities=28%  Similarity=0.490  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.+++++++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ 
T Consensus       105 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-  178 (211)
T cd03264         105 KEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-  178 (211)
T ss_pred             HHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-
Confidence            344567899999999988777655     46999999999999999999999999999999999999999999999986 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG  117 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G  117 (437)
                      +.|+|+++|++. .+.+++|++++|++|+++..|
T Consensus       179 ~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         179 DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence            589999999975 577899999999999998765

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.86  E-value=2.1e-21  Score=187.37  Aligned_cols=112  Identities=26%  Similarity=0.377  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEIL------TQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~------~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      .+++++++++.+||.+..++.++     .||||||||++||++|+      .+|++++|||||+|||+.++..+.+.|++
T Consensus       111 ~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  185 (258)
T PRK13548        111 DDALVAAALAQVDLAHLAGRDYP-----QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQ  185 (258)
T ss_pred             HHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            44578899999999887776654     69999999999999999      59999999999999999999999999999


Q ss_pred             HH-hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           80 IA-LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        80 l~-~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ++ ++|.|||+++|++. ++.+++|++++|++|+++..|++++..
T Consensus       186 ~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~  229 (258)
T PRK13548        186 LAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADGTPAEVL  229 (258)
T ss_pred             HHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence            98 57899999999974 688899999999999999999887653

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.2e-21  Score=187.94  Aligned_cols=112  Identities=21%  Similarity=0.375  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DG   84 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g   84 (437)
                      .+++++++++.+||++..++.+     +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++ .|
T Consensus       120 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~  194 (265)
T PRK10253        120 DEEAVTKAMQATGITHLADQSV-----DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKG  194 (265)
T ss_pred             HHHHHHHHHHHcCCHHHhcCCc-----ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC
Confidence            3457889999999987766655     56999999999999999999999999999999999999999999999987 48


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      .|+|+++|++. ++.+++|++++|++|+++..|++++..
T Consensus       195 ~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  232 (265)
T PRK10253        195 YTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKEIV  232 (265)
T ss_pred             CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            99999999975 689999999999999999999987653

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.6e-21  Score=186.71  Aligned_cols=111  Identities=23%  Similarity=0.363  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            5 EINDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~----~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +.+++++++++.+|+.    +..++     .++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus       126 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l  200 (258)
T PRK14268        126 DLDGVVENALRSAALWDETSDRLKS-----PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL  200 (258)
T ss_pred             HHHHHHHHHHHHcCCCcchhhhhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence            3445788899999984    33333     34579999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      ++ |+|||+++|++. ++.+++|++++|++|++++.|+++++
T Consensus       201 ~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  240 (258)
T PRK14268        201 KK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFGQTRQI  240 (258)
T ss_pred             hh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            65 799999999974 67889999999999999999998765

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.5e-21  Score=185.93  Aligned_cols=115  Identities=27%  Similarity=0.359  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      ..+.++++++.+||.+...+.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +++
T Consensus       119 ~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~  196 (250)
T PRK14245        119 IRQRVEETLKGAALWDEVKDKL-KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDY  196 (250)
T ss_pred             HHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCC
Confidence            3457889999999864322111 23456799999999999999999999999999999999999999999999995 479


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |||+++|++. ++.+.+|++++|++|++++.|+++++.
T Consensus       197 tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~~~~~~  233 (250)
T PRK14245        197 TIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDDTKKIF  233 (250)
T ss_pred             eEEEEeCCHH-HHHhhCCEEEEEECCEEEEECCHHHHh
Confidence            9999999975 688999999999999999999988764

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.86  E-value=3e-21  Score=183.73  Aligned_cols=114  Identities=29%  Similarity=0.405  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      .+..+.++++++.+||.+..++.+     +.||||||||++||++++.+|++++|||||+|||..++..+.+.|++++++
T Consensus       104 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~  178 (235)
T cd03299         104 KEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKE  178 (235)
T ss_pred             HHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHh
Confidence            345567888999999988777766     469999999999999999999999999999999999999999999999874


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       |+|+|+++|++. ++.+.+|++++|++|+++..|+.++..
T Consensus       179 ~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~  218 (235)
T cd03299         179 FGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF  218 (235)
T ss_pred             cCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence             999999999974 688899999999999999999877553

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.86  E-value=1.8e-21  Score=182.03  Aligned_cols=106  Identities=25%  Similarity=0.364  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DG   84 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g   84 (437)
                      .+++++++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++ .|
T Consensus       105 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~  179 (211)
T cd03298         105 DRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETK  179 (211)
T ss_pred             HHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            4557899999999988777655     46999999999999999999999999999999999999999999999986 48


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG  117 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G  117 (437)
                      .|+|+++|++. ++.+++|++++|++|+++..|
T Consensus       180 ~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         180 MTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             CEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence            99999999974 688899999999999998754

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2.3e-21  Score=187.72  Aligned_cols=111  Identities=31%  Similarity=0.411  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-C
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-G   84 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g   84 (437)
                      .+++++++++.+||.+..++.++     .||||||||++||++|+.+|++|+|||||+|||..++..+.+.|++++++ |
T Consensus       124 ~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~  198 (265)
T PRK10575        124 DREKVEEAISLVGLKPLAHRLVD-----SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG  198 (265)
T ss_pred             HHHHHHHHHHHcCCHHHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            34678999999999877776654     69999999999999999999999999999999999999999999999874 8


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      .|||+++|++. ++.+.+|++++|++|+++..|+.++.
T Consensus       199 ~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~~  235 (265)
T PRK10575        199 LTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAEL  235 (265)
T ss_pred             CEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHh
Confidence            99999999975 68899999999999999999988765

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.86  E-value=1.9e-21  Score=183.54  Aligned_cols=107  Identities=30%  Similarity=0.452  Sum_probs=98.5

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      ++++++++.+||++..|..+     +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|+|+
T Consensus       103 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~ti  177 (223)
T TIGR03740       103 SRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITV  177 (223)
T ss_pred             HHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEE
Confidence            46788999999998777655     4699999999999999999999999999999999999999999999998889999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEEEeeChh
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK  120 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~  120 (437)
                      |+++|++. ++.+.+|++++|++|++++.|++.
T Consensus       178 ii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~  209 (223)
T TIGR03740       178 ILSSHILS-EVQQLADHIGIISEGVLGYQGKIN  209 (223)
T ss_pred             EEEcCCHH-HHHHhcCEEEEEeCCEEEEecChh
Confidence            99999975 688899999999999999999875

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.86  E-value=2.2e-21  Score=171.07  Aligned_cols=116  Identities=25%  Similarity=0.383  Sum_probs=107.4

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +++.|..++.+.+|...|+.+.+|.     ++..|||||+||++|||+|+.+|+++++|||||.||+.-.-++.+.+++|
T Consensus       124 ~~k~ea~e~Ae~~L~kVGi~ek~~~-----YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~L  198 (256)
T COG4598         124 VSKAEAIERAEKYLAKVGIAEKADA-----YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDL  198 (256)
T ss_pred             CCHHHHHHHHHHHHHHhCchhhhhc-----CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHH
Confidence            3677888899999999999887764     56679999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |++|+|.++++|.. ...-+...+|++|++|.+-..|+++++
T Consensus       199 AeEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~iEE~G~P~qv  239 (256)
T COG4598         199 AEEGRTMVVVTHEM-GFARDVSSHVIFLHQGKIEEEGPPEQV  239 (256)
T ss_pred             HHhCCeEEEEeeeh-hHHHhhhhheEEeecceecccCChHHH
Confidence            99999999999996 467888999999999999999999976

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.86  E-value=2.3e-21  Score=181.28  Aligned_cols=102  Identities=32%  Similarity=0.548  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +.+++++++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus       110 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~  184 (211)
T cd03225         110 EIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEG  184 (211)
T ss_pred             HHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcC
Confidence            34567889999999987766655     4699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~  112 (437)
                      +|+|+++|++. ++.+++|++++|++|+
T Consensus       185 ~tvi~~sH~~~-~~~~~~d~i~~l~~G~  211 (211)
T cd03225         185 KTIIIVTHDLD-LLLELADRVIVLEDGK  211 (211)
T ss_pred             CEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence            99999999975 6888899999999885

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.86  E-value=2.7e-21  Score=184.16  Aligned_cols=108  Identities=26%  Similarity=0.405  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..++++++++.+||.+..|+.++     .||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus       128 ~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  202 (236)
T cd03267         128 ARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE  202 (236)
T ss_pred             HHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            3445678889999999988887664     69999999999999999999999999999999999999999999999874


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741           84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG  117 (437)
Q Consensus        84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G  117 (437)
                       |+|||+++|++. ++.+++|++++|++|++++.|
T Consensus       203 ~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g  236 (236)
T cd03267         203 RGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG  236 (236)
T ss_pred             CCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence             899999999975 688999999999999998765

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.86  E-value=2.2e-21  Score=181.69  Aligned_cols=104  Identities=28%  Similarity=0.417  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..++++++++.+||++..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus       111 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~  185 (214)
T cd03292         111 REIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA  185 (214)
T ss_pred             HHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc
Confidence            344567889999999988777655     469999999999999999999999999999999999999999999999878


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGET  113 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~  113 (437)
                      |.|+|+++|++. .+.+++|++++|++|++
T Consensus       186 ~~tiiivtH~~~-~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         186 GTTVVVATHAKE-LVDTTRHRVIALERGKL  214 (214)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence            999999999974 67788999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=3.6e-21  Score=185.22  Aligned_cols=112  Identities=23%  Similarity=0.305  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            5 EINDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~----~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +.++++++.++.+++.    +..++     .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus       122 ~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  196 (254)
T PRK14273        122 KLDEIVEQSLKKSALWNEVKDKLNT-----NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL  196 (254)
T ss_pred             HHHHHHHHHHHHhCCchhhHHHHhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence            3456788899999873    33444     34679999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ++ +.|+|+++|++. ++.+++|++++|++|+++..|++++..
T Consensus       197 ~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  237 (254)
T PRK14273        197 KE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCIEEESSTDELF  237 (254)
T ss_pred             hc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            64 789999999975 678899999999999999999988663

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.86  E-value=3.2e-21  Score=186.94  Aligned_cols=113  Identities=19%  Similarity=0.307  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      +..++++++++.+||. +..+..+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       124 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~  198 (267)
T PRK15112        124 QREKQIIETLRQVGLLPDHASYYP-----HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK  198 (267)
T ss_pred             HHHHHHHHHHHHcCCChHHHhcCc-----hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence            4456788999999994 5555544     579999999999999999999999999999999999999999999999874


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       |.|||+++|++. ++.+++|++++|++|+++..|+.++..
T Consensus       199 ~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~  238 (267)
T PRK15112        199 QGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGSTADVL  238 (267)
T ss_pred             cCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHh
Confidence             899999999975 688899999999999999999877653

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.86  E-value=2.5e-21  Score=181.39  Aligned_cols=102  Identities=28%  Similarity=0.457  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +.+++++++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus       113 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~  187 (214)
T TIGR02673       113 EIQRRVGAALRQVGLEHKADAFP-----EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG  187 (214)
T ss_pred             HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC
Confidence            34567899999999987666655     4699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~  112 (437)
                      +|+|+++|++. ++.+++|++++|++|+
T Consensus       188 ~tii~~tH~~~-~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       188 TTVIVATHDLS-LVDRVAHRVIILDDGR  214 (214)
T ss_pred             CEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence            99999999974 7888999999999885

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.86  E-value=4.1e-21  Score=184.23  Aligned_cols=112  Identities=26%  Similarity=0.366  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh-------CCCEEEEeCCCCCCCHHHHHHHHHHH
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILT-------QPTVLLLDEPTSGLDSASAFFVIQVL   77 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~-------~p~ll~lDEPtsgLD~~~~~~i~~~l   77 (437)
                      +..++++++++.+||.+..++.+     +.||||||||++||++|+.       +|++++|||||+|||+.++..+.+.|
T Consensus       102 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L  176 (248)
T PRK03695        102 AVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLL  176 (248)
T ss_pred             HHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            34567899999999987776655     4699999999999999998       67999999999999999999999999


Q ss_pred             HHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           78 KCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        78 ~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      ++++++|.|+|+++|++. ++.+++|++++|++|+++..|+.++.
T Consensus       177 ~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  220 (248)
T PRK03695        177 SELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV  220 (248)
T ss_pred             HHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence            999888999999999974 68899999999999999999987755

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.86  E-value=4.2e-21  Score=185.23  Aligned_cols=112  Identities=23%  Similarity=0.383  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            5 EINDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      +.+++++++++.+++.+ ..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       126 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  200 (258)
T PRK11701        126 DIRATAGDWLERVEIDAARIDDLP-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE  200 (258)
T ss_pred             HHHHHHHHHHHHcCCChhHHhCCC-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence            34557889999999974 455544     569999999999999999999999999999999999999999999999874


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                       |.|||+++|++. .+.+.+|++++|++|++++.|++++.
T Consensus       201 ~~~tii~isH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~  239 (258)
T PRK11701        201 LGLAVVIVTHDLA-VARLLAHRLLVMKQGRVVESGLTDQV  239 (258)
T ss_pred             cCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence             899999999974 67788999999999999999998765

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=4.9e-21  Score=181.91  Aligned_cols=109  Identities=25%  Similarity=0.339  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-   82 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-   82 (437)
                      ++.+++++++++.+||.+..++.+     +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++ 
T Consensus       120 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~  194 (233)
T PRK11629        120 AEINSRALEMLAAVGLEHRANHRP-----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL  194 (233)
T ss_pred             HHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Confidence            344568899999999987776655     46999999999999999999999999999999999999999999999986 


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeCh
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA  119 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~  119 (437)
                      +|+|||+++|++. ++.. +|++++|++|+++..|+.
T Consensus       195 ~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~  229 (233)
T PRK11629        195 QGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL  229 (233)
T ss_pred             CCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence            5899999999975 4555 589999999999988864

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.86  E-value=2.6e-21  Score=181.85  Aligned_cols=102  Identities=26%  Similarity=0.439  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~   83 (437)
                      +.+++++++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .
T Consensus       116 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~  190 (218)
T cd03255         116 ERRERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEA  190 (218)
T ss_pred             HHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence            34567899999999987776655     46999999999999999999999999999999999999999999999987 5


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGET  113 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~  113 (437)
                      |+|||+++|++. ++. .+|++++|++|++
T Consensus       191 ~~tii~~sH~~~-~~~-~~d~v~~l~~G~i  218 (218)
T cd03255         191 GTTIVVVTHDPE-LAE-YADRIIELRDGKI  218 (218)
T ss_pred             CCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence            899999999985 454 8999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.86  E-value=6.4e-21  Score=183.17  Aligned_cols=111  Identities=27%  Similarity=0.400  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      .++++++++.+||. +..++..+    .+||||||||++||++|+.+|++++|||||+|||..++..+.+.|++++++|.
T Consensus       127 ~~~~~~~l~~~~l~~~~~~~~~~----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~  202 (252)
T CHL00131        127 LEIINEKLKLVGMDPSFLSRNVN----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSEN  202 (252)
T ss_pred             HHHHHHHHHHcCCchhhhccccc----cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence            45678899999996 34454442    25999999999999999999999999999999999999999999999988899


Q ss_pred             EEEEEecCCchHHHhh-cCeEEEEeCCeEEEeeChhHH
Q 013741           86 IVVCSIHQPSSHLFYL-FDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~-fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |||+++|++. .+... +|++++|++|++++.|+++.+
T Consensus       203 tii~~tH~~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~  239 (252)
T CHL00131        203 SIILITHYQR-LLDYIKPDYVHVMQNGKIIKTGDAELA  239 (252)
T ss_pred             EEEEEecCHH-HHHhhhCCEEEEEeCCEEEEecChhhh
Confidence            9999999975 45555 899999999999999998854

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=5.2e-21  Score=183.64  Aligned_cols=117  Identities=23%  Similarity=0.311  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..++++++++.+||.+..+.. -+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ 
T Consensus       117 ~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-  194 (250)
T PRK14247        117 KELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-  194 (250)
T ss_pred             HHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-
Confidence            34456788999999986421111 1234467999999999999999999999999999999999999999999999965 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |+|+|+++|++. ++.+.+|++++|++|+++..|++++..
T Consensus       195 ~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14247        195 DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTREVF  233 (250)
T ss_pred             CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHHHHH
Confidence            799999999975 678899999999999999999988663

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.86  E-value=3.6e-21  Score=203.17  Aligned_cols=112  Identities=19%  Similarity=0.376  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +.+++++++++.+||.+..|+.++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       121 ~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g  195 (510)
T PRK09700        121 EMRVRAAMMLLRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEG  195 (510)
T ss_pred             HHHHHHHHHHHHcCCCCCcccchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence            445688999999999887777664     699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      .|||+++|++. .+.+++|++++|++|++++.|++++.
T Consensus       196 ~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~  232 (510)
T PRK09700        196 TAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGMVSDV  232 (510)
T ss_pred             CEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecchhhC
Confidence            99999999974 68889999999999999999998754

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=5.6e-21  Score=185.67  Aligned_cols=113  Identities=21%  Similarity=0.407  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.+++++++++.+||.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       117 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~  191 (271)
T PRK13632        117 KKMKDIIDDLAKKVGMEDYLDKEP-----QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT  191 (271)
T ss_pred             HHHHHHHHHHHHHcCCHHHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            344567899999999988777765     469999999999999999999999999999999999999999999999876


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       ++|+|+++|++. ++ ..+|++++|++|+++..|+.++..
T Consensus       192 ~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~  230 (271)
T PRK13632        192 RKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKEIL  230 (271)
T ss_pred             cCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHHHh
Confidence             589999999986 45 479999999999999999987653

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1e-20  Score=184.48  Aligned_cols=113  Identities=22%  Similarity=0.314  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..++++++++.+||.+..++.+     ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus       115 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~  189 (277)
T PRK13642        115 EEMIKRVDEALLAVNMLDFKTREP-----ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK  189 (277)
T ss_pred             HHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            344567899999999988776654     579999999999999999999999999999999999999999999999885


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       |.|||+++|++.. +. .+|++++|++|+++..|++++..
T Consensus       190 ~g~tiil~sH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~~~  228 (277)
T PRK13642        190 YQLTVLSITHDLDE-AA-SSDRILVMKAGEIIKEAAPSELF  228 (277)
T ss_pred             cCCEEEEEeCCHHH-HH-hCCEEEEEECCEEEEeCCHHHHh
Confidence             9999999999764 54 59999999999999999987653

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.85  E-value=5.6e-21  Score=183.74  Aligned_cols=112  Identities=22%  Similarity=0.372  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741            6 INDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D   83 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~   83 (437)
                      .+++++++++.+|+.+ ..++.+     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .
T Consensus       124 ~~~~~~~~l~~l~l~~~~~~~~~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~  198 (253)
T TIGR02323       124 IRAAAHDWLEEVEIDPTRIDDLP-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDL  198 (253)
T ss_pred             HHHHHHHHHHHcCCChhhhhcCc-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc
Confidence            3467889999999963 555544     56999999999999999999999999999999999999999999999876 4


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |.|+|+++|++. ++.+.+|++++|++|+++..|+.++..
T Consensus       199 ~~tii~vsH~~~-~~~~~~d~~~~l~~G~i~~~~~~~~~~  237 (253)
T TIGR02323       199 GLAVIIVTHDLG-VARLLAQRLLVMQQGRVVESGLTDQVL  237 (253)
T ss_pred             CCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEECCHHHHh
Confidence            899999999974 678889999999999999999887553

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.85  E-value=4.9e-21  Score=179.49  Aligned_cols=106  Identities=20%  Similarity=0.328  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CC
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~   85 (437)
                      +++++++++.+||.+..++.+     +.||||||||++||++++.+|++++|||||+|||..++..+.+.|++++++ |.
T Consensus       106 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~  180 (213)
T TIGR01277       106 QEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQR  180 (213)
T ss_pred             HHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence            457889999999987766655     479999999999999999999999999999999999999999999999874 89


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeC
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD  118 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~  118 (437)
                      |+|+++|++. ++.+.+|++++|++|+++..|+
T Consensus       181 tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       181 TLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             EEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence            9999999974 6778999999999999998875

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.85  E-value=7.1e-21  Score=180.72  Aligned_cols=112  Identities=26%  Similarity=0.381  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-   83 (437)
                      +..++++++++.+||.+..++.+     +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++ 
T Consensus       106 ~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~  180 (232)
T cd03300         106 EIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL  180 (232)
T ss_pred             HHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence            34557889999999988777655     479999999999999999999999999999999999999999999999874 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |+|||+++|++. ++.+.+|++++|++|++++.|+.++.
T Consensus       181 ~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~  218 (232)
T cd03300         181 GITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEI  218 (232)
T ss_pred             CCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHH
Confidence            899999999974 68899999999999999999987655

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.85  E-value=5.4e-21  Score=185.88  Aligned_cols=110  Identities=25%  Similarity=0.423  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      .+++++++++.+||.+..++.++     .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+
T Consensus       119 ~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~  193 (272)
T PRK15056        119 DRQIVTAALARVDMVEFRHRQIG-----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGK  193 (272)
T ss_pred             HHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCC
Confidence            34578889999999988777665     5999999999999999999999999999999999999999999999988899


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |||+++|++. ++.+++|+++++ +|++++.|++++.
T Consensus       194 tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~  228 (272)
T PRK15056        194 TMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETT  228 (272)
T ss_pred             EEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhc
Confidence            9999999974 688899999877 8999999988765

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=6e-21  Score=183.51  Aligned_cols=115  Identities=21%  Similarity=0.317  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +.++++++.++.+||.+...+.. +..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |
T Consensus       121 ~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~  198 (253)
T PRK14242        121 YLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-R  198 (253)
T ss_pred             HHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C
Confidence            34567888999999864322212 234567999999999999999999999999999999999999999999999964 7


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      +|||+++|++. ++.+++|++++|++|+++..|++++.
T Consensus       199 ~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~  235 (253)
T PRK14242        199 YTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEVGPTEQI  235 (253)
T ss_pred             CeEEEEEecHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            89999999975 67889999999999999999988755

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.85  E-value=4.7e-21  Score=179.38  Aligned_cols=103  Identities=28%  Similarity=0.421  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +.+++++++++.+|+.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus       111 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~  185 (213)
T cd03262         111 EAEERALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG  185 (213)
T ss_pred             HHHHHHHHHHHHcCCHhHhhhCc-----cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcC
Confidence            44567889999999987776655     4699999999999999999999999999999999999999999999998888


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGET  113 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~  113 (437)
                      +|+|+++|++. ++.+++|++++|++|++
T Consensus       186 ~tvi~~sh~~~-~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         186 MTMVVVTHEMG-FAREVADRVIFMDDGRI  213 (213)
T ss_pred             CEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence            99999999974 68889999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.85  E-value=1.1e-20  Score=181.03  Aligned_cols=119  Identities=28%  Similarity=0.387  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      .+++++.++.++|. +..++.+.    +.||||||||++||++++.+|++|+|||||+|||..++..+.+.|+++++.|+
T Consensus       121 ~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~  196 (248)
T PRK09580        121 QDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKR  196 (248)
T ss_pred             HHHHHHHHHHcCCChhhcccCCC----CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCC
Confidence            45678888999984 34444331    36999999999999999999999999999999999999999999999988889


Q ss_pred             EEEEEecCCchHHHhh-cCeEEEEeCCeEEEeeChhHHHHHHHHcCC
Q 013741           86 IVVCSIHQPSSHLFYL-FDDLLLLSNGETIYFGDAKMAVKFFAEAGF  131 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~-fd~v~~L~~G~~v~~G~~~~~~~~f~~~g~  131 (437)
                      |||+++|++. .+... +|++++|++|++++.|+.+.+ +.++..++
T Consensus       197 tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~-~~~~~~~~  241 (248)
T PRK09580        197 SFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLV-KQLEEQGY  241 (248)
T ss_pred             EEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCHHHH-HHHHhcCC
Confidence            9999999975 45555 899999999999999998855 33343333

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.85  E-value=7.9e-21  Score=196.19  Aligned_cols=116  Identities=23%  Similarity=0.314  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..++++++++.+||.+..+..+     +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       118 ~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~  192 (549)
T PRK13545        118 EKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ  192 (549)
T ss_pred             HHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhC
Confidence            344567888999999988777665     469999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKF  125 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~  125 (437)
                      |.|||+++|++. ++.++||++++|++|++++.|+++++.+-
T Consensus       193 G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~  233 (549)
T PRK13545        193 GKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDH  233 (549)
T ss_pred             CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence            999999999974 68889999999999999999999877543

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.85  E-value=7e-21  Score=183.25  Aligned_cols=110  Identities=21%  Similarity=0.334  Sum_probs=98.2

Q ss_pred             HHHHHHHHHcCCcc---cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741            8 DIVEETIIKMGLQA---CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D   83 (437)
Q Consensus         8 ~~v~~~l~~l~L~~---~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~   83 (437)
                      ++++++++.+||.+   ..++.     ++.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++ .
T Consensus       116 ~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~  190 (254)
T PRK10418        116 ATLTAALEAVGLENAARVLKLY-----PFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKR  190 (254)
T ss_pred             HHHHHHHHHcCCCChhhhhhcC-----CcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhc
Confidence            57888999999976   23443     457999999999999999999999999999999999999999999999987 4


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |.|||+++|++. ++.+.+|++++|++|+++..|++++..
T Consensus       191 g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~  229 (254)
T PRK10418        191 ALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGDVETLF  229 (254)
T ss_pred             CcEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            899999999975 677899999999999999999988653

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=6.3e-21  Score=183.70  Aligned_cols=111  Identities=24%  Similarity=0.367  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-   82 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-   82 (437)
                      ++..++++++++.+||.+..++.+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ 
T Consensus       103 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~  177 (255)
T PRK11248        103 MQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE  177 (255)
T ss_pred             HHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence            344567899999999987776654     46999999999999999999999999999999999999999999999965 


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEe--CCeEEEeeChh
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLS--NGETIYFGDAK  120 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~--~G~~v~~G~~~  120 (437)
                      +|+|||+++|++. ++.+++|++++|+  +|+++..++.+
T Consensus       178 ~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~  216 (255)
T PRK11248        178 TGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN  216 (255)
T ss_pred             cCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence            6899999999975 7889999999998  59999887654

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.85  E-value=7.3e-21  Score=181.27  Aligned_cols=113  Identities=23%  Similarity=0.336  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-   83 (437)
                      +..+.++++++.+++.+..++..     +.||||||||++||++++.+|++++|||||+|||..++..+.+.|++++++ 
T Consensus       106 ~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~  180 (237)
T TIGR00968       106 KIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEV  180 (237)
T ss_pred             HHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence            34567889999999987777655     469999999999999999999999999999999999999999999999875 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |+|+|+++|++. ++.+.+|++++|++|++++.|+.++..
T Consensus       181 ~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~  219 (237)
T TIGR00968       181 HVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY  219 (237)
T ss_pred             CCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence            899999999974 688999999999999999999987653

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.85  E-value=5.7e-21  Score=202.49  Aligned_cols=114  Identities=22%  Similarity=0.362  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHcCCccc---ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            3 NDEINDIVEETIIKMGLQAC---AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~---~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      +++.+++++++++.+||.+.   .+..+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus       127 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~  201 (529)
T PRK15134        127 REAARGEILNCLDRVGIRQAAKRLTDYP-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRE  201 (529)
T ss_pred             HHHHHHHHHHHHHHCCCCChHHHHhhCC-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHH
Confidence            34556789999999999752   35544     57999999999999999999999999999999999999999999999


Q ss_pred             HHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           80 IALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        80 l~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      ++++ |.|||+++|++. .+.+++|++++|++|++++.|++++.
T Consensus       202 l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~  244 (529)
T PRK15134        202 LQQELNMGLLFITHNLS-IVRKLADRVAVMQNGRCVEQNRAATL  244 (529)
T ss_pred             HHHhcCCeEEEEcCcHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            9875 899999999975 67889999999999999999988765

>PRK10908 cell division protein FtsE; Provisional

Probab=99.85  E-value=6.7e-21  Score=179.65  Aligned_cols=105  Identities=29%  Similarity=0.370  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..+++++.++.+||.+..++.+     +.||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       112 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  186 (222)
T PRK10908        112 DDIRRRVSAALDKVGLLDKAKNFP-----IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV  186 (222)
T ss_pred             HHHHHHHHHHHHHcCChhhhhCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC
Confidence            344557889999999987766654     469999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETI  114 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v  114 (437)
                      |.|+|+++|++. ++.+.+|++++|++|+++
T Consensus       187 ~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~  216 (222)
T PRK10908        187 GVTVLMATHDIG-LISRRSYRMLTLSDGHLH  216 (222)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence            899999999975 688889999999999974

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.85  E-value=6e-21  Score=183.94  Aligned_cols=108  Identities=23%  Similarity=0.358  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCC
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~   85 (437)
                      +++++++++.+||.+..+..+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|.
T Consensus       111 ~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~  185 (257)
T PRK11247        111 RDAALQALAAVGLADRANEWP-----AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGF  185 (257)
T ss_pred             HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            457889999999987766654     46999999999999999999999999999999999999999999999976 589


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChh
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK  120 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~  120 (437)
                      |||+++|++. ++.+++|++++|++|++++.|+.+
T Consensus       186 tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        186 TVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             EEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence            9999999975 678899999999999999988754

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=8.3e-21  Score=183.38  Aligned_cols=117  Identities=28%  Similarity=0.335  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.+++++++++.+++.+...... +..+..||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++ 
T Consensus       127 ~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-  204 (260)
T PRK10744        127 AEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-  204 (260)
T ss_pred             HHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-
Confidence            344567899999999843111111 223457999999999999999999999999999999999999999999999964 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +.|+|+++|++. ++.+++|++++|++|+++..|+.++..
T Consensus       205 ~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  243 (260)
T PRK10744        205 DYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEFGNTDTIF  243 (260)
T ss_pred             CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            789999999975 678899999999999999999987653

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.85  E-value=6.4e-21  Score=180.27  Aligned_cols=101  Identities=22%  Similarity=0.367  Sum_probs=90.5

Q ss_pred             HHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEE
Q 013741           11 EETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIVV   88 (437)
Q Consensus        11 ~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi   88 (437)
                      +++++.++|. +..+..+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||
T Consensus       126 ~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii  200 (228)
T cd03257         126 LLLLVGVGLPEEVLNRYP-----HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLL  200 (228)
T ss_pred             HHHHHHCCCChhHhhCCc-----hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence            5788999995 4555544     469999999999999999999999999999999999999999999999875 89999


Q ss_pred             EEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741           89 CSIHQPSSHLFYLFDDLLLLSNGETIYFG  117 (437)
Q Consensus        89 ~t~hqp~~~i~~~fd~v~~L~~G~~v~~G  117 (437)
                      +++|++. ++.+.+|++++|++|+++..|
T Consensus       201 ~~sH~~~-~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         201 FITHDLG-VVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             EEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence            9999975 677889999999999998764

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=8.6e-21  Score=182.26  Aligned_cols=115  Identities=21%  Similarity=0.381  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +.++.++++++.+||.+...+.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |
T Consensus       121 ~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~  198 (251)
T PRK14244        121 KLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-N  198 (251)
T ss_pred             HHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C
Confidence            34456788999999975322222 224467999999999999999999999999999999999999999999999864 8


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      +|+|+++|++. ++.+.+|++++|++|+++..|++++.
T Consensus       199 ~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  235 (251)
T PRK14244        199 FTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQEI  235 (251)
T ss_pred             CeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHHH
Confidence            99999999975 67889999999999999999988765

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=8.8e-21  Score=182.37  Aligned_cols=116  Identities=24%  Similarity=0.352  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +..++++++++.+||.+...... +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus       121 ~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~  198 (253)
T PRK14267        121 ELDERVEWALKKAALWDEVKDRL-NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-E  198 (253)
T ss_pred             HHHHHHHHHHHHcCCccchhhhh-ccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-C
Confidence            34457888999999853211111 234567999999999999999999999999999999999999999999999976 6


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +|+|+++|++. ++.+++|++++|++|+++..|++++..
T Consensus       199 ~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~  236 (253)
T PRK14267        199 YTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGPTRKVF  236 (253)
T ss_pred             CEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence            89999999975 688899999999999999999987653

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.85  E-value=8.7e-21  Score=200.68  Aligned_cols=117  Identities=28%  Similarity=0.340  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-   82 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-   82 (437)
                      ++.+++++++++.+||++..+..+     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ 
T Consensus       143 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~  217 (520)
T TIGR03269       143 KEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA  217 (520)
T ss_pred             HHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            445678999999999987776655     46999999999999999999999999999999999999999999999976 


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHH
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFF  126 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f  126 (437)
                      .|.|||+++|++. .+.+++|++++|++|++++.|++++..+.+
T Consensus       218 ~g~tviivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  260 (520)
T TIGR03269       218 SGISMVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAVF  260 (520)
T ss_pred             cCcEEEEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence            5899999999975 577899999999999999999988765543

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.1e-20  Score=182.58  Aligned_cols=117  Identities=29%  Similarity=0.410  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~   83 (437)
                      +..+++.++++.+++.+..+... +..+..||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++ .
T Consensus       122 ~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~  200 (261)
T PRK14258        122 EIDDIVESALKDADLWDEIKHKI-HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRS  200 (261)
T ss_pred             HHHHHHHHHHHHcCCcchhhhHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhC
Confidence            34567889999999854322111 234567999999999999999999999999999999999999999999999976 5


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeC-----CeEEEeeChhHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSN-----GETIYFGDAKMAV  123 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~-----G~~v~~G~~~~~~  123 (437)
                      |+|+|+++|++. ++.+++|++++|++     |++++.|+++++.
T Consensus       201 ~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~  244 (261)
T PRK14258        201 ELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF  244 (261)
T ss_pred             CCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence            899999999974 78899999999999     9999999998763

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.85  E-value=6.3e-21  Score=200.33  Aligned_cols=110  Identities=20%  Similarity=0.308  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      +++++++++.+||.+..+..++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|
T Consensus       113 ~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~t  187 (490)
T PRK10938        113 PARCEQLAQQFGITALLDRRFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGIT  187 (490)
T ss_pred             HHHHHHHHHHcCCHhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCe
Confidence            4678899999999887777665     69999999999999999999999999999999999999999999999888999


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      ||+++|++. .+.+.+|++++|++|+++..|++++.
T Consensus       188 vii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~  222 (490)
T PRK10938        188 LVLVLNRFD-EIPDFVQFAGVLADCTLAETGEREEI  222 (490)
T ss_pred             EEEEeCCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            999999974 68899999999999999999998765

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.85  E-value=8e-21  Score=178.87  Aligned_cols=103  Identities=23%  Similarity=0.385  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~   83 (437)
                      +..++++++++.+||.+..+..+     +.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++ .
T Consensus       117 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~  191 (221)
T TIGR02211       117 EAKERAYEMLEKVGLEHRINHRP-----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL  191 (221)
T ss_pred             HHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence            34567889999999987776655     46999999999999999999999999999999999999999999999987 4


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETI  114 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v  114 (437)
                      |.|+|+++|++. .+. .+|++++|++|+++
T Consensus       192 ~~tii~~tH~~~-~~~-~~d~v~~l~~G~i~  220 (221)
T TIGR02211       192 NTSFLVVTHDLE-LAK-KLDRVLEMKDGQLF  220 (221)
T ss_pred             CCEEEEEeCCHH-HHh-hcCEEEEEeCCEec
Confidence            899999999985 454 47999999999875

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=9.6e-21  Score=180.89  Aligned_cols=110  Identities=27%  Similarity=0.330  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 013741            7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DG   84 (437)
Q Consensus         7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g   84 (437)
                      .++++++++.+||. +..++.     ++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++ .|
T Consensus       108 ~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g  182 (241)
T PRK14250        108 NVDVEYYLSIVGLNKEYATRD-----VKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMN  182 (241)
T ss_pred             HHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC
Confidence            34678899999996 455543     457999999999999999999999999999999999999999999999987 48


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      .|||+++|++. ++.+++|++++|++|+++..|++++.
T Consensus       183 ~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (241)
T PRK14250        183 LTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYDF  219 (241)
T ss_pred             CEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence            99999999975 68889999999999999999988865

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.85  E-value=6.8e-21  Score=200.61  Aligned_cols=112  Identities=20%  Similarity=0.374  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +.+++++++++.+||.+..|..++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       117 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~  191 (501)
T PRK10762        117 KMYAEADKLLARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQG  191 (501)
T ss_pred             HHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCC
Confidence            345678999999999987776665     599999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      .|||+++|++. ++.+++|++++|++|+++..|++++.
T Consensus       192 ~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (501)
T PRK10762        192 RGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVADL  228 (501)
T ss_pred             CEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCcC
Confidence            99999999974 68899999999999999999987654

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.85  E-value=1e-20  Score=183.48  Aligned_cols=113  Identities=19%  Similarity=0.284  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      +..++++++++.+|+. +..++.+     +.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|++++++
T Consensus       126 ~~~~~~~~~l~~~gl~~~~~~~~~-----~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~  200 (268)
T PRK10419        126 ERLARASEMLRAVDLDDSVLDKRP-----PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ  200 (268)
T ss_pred             HHHHHHHHHHHHcCCChhHhhCCC-----ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH
Confidence            3445789999999996 4555544     569999999999999999999999999999999999999999999999874


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       |.|+|+++|++. ++.+++|++++|++|++++.|++++..
T Consensus       201 ~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~  240 (268)
T PRK10419        201 FGTACLFITHDLR-LVERFCQRVMVMDNGQIVETQPVGDKL  240 (268)
T ss_pred             cCcEEEEEECCHH-HHHHhCCEEEEEECCEEeeeCChhhcc
Confidence             899999999974 688899999999999999999987653

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=6.5e-21  Score=200.99  Aligned_cols=112  Identities=17%  Similarity=0.303  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +..++++++++.+||.+..+..++     .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       119 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~  193 (506)
T PRK13549        119 AMYLRAQKLLAQLKLDINPATPVG-----NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHG  193 (506)
T ss_pred             HHHHHHHHHHHHcCCCCCcccchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence            445678999999999877777664     699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      .|||+++|++. ++.+.+|++++|++|++++.|++++.
T Consensus       194 ~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~  230 (506)
T PRK13549        194 IACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAGM  230 (506)
T ss_pred             CEEEEEeCcHH-HHHHhcCEEEEEECCEEeeecccccC
Confidence            99999999974 68889999999999999999988654

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.85  E-value=1e-20  Score=183.86  Aligned_cols=111  Identities=24%  Similarity=0.354  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHH
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEIL---------TQPTVLLLDEPTSGLDSASAFFVIQV   76 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~---------~~p~ll~lDEPtsgLD~~~~~~i~~~   76 (437)
                      ..++++++++.+||.+..++.+     ..|||||||||+||++|+         .+|++|+|||||+|||+.++..+.+.
T Consensus       122 ~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~  196 (272)
T PRK13547        122 DGEIAWQALALAGATALVGRDV-----TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDT  196 (272)
T ss_pred             HHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHH
Confidence            4457889999999987666554     469999999999999999         59999999999999999999999999


Q ss_pred             HHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           77 LKCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        77 l~~l~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |++++++ |.|+|+++|++. ++.+++|++++|++|+++..|+++++
T Consensus       197 l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  242 (272)
T PRK13547        197 VRRLARDWNLGVLAIVHDPN-LAARHADRIAMLADGAIVAHGAPADV  242 (272)
T ss_pred             HHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence            9999875 899999999975 68889999999999999999998765

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.2e-20  Score=182.17  Aligned_cols=116  Identities=24%  Similarity=0.358  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..++++++++.+|+.+...... +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ 
T Consensus       126 ~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-  203 (259)
T PRK14274        126 KKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-  203 (259)
T ss_pred             HHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-
Confidence            344567888999999854211111 234567999999999999999999999999999999999999999999999975 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      ++|+|+++|++. ++.+.+|++++|++|+++..|++++.
T Consensus       204 ~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  241 (259)
T PRK14274        204 KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECNDTNKM  241 (259)
T ss_pred             CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence            789999999975 68889999999999999999998865

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=7.9e-21  Score=200.35  Aligned_cols=112  Identities=20%  Similarity=0.331  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      +.+++++++++.+||. +..|..++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       380 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~  454 (506)
T PRK13549        380 AELKTILESIQRLKVKTASPELAIA-----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ  454 (506)
T ss_pred             HHHHHHHHHHHhcCccCCCcccccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC
Confidence            3446789999999996 56666654     69999999999999999999999999999999999999999999999988


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |.|||+++|++. ++.++||++++|++|+++..|+++++
T Consensus       455 g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~  492 (506)
T PRK13549        455 GVAIIVISSELP-EVLGLSDRVLVMHEGKLKGDLINHNL  492 (506)
T ss_pred             CCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEeccccC
Confidence            999999999974 78899999999999999999987654

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.4e-20  Score=182.55  Aligned_cols=115  Identities=25%  Similarity=0.386  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +..++++++++.+||.+...... +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +
T Consensus       135 ~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~  212 (267)
T PRK14235        135 ELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-N  212 (267)
T ss_pred             HHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-C
Confidence            34567889999999964211111 223467999999999999999999999999999999999999999999999976 6


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      .|||+++|++. .+.+++|++++|++|+++..|+.++.
T Consensus       213 ~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~  249 (267)
T PRK14235        213 YTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGDTEKM  249 (267)
T ss_pred             CeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            89999999975 67889999999999999999988765

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.4e-20  Score=180.21  Aligned_cols=115  Identities=28%  Similarity=0.377  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      .+++++++++.+||.+...+.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |.
T Consensus       115 ~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~  192 (246)
T PRK14269        115 EEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NL  192 (246)
T ss_pred             HHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CC
Confidence            4456889999999953221111 224567999999999999999999999999999999999999999999999875 89


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |+|+++|++. ++.+.+|++++|++|+++..|+.++..
T Consensus       193 tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  229 (246)
T PRK14269        193 SMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEFF  229 (246)
T ss_pred             EEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHHH
Confidence            9999999974 688899999999999999999987653

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.85  E-value=7.6e-21  Score=186.10  Aligned_cols=118  Identities=23%  Similarity=0.394  Sum_probs=108.4

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      .|++|++++|.+.|++.||...    ..+.++.+.|||||||++||++++.+|++++||||||.||-.-+.+++++|++|
T Consensus       397 ls~~eR~~rv~~aL~EVGLDp~----~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~L  472 (534)
T COG4172         397 LSAAERDQRVIEALEEVGLDPA----TRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL  472 (534)
T ss_pred             CCHHHHHHHHHHHHHHcCCChh----HhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHH
Confidence            3678999999999999999753    345688899999999999999999999999999999999999999999999999


Q ss_pred             Hh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      .+ .|.+-+.++|+. .-+-.+||+|++|.+|++|..|+.+++.
T Consensus       473 Q~k~~LsYLFISHDL-~VvrAl~~~viVm~~GkiVE~G~~~~if  515 (534)
T COG4172         473 QQKHGLSYLFISHDL-AVVRALCHRVIVMRDGKIVEQGPTEAVF  515 (534)
T ss_pred             HHHhCCeEEEEeccH-HHHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence            87 688999999996 4688999999999999999999999774

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=1.5e-20  Score=180.55  Aligned_cols=112  Identities=26%  Similarity=0.341  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            5 EINDIVEETIIKMGLQA----CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~----~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +.+++++++++.+||.+    ..+.     .++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++
T Consensus       119 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~  193 (251)
T PRK14270        119 ELDKIVEWALKKAALWDEVKDDLKK-----SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL  193 (251)
T ss_pred             HHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            44567888999998842    2333     45679999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ++ ++|+|+++|++. ++.+++|++++|++|++++.|+++++.
T Consensus       194 ~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~  234 (251)
T PRK14270        194 KK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFNKTEKIF  234 (251)
T ss_pred             Hh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence            76 589999999974 788999999999999999999988763

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.85  E-value=9e-21  Score=200.02  Aligned_cols=111  Identities=17%  Similarity=0.282  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      .+++++++++.+||.+..+..++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.
T Consensus       117 ~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~  191 (510)
T PRK15439        117 SMQKMKQLLAALGCQLDLDSSAG-----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGV  191 (510)
T ss_pred             HHHHHHHHHHHcCCCccccCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence            45678999999999887777664     6999999999999999999999999999999999999999999999988899


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |||+++|++. ++.+++|++++|++|++++.|++++.
T Consensus       192 tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (510)
T PRK15439        192 GIVFISHKLP-EIRQLADRISVMRDGTIALSGKTADL  227 (510)
T ss_pred             EEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHHc
Confidence            9999999974 68889999999999999999998764

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.84  E-value=2.6e-20  Score=180.17  Aligned_cols=115  Identities=18%  Similarity=0.240  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..+.++++++.++|.+..+..+     +.||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       118 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~  192 (264)
T PRK13546        118 KEIKAMTPKIIEFSELGEFIYQPV-----KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ  192 (264)
T ss_pred             HHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC
Confidence            344456778899999987776655     469999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      |.|+|+++|++. ++.+.+|++++|++|+++..|+.++..+
T Consensus       193 g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~~  232 (264)
T PRK13546        193 NKTIFFVSHNLG-QVRQFCTKIAWIEGGKLKDYGELDDVLP  232 (264)
T ss_pred             CCEEEEEcCCHH-HHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence            999999999964 6788999999999999999999887654

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.84  E-value=7.9e-21  Score=175.21  Aligned_cols=121  Identities=25%  Similarity=0.469  Sum_probs=113.2

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      |+++|.+++.+.+|+.+++......+|     +.||.|++|++.+-.+++++|++++||||+|||||.+...+-+.++++
T Consensus       102 m~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~l  176 (300)
T COG4152         102 MPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFEL  176 (300)
T ss_pred             CcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHH
Confidence            578899999999999999988777666     579999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFA  127 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~  127 (437)
                      +++|.|||.++|.. ..+.++||++++|++|+.|.+|+.+++..-|.
T Consensus       177 k~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G  222 (300)
T COG4152         177 KEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG  222 (300)
T ss_pred             HhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence            99999999999996 57999999999999999999999999987554

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.84  E-value=1.4e-20  Score=178.20  Aligned_cols=105  Identities=22%  Similarity=0.299  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.+++++++++.+||.+..+..+     ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus       121 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  195 (228)
T PRK10584        121 RQSRNGAKALLEQLGLGKRLDHLP-----AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE  195 (228)
T ss_pred             HHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Confidence            344568899999999987776655     469999999999999999999999999999999999999999999999774


Q ss_pred             -CCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 013741           84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIY  115 (437)
Q Consensus        84 -g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~  115 (437)
                       |.|||+++|++. .+ +.+|++++|++|+++.
T Consensus       196 ~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~  226 (228)
T PRK10584        196 HGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE  226 (228)
T ss_pred             cCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence             899999999986 45 4599999999999864

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.84  E-value=4.4e-21  Score=189.54  Aligned_cols=114  Identities=27%  Similarity=0.406  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++++++|+++++.++|++.++.+     +..|||||+|||++||+|+.+|++|+||||.|.||..-+.++...|+++.+
T Consensus       110 ~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~  184 (352)
T COG3842         110 KAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR  184 (352)
T ss_pred             HHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHH
Confidence            456888999999999999877654     467999999999999999999999999999999999999999999999987


Q ss_pred             -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                       .|.|.|.+||+. .|...+.|||++|++|++...|+++++
T Consensus       185 ~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~ei  224 (352)
T COG3842         185 ELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEI  224 (352)
T ss_pred             hcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHH
Confidence             699999999996 589999999999999999999999987

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.2e-20  Score=203.42  Aligned_cols=114  Identities=19%  Similarity=0.242  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            4 DEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      ++.+++++++++.+||. +..++.+     +.|||||||||+||++|+.+|++|+|||||+|||..++.++.+.|+++++
T Consensus       437 ~~~~~~~~~~L~~~gL~~~~~~~~~-----~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~  511 (623)
T PRK10261        437 KAAAARVAWLLERVGLLPEHAWRYP-----HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQR  511 (623)
T ss_pred             HHHHHHHHHHHHHcCCCHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence            34557889999999995 4555544     57999999999999999999999999999999999999999999999987


Q ss_pred             c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + |.|||+++|++. .+.+++|++++|++|++++.|+++++.
T Consensus       512 ~~g~tvi~isHdl~-~v~~~~dri~vl~~G~iv~~g~~~~i~  552 (623)
T PRK10261        512 DFGIAYLFISHDMA-VVERISHRVAVMYLGQIVEIGPRRAVF  552 (623)
T ss_pred             hcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            5 899999999974 688999999999999999999988764

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.84  E-value=9.6e-21  Score=194.88  Aligned_cols=116  Identities=23%  Similarity=0.331  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      .++++++|+++++..||.+-    ..+.++.+||||||||++||++|+.+|+++++|||||.||...+.++.+.|+++.+
T Consensus       402 ~~~~~~rv~~ll~~VgL~~~----~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~  477 (539)
T COG1123         402 GAERRARVAELLELVGLPPE----FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQE  477 (539)
T ss_pred             hHHHHHHHHHHHHHcCCCHH----HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHH
Confidence            35677899999999999842    44567889999999999999999999999999999999999999999999999998


Q ss_pred             -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       .|.|.+.++|+. ..+.++||||++|++|++|..||.+++.
T Consensus       478 e~g~t~lfISHDl-~vV~~i~drv~vm~~G~iVE~G~~~~v~  518 (539)
T COG1123         478 ELGLTYLFISHDL-AVVRYIADRVAVMYDGRIVEEGPTEKVF  518 (539)
T ss_pred             HhCCEEEEEeCCH-HHHHhhCceEEEEECCeEEEeCCHHHHh
Confidence             599999999996 5789999999999999999999888764

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2e-20  Score=181.38  Aligned_cols=115  Identities=21%  Similarity=0.317  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +.+++++++++.++|.+..++.. +..++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus       135 ~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~  212 (267)
T PRK14237        135 VLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-N  212 (267)
T ss_pred             HHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C
Confidence            44567888999999864322222 235568999999999999999999999999999999999999999999999964 7


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      .|+|+++|++. ++.+++|++++|++|+++..|++++.
T Consensus       213 ~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  249 (267)
T PRK14237        213 YTIIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRNI  249 (267)
T ss_pred             CEEEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence            89999999975 68899999999999999999998865

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2e-20  Score=179.77  Aligned_cols=114  Identities=23%  Similarity=0.325  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      .+++++++++.+++.+...+.. +..++.||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++++ ++
T Consensus       121 ~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~  198 (252)
T PRK14239        121 LDEAVEKSLKGASIWDEVKDRL-HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DY  198 (252)
T ss_pred             HHHHHHHHHHHcCCchhHHHHH-hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CC
Confidence            3456788899998753211111 234567999999999999999999999999999999999999999999999975 68


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |||+++|++. ++.+.+|++++|++|++++.|+.++.
T Consensus       199 tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  234 (252)
T PRK14239        199 TMLLVTRSMQ-QASRISDRTGFFLDGDLIEYNDTKQM  234 (252)
T ss_pred             eEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999975 68889999999999999999998865

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2e-20  Score=180.53  Aligned_cols=113  Identities=23%  Similarity=0.386  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            4 DEINDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~----~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      ++.+++++++++.+||.    +..++     .++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus       119 ~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  193 (258)
T PRK14241        119 KDLDELVEKSLRGANLWNEVKDRLDK-----PGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE  193 (258)
T ss_pred             HHHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            34456788899999984    23333     3457999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEe------CCeEEEeeChhHHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLS------NGETIYFGDAKMAV  123 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~------~G~~v~~G~~~~~~  123 (437)
                      +++ ++|||+++|++. ++.+++|++++|+      +|++++.|++++..
T Consensus       194 ~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~  241 (258)
T PRK14241        194 LKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF  241 (258)
T ss_pred             Hhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence            965 689999999974 6888999999997      79999999987653

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2.2e-20  Score=179.51  Aligned_cols=115  Identities=23%  Similarity=0.376  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +.++++++.++.+|+.+...... +..++.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++ +
T Consensus       120 ~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~  197 (252)
T PRK14256        120 EADEIVESSLKRVALWDEVKDRL-KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-K  197 (252)
T ss_pred             HHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-C
Confidence            34567889999999864211111 124567999999999999999999999999999999999999999999999976 5


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      .|||+++|++. ++.+++|++++|++|+++..|+.++.
T Consensus       198 ~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  234 (252)
T PRK14256        198 YTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGETKKI  234 (252)
T ss_pred             CcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            89999999974 68899999999999999999998765

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.84  E-value=1.3e-20  Score=199.63  Aligned_cols=114  Identities=22%  Similarity=0.373  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            4 DEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      ++.+++++++++.+||. +..+..+     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       399 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~  473 (529)
T PRK15134        399 AQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQ  473 (529)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHH
Confidence            34456789999999997 4566655     46999999999999999999999999999999999999999999999987


Q ss_pred             c-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + |.|||+++|++. ++.+++|++++|++|+++..|+++++.
T Consensus       474 ~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~  514 (529)
T PRK15134        474 KHQLAYLFISHDLH-VVRALCHQVIVLRQGEVVEQGDCERVF  514 (529)
T ss_pred             hhCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence            5 899999999974 688899999999999999999887663

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.5e-20  Score=197.62  Aligned_cols=112  Identities=16%  Similarity=0.267  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +..++++++++.+|+.+..++.++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       110 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g  184 (491)
T PRK10982        110 KMYRDTKAIFDELDIDIDPRAKVA-----TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERG  184 (491)
T ss_pred             HHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence            345678999999999877776654     699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      .|||+++|++. ++.++||++++|++|+++..|++++.
T Consensus       185 ~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  221 (491)
T PRK10982        185 CGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL  221 (491)
T ss_pred             CEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence            99999999974 68889999999999999999987654

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.84  E-value=1.2e-20  Score=178.80  Aligned_cols=109  Identities=21%  Similarity=0.319  Sum_probs=96.0

Q ss_pred             HHHHHHHHHcC-CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CC
Q 013741            8 DIVEETIIKMG-LQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GR   85 (437)
Q Consensus         8 ~~v~~~l~~l~-L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~   85 (437)
                      +.++++++.++ +.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+
T Consensus       109 ~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~  183 (230)
T TIGR03410       109 KIPDEIYELFPVLKEMLGRRG-----GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM  183 (230)
T ss_pred             HHHHHHHHHHHhHHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCc
Confidence            34577788776 565555544     569999999999999999999999999999999999999999999999874 89


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |+|+++|++. ++.+++|++++|++|+++..|+.+++
T Consensus       184 tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~~  219 (230)
T TIGR03410       184 AILLVEQYLD-FARELADRYYVMERGRVVASGAGDEL  219 (230)
T ss_pred             EEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHc
Confidence            9999999975 68889999999999999999998765

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2.2e-20  Score=181.17  Aligned_cols=113  Identities=24%  Similarity=0.369  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      ++.+++.++.+++.+..... -+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|
T Consensus       138 ~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~t  215 (268)
T PRK14248        138 DEIVEESLTKAALWDEVKDR-LHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYS  215 (268)
T ss_pred             HHHHHHHHHHcCCCcchHHH-HhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCE
Confidence            45677888888885211111 1224457999999999999999999999999999999999999999999999965 689


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      ||+++|++. ++.+++|++++|++|++++.|+.++.
T Consensus       216 iii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~  250 (268)
T PRK14248        216 IIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQTEQI  250 (268)
T ss_pred             EEEEEeCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999974 68889999999999999999998765

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.84  E-value=1.3e-20  Score=198.48  Aligned_cols=112  Identities=22%  Similarity=0.369  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      +.+++++++++.+||. +..++.++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       370 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~  444 (501)
T PRK10762        370 DEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE  444 (501)
T ss_pred             HHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC
Confidence            3456789999999995 56666654     69999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |.|||+++|++. ++.+++|++++|++|+++..|+++++
T Consensus       445 g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~  482 (501)
T PRK10762        445 GLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA  482 (501)
T ss_pred             CCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence            999999999974 78899999999999999999987754

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.84  E-value=1.8e-20  Score=162.64  Aligned_cols=114  Identities=25%  Similarity=0.393  Sum_probs=104.6

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +++++.+.+..++++.|.|.+.+|.     ++-.|||||+|||+|||+|+.+|++|++||||+.||+.-..++++++|+|
T Consensus       113 l~~~qa~~~a~ellkrlrl~~~adr-----~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel  187 (242)
T COG4161         113 LSKDQALARAEKLLKRLRLKPYADR-----YPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL  187 (242)
T ss_pred             CCHHHHHHHHHHHHHHhcccccccc-----CceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHH
Confidence            4677888899999999999998875     45579999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChh
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK  120 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~  120 (437)
                      +..|.|-++++|... ..-+...+|+.|.+|+++..|+.+
T Consensus       188 ~~tgitqvivthev~-va~k~as~vvyme~g~ive~g~a~  226 (242)
T COG4161         188 AETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDAS  226 (242)
T ss_pred             HhcCceEEEEEeehh-HHHhhhhheEeeecCeeEeecchh
Confidence            999999999999964 566778999999999999999865

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2.5e-20  Score=178.91  Aligned_cols=115  Identities=28%  Similarity=0.404  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      .++.+++.++.+|+.+..+.. .+..++.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++ ++
T Consensus       119 ~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~  196 (250)
T PRK14262        119 LDRIVEESLKKAALWDEVKSE-LNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NY  196 (250)
T ss_pred             HHHHHHHHHHHcCCCchhHHH-HhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-Cc
Confidence            445678889999986422111 2334568999999999999999999999999999999999999999999999975 68


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |+|+++|++. ++.+++|++++|++|+++..|++++..
T Consensus       197 tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14262        197 TIVIVTHNIG-QAIRIADYIAFMYRGELIEYGPTREIV  233 (250)
T ss_pred             EEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence            9999999975 688899999999999999999988664

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.4e-20  Score=198.22  Aligned_cols=110  Identities=19%  Similarity=0.269  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      +++++++++.+||. +..++.++     .|||||||||+||++|+.+|++|+|||||+|||..++.++++.|++++++|.
T Consensus       373 ~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~  447 (501)
T PRK11288        373 AENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGV  447 (501)
T ss_pred             HHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCC
Confidence            45788999999994 66777665     5999999999999999999999999999999999999999999999998899


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |||+++|++ .++.+++|++++|++|++++.|+++++
T Consensus       448 tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~~~~~~  483 (501)
T PRK11288        448 AVLFVSSDL-PEVLGVADRIVVMREGRIAGELAREQA  483 (501)
T ss_pred             EEEEECCCH-HHHHhhCCEEEEEECCEEEEEEccccC
Confidence            999999997 478899999999999999999987643

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=3.1e-20  Score=178.28  Aligned_cols=115  Identities=27%  Similarity=0.434  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +.+++++++++.+++.+...... +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus       118 ~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~  195 (250)
T PRK14240        118 KLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-D  195 (250)
T ss_pred             HHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C
Confidence            44567888899988753211111 224467999999999999999999999999999999999999999999999964 7


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      +|+|+++|++. .+.+.+|++++|++|+++..|+.++.
T Consensus       196 ~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~  232 (250)
T PRK14240        196 YTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGDTVDL  232 (250)
T ss_pred             CeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            89999999974 68889999999999999999988765

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=2.9e-20  Score=178.38  Aligned_cols=114  Identities=24%  Similarity=0.393  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      .++++++.++.+|+.+...... +..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++
T Consensus       118 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~  195 (249)
T PRK14253        118 LDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NY  195 (249)
T ss_pred             HHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CC
Confidence            3457788888888754221111 224467999999999999999999999999999999999999999999999976 58


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |||+++|++. ++.+.+|++++|++|+++..|+.++.
T Consensus       196 tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  231 (249)
T PRK14253        196 TIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDTQVI  231 (249)
T ss_pred             eEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999974 78899999999999999999987755

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.84  E-value=1.9e-20  Score=218.37  Aligned_cols=119  Identities=28%  Similarity=0.443  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++.+++++++++.+||.+.+|++++     .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus      2044 ~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~ 2118 (2272)
T TIGR01257      2044 AEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR 2118 (2272)
T ss_pred             HHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence            34556788999999999998888775     5999999999999999999999999999999999999999999999988


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHH
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFA  127 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~  127 (437)
                      +|+|||+|+|++ .++..+|||+++|.+|+++..|+++++.+.|.
T Consensus      2119 ~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257      2119 EGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred             CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence            899999999996 58999999999999999999999999987664

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.84  E-value=1.5e-20  Score=198.37  Aligned_cols=109  Identities=21%  Similarity=0.310  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      +++++++++.+||+ +..++.++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.
T Consensus       380 ~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~  454 (510)
T PRK15439        380 NAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNV  454 (510)
T ss_pred             HHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCC
Confidence            45688999999997 66776664     6999999999999999999999999999999999999999999999998899


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM  121 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~  121 (437)
                      |||+++|++. ++.++||++++|++|+++..|.+++
T Consensus       455 tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~  489 (510)
T PRK15439        455 AVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAA  489 (510)
T ss_pred             EEEEECCCHH-HHHHhCCEEEEEECCEEEEEEcccc
Confidence            9999999974 7889999999999999999987764

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.84  E-value=2.5e-20  Score=197.21  Aligned_cols=112  Identities=19%  Similarity=0.333  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHcCCcc-----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            6 INDIVEETIIKMGLQA-----CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~-----~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      .+++++++++.+||.+     ..++.     +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus       399 ~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l  473 (520)
T TIGR03269       399 ARMKAVITLKMVGFDEEKAEEILDKY-----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKA  473 (520)
T ss_pred             HHHHHHHHHHhCCCCCccchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            4467889999999975     34444     4579999999999999999999999999999999999999999999999


Q ss_pred             Hhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           81 ALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        81 ~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +++ |.|||+++|++. .+.+++|++++|++|+++..|+++++.
T Consensus       474 ~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  516 (520)
T TIGR03269       474 REEMEQTFIIVSHDMD-FVLDVCDRAALMRDGKIVKIGDPEEIV  516 (520)
T ss_pred             HHHcCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            874 899999999975 688999999999999999999987654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.9e-20  Score=197.59  Aligned_cols=107  Identities=20%  Similarity=0.356  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      +++++++++.+||. +..++.++     .|||||||||.||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.
T Consensus       386 ~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~  460 (510)
T PRK09700        386 QRTAENQRELLALKCHSVNQNIT-----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGK  460 (510)
T ss_pred             HHHHHHHHHhcCCCCCCccCccc-----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCC
Confidence            35688999999996 66777665     6999999999999999999999999999999999999999999999988899


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeCh
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA  119 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~  119 (437)
                      |||+++|++. ++.+++|++++|++|+++..++.
T Consensus       461 tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~  493 (510)
T PRK09700        461 VILMVSSELP-EIITVCDRIAVFCEGRLTQILTN  493 (510)
T ss_pred             EEEEEcCCHH-HHHhhCCEEEEEECCEEEEEecC
Confidence            9999999974 68899999999999999988866

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.84  E-value=1.9e-20  Score=170.94  Aligned_cols=102  Identities=30%  Similarity=0.514  Sum_probs=91.2

Q ss_pred             HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEE
Q 013741           10 VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIVV   88 (437)
Q Consensus        10 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi   88 (437)
                      +.++++.+||.+..++.+     +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++ |.|+|
T Consensus        78 ~~q~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tii  152 (180)
T cd03214          78 VPQALELLGLAHLADRPF-----NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVV  152 (180)
T ss_pred             HHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence            444788999987666544     569999999999999999999999999999999999999999999999876 89999


Q ss_pred             EEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741           89 CSIHQPSSHLFYLFDDLLLLSNGETIYFG  117 (437)
Q Consensus        89 ~t~hqp~~~i~~~fd~v~~L~~G~~v~~G  117 (437)
                      +++|++. ++.+++|++++|++|++++.|
T Consensus       153 i~sh~~~-~~~~~~d~~~~l~~g~i~~~~  180 (180)
T cd03214         153 MVLHDLN-LAARYADRVILLKDGRIVAQG  180 (180)
T ss_pred             EEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence            9999975 677899999999999998754

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.6e-20  Score=202.36  Aligned_cols=114  Identities=20%  Similarity=0.322  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHcCCcc---cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            3 NDEINDIVEETIIKMGLQA---CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~---~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      +++.+++++++++.+||.+   ..+.     ++..|||||||||.||++|+.+|++|+|||||+|||+.++.++.+.|++
T Consensus       139 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~  213 (623)
T PRK10261        139 REEAMVEAKRMLDQVRIPEAQTILSR-----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKV  213 (623)
T ss_pred             HHHHHHHHHHHHHHCCCCChhhHHhC-----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHH
Confidence            3455678999999999953   3444     4457999999999999999999999999999999999999999999999


Q ss_pred             HHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           80 IALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        80 l~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      ++++ |.|||+++|++ ..+.+++||+++|++|+++..|+++++
T Consensus       214 l~~~~g~tvi~itHdl-~~~~~~adri~vl~~G~i~~~g~~~~~  256 (623)
T PRK10261        214 LQKEMSMGVIFITHDM-GVVAEIADRVLVMYQGEAVETGSVEQI  256 (623)
T ss_pred             HHHhcCCEEEEEcCCH-HHHHHhCCEEEEeeCCeecccCCHHHh
Confidence            9874 89999999996 468899999999999999999998765

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.9e-20  Score=177.72  Aligned_cols=111  Identities=23%  Similarity=0.347  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            6 INDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~----~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ..+++++.++.+++.    +..++     .++.||||||||++||++|+.+|++++|||||+|||..++..+.+.|++++
T Consensus       121 ~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~  195 (252)
T PRK14272        121 LMEVAERSLRGAALWDEVKDRLKT-----PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK  195 (252)
T ss_pred             HHHHHHHHHHHcCcchhhhhhhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence            345667777777764    23333     346799999999999999999999999999999999999999999999997


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + +.|+|+++|++. ++.+.+|++++|++|++++.|++++..
T Consensus       196 ~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~  235 (252)
T PRK14272        196 K-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGPTDQLF  235 (252)
T ss_pred             c-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            5 699999999975 688899999999999999999988663

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.5e-20  Score=181.49  Aligned_cols=111  Identities=22%  Similarity=0.351  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            6 INDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~----~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      .+++++++++.+|+.    +..++     .++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       155 ~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~  229 (286)
T PRK14275        155 LEEIVEKSLRKAALWDEVSDRLDK-----NALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR  229 (286)
T ss_pred             HHHHHHHHHHHhCCccchhhHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence            345677888888874    33333     446799999999999999999999999999999999999999999999987


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + ++|||+++|++. ++.+++|++++|++|+++..|+.++..
T Consensus       230 ~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g~~~~~~  269 (286)
T PRK14275        230 G-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHAPTAQLF  269 (286)
T ss_pred             c-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            6 589999999975 678899999999999999999987653

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.83  E-value=3.8e-20  Score=179.91  Aligned_cols=114  Identities=25%  Similarity=0.385  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      .+++++++++.+++.+...+.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.
T Consensus       141 ~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~  218 (272)
T PRK14236        141 LDEAVERSLRGAALWDEVKDRL-HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KY  218 (272)
T ss_pred             HHHHHHHHHHHcCCChhHHHHh-hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CC
Confidence            3456888999999864211111 234567999999999999999999999999999999999999999999999976 68


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |+|+++|++. ++.+.+|++++|++|+++..|+.++.
T Consensus       219 tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~  254 (272)
T PRK14236        219 TIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYGDTDTL  254 (272)
T ss_pred             eEEEEeCCHH-HHHhhCCEEEEEECCEEEecCCHHHH
Confidence            9999999974 67889999999999999999988765

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=4.3e-20  Score=178.52  Aligned_cols=115  Identities=24%  Similarity=0.318  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      ..++++++++.++|.+..+... +...+.||||||||++||++|+.+|++|+|||||+|||+.++.++.+.|+++++ ++
T Consensus       122 ~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~  199 (261)
T PRK14263        122 LGDRVKHALQGAALWDEVKDKL-KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DY  199 (261)
T ss_pred             HHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CC
Confidence            3467889999999865433222 235568999999999999999999999999999999999999999999999964 78


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEe--------CCeEEEeeChhHHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLS--------NGETIYFGDAKMAV  123 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~--------~G~~v~~G~~~~~~  123 (437)
                      |+|+++|++. ++.+++|++++|+        +|+++..|+.++..
T Consensus       200 tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~  244 (261)
T PRK14263        200 TIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF  244 (261)
T ss_pred             eEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence            9999999975 6889999999996        89999999988653

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=4.1e-20  Score=178.45  Aligned_cols=115  Identities=25%  Similarity=0.364  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +..++++++++.+|+.+..... -+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus       122 ~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~  199 (259)
T PRK14260        122 DLDEIVESALKGAALWQEVKDK-LNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-E  199 (259)
T ss_pred             HHHHHHHHHHHHcCCcchhhhH-hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C
Confidence            3445788899999884211111 1234567999999999999999999999999999999999999999999999976 5


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEe-----CCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLS-----NGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~-----~G~~v~~G~~~~~  122 (437)
                      +|+|+++|++. ++.+.+|++++|+     +|+++..|++++.
T Consensus       200 ~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~  241 (259)
T PRK14260        200 LTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTTQI  241 (259)
T ss_pred             CEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence            89999999975 7889999999998     4999999999876

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=4.7e-20  Score=179.67  Aligned_cols=117  Identities=21%  Similarity=0.331  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..+++++.++.+||.+..++.. +..++.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++ 
T Consensus       134 ~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-  211 (276)
T PRK14271        134 KEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-  211 (276)
T ss_pred             HHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-
Confidence            344456778899999875432222 224567999999999999999999999999999999999999999999999976 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +.|||+++|++. ++.+++|++++|++|+++..|++++..
T Consensus       212 ~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~  250 (276)
T PRK14271        212 RLTVIIVTHNLA-QAARISDRAALFFDGRLVEEGPTEQLF  250 (276)
T ss_pred             CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            489999999974 688999999999999999999988663

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=4e-20  Score=184.19  Aligned_cols=113  Identities=23%  Similarity=0.314  Sum_probs=99.4

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      +.+++.++..+|.+..++.++ .....||||||||++||++++.+|+||+|||||+|||+.+...+.+.|+++++ ++|+
T Consensus       200 ~~~~~~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Ti  277 (329)
T PRK14257        200 KIVEKSLKSAALWDEVKDDLD-KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSI  277 (329)
T ss_pred             HHHHHHHHHcCCcchhhhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEE
Confidence            457888999988654444444 35678999999999999999999999999999999999999999999999876 6999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |+++|++. .+.+.+|++++|++|+++..|+++++.
T Consensus       278 i~iTH~l~-~i~~~~Driivl~~G~i~e~g~~~~l~  312 (329)
T PRK14257        278 IIVTHSMA-QAQRISDETVFFYQGWIEEAGETKTIF  312 (329)
T ss_pred             EEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            99999974 678889999999999999999999774

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.83  E-value=2.7e-20  Score=196.09  Aligned_cols=111  Identities=16%  Similarity=0.291  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHcCCcccc-cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            5 EINDIVEETIIKMGLQACA-ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      +.+++++++++.+||.+.. +..+     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       116 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~  190 (500)
T TIGR02633       116 AMYLRAKNLLRELQLDADNVTRPV-----GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH  190 (500)
T ss_pred             HHHHHHHHHHHHcCCCCCcccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Confidence            3456789999999997654 3434     469999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM  121 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~  121 (437)
                      |.|||+++|++. ++.+.+|++++|++|+++..|++++
T Consensus       191 g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~  227 (500)
T TIGR02633       191 GVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMST  227 (500)
T ss_pred             CCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCccc
Confidence            999999999974 6888999999999999999998764

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.83  E-value=3.5e-20  Score=176.42  Aligned_cols=90  Identities=26%  Similarity=0.469  Sum_probs=82.8

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741           31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~  110 (437)
                      .++.|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++. ++ ..+|++++|++
T Consensus       135 ~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~  211 (237)
T cd03252         135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEK  211 (237)
T ss_pred             CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEEC
Confidence            4568999999999999999999999999999999999999999999999974 899999999986 45 46999999999


Q ss_pred             CeEEEeeChhHHH
Q 013741          111 GETIYFGDAKMAV  123 (437)
Q Consensus       111 G~~v~~G~~~~~~  123 (437)
                      |++++.|++++..
T Consensus       212 G~i~~~~~~~~~~  224 (237)
T cd03252         212 GRIVEQGSHDELL  224 (237)
T ss_pred             CEEEEEcCHHHHH
Confidence            9999999987654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.83  E-value=3.8e-20  Score=177.83  Aligned_cols=108  Identities=19%  Similarity=0.337  Sum_probs=97.3

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRI   86 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~t   86 (437)
                      +++.++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|
T Consensus        99 ~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~t  173 (251)
T PRK09544         99 EDILPALKRVQAGHLIDAPM-----QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCA  173 (251)
T ss_pred             HHHHHHHHHcCChHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCE
Confidence            46788999999988777655     469999999999999999999999999999999999999999999999875 899


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      +|+++|++. ++.+.+|++++|+ |+++..|++++.
T Consensus       174 iiivsH~~~-~i~~~~d~i~~l~-~~i~~~g~~~~~  207 (251)
T PRK09544        174 VLMVSHDLH-LVMAKTDEVLCLN-HHICCSGTPEVV  207 (251)
T ss_pred             EEEEecCHH-HHHHhCCEEEEEC-CceEeeCCHHHH
Confidence            999999975 6888999999996 479999988765

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=5.5e-20  Score=176.64  Aligned_cols=113  Identities=20%  Similarity=0.304  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      ++++++.++.++|.+..... .+..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +|.|
T Consensus       121 ~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~t  198 (251)
T PRK14249        121 DEVVEKSLRQAALWDEVKDN-LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYT  198 (251)
T ss_pred             HHHHHHHHHHhCCchhhhhH-hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCE
Confidence            45677788888875321111 123456799999999999999999999999999999999999999999999995 5899


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      ||+++|++. ++.+++|++++|++|++++.|++++.
T Consensus       199 ilivsh~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  233 (251)
T PRK14249        199 IAIVTHNMQ-QAARASDWTGFLLTGDLVEYGRTGEI  233 (251)
T ss_pred             EEEEeCCHH-HHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence            999999974 68889999999999999999998765

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=5.6e-20  Score=176.49  Aligned_cols=115  Identities=26%  Similarity=0.332  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      .++++++.++.+||.+...... +..++.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++ +.
T Consensus       119 ~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~  196 (250)
T PRK14266        119 IEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DY  196 (250)
T ss_pred             HHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CC
Confidence            4567888999999854321112 234567999999999999999999999999999999999999999999999965 78


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |+|+++|++. ++...+|++++|++|++++.|++++..
T Consensus       197 tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14266        197 TIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGLTDQIF  233 (250)
T ss_pred             eEEEEECCHH-HHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence            9999999974 788999999999999999999988663

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=5.2e-20  Score=176.78  Aligned_cols=113  Identities=24%  Similarity=0.341  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      +++++++++.+++.+...... +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|
T Consensus       121 ~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~t  198 (251)
T PRK14251        121 DQRVEESLKQAAIWKETKDNL-DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYT  198 (251)
T ss_pred             HHHHHHHHHHcCCCcchHHHh-ccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCe
Confidence            457788999999853211111 224467999999999999999999999999999999999999999999999865 689


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      +|+++|++. ++.+.+|++++|++|+++..|+.++.
T Consensus       199 iiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  233 (251)
T PRK14251        199 FIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGPTEEM  233 (251)
T ss_pred             EEEEECCHH-HHHhhcCEEEEEECCEEEEeCCHHHH
Confidence            999999975 68888999999999999999998765

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=5.2e-20  Score=178.72  Aligned_cols=114  Identities=24%  Similarity=0.334  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      +++++++++.+++....++. -+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|
T Consensus       128 ~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~t  205 (269)
T PRK14259        128 DELVERSLRKAAVWDECKDK-LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFT  205 (269)
T ss_pred             HHHHHHHHHHhCCcchhhhh-hCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCE
Confidence            45677888888874211111 1234567999999999999999999999999999999999999999999999965 689


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeC-----------CeEEEeeChhHHH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSN-----------GETIYFGDAKMAV  123 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~-----------G~~v~~G~~~~~~  123 (437)
                      ||+++|++. ++.+++|++++|++           |++++.|+++++.
T Consensus       206 iiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~  252 (269)
T PRK14259        206 IVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIF  252 (269)
T ss_pred             EEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCHHHHH
Confidence            999999974 78899999999996           6789999998774

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.83  E-value=3.3e-20  Score=174.54  Aligned_cols=107  Identities=25%  Similarity=0.424  Sum_probs=92.1

Q ss_pred             HHHHHHHHHcCCccccccccc------CcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQACAETKIG------NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg------~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      +.+++.++.+++.+..+....      ...+..||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++
T Consensus       108 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  187 (220)
T cd03245         108 ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL  187 (220)
T ss_pred             HHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence            456778888999877665431      12346899999999999999999999999999999999999999999999997


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG  117 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G  117 (437)
                      ++ .|||+++|++. .+ +.+|++++|++|++++.|
T Consensus       188 ~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~  220 (220)
T cd03245         188 GD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG  220 (220)
T ss_pred             CC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence            65 89999999985 44 799999999999998764

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=5.8e-20  Score=176.69  Aligned_cols=114  Identities=21%  Similarity=0.305  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      .+++++++++.+++.+...+.. +..++.||||||||++||++++.+|++++|||||+|||..++..+.+.|+++++ ++
T Consensus       122 ~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~  199 (253)
T PRK14261        122 LDTIVEKSLKGAALWDEVKDRL-HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EY  199 (253)
T ss_pred             HHHHHHHHHHHhcCchhhHHHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-Cc
Confidence            3457888889888853211111 234567999999999999999999999999999999999999999999999976 58


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |+|+++|++. ++.+.+|++++|++|+++..|++++.
T Consensus       200 tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~  235 (253)
T PRK14261        200 TVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFDKTTQI  235 (253)
T ss_pred             eEEEEEcCHH-HHHhhCCEEEEEECCEEEEcCCHHHH
Confidence            9999999974 67789999999999999999998765

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=7.6e-20  Score=176.37  Aligned_cols=117  Identities=29%  Similarity=0.428  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.+++++++++.+++.+...... +..++.||||||||++||++++.+|++++|||||+|||..++..+.+.|+++++ 
T Consensus       124 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-  201 (257)
T PRK14246        124 REIKKIVEECLRKVGLWKEVYDRL-NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-  201 (257)
T ss_pred             HHHHHHHHHHHHHcCCCccchhhh-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-
Confidence            344567889999999964211111 224567999999999999999999999999999999999999999999999965 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +.|+|+++|++. .+.+++|++++|++|+++..|+.++..
T Consensus       202 ~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g~~~~~~  240 (257)
T PRK14246        202 EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWGSSNEIF  240 (257)
T ss_pred             CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            699999999974 678899999999999999999987654

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=8.2e-20  Score=175.52  Aligned_cols=114  Identities=23%  Similarity=0.308  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      ++++.+.++.+++....... -+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|
T Consensus       122 ~~~~~~~l~~~~l~~~i~~~-~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~t  199 (252)
T PRK14255        122 DEAVETSLKQAAIWDEVKDH-LHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYT  199 (252)
T ss_pred             HHHHHHHHHHcCCccchhhH-HhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCE
Confidence            34567778888764211111 1224467999999999999999999999999999999999999999999999976 489


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +|+++|++. ++.+.+|++++|++|+++..|++.+..
T Consensus       200 ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~  235 (252)
T PRK14255        200 IILVTHSMH-QASRISDKTAFFLTGNLIEFADTKQMF  235 (252)
T ss_pred             EEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999975 688899999999999999999888653

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.82  E-value=5.5e-20  Score=193.71  Aligned_cols=109  Identities=22%  Similarity=0.380  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            6 INDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      .+++++++++.+||.+ ..|+.++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       379 ~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g  453 (500)
T TIGR02633       379 ELQIIGSAIQRLKVKTASPFLPIG-----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG  453 (500)
T ss_pred             HHHHHHHHHHhcCccCCCccCccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCC
Confidence            3467899999999964 4566554     699999999999999999999999999999999999999999999999889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChh
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK  120 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~  120 (437)
                      .|||+++|++. ++.+++|++++|++|+++..++.+
T Consensus       454 ~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~~~~~  488 (500)
T TIGR02633       454 VAIIVVSSELA-EVLGLSDRVLVIGEGKLKGDFVNH  488 (500)
T ss_pred             CEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccc
Confidence            99999999974 788999999999999999887654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.82  E-value=5.6e-20  Score=172.13  Aligned_cols=121  Identities=25%  Similarity=0.378  Sum_probs=111.2

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      ++.++.+++.+...+.|+|+...+..+     |.||-|||.|+.+|.+|+++|+||||||||=|||-.++..+.+.|++.
T Consensus       128 Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~  202 (325)
T COG4586         128 IPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY  202 (325)
T ss_pred             CCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHH
Confidence            467788899999999999998777666     579999999999999999999999999999999999999999999999


Q ss_pred             Hh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHH
Q 013741           81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFA  127 (437)
Q Consensus        81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~  127 (437)
                      .+ .+.||+.|+|.. +++..+||||+++++|+++|.|+.++..+-|.
T Consensus       203 n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~  249 (325)
T COG4586         203 NEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG  249 (325)
T ss_pred             HHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence            87 688999999996 57999999999999999999999998877553

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.82  E-value=7.7e-20  Score=177.69  Aligned_cols=113  Identities=23%  Similarity=0.358  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      ++.+.+.++.+++.+-..... +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|
T Consensus       141 ~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~t  218 (271)
T PRK14238        141 DEIVEKSLRGAAIWDELKDRL-HDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYS  218 (271)
T ss_pred             HHHHHHHHHHcCCcchHHHHH-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCE
Confidence            345677777775432111111 234567999999999999999999999999999999999999999999999976 699


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      +|+++|++. ++.+++|++++|++|+++..|+.++.
T Consensus       219 iiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~  253 (271)
T PRK14238        219 IIIVTHNMQ-QAARISDKTAFFLNGYVNEYDDTDKI  253 (271)
T ss_pred             EEEEEcCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999974 67889999999999999999998765

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.82  E-value=6.5e-20  Score=193.15  Aligned_cols=109  Identities=21%  Similarity=0.387  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +.+++++++++.+||.+..+..+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       116 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g  190 (501)
T PRK11288        116 LLNYEAREQLEHLGVDIDPDTPL-----KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEG  190 (501)
T ss_pred             HHHHHHHHHHHHcCCCCCcCCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence            44568899999999987666555     4699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeCh
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA  119 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~  119 (437)
                      .|||+++|++. ++.+++|++++|++|+++..++.
T Consensus       191 ~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~  224 (501)
T PRK11288        191 RVILYVSHRME-EIFALCDAITVFKDGRYVATFDD  224 (501)
T ss_pred             CEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence            99999999975 68889999999999999887653

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=9.5e-20  Score=177.33  Aligned_cols=114  Identities=22%  Similarity=0.321  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      ++.+++.++.+++.+...... +..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|
T Consensus       135 ~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~t  212 (274)
T PRK14265        135 DELVEDSLRRAAIWEEVKDKL-KEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYT  212 (274)
T ss_pred             HHHHHHHHHHcccchhhHHHh-cCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCE
Confidence            345677788888742211111 234567999999999999999999999999999999999999999999999975 689


Q ss_pred             EEEEecCCchHHHhhcCeEEEEe---------CCeEEEeeChhHHH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLS---------NGETIYFGDAKMAV  123 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~---------~G~~v~~G~~~~~~  123 (437)
                      ||+++|++. ++.+++|++++|+         +|+++..|+++++.
T Consensus       213 iii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~  257 (274)
T PRK14265        213 IIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF  257 (274)
T ss_pred             EEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence            999999974 6889999999998         89999999998763

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.82  E-value=6e-20  Score=170.49  Aligned_cols=94  Identities=32%  Similarity=0.440  Sum_probs=84.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHh-hcCeEEEEeCC
Q 013741           33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFY-LFDDLLLLSNG  111 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~-~fd~v~~L~~G  111 (437)
                      +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+.+ .+|++++|++|
T Consensus       103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G  181 (200)
T cd03217         103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDG  181 (200)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECC
Confidence            579999999999999999999999999999999999999999999999888899999999985 5666 79999999999


Q ss_pred             eEEEeeChhHHHHHHHH
Q 013741          112 ETIYFGDAKMAVKFFAE  128 (437)
Q Consensus       112 ~~v~~G~~~~~~~~f~~  128 (437)
                      +++..|+.+ +.+++.+
T Consensus       182 ~i~~~~~~~-~~~~~~~  197 (200)
T cd03217         182 RIVKSGDKE-LALEIEK  197 (200)
T ss_pred             EEEEEccHH-HHhhhcc
Confidence            999999554 5554543

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.82  E-value=7.4e-20  Score=172.34  Aligned_cols=103  Identities=23%  Similarity=0.425  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-   82 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-   82 (437)
                      ++.+++++++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ 
T Consensus       116 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~  190 (220)
T TIGR02982       116 QEARERARAMLEAVGLGDHLDYYP-----HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE  190 (220)
T ss_pred             HHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHH
Confidence            445568999999999987776655     46999999999999999999999999999999999999999999999987 


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGET  113 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~  113 (437)
                      .|+|+|+++|++.  +.+.+|++++|++|++
T Consensus       191 ~~~tii~~sh~~~--~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       191 QGCTILIVTHDNR--ILDVADRIVHMEDGKL  219 (220)
T ss_pred             cCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence            5899999999974  4689999999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.1e-19  Score=175.93  Aligned_cols=114  Identities=22%  Similarity=0.311  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      .++++++++.+++.+..+.. -+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|
T Consensus       125 ~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~t  202 (264)
T PRK14243        125 DELVERSLRQAALWDEVKDK-LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYT  202 (264)
T ss_pred             HHHHHHHHHHhCchhhHHHH-hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCE
Confidence            45667778888875321111 1234567999999999999999999999999999999999999999999999976 589


Q ss_pred             EEEEecCCchHHHhhcCeEEEEe---------CCeEEEeeChhHHH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLS---------NGETIYFGDAKMAV  123 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~---------~G~~v~~G~~~~~~  123 (437)
                      ||+++|++. ++.+++|++++|+         +|+++..|+++++.
T Consensus       203 vi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~  247 (264)
T PRK14243        203 IIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF  247 (264)
T ss_pred             EEEEecCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence            999999974 7899999999998         79999999988763

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.82  E-value=7.4e-20  Score=213.49  Aligned_cols=116  Identities=26%  Similarity=0.375  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.+++++++++.+||++.+|+.++     .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +
T Consensus      1036 ~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~ 1109 (2272)
T TIGR01257      1036 EEAQLEMEAMLEDTGLHHKRNEEAQ-----DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-S 1109 (2272)
T ss_pred             HHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-C
Confidence            4456789999999999988877665     699999999999999999999999999999999999999999999995 5


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFF  126 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f  126 (437)
                      |+|||+++|++ .++..++||+++|++|+++..|+++++.+.|
T Consensus      1110 g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257      1110 GRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred             CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence            89999999997 4788899999999999999999999887755

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.82  E-value=6.9e-20  Score=173.06  Aligned_cols=116  Identities=22%  Similarity=0.326  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      ++++.++|.++|+.+||...    .-+.++..+|||||||+.|||+|+.+|+++++|||+|.||...+.++.++|+++.+
T Consensus        82 ~~~~~~~v~elL~~Vgl~~~----~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~  157 (268)
T COG4608          82 KEERRERVLELLEKVGLPEE----FLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE  157 (268)
T ss_pred             hhHHHHHHHHHHHHhCCCHH----HhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH
Confidence            45677899999999997642    23457789999999999999999999999999999999999999999999999998


Q ss_pred             -cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 -~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       .|.|.+.++|+.+ .+.+++||+.+|+.|++|..|+.+++.
T Consensus       158 ~~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~~~  198 (268)
T COG4608         158 ELGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEEVF  198 (268)
T ss_pred             HhCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHHHh
Confidence             6999999999964 688999999999999999999999774

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.2e-19  Score=179.33  Aligned_cols=113  Identities=24%  Similarity=0.414  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      +++++++++.++|.+..++.. +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ .|
T Consensus       174 ~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~t  251 (305)
T PRK14264        174 DELVERSLRQAALWDEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YT  251 (305)
T ss_pred             HHHHHHHHHHcCCchhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CE
Confidence            467888999998853222222 3345689999999999999999999999999999999999999999999999874 89


Q ss_pred             EEEEecCCchHHHhhcCeE-EEEeCCeEEEeeChhHH
Q 013741           87 VVCSIHQPSSHLFYLFDDL-LLLSNGETIYFGDAKMA  122 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v-~~L~~G~~v~~G~~~~~  122 (437)
                      +|+++|++. .+.+++|++ ++|++|+++..|++++.
T Consensus       252 iiivtH~~~-~i~~~~d~i~~~l~~G~i~~~g~~~~~  287 (305)
T PRK14264        252 VVVVTHNMQ-QAARISDQTAVFLTGGELVEYDDTDKI  287 (305)
T ss_pred             EEEEEcCHH-HHHHhcCEEEEEecCCEEEEeCCHHHH
Confidence            999999974 678899997 57899999999998765

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=1.2e-19  Score=177.49  Aligned_cols=110  Identities=27%  Similarity=0.410  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            6 INDIVEETIIKMGLQA----CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~----~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ..++++++++.+||.+    ..+.     .+..||||||||++||++|+.+|++|+|||||+|||..++..+.+.|++++
T Consensus       153 ~~~~~~~~l~~~~l~~~i~~~~~~-----~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~  227 (285)
T PRK14254        153 IDERVEESLRRAALWDEVKDQLDS-----SGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA  227 (285)
T ss_pred             HHHHHHHHHHHcCCCchhHHHHhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence            3567889999999853    3333     446799999999999999999999999999999999999999999999998


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEE-EEeCCeEEEeeChhHH
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLL-LLSNGETIYFGDAKMA  122 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~-~L~~G~~v~~G~~~~~  122 (437)
                      ++ .|+|+++|++. ++.+++|+++ +|++|+++..|+.++.
T Consensus       228 ~~-~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~g~~~~~  267 (285)
T PRK14254        228 EE-YTVVIVTHNMQ-QAARISDKTAVFLTGGELVEFDDTDKI  267 (285)
T ss_pred             cC-CEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence            74 89999999974 6788999975 6799999999988765

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.82  E-value=1.2e-19  Score=172.78  Aligned_cols=91  Identities=31%  Similarity=0.437  Sum_probs=83.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741           31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~  110 (437)
                      .++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|+|+++|++. ++. .+|++++|++
T Consensus       136 ~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~  212 (238)
T cd03249         136 RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQN  212 (238)
T ss_pred             CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEEC
Confidence            456899999999999999999999999999999999999999999999997 7899999999975 454 7999999999


Q ss_pred             CeEEEeeChhHHHH
Q 013741          111 GETIYFGDAKMAVK  124 (437)
Q Consensus       111 G~~v~~G~~~~~~~  124 (437)
                      |++++.|+.++..+
T Consensus       213 G~i~~~~~~~~~~~  226 (238)
T cd03249         213 GQVVEQGTHDELMA  226 (238)
T ss_pred             CEEEEeCCHHHHhh
Confidence            99999998876544

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.82  E-value=1.1e-19  Score=172.09  Aligned_cols=112  Identities=25%  Similarity=0.336  Sum_probs=91.6

Q ss_pred             HHHHHHHHcCCcccccccc------cCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            9 IVEETIIKMGLQACAETKI------GNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         9 ~v~~~l~~l~L~~~~~~~v------g~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      .+++.++.+++.+..+...      -+..++.||||||||+.||++|+.+|++++|||||+|||+.++..+.+.|++++ 
T Consensus       108 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-  186 (229)
T cd03254         108 EVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-  186 (229)
T ss_pred             HHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-
Confidence            4555566666654433221      123457899999999999999999999999999999999999999999999996 


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +|+|||+++|++. ++ ..+|++++|++|++++.|+.++..
T Consensus       187 ~~~tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~~~~~~~~  225 (229)
T cd03254         187 KGRTSIIIAHRLS-TI-KNADKILVLDDGKIIEEGTHDELL  225 (229)
T ss_pred             CCCEEEEEecCHH-HH-hhCCEEEEEeCCeEEEeCCHHHHH
Confidence            5899999999985 45 459999999999999999876553

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.82  E-value=1.2e-19  Score=172.47  Aligned_cols=90  Identities=27%  Similarity=0.418  Sum_probs=82.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741           31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~  110 (437)
                      .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |.|||+++|++. ++.. +|++++|++
T Consensus       135 ~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~v~~l~~  211 (234)
T cd03251         135 RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIEN-ADRIVVLED  211 (234)
T ss_pred             CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHhh-CCEEEEecC
Confidence            3567999999999999999999999999999999999999999999999975 899999999985 4554 999999999


Q ss_pred             CeEEEeeChhHHH
Q 013741          111 GETIYFGDAKMAV  123 (437)
Q Consensus       111 G~~v~~G~~~~~~  123 (437)
                      |+++..|+.++..
T Consensus       212 G~i~~~~~~~~~~  224 (234)
T cd03251         212 GKIVERGTHEELL  224 (234)
T ss_pred             CeEeeeCCHHHHH
Confidence            9999999887654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.81  E-value=1e-19  Score=195.38  Aligned_cols=113  Identities=25%  Similarity=0.409  Sum_probs=96.8

Q ss_pred             HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         8 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +.++++++..++.+       -.||.+|+. ...||||||||++|||+++++|++|+||||||+||+.+..++.+.|+++
T Consensus       453 eei~~al~~a~l~~~i~~lp~G~dT~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~  531 (588)
T PRK11174        453 EQLQQALENAWVSEFLPLLPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA  531 (588)
T ss_pred             HHHHHHHHHhCHHHHHHhcccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence            45666666666543       347888864 4579999999999999999999999999999999999999999999988


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      . +++|+|+++|+++  ..+.+|++++|++|+++..|+.++..+
T Consensus       532 ~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~~  572 (588)
T PRK11174        532 S-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELSQ  572 (588)
T ss_pred             h-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence            5 5799999999984  456799999999999999999887753

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.81  E-value=1.9e-19  Score=170.40  Aligned_cols=100  Identities=23%  Similarity=0.334  Sum_probs=88.8

Q ss_pred             HHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741           11 EETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus        11 ~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p--~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      .+.++.+||.+ ..+..     +..||||||||++||++|+.+|  ++++|||||+|||+.++.++.+.|++++++|.|+
T Consensus       118 ~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~ti  192 (226)
T cd03270         118 LGFLVDVGLGYLTLSRS-----APTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTV  192 (226)
T ss_pred             HHHHHHCCCCcccccCc-----cCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence            46788999975 34444     4579999999999999999998  5999999999999999999999999998889999


Q ss_pred             EEEecCCchHHHhhcCeEEEE------eCCeEEEee
Q 013741           88 VCSIHQPSSHLFYLFDDLLLL------SNGETIYFG  117 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G  117 (437)
                      |+++|++. ++ +.+|++++|      ++|++++.|
T Consensus       193 i~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         193 LVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             EEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence            99999985 44 689999999      899999876

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.81  E-value=1.4e-19  Score=175.84  Aligned_cols=114  Identities=19%  Similarity=0.276  Sum_probs=97.5

Q ss_pred             HHHHHHHHHcCCcccccccccC------cccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQACAETKIGN------WHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~------~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      +.+.+.++.+||.+..+...+.      +..+.||||||||+++|++++.+|+|++|||||+|||+.+...+.+.|+++.
T Consensus       106 ~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~  185 (275)
T cd03289         106 EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF  185 (275)
T ss_pred             HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence            4567788899998765554432      1335699999999999999999999999999999999999999999999875


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                       +++|||+++|++. .+. .+||+++|++|++++.|+++++..
T Consensus       186 -~~~tii~isH~~~-~i~-~~dri~vl~~G~i~~~g~~~~l~~  225 (275)
T cd03289         186 -ADCTVILSEHRIE-AML-ECQRFLVIEENKVRQYDSIQKLLN  225 (275)
T ss_pred             -CCCEEEEEECCHH-HHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence             4899999999984 555 499999999999999999998754

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.81  E-value=1.2e-19  Score=190.73  Aligned_cols=109  Identities=28%  Similarity=0.411  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            6 INDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      .+++++++++.+++. +..++.+     ..|||||||||.||++++.+|++|+|||||+|||+.++..+++.|++++++|
T Consensus       367 ~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~  441 (491)
T PRK10982        367 MKSDTQWVIDSMRVKTPGHRTQI-----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKD  441 (491)
T ss_pred             HHHHHHHHHHhcCccCCCccccc-----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCC
Confidence            345788899999995 4456555     4699999999999999999999999999999999999999999999999889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChh
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK  120 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~  120 (437)
                      .|||+++|++. ++.+++|++++|++|+++..++.+
T Consensus       442 ~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~~~~~~~  476 (491)
T PRK10982        442 KGIIIISSEMP-ELLGITDRILVMSNGLVAGIVDTK  476 (491)
T ss_pred             CEEEEECCChH-HHHhhCCEEEEEECCEEEEEEccc
Confidence            99999999974 688999999999999999877653

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.81  E-value=1.1e-19  Score=167.58  Aligned_cols=84  Identities=50%  Similarity=0.944  Sum_probs=79.5

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC-Ce
Q 013741           34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN-GE  112 (437)
Q Consensus        34 ~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~-G~  112 (437)
                      .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.+|++++|++ |+
T Consensus       108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~  187 (192)
T cd03232         108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGK  187 (192)
T ss_pred             cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCe
Confidence            69999999999999999999999999999999999999999999999888999999999986457888999999998 99


Q ss_pred             EEEee
Q 013741          113 TIYFG  117 (437)
Q Consensus       113 ~v~~G  117 (437)
                      +++.|
T Consensus       188 i~~~g  192 (192)
T cd03232         188 TVYFG  192 (192)
T ss_pred             EEeCC
Confidence            99876

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.81  E-value=1.7e-19  Score=167.87  Aligned_cols=98  Identities=29%  Similarity=0.459  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..++++++++.+||++..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus       109 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  183 (206)
T TIGR03608       109 KEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDE  183 (206)
T ss_pred             HHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc
Confidence            344567899999999988777765     469999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEE
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLL  108 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L  108 (437)
                      |.|+|+++|++.  ..+.+|++++|
T Consensus       184 ~~tii~~sh~~~--~~~~~d~i~~l  206 (206)
T TIGR03608       184 GKTIIIVTHDPE--VAKQADRVIEL  206 (206)
T ss_pred             CCEEEEEeCCHH--HHhhcCEEEeC
Confidence            999999999985  34689999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.81  E-value=1.5e-19  Score=167.09  Aligned_cols=84  Identities=60%  Similarity=1.043  Sum_probs=79.8

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741           34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGET  113 (437)
Q Consensus        34 ~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~  113 (437)
                      .||||||||++||++|+.+|++++|||||+|||..++..+.+.|++++++|+|+|+++|++..++.+.+|++++|++|++
T Consensus       111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i  190 (194)
T cd03213         111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRV  190 (194)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEE
Confidence            69999999999999999999999999999999999999999999999878999999999987678889999999999999


Q ss_pred             EEee
Q 013741          114 IYFG  117 (437)
Q Consensus       114 v~~G  117 (437)
                      ++.|
T Consensus       191 ~~~~  194 (194)
T cd03213         191 IYFG  194 (194)
T ss_pred             EecC
Confidence            8765

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.81  E-value=7.5e-20  Score=171.69  Aligned_cols=112  Identities=22%  Similarity=0.344  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CC
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~   85 (437)
                      ....+++.+.||++|..+.     ++..|||||||||+|||+|+++|++|+||||.+.||-....+++-.|++|+++ ..
T Consensus       106 ~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~I  180 (352)
T COG4148         106 RAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINI  180 (352)
T ss_pred             hHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCC
Confidence            3467889999999998876     45679999999999999999999999999999999999999999999999985 66


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      .|+-++|.+ .|+.+++|+|++|.+|++...|+.+++.+
T Consensus       181 PIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~  218 (352)
T COG4148         181 PILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG  218 (352)
T ss_pred             CEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence            899999996 68999999999999999999999997753

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.81  E-value=2.8e-19  Score=171.20  Aligned_cols=107  Identities=19%  Similarity=0.316  Sum_probs=91.8

Q ss_pred             HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEE
Q 013741            9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIV   87 (437)
Q Consensus         9 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tv   87 (437)
                      .++++++.+||.+..++.++     .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+||
T Consensus        95 ~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti  169 (246)
T cd03237          95 FKTEIAKPLQIEQILDREVP-----ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTA  169 (246)
T ss_pred             HHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence            46789999999877776554     6999999999999999999999999999999999999999999999987 58999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEE--EeeChhH
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSNGETI--YFGDAKM  121 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~G~~v--~~G~~~~  121 (437)
                      |+++|++. .+..++|++++|+++..+  ..+++.+
T Consensus       170 iivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~  204 (246)
T cd03237         170 FVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQS  204 (246)
T ss_pred             EEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence            99999974 678899999999765433  3344444

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.81  E-value=3.3e-19  Score=172.66  Aligned_cols=113  Identities=23%  Similarity=0.317  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      ++++++.++.+++.+...+.. +.....||||||||+.||++|+.+|++++|||||+|||..++..+.+.|+++++ +.|
T Consensus       135 ~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~t  212 (265)
T PRK14252        135 EERVENALRNAALWDEVKDRL-GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVT  212 (265)
T ss_pred             HHHHHHHHHHcCCchhhhHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCE
Confidence            456788888888742111111 223457999999999999999999999999999999999999999999999976 689


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      +|+++|++ .++.+++|++++|++|+++..|+.++.
T Consensus       213 iiivth~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~  247 (265)
T PRK14252        213 ILIVTHNM-QQAARVSDYTAYMYMGELIEFGATDTI  247 (265)
T ss_pred             EEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            99999997 468889999999999999999998765

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.81  E-value=2.1e-19  Score=192.66  Aligned_cols=113  Identities=25%  Similarity=0.315  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      +++++++++..|+.+       -.||.+|+. .+.||||||||++|||+|+++|++++||||||+||+.+...+.+.|++
T Consensus       447 ~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~  525 (582)
T PRK11176        447 REQIEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE  525 (582)
T ss_pred             HHHHHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            456777777777543       357888863 467999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +.+ ++|+|+++|+++  ..+.||+|++|++|+++..|+.++..
T Consensus       526 ~~~-~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~  566 (582)
T PRK11176        526 LQK-NRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELL  566 (582)
T ss_pred             HhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            754 699999999984  57789999999999999999988775

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.81  E-value=1.5e-19  Score=167.53  Aligned_cols=109  Identities=26%  Similarity=0.402  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..+++..+++.+|+++.+|...+     .||-||||||-|||||+.+|.+|+||||++|||...+.++.+.|.+++..
T Consensus       146 ~~~~~~a~~lle~~g~~~la~r~~~-----~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~  220 (257)
T COG1119         146 AEDLAAAQWLLELLGAKHLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS  220 (257)
T ss_pred             HHHHHHHHHHHHHcchhhhccCchh-----hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcC
Confidence            4566789999999999999998886     59999999999999999999999999999999999999999999999985


Q ss_pred             --CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeC
Q 013741           84 --GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD  118 (437)
Q Consensus        84 --g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~  118 (437)
                        +.++|+++|++ .++-..|+++++|++|++++.|.
T Consensus       221 ~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~g~  256 (257)
T COG1119         221 PGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGK  256 (257)
T ss_pred             CCCceEEEEEcch-hhcccccceEEEeeCCceeeccc
Confidence              78999999997 57999999999999999999874

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.81  E-value=2.6e-19  Score=162.16  Aligned_cols=113  Identities=26%  Similarity=0.381  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILT------QPTVLLLDEPTSGLDSASAFFVIQVLK   78 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~------~p~ll~lDEPtsgLD~~~~~~i~~~l~   78 (437)
                      |..+.+++.|...++.+.+...+     +.|||||||||.+||.|+.      ++++||||||||.||..-+..++++.+
T Consensus       111 e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR  185 (259)
T COG4559         111 EDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR  185 (259)
T ss_pred             hhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHH
Confidence            45567899999999998887655     4799999999999999975      455899999999999999999999999


Q ss_pred             HHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           79 CIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        79 ~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +++++|..|+++.|+.+ -...++||+++|++||++..|+++++.
T Consensus       186 ~la~~g~~V~~VLHDLN-LAA~YaDrivll~~Grv~a~g~p~~vl  229 (259)
T COG4559         186 QLAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQDVL  229 (259)
T ss_pred             HHHhcCCcEEEEEccch-HHHHhhheeeeeeCCeEeecCCHHHhc
Confidence            99999999999999986 467889999999999999999999875

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.80  E-value=2.1e-19  Score=167.11  Aligned_cols=89  Identities=37%  Similarity=0.636  Sum_probs=80.7

Q ss_pred             CcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEE
Q 013741           29 NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQPSSHLFYLFDDLLL  107 (437)
Q Consensus        29 ~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~hqp~~~i~~~fd~v~~  107 (437)
                      +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.+|++++
T Consensus       113 ~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~  192 (202)
T cd03233         113 NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV  192 (202)
T ss_pred             ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence            4455689999999999999999999999999999999999999999999999875 678888888766788999999999


Q ss_pred             EeCCeEEEee
Q 013741          108 LSNGETIYFG  117 (437)
Q Consensus       108 L~~G~~v~~G  117 (437)
                      |++|++++.|
T Consensus       193 l~~G~i~~~g  202 (202)
T cd03233         193 LYEGRQIYYG  202 (202)
T ss_pred             EECCEEEecC
Confidence            9999998765

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.80  E-value=2.3e-19  Score=195.89  Aligned_cols=111  Identities=25%  Similarity=0.303  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      ++.+.++++..|+.+.       .||.+|+ ....||||||||++|||+++++|++|+||||||+||+.+..++.+.|++
T Consensus       555 ~e~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~  633 (686)
T TIGR03797       555 LDEAWEAARMAGLAEDIRAMPMGMHTVISE-GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER  633 (686)
T ss_pred             HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            3456777887777643       4677875 3467999999999999999999999999999999999999999999988


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +   ++|+|+++|+++  ..+.+|++++|++|+++..|+.+++.
T Consensus       634 ~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~Ll  672 (686)
T TIGR03797       634 L---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDELM  672 (686)
T ss_pred             h---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHHHH
Confidence            6   589999999984  45679999999999999999988775

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.80  E-value=3.7e-19  Score=166.82  Aligned_cols=110  Identities=17%  Similarity=0.210  Sum_probs=94.9

Q ss_pred             HHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Q 013741           12 ETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSI   91 (437)
Q Consensus        12 ~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~   91 (437)
                      .+.+.++|+...|+.++     .+|||||||+++|++++.+|++++|||||+++|+.++..+.+.+.+..+ ++++|+++
T Consensus        87 ~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~ii~vs  160 (213)
T PRK15177         87 FCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGLIVLT  160 (213)
T ss_pred             HHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcEEEEE
Confidence            34456778777776664     6999999999999999999999999999999999999999998865443 46899999


Q ss_pred             cCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHHH
Q 013741           92 HQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAE  128 (437)
Q Consensus        92 hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~~  128 (437)
                      |++. .+..++|++++|++|++++.|+.++..++++.
T Consensus       161 H~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~  196 (213)
T PRK15177        161 HNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ  196 (213)
T ss_pred             CCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence            9975 67889999999999999999999998877654

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.80  E-value=2.2e-19  Score=175.85  Aligned_cols=120  Identities=18%  Similarity=0.315  Sum_probs=107.9

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +++++.++++-++|+..|+.+-....  +.++..|||||||||.||++|+.+|++|+.||||+.||-.-+.+|.++||+|
T Consensus       126 ~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~L  203 (534)
T COG4172         126 LSRAAARARALELLELVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKEL  203 (534)
T ss_pred             ccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHH
Confidence            45677888999999999998765432  4588999999999999999999999999999999999999999999999999


Q ss_pred             Hh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      .+ .|..++.++|+.+ -+-+++|||.+|.+|+++..|+.+++.
T Consensus       204 q~~~gMa~lfITHDL~-iVr~~ADrV~VM~~G~ivE~~~t~~lF  246 (534)
T COG4172         204 QAELGMAILFITHDLG-IVRKFADRVYVMQHGEIVETGTTETLF  246 (534)
T ss_pred             HHHhCcEEEEEeccHH-HHHHhhhhEEEEeccEEeecCcHHHHh
Confidence            87 6999999999974 577888999999999999999988664

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=2.1e-19  Score=182.08  Aligned_cols=114  Identities=27%  Similarity=0.425  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHcCCcccc-------cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQACA-------ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~-------~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      ++.+.++++..||++..       ||.+|+ ..+.||||||||++|||.|++|.++++|||||.|||+.+..++++.|.+
T Consensus       441 DEel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~  519 (573)
T COG4987         441 DEELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE  519 (573)
T ss_pred             HHHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH
Confidence            35677788888887644       445654 5678999999999999999999999999999999999999999999988


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      -++ |+|+|+++|+...  .+.||||++|++|+++..|..++...
T Consensus       520 ~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~G~~~~Ll~  561 (573)
T COG4987         520 HAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAELLA  561 (573)
T ss_pred             Hhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeecCCHHhhhc
Confidence            554 8999999999753  56799999999999999999987754

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.80  E-value=3.2e-19  Score=191.66  Aligned_cols=113  Identities=23%  Similarity=0.345  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      +++++++++..|+.+       -.||.+|. ....||||||||++|||+|+.+|++++||||||+||+.+...+.+.|++
T Consensus       443 d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~  521 (592)
T PRK10790        443 EEQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAA  521 (592)
T ss_pred             HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            356788888888764       34677765 4467999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +++ ++|+|+++|+++  ....+|++++|++|+++..|+.++..
T Consensus       522 ~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~L~  562 (592)
T PRK10790        522 VRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQLL  562 (592)
T ss_pred             HhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            865 599999999984  56679999999999999999999875

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.80  E-value=1.5e-18  Score=187.78  Aligned_cols=112  Identities=25%  Similarity=0.348  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.++++.++++.+||.+..|+..+     .||||||||+.||++|+.+|++++|||||+|||..++..+.+.|++++++
T Consensus       119 ~~~~~~~~~~l~~lgl~~~~~~~~~-----~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~  193 (648)
T PRK10535        119 KQRLLRAQELLQRLGLEDRVEYQPS-----QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDR  193 (648)
T ss_pred             HHHHHHHHHHHHHCCChhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc
Confidence            4556688999999999987777654     69999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |+|+|+++|++. .+ +.+|++++|++|++++.|+.++.
T Consensus       194 g~tilivsH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~  230 (648)
T PRK10535        194 GHTVIIVTHDPQ-VA-AQAERVIEIRDGEIVRNPPAQEK  230 (648)
T ss_pred             CCEEEEECCCHH-HH-HhCCEEEEEECCEEEeecCcccc
Confidence            999999999975 34 57999999999999999988754

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.80  E-value=3.3e-19  Score=189.67  Aligned_cols=98  Identities=29%  Similarity=0.510  Sum_probs=88.3

Q ss_pred             ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741           23 AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF  102 (437)
Q Consensus        23 ~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~f  102 (437)
                      .||.+|. ..+.||||||||++|||+++++|++++|||||+|||+.++.++.+.|++++.+|+|+|+++|+++  ..+.+
T Consensus       444 l~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~  520 (544)
T TIGR01842       444 YDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCV  520 (544)
T ss_pred             cccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhC
Confidence            3566664 45789999999999999999999999999999999999999999999998777899999999985  45779


Q ss_pred             CeEEEEeCCeEEEeeChhHHH
Q 013741          103 DDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus       103 d~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |++++|++|+++..|+.++..
T Consensus       521 d~i~~l~~G~i~~~g~~~~l~  541 (544)
T TIGR01842       521 DKILVLQDGRIARFGERDEVL  541 (544)
T ss_pred             CEEEEEECCEEEeeCCHHHHh
Confidence            999999999999999987664

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.80  E-value=3.5e-19  Score=190.51  Aligned_cols=114  Identities=28%  Similarity=0.480  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHcCCccc------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQAC------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      ++.+.+.++..++.+.      .||.+|+ ..+.||||||||++|||+++++|++++|||||++||+.+...+.+.|+++
T Consensus       443 ~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~  521 (574)
T PRK11160        443 DEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEH  521 (574)
T ss_pred             HHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            4578888999998765      4677775 35679999999999999999999999999999999999999999999998


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      . +++|+|+++|+++.  ...+|++++|++|+++..|+.++..+
T Consensus       522 ~-~~~tviiitHr~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~  562 (574)
T PRK11160        522 A-QNKTVLMITHRLTG--LEQFDRICVMDNGQIIEQGTHQELLA  562 (574)
T ss_pred             c-CCCEEEEEecChhH--HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence            6 47999999999853  45699999999999999999887653

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.80  E-value=4.9e-19  Score=168.36  Aligned_cols=90  Identities=30%  Similarity=0.458  Sum_probs=82.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741           31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~  110 (437)
                      .++.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++ |+|+|+++|++. .+. .+|++++|++
T Consensus       134 ~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~-~~d~~~~l~~  210 (236)
T cd03253         134 RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TIV-NADKIIVLKD  210 (236)
T ss_pred             CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHH-hCCEEEEEEC
Confidence            3568999999999999999999999999999999999999999999999987 899999999975 454 4999999999


Q ss_pred             CeEEEeeChhHHH
Q 013741          111 GETIYFGDAKMAV  123 (437)
Q Consensus       111 G~~v~~G~~~~~~  123 (437)
                      |+++..|+.++..
T Consensus       211 g~i~~~~~~~~~~  223 (236)
T cd03253         211 GRIVERGTHEELL  223 (236)
T ss_pred             CEEEeeCCHHHHh
Confidence            9999999877553

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.80  E-value=6.5e-19  Score=169.30  Aligned_cols=105  Identities=25%  Similarity=0.333  Sum_probs=92.8

Q ss_pred             HHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            8 DIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQ---PTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         8 ~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~---p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      +++.+.++.+||.+ ..+..+     +.||||||||+.||++|+.+   |++++|||||+|||+.....+.+.|++++++
T Consensus       147 ~~~~~~L~~vgL~~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~  221 (261)
T cd03271         147 ARKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK  221 (261)
T ss_pred             HHHHHHHHHcCCchhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence            46678899999986 345444     57999999999999999996   7999999999999999999999999999988


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeCh
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDA  119 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~  119 (437)
                      |.|+|+++|++. .+ +.+|+++.|      ++|++++.|++
T Consensus       222 g~tvIiitH~~~-~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         222 GNTVVVIEHNLD-VI-KCADWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             CCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence            999999999975 34 579999999      79999999974

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.79  E-value=4.3e-19  Score=189.69  Aligned_cols=101  Identities=28%  Similarity=0.437  Sum_probs=90.9

Q ss_pred             cccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHH
Q 013741           20 QACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLF   99 (437)
Q Consensus        20 ~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~   99 (437)
                      .+-.||.+| +....||||||||++|||+++++|++|+||||||.||+.+...+.+.++++. +++|++++.|.++ .+.
T Consensus       452 p~g~dt~vg-e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti~  528 (567)
T COG1132         452 PDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TIK  528 (567)
T ss_pred             cccccceec-CCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HHH
Confidence            335789998 4556799999999999999999999999999999999999999999999887 5689999999985 455


Q ss_pred             hhcCeEEEEeCCeEEEeeChhHHHH
Q 013741          100 YLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus       100 ~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      + +|++++|++|+++..|+.+++.+
T Consensus       529 ~-aD~IiVl~~G~i~e~G~h~eLl~  552 (567)
T COG1132         529 N-ADRIIVLDNGRIVERGTHEELLA  552 (567)
T ss_pred             h-CCEEEEEECCEEEEecCHHHHHH
Confidence            5 99999999999999999998865

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.79  E-value=4.4e-19  Score=159.42  Aligned_cols=80  Identities=25%  Similarity=0.445  Sum_probs=76.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEE
Q 013741           35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETI  114 (437)
Q Consensus        35 lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v  114 (437)
                      ||||||||+++|++++.+|++++|||||+|||..++..+.+.|++++++|.|+|+++|++. ++.+.+|++++|++|+++
T Consensus        83 LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~  161 (163)
T cd03216          83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVV  161 (163)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence            9999999999999999999999999999999999999999999999888999999999974 678889999999999987


Q ss_pred             E
Q 013741          115 Y  115 (437)
Q Consensus       115 ~  115 (437)
                      +
T Consensus       162 ~  162 (163)
T cd03216         162 G  162 (163)
T ss_pred             e
Confidence            5

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.79  E-value=5e-19  Score=170.28  Aligned_cols=106  Identities=25%  Similarity=0.366  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +.++.++++++.+||.+..+..+     +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus       115 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~  189 (255)
T cd03236         115 DERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDD  189 (255)
T ss_pred             HHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC
Confidence            33467889999999987766654     4699999999999999999999999999999999999999999999998888


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG  117 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G  117 (437)
                      +|+|+++|++. .+.+++|++++|+ |++.+.|
T Consensus       190 ~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~  220 (255)
T cd03236         190 NYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG  220 (255)
T ss_pred             CEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence            99999999974 6777899999995 5565544

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.79  E-value=7.1e-19  Score=169.61  Aligned_cols=90  Identities=21%  Similarity=0.312  Sum_probs=82.0

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741           31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~  110 (437)
                      ..+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++ ++.|+|+++|++. .+.. +|++++|++
T Consensus       153 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~-~dri~~l~~  229 (257)
T cd03288         153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TILD-ADLVLVLSR  229 (257)
T ss_pred             CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHHh-CCEEEEEEC
Confidence            456899999999999999999999999999999999999999999999975 4899999999986 4554 999999999


Q ss_pred             CeEEEeeChhHHH
Q 013741          111 GETIYFGDAKMAV  123 (437)
Q Consensus       111 G~~v~~G~~~~~~  123 (437)
                      |+++..|++++..
T Consensus       230 G~i~~~g~~~~~~  242 (257)
T cd03288         230 GILVECDTPENLL  242 (257)
T ss_pred             CEEEEeCCHHHHH
Confidence            9999999987664

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.79  E-value=7.7e-19  Score=159.42  Aligned_cols=98  Identities=26%  Similarity=0.364  Sum_probs=84.3

Q ss_pred             HHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741           11 EETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQ--PTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus        11 ~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~--p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      .+.++.++|.. ..+..     ++.||||||||++||++++.+  |++++|||||+|||..++..+.+.|++++++|+||
T Consensus        68 ~~~l~~~~L~~~~~~~~-----~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tv  142 (176)
T cd03238          68 LQFLIDVGLGYLTLGQK-----LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTV  142 (176)
T ss_pred             HHHHHHcCCCccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence            35788899875 34444     457999999999999999999  99999999999999999999999999998789999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEEE
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSNGETIY  115 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~  115 (437)
                      |+++|++. .+ +.+|++++|.+|+..+
T Consensus       143 IivSH~~~-~~-~~~d~i~~l~~g~~~~  168 (176)
T cd03238         143 ILIEHNLD-VL-SSADWIIDFGPGSGKS  168 (176)
T ss_pred             EEEeCCHH-HH-HhCCEEEEECCCCCCC
Confidence            99999975 44 6799999997655433

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.79  E-value=5.1e-19  Score=193.90  Aligned_cols=112  Identities=20%  Similarity=0.331  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      ++++.++++..|+.+       -.||.+|+ ...+||||||||++|||+++++|++++||||||+||+.+..++.+.|++
T Consensus       582 ~~~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~  660 (710)
T TIGR03796       582 DADLVRACKDAAIHDVITSRPGGYDAELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR  660 (710)
T ss_pred             HHHHHHHHHHhCCHHHHHhCcCcccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh
Confidence            345667777777654       34677775 3568999999999999999999999999999999999999999999986


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                         .++|+|+++|+++  ....+|++++|++|+++..|+.+++.+
T Consensus       661 ---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll~  700 (710)
T TIGR03796       661 ---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELWA  700 (710)
T ss_pred             ---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence               4799999999985  456699999999999999999998764

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.79  E-value=5.7e-19  Score=193.07  Aligned_cols=114  Identities=26%  Similarity=0.440  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      ++++.++++..|+.+       -.||.+|+ ....||||||||++|||+++++|++++||||||+||+.+..++.+.|++
T Consensus       568 ~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~  646 (694)
T TIGR03375       568 DEEILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR  646 (694)
T ss_pred             HHHHHHHHHHcChHHHHHhCcccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            345666777766643       35778875 3567999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      +.+ ++|+|+++|+++  ..+.+|++++|++|+++..|+.++..+
T Consensus       647 ~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~  688 (694)
T TIGR03375       647 WLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLE  688 (694)
T ss_pred             HhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence            864 799999999985  457899999999999999999888754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.3e-18  Score=159.66  Aligned_cols=122  Identities=30%  Similarity=0.429  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            5 EINDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      +..+++++.++.+++.+ .++..+.    .|+|||||||..|...++.+|++.+||||-||||..+-..+.+.+.+++..
T Consensus       118 ~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~  193 (251)
T COG0396         118 EFIKELKEKAELLGLDEEFLERYVN----EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE  193 (251)
T ss_pred             HHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC
Confidence            55678999999999987 5665554    489999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEecCCchHHHhhc--CeEEEEeCCeEEEeeChhHHHHHHHHcCCCC
Q 013741           84 GRIVVCSIHQPSSHLFYLF--DDLLLLSNGETIYFGDAKMAVKFFAEAGFPC  133 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~f--d~v~~L~~G~~v~~G~~~~~~~~f~~~g~~~  133 (437)
                      |++++++||..  .+.+.-  |+|.+|.+||++..|.+ ++.+++++.||.|
T Consensus       194 ~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~  242 (251)
T COG0396         194 GRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDW  242 (251)
T ss_pred             CCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHH
Confidence            99999999995  577777  99999999999999999 7888999999865

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.79  E-value=5.9e-19  Score=188.77  Aligned_cols=113  Identities=26%  Similarity=0.358  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      +++++++++..||.+       -.||.+|+. .+.||||||||++|||+++++|++++||||||+||..+...+.+.|++
T Consensus       436 ~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~  514 (571)
T TIGR02203       436 RAEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALER  514 (571)
T ss_pred             HHHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            456777888888754       356778754 567999999999999999999999999999999999999999999998


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ++ +++|+|+++|+++  ..+.+|++++|++|+++..|+.++..
T Consensus       515 ~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l~  555 (571)
T TIGR02203       515 LM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNELL  555 (571)
T ss_pred             Hh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence            75 4699999999984  67889999999999999999988764

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.79  E-value=6.9e-19  Score=165.69  Aligned_cols=107  Identities=19%  Similarity=0.346  Sum_probs=90.3

Q ss_pred             HHHHHHHHHcCCcccccc-------cccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQACAET-------KIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~-------~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +++.+.++.+++.+..+.       .. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus       107 ~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  185 (221)
T cd03244         107 EELWQALERVGLKEFVESLPGGLDTVV-EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREA  185 (221)
T ss_pred             HHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence            356667777887665432       11 2356789999999999999999999999999999999999999999999998


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeC
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD  118 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~  118 (437)
                      ++ +.|+|+++|++. ++. .+|++++|++|+++..|+
T Consensus       186 ~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         186 FK-DCTVLTIAHRLD-TII-DSDRILVLDKGRVVEFDS  220 (221)
T ss_pred             cC-CCEEEEEeCCHH-HHh-hCCEEEEEECCeEEecCC
Confidence            65 689999999975 454 499999999999998876

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=6.1e-19  Score=181.11  Aligned_cols=113  Identities=27%  Similarity=0.411  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHcCCccc------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQAC------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      ++.+.++++.-||.+.      .|+.+|+ ..++|||||+|||++||+|+.+++++++||||++||..+...+.+.|.++
T Consensus       424 ~e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l  502 (559)
T COG4988         424 DEEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL  502 (559)
T ss_pred             HHHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHH
Confidence            4567777777777654      3566664 56789999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +++ +|+++++|++.  ...-+|+|++|++|+++..|..+++.
T Consensus       503 ~~~-ktvl~itHrl~--~~~~~D~I~vld~G~l~~~g~~~~L~  542 (559)
T COG4988         503 AKQ-KTVLVITHRLE--DAADADRIVVLDNGRLVEQGTHEELS  542 (559)
T ss_pred             HhC-CeEEEEEcChH--HHhcCCEEEEecCCceeccCCHHHHh
Confidence            886 99999999974  45568999999999999999998874

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.79  E-value=2.7e-19  Score=160.27  Aligned_cols=115  Identities=23%  Similarity=0.395  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-   82 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-   82 (437)
                      +|.++.+++.++.++|++..|..+     ..||||||||.-||+.++.+.+.++||||.++||-.-+.++|+.||++++ 
T Consensus       110 ~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~e  184 (252)
T COG4604         110 KEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADE  184 (252)
T ss_pred             hHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHH
Confidence            456789999999999999888765     57999999999999999999999999999999999999999999999998 


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      -|+|||+++|+.+ ....+.|.++-|++|+++..|+++++.+
T Consensus       185 l~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~eii~  225 (252)
T COG4604         185 LGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEIIQ  225 (252)
T ss_pred             hCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHhcC
Confidence            5999999999975 6778899999999999999999998753

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.79  E-value=5.6e-19  Score=154.90  Aligned_cols=105  Identities=25%  Similarity=0.336  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-   82 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-   82 (437)
                      .+-.+...+.|+.+||.+..+.     ++..|||||+|||+|||+++..|++||-||||.+||..+..+|.++|-.+.+ 
T Consensus       121 ~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre  195 (228)
T COG4181         121 ADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE  195 (228)
T ss_pred             ccHHHHHHHHHHHhCccccccc-----CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh
Confidence            3445678899999999977654     5678999999999999999999999999999999999999999999999987 


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEE
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIY  115 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~  115 (437)
                      .|.|.|+++|+|.  +..-|||.+-|..|+++.
T Consensus       196 ~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~  226 (228)
T COG4181         196 RGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE  226 (228)
T ss_pred             cCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence            6999999999985  678899999999999864

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.79  E-value=8.3e-19  Score=192.19  Aligned_cols=112  Identities=23%  Similarity=0.350  Sum_probs=96.7

Q ss_pred             HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         8 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +.+.++++..|+.+       -.||.+|+ ...+||||||||++|||+++++|++|+||||||+||+.+...+.+.|+++
T Consensus       579 ~~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~  657 (708)
T TIGR01193       579 DEIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL  657 (708)
T ss_pred             HHHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence            45667777766643       34788875 45679999999999999999999999999999999999999999999985


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                        +|+|+|+++|+++  ..+.+|++++|++|+++..|+.++..+
T Consensus       658 --~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~  697 (708)
T TIGR01193       658 --QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD  697 (708)
T ss_pred             --cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence              5799999999985  467899999999999999999887754

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.78  E-value=3.8e-19  Score=191.58  Aligned_cols=101  Identities=29%  Similarity=0.457  Sum_probs=91.0

Q ss_pred             cccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHH
Q 013741           20 QACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLF   99 (437)
Q Consensus        20 ~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~   99 (437)
                      -.-.||.+|+ ...+||||||||++|||+|+++|+||+||||||+||+.+...+.+.|+++.. |+|+|+++|.++  ..
T Consensus       596 P~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti  671 (709)
T COG2274         596 PMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TI  671 (709)
T ss_pred             cccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--Hh
Confidence            3445677874 5568999999999999999999999999999999999999999999999765 699999999975  67


Q ss_pred             hhcCeEEEEeCCeEEEeeChhHHHH
Q 013741          100 YLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus       100 ~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      +.+||+++|++|+++..|+.++..+
T Consensus       672 ~~adrIiVl~~Gkiv~~gs~~ell~  696 (709)
T COG2274         672 RSADRIIVLDQGKIVEQGSHEELLA  696 (709)
T ss_pred             hhccEEEEccCCceeccCCHHHHHH
Confidence            8899999999999999999998865

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.78  E-value=1e-18  Score=191.01  Aligned_cols=113  Identities=24%  Similarity=0.401  Sum_probs=96.4

Q ss_pred             HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         8 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +.+.+.++..|+.+       -.||.+|+ ..++||||||||++|||+|+++|++++|||||+|||+.+..++.+.|+++
T Consensus       561 ~~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~  639 (694)
T TIGR01846       561 EHVIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREI  639 (694)
T ss_pred             HHHHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence            45556666666543       35777775 35689999999999999999999999999999999999999999999998


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      . +++|+|+++|+++  ....+|++++|++|+++..|+.++..+
T Consensus       640 ~-~~~t~i~itH~~~--~~~~~d~ii~l~~G~i~~~g~~~~l~~  680 (694)
T TIGR01846       640 C-RGRTVIIIAHRLS--TVRACDRIIVLEKGQIAESGRHEELLA  680 (694)
T ss_pred             h-CCCEEEEEeCChH--HHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence            5 5799999999985  345699999999999999999887653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.78  E-value=9.6e-19  Score=161.02  Aligned_cols=109  Identities=24%  Similarity=0.397  Sum_probs=98.3

Q ss_pred             HHHHHHHcC-CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEE
Q 013741           10 VEETIIKMG-LQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIV   87 (437)
Q Consensus        10 v~~~l~~l~-L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~tv   87 (437)
                      ++++.+.+- |.+.++++.|+     |||||||.++|||+|+++|++|+|||||.||-|.-..+|.+.+++++++ |.||
T Consensus       116 ~e~v~~lFP~Lker~~~~aG~-----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tI  190 (237)
T COG0410         116 LEEVYELFPRLKERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTI  190 (237)
T ss_pred             HHHHHHHChhHHHHhcCcccC-----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEE
Confidence            788888885 88888888875     9999999999999999999999999999999999999999999999975 6677


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      +++-+. -....++.||.++|.+|++++.|+.+++.+
T Consensus       191 lLVEQn-~~~Al~iaDr~yvle~Griv~~G~~~eL~~  226 (237)
T COG0410         191 LLVEQN-ARFALEIADRGYVLENGRIVLSGTAAELLA  226 (237)
T ss_pred             EEEecc-HHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence            777655 567889999999999999999999987753

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.78  E-value=6.9e-19  Score=184.95  Aligned_cols=106  Identities=19%  Similarity=0.365  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            7 NDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      +++++++++.+||.+ ..++.++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.
T Consensus       378 ~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~  452 (490)
T PRK10938        378 QKLAQQWLDILGIDKRTADAPFH-----SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGE  452 (490)
T ss_pred             HHHHHHHHHHcCCchhhccCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCC
Confidence            457899999999987 6666654     6999999999999999999999999999999999999999999999988764


Q ss_pred             -EEEEEecCCchHHHh-hcCeEEEEeCCeEEEeeC
Q 013741           86 -IVVCSIHQPSSHLFY-LFDDLLLLSNGETIYFGD  118 (437)
Q Consensus        86 -tvi~t~hqp~~~i~~-~fd~v~~L~~G~~v~~G~  118 (437)
                       |||+++|++. ++.+ ++|++++|++|+++..-.
T Consensus       453 ~tviivsHd~~-~~~~~~~d~v~~l~~G~i~~~~~  486 (490)
T PRK10938        453 TQLLFVSHHAE-DAPACITHRLEFVPDGDIYRYVQ  486 (490)
T ss_pred             cEEEEEecchh-hhhhhhheeEEEecCCceEEeec
Confidence             6999999974 5666 589999999999887643

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.78  E-value=9.7e-19  Score=187.80  Aligned_cols=113  Identities=27%  Similarity=0.390  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      ++.+.+.++..|+.+       -.||.+|+ ..+.||||||||++|||+|+++|++++||||||+||+.+...+.+.|++
T Consensus       438 d~~i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~  516 (588)
T PRK13657        438 DEEMRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDE  516 (588)
T ss_pred             HHHHHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            345666777766553       34677765 3567999999999999999999999999999999999999999999998


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +. +++|+|+++|+++  ..+.+|++++|++|+++..|+.++..
T Consensus       517 ~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~  557 (588)
T PRK13657        517 LM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELV  557 (588)
T ss_pred             Hh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            75 4799999999984  56789999999999999999987764

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.78  E-value=9.1e-19  Score=162.67  Aligned_cols=96  Identities=26%  Similarity=0.385  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      +++++++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|
T Consensus       103 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~t  177 (201)
T cd03231         103 DEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGM  177 (201)
T ss_pred             HHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence            457889999999987776655     469999999999999999999999999999999999999999999999888999


Q ss_pred             EEEEecCCchHHHhhcCeEEEE
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLL  108 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L  108 (437)
                      +|+++|++. ++...+|+++++
T Consensus       178 iii~sH~~~-~~~~~~~~~~~~  198 (201)
T cd03231         178 VVLTTHQDL-GLSEAGARELDL  198 (201)
T ss_pred             EEEEecCch-hhhhccceeEec
Confidence            999999975 577789999887

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.78  E-value=7.2e-19  Score=193.49  Aligned_cols=103  Identities=27%  Similarity=0.443  Sum_probs=92.3

Q ss_pred             CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Q 013741           18 GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH   97 (437)
Q Consensus        18 ~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~   97 (437)
                      .|.+-.||.+|+..+. ||||||||++|||+|+.||+||+||||||+||+.+...+.+.|.+.+ +|+|.|++.|+.+ .
T Consensus       474 ~lp~g~~T~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-t  550 (1228)
T KOG0055|consen  474 KLPDGYDTLVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-T  550 (1228)
T ss_pred             hhHHhhcccccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-h
Confidence            3566778999986555 99999999999999999999999999999999999999999998754 5899999999975 5


Q ss_pred             HHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           98 LFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        98 i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      +-+ .|+++++++|+++..|+.+|+.+
T Consensus       551 Irn-aD~I~v~~~G~IvE~G~h~ELi~  576 (1228)
T KOG0055|consen  551 IRN-ADKIAVMEEGKIVEQGTHDELIA  576 (1228)
T ss_pred             hhc-cCEEEEEECCEEEEecCHHHHHh
Confidence            666 99999999999999999998865

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.78  E-value=9.7e-19  Score=160.93  Aligned_cols=87  Identities=36%  Similarity=0.539  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..++++++++.+||.+..++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus       102 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~  176 (190)
T TIGR01166       102 AEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE  176 (190)
T ss_pred             HHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc
Confidence            344567899999999988777655     469999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCc
Q 013741           84 GRIVVCSIHQPS   95 (437)
Q Consensus        84 g~tvi~t~hqp~   95 (437)
                      |+|||+++|++.
T Consensus       177 ~~tili~sH~~~  188 (190)
T TIGR01166       177 GMTVVISTHDVD  188 (190)
T ss_pred             CCEEEEEeeccc
Confidence            999999999974

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.78  E-value=6.4e-19  Score=161.13  Aligned_cols=78  Identities=26%  Similarity=0.471  Sum_probs=74.3

Q ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741           35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGET  113 (437)
Q Consensus        35 lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~  113 (437)
                      ||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.+++|++++|++|++
T Consensus       105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI  182 (182)
T ss_pred             cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence            9999999999999999999999999999999999999999999999878899999999974 78899999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.78  E-value=7.9e-19  Score=159.24  Aligned_cols=78  Identities=35%  Similarity=0.545  Sum_probs=74.2

Q ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741           35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGET  113 (437)
Q Consensus        35 lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~  113 (437)
                      ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++. ++.+.+|++++|++|++
T Consensus        96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i  173 (173)
T cd03230          96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI  173 (173)
T ss_pred             cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence            9999999999999999999999999999999999999999999999888899999999975 67889999999999874

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.78  E-value=1.6e-18  Score=185.90  Aligned_cols=98  Identities=29%  Similarity=0.393  Sum_probs=86.7

Q ss_pred             ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741           23 AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF  102 (437)
Q Consensus        23 ~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~f  102 (437)
                      .||.+|+ ....||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++. +++|+|+++|+++ .+ +.+
T Consensus       461 ~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~-~~-~~~  536 (585)
T TIGR01192       461 YDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS-TV-RNA  536 (585)
T ss_pred             ccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH-HH-HcC
Confidence            3566664 456799999999999999999999999999999999999999999999875 5899999999984 34 669


Q ss_pred             CeEEEEeCCeEEEeeChhHHHH
Q 013741          103 DDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus       103 d~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      |++++|++|+++..|+.++..+
T Consensus       537 d~i~~l~~G~i~~~g~~~~l~~  558 (585)
T TIGR01192       537 DLVLFLDQGRLIEKGSFQELIQ  558 (585)
T ss_pred             CEEEEEECCEEEEECCHHHHHH
Confidence            9999999999999999887653

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.78  E-value=1.6e-18  Score=185.26  Aligned_cols=112  Identities=22%  Similarity=0.369  Sum_probs=95.6

Q ss_pred             HHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQ-------ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         8 ~~v~~~l~~l~L~-------~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +.+++.++..++.       +-.||.+|+ ....||||||||++|||+++++|++++|||||+|||+.+..++.+.|+++
T Consensus       419 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~  497 (569)
T PRK10789        419 QEIEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQW  497 (569)
T ss_pred             HHHHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence            4556666666654       334677765 35679999999999999999999999999999999999999999999997


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      . +|+|+|+++|+++  ..+.+|++++|++|+++..|+.++..
T Consensus       498 ~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~  537 (569)
T PRK10789        498 G-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLA  537 (569)
T ss_pred             h-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHH
Confidence            5 5899999999984  45679999999999999999988764

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.78  E-value=1.4e-18  Score=163.09  Aligned_cols=98  Identities=23%  Similarity=0.339  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      ++++++.++.++|.+..++.+     +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|.|
T Consensus       115 ~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t  189 (214)
T PRK13543        115 KQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGA  189 (214)
T ss_pred             HHHHHHHHHHcCChhhccCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence            346778999999987777665     469999999999999999999999999999999999999999999999888999


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeC
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~  110 (437)
                      +|+++|++. ++.+++|++++++.
T Consensus       190 iii~sH~~~-~~~~~~~~i~~l~~  212 (214)
T PRK13543        190 ALVTTHGAY-AAPPVRTRMLTLEA  212 (214)
T ss_pred             EEEEecChh-hhhhhcceEEEEee
Confidence            999999974 78999999999863

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.78  E-value=1.5e-18  Score=163.70  Aligned_cols=99  Identities=20%  Similarity=0.313  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            5 EINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      +..++++++++.+||.+. .+..     ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus       124 ~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~  198 (224)
T TIGR02324       124 AARARARELLARLNIPERLWHLP-----PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR  198 (224)
T ss_pred             HHHHHHHHHHHHcCCchhhhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc
Confidence            345678889999999753 3444     4579999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEe
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLS  109 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~  109 (437)
                      |.|+|+++|++ ..+.+++|+++.+.
T Consensus       199 g~tii~vsH~~-~~~~~~~d~i~~~~  223 (224)
T TIGR02324       199 GAALIGIFHDE-EVRELVADRVMDVT  223 (224)
T ss_pred             CCEEEEEeCCH-HHHHHhcceeEecC
Confidence            99999999995 45778899998763

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.78  E-value=1.1e-18  Score=162.51  Aligned_cols=96  Identities=23%  Similarity=0.339  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      +++++++++.+||.+..|+.+     +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|.|
T Consensus       107 ~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t  181 (204)
T PRK13538        107 DEALWEALAQVGLAGFEDVPV-----RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGM  181 (204)
T ss_pred             HHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCE
Confidence            457889999999987776655     469999999999999999999999999999999999999999999999888899


Q ss_pred             EEEEecCCchHHHhhcCeEEEE
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLL  108 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L  108 (437)
                      +|+++|++. .+-..-+|++++
T Consensus       182 iii~sh~~~-~i~~~~~~~~~~  202 (204)
T PRK13538        182 VILTTHQDL-PVASDKVRKLRL  202 (204)
T ss_pred             EEEEecChh-hhccCCceEEec
Confidence            999999975 455555677666

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.78  E-value=1e-18  Score=165.12  Aligned_cols=96  Identities=31%  Similarity=0.398  Sum_probs=83.5

Q ss_pred             HHHHHHHc--CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741           10 VEETIIKM--GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus        10 v~~~l~~l--~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      +++.++.+  |+++..+..     ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+
T Consensus       129 ~~~~l~~l~~gl~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ti  202 (226)
T cd03248         129 AHSFISELASGYDTEVGEK-----GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTV  202 (226)
T ss_pred             cHHHHHhccccccchhhcC-----CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEE
Confidence            56778887  776555544     457999999999999999999999999999999999999999999999876 6899


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeE
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSNGET  113 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~G~~  113 (437)
                      |+++|++. ++. .+|++++|++|++
T Consensus       203 i~~sh~~~-~~~-~~d~i~~l~~g~i  226 (226)
T cd03248         203 LVIAHRLS-TVE-RADQILVLDGGRI  226 (226)
T ss_pred             EEEECCHH-HHH-hCCEEEEecCCcC
Confidence            99999985 454 5999999999874

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.78  E-value=1.2e-18  Score=164.67  Aligned_cols=105  Identities=24%  Similarity=0.324  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 013741            7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DG   84 (437)
Q Consensus         7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g   84 (437)
                      +++++++++.+||. ...++.+     +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|
T Consensus       114 ~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~  188 (225)
T PRK10247        114 PAIFLDDLERFALPDTILTKNI-----AELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQN  188 (225)
T ss_pred             HHHHHHHHHHcCCChHHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence            35678999999995 3555544     56999999999999999999999999999999999999999999999987 48


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEe-CCeEEEeeC
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLS-NGETIYFGD  118 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~-~G~~v~~G~  118 (437)
                      .|+|+++|++. ++ ..+|++++|. ++..+..|.
T Consensus       189 ~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~  221 (225)
T PRK10247        189 IAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEAR  221 (225)
T ss_pred             CEEEEEECChH-HH-HhCCEEEEEecccchHhhhh
Confidence            99999999975 45 4699999995 555555443

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.77  E-value=9.7e-19  Score=194.68  Aligned_cols=120  Identities=23%  Similarity=0.424  Sum_probs=113.0

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.++.++..++.+||.+++|+.+|     .+|||+|||+++|.+++.+|++++|||||+|+||.++..+.+.++++.
T Consensus       671 ~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~  745 (885)
T KOG0059|consen  671 PRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLR  745 (885)
T ss_pred             ChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence            566788889999999999999999886     499999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHH
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFA  127 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~  127 (437)
                      ++|+.+|.|+|.. +|...+|||+.+|.+|+....|++++..+.|.
T Consensus       746 k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG  790 (885)
T KOG0059|consen  746 KNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQELKSRYG  790 (885)
T ss_pred             hcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHHHHhhcC
Confidence            9888999999995 68999999999999999999999999998774

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.77  E-value=1e-18  Score=158.46  Aligned_cols=77  Identities=29%  Similarity=0.517  Sum_probs=72.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741           35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGET  113 (437)
Q Consensus        35 lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~  113 (437)
                      ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+ +.+|++++|++|++
T Consensus        97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i  173 (173)
T cd03246          97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV  173 (173)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence            9999999999999999999999999999999999999999999999888999999999975 45 67999999999974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.77  E-value=1.6e-18  Score=189.74  Aligned_cols=112  Identities=24%  Similarity=0.395  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      ++.+.++++..++.+.       .||.+|+ ..+.||||||||++|||+++++|+|++||||||+||+.+...+.+ .. 
T Consensus       584 ~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~-  660 (711)
T TIGR00958       584 DEEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR-  660 (711)
T ss_pred             HHHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-
Confidence            4567777887776543       5777875 356799999999999999999999999999999999999999888 22 


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                       ..+++|+|+++|+++  ..+.+|+|++|++|+++..|+.++..+
T Consensus       661 -~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~  702 (711)
T TIGR00958       661 -SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME  702 (711)
T ss_pred             -ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence             236899999999985  456799999999999999999988754

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.77  E-value=2e-18  Score=157.34  Aligned_cols=83  Identities=29%  Similarity=0.506  Sum_probs=76.4

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741           32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG  111 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G  111 (437)
                      ++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++ ++.|+|+++|++. ++ ..+|++++|++|
T Consensus        96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g  172 (178)
T cd03247          96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENG  172 (178)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECC
Confidence            56799999999999999999999999999999999999999999999996 5899999999986 45 469999999999


Q ss_pred             eEEEee
Q 013741          112 ETIYFG  117 (437)
Q Consensus       112 ~~v~~G  117 (437)
                      ++++.|
T Consensus       173 ~i~~~~  178 (178)
T cd03247         173 KIIMQG  178 (178)
T ss_pred             EEEecC
Confidence            998764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.77  E-value=2.7e-18  Score=182.12  Aligned_cols=108  Identities=22%  Similarity=0.343  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHcCCcccc-cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            7 NDIVEETIIKMGLQACA-ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~-~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      +++++++++.+||.+.. +..+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++   .|.
T Consensus       132 ~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~  203 (530)
T PRK15064        132 EARAGELLLGVGIPEEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNS  203 (530)
T ss_pred             HHHHHHHHHhCCCChhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCC
Confidence            45788999999997543 2333     56999999999999999999999999999999999999999999864   588


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeE-EEeeChhHHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGET-IYFGDAKMAV  123 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~-v~~G~~~~~~  123 (437)
                      |||+++|++. .+.+++|++++|++|++ ++.|++++..
T Consensus       204 tiiivsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~  241 (530)
T PRK15064        204 TMIIISHDRH-FLNSVCTHMADLDYGELRVYPGNYDEYM  241 (530)
T ss_pred             eEEEEeCCHH-HHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence            9999999975 68899999999999999 5889887553

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.76  E-value=2.4e-18  Score=160.47  Aligned_cols=86  Identities=21%  Similarity=0.406  Sum_probs=78.4

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741           31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~  110 (437)
                      .++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++ +|.|+|+++|++. .+.. +|++++|++
T Consensus       122 ~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~~-~d~v~~l~~  198 (207)
T cd03369         122 GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDA  198 (207)
T ss_pred             CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHhh-CCEEEEEEC
Confidence            456899999999999999999999999999999999999999999999985 4899999999975 4544 899999999


Q ss_pred             CeEEEeeCh
Q 013741          111 GETIYFGDA  119 (437)
Q Consensus       111 G~~v~~G~~  119 (437)
                      |+++..|++
T Consensus       199 g~i~~~g~~  207 (207)
T cd03369         199 GEVKEYDHP  207 (207)
T ss_pred             CEEEecCCC
Confidence            999988763

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.76  E-value=3.9e-18  Score=182.72  Aligned_cols=113  Identities=26%  Similarity=0.392  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      ++++++.++..|+.+.       .||.+|+ ..+.||||||||+++||+++++|++++||||||+||+.++..+.+.|++
T Consensus       443 ~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~  521 (576)
T TIGR02204       443 DEEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALET  521 (576)
T ss_pred             HHHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH
Confidence            3567777777776532       3566665 3567999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +. +++|+|+++|+++  ....+|+++.|++|+++..|+.++..
T Consensus       522 ~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~l~  562 (576)
T TIGR02204       522 LM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAELI  562 (576)
T ss_pred             Hh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHHHH
Confidence            85 4799999999984  46779999999999999999987653

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=2.7e-18  Score=182.15  Aligned_cols=108  Identities=19%  Similarity=0.280  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      +++++++++.+|+. +..|..+     ..||||||||++||++++.+|++|+|||||+|||+.++..+.+.|+++   +.
T Consensus       415 ~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~  486 (530)
T PRK15064        415 EQAVRGTLGRLLFSQDDIKKSV-----KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EG  486 (530)
T ss_pred             HHHHHHHHHHcCCChhHhcCcc-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CC
Confidence            45788999999994 5666655     469999999999999999999999999999999999999999999886   35


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChhHHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKMAV  123 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~~~~  123 (437)
                      |||+++|++. .+.+++|++++|++|+++ +.|++++..
T Consensus       487 tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~  524 (530)
T PRK15064        487 TLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEEYL  524 (530)
T ss_pred             EEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence            9999999974 788899999999999998 889887543

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.76  E-value=2.3e-18  Score=156.90  Aligned_cols=77  Identities=34%  Similarity=0.515  Sum_probs=73.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741           35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        35 lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~  112 (437)
                      ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++|+
T Consensus       101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~  178 (178)
T cd03229         101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK  178 (178)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence            9999999999999999999999999999999999999999999999987 899999999974 6777899999999885

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.76  E-value=5.9e-18  Score=151.48  Aligned_cols=119  Identities=23%  Similarity=0.374  Sum_probs=105.1

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +++.++.+++.+.+...||++..+..+     -.|||||||||.||++|+.+|++|+||||++.||..++.++.++|-++
T Consensus       104 i~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldl  178 (259)
T COG4525         104 IEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDL  178 (259)
T ss_pred             CCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHH
Confidence            467889999999999999998776655     579999999999999999999999999999999999999999998888


Q ss_pred             Hh-cCCEEEEEecCCchHHHhhcCeEEEEe--CCeEEEeeChhHHHHH
Q 013741           81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLS--NGETIYFGDAKMAVKF  125 (437)
Q Consensus        81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~--~G~~v~~G~~~~~~~~  125 (437)
                      .+ .|+.+++++|+.. |..-+.+++++|+  .||++..-+++-...|
T Consensus       179 w~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~df~rR~  225 (259)
T COG4525         179 WQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLDFARRY  225 (259)
T ss_pred             HHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence            76 7999999999975 6667899999998  6899988777755444

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=4.6e-18  Score=172.55  Aligned_cols=113  Identities=30%  Similarity=0.467  Sum_probs=95.9

Q ss_pred             HHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQ-------ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         8 ~~v~~~l~~l~L~-------~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +.|-++.+..|+.       +-.+|.+|+ ..+-|||||||||+++|+++.||+|+++|||||.||+.+..++++.+++ 
T Consensus       455 eeV~e~~k~a~~hd~i~~l~~GY~T~VGe-rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-  532 (591)
T KOG0057|consen  455 EEVVEACKRAGLHDVISRLPDGYQTLVGE-RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-  532 (591)
T ss_pred             HHHHHHHHHcCcHHHHHhccccchhhHhh-cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-
Confidence            3455555555543       345566775 4456999999999999999999999999999999999999999999999 


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      ...|+|+|++.|..  ....-||+|++|++|++...|+-+++..
T Consensus       533 ~~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~  574 (591)
T KOG0057|consen  533 VMSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA  574 (591)
T ss_pred             hcCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence            45789999999985  4677899999999999999999998875

>PRK13409 putative ATPase RIL; Provisional

Probab=99.76  E-value=3.7e-18  Score=182.22  Aligned_cols=104  Identities=25%  Similarity=0.363  Sum_probs=93.4

Q ss_pred             HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEE
Q 013741            9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIV   87 (437)
Q Consensus         9 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tv   87 (437)
                      .++++++.+||.+..|+.++     .|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++ .|.|+
T Consensus       433 ~~~~~L~~l~l~~~~~~~~~-----~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv  507 (590)
T PRK13409        433 YKSEIIKPLQLERLLDKNVK-----DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATA  507 (590)
T ss_pred             HHHHHHHHCCCHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence            57889999999887777664     6999999999999999999999999999999999999999999999987 48999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEEEeeCh
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA  119 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~  119 (437)
                      |+++|++. .+..++||+++|+ |++...|..
T Consensus       508 iivsHD~~-~~~~~aDrvivl~-~~~~~~g~~  537 (590)
T PRK13409        508 LVVDHDIY-MIDYISDRLMVFE-GEPGKHGHA  537 (590)
T ss_pred             EEEeCCHH-HHHHhCCEEEEEc-Ccceeeeec
Confidence            99999964 6888999999996 477777763

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.75  E-value=4.8e-18  Score=154.36  Aligned_cols=85  Identities=25%  Similarity=0.424  Sum_probs=77.2

Q ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741           35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG-RIVVCSIHQPSSHLFYLFDDLLLLSNGET  113 (437)
Q Consensus        35 lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g-~tvi~t~hqp~~~i~~~fd~v~~L~~G~~  113 (437)
                      ||||||||++||++++.+|++++|||||+|||+.++..+.+.++++++++ .|+|+++|++ ..+.+++|++++|+++-.
T Consensus        72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~  150 (177)
T cd03222          72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPG  150 (177)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCc
Confidence            99999999999999999999999999999999999999999999998765 8999999997 467788999999998776


Q ss_pred             EEe--eChh
Q 013741          114 IYF--GDAK  120 (437)
Q Consensus       114 v~~--G~~~  120 (437)
                      +|.  |++.
T Consensus       151 ~~~~~~~~~  159 (177)
T cd03222         151 VYGIASQPK  159 (177)
T ss_pred             cceeccCCc
Confidence            665  6554

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.75  E-value=4.6e-18  Score=157.54  Aligned_cols=92  Identities=25%  Similarity=0.419  Sum_probs=81.1

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      ++++++++.+||.+..++.++     .||||||||++||++++.+|++++|||||+|||..++..+.+.|++++++|.|+
T Consensus       106 ~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti  180 (198)
T TIGR01189       106 RTIEDALAAVGLTGFEDLPAA-----QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIV  180 (198)
T ss_pred             HHHHHHHHHcCCHHHhcCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence            467889999999887776654     699999999999999999999999999999999999999999999998889999


Q ss_pred             EEEecCCchHHHhhcCeEEE
Q 013741           88 VCSIHQPSSHLFYLFDDLLL  107 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~  107 (437)
                      |+++|++..   -.+|+++.
T Consensus       181 i~~sH~~~~---~~~~~~~~  197 (198)
T TIGR01189       181 LLTTHQDLG---LVEARELR  197 (198)
T ss_pred             EEEEccccc---ccceEEee
Confidence            999999853   23566654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.75  E-value=5.9e-18  Score=180.42  Aligned_cols=105  Identities=28%  Similarity=0.389  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      .++++++++.+||.+ .+..+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.   .|
T Consensus       142 ~~~~~~~l~~~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~t  212 (556)
T PRK11819        142 DSQLEIAMDALRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GT  212 (556)
T ss_pred             HHHHHHHHHhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---Ce
Confidence            457888999999953 55555     4699999999999999999999999999999999999999999999873   59


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChhH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKM  121 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~~  121 (437)
                      ||+++|++ ..+.+.+|++++|++|+++ |.|+.++
T Consensus       213 viiisHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~  247 (556)
T PRK11819        213 VVAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSS  247 (556)
T ss_pred             EEEEeCCH-HHHHhhcCeEEEEeCCEEEEecCCHHH
Confidence            99999997 4688899999999999986 8888764

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=4.6e-18  Score=177.96  Aligned_cols=103  Identities=27%  Similarity=0.440  Sum_probs=92.5

Q ss_pred             CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Q 013741           18 GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH   97 (437)
Q Consensus        18 ~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~   97 (437)
                      ++.+-.||.||.+ ...||||||||++|||||++||.||+|||.||.||+.+...+.+.|.++.++ +|||++.|..+  
T Consensus       589 ~~p~gY~T~VGEk-G~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIAHRLS--  664 (716)
T KOG0058|consen  589 NFPDGYNTVVGEK-GSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIAHRLS--  664 (716)
T ss_pred             hCccccccccCCc-cccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEehhhh--
Confidence            5667799999963 3469999999999999999999999999999999999999999999987765 99999999965  


Q ss_pred             HHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           98 LFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        98 i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      ..+.+|+|+++++|+++..|+-+|..+
T Consensus       665 TV~~Ad~Ivvi~~G~V~E~G~h~eLl~  691 (716)
T KOG0058|consen  665 TVRHADQIVVIDKGRVVEMGTHDELLS  691 (716)
T ss_pred             HhhhccEEEEEcCCeEEecccHHHHhh
Confidence            567799999999999999998887754

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.75  E-value=6.7e-18  Score=157.59  Aligned_cols=95  Identities=24%  Similarity=0.369  Sum_probs=83.8

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      ++++++++.+||.+..+..+     +.||||||||++||++++.+|++++|||||+|||+.+..++.+.|++++++|+|+
T Consensus       106 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti  180 (207)
T PRK13539        106 LDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIV  180 (207)
T ss_pred             HHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEE
Confidence            45889999999987666655     4699999999999999999999999999999999999999999999998889999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeC
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~  110 (437)
                      |+++|++. ++..  |+++.+..
T Consensus       181 ii~sH~~~-~~~~--~~~~~~~~  200 (207)
T PRK13539        181 IAATHIPL-GLPG--ARELDLGP  200 (207)
T ss_pred             EEEeCCch-hhcc--CcEEeecC
Confidence            99999974 4554  88877743

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.75  E-value=1.5e-17  Score=162.35  Aligned_cols=90  Identities=19%  Similarity=0.291  Sum_probs=79.8

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741           31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVL-KCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS  109 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l-~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~  109 (437)
                      ..+.||||||||+.||++|+.+|++++|||||+|||+.++..+.+.+ ++++ ++.|||+++|++. .+ ..+|++++|+
T Consensus       156 ~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~  232 (282)
T cd03291         156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILH  232 (282)
T ss_pred             CCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEEE
Confidence            34689999999999999999999999999999999999999999864 5554 4789999999976 34 5799999999


Q ss_pred             CCeEEEeeChhHHH
Q 013741          110 NGETIYFGDAKMAV  123 (437)
Q Consensus       110 ~G~~v~~G~~~~~~  123 (437)
                      +|++++.|+++++.
T Consensus       233 ~G~i~~~g~~~~~~  246 (282)
T cd03291         233 EGSSYFYGTFSELQ  246 (282)
T ss_pred             CCEEEEECCHHHHH
Confidence            99999999988764

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.74  E-value=6.9e-18  Score=195.80  Aligned_cols=113  Identities=24%  Similarity=0.370  Sum_probs=96.0

Q ss_pred             HHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQ-------ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         8 ~~v~~~l~~l~L~-------~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +.++++++..++.       +-.||.+|. ....||||||||++|||+|+++|+||+||||||+||+.+...|.+.|+++
T Consensus      1326 eeI~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~ 1404 (1466)
T PTZ00265       1326 EDVKRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDI 1404 (1466)
T ss_pred             HHHHHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHH
Confidence            3466666665543       445899985 55679999999999999999999999999999999999999999999998


Q ss_pred             Hh-cCCEEEEEecCCchHHHhhcCeEEEEeC----CeEE-EeeChhHHH
Q 013741           81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLSN----GETI-YFGDAKMAV  123 (437)
Q Consensus        81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~----G~~v-~~G~~~~~~  123 (437)
                      ++ +++|+|+++|+++  ..+.+|+|++|++    |+++ ..|+.+++.
T Consensus      1405 ~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265       1405 KDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred             hccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence            73 6899999999984  4567999999998    9955 899988775

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=8.8e-18  Score=181.45  Aligned_cols=108  Identities=28%  Similarity=0.384  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      .++++++++.+++. +..+++++     .|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++  .| 
T Consensus       407 ~~~~~~~L~~~~l~~~~~~~~~~-----~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-  478 (638)
T PRK10636        407 EQKLRDYLGGFGFQGDKVTEETR-----RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-  478 (638)
T ss_pred             HHHHHHHHHHcCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-
Confidence            45788999999996 35666665     69999999999999999999999999999999999999999999987  34 


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChhHHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKMAV  123 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~~~~  123 (437)
                      |||+++|++ ..+.++||++++|++|+++ |.|+.++..
T Consensus       479 tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  516 (638)
T PRK10636        479 ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQ  516 (638)
T ss_pred             eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence            999999996 5788999999999999997 889888653

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.74  E-value=9.9e-18  Score=181.07  Aligned_cols=106  Identities=22%  Similarity=0.367  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            6 INDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      .+++++++++.+|+. +..+..++     .|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++   +
T Consensus       125 ~~~~~~~~L~~lgl~~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~  196 (638)
T PRK10636        125 IRSRAASLLHGLGFSNEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---Q  196 (638)
T ss_pred             hHHHHHHHHHhCCCCchhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---C
Confidence            345788999999997 46676665     59999999999999999999999999999999999999999998875   4


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChh
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAK  120 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~  120 (437)
                      .|||+++|++ ..+.+++|++++|++|++. |.|+.+
T Consensus       197 ~tviivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~  232 (638)
T PRK10636        197 GTLILISHDR-DFLDPIVDKIIHIEQQSLFEYTGNYS  232 (638)
T ss_pred             CeEEEEeCCH-HHHHHhcCEEEEEeCCEEEEecCCHH
Confidence            6999999996 4788999999999999996 677665

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.74  E-value=1.2e-17  Score=157.04  Aligned_cols=101  Identities=22%  Similarity=0.302  Sum_probs=82.5

Q ss_pred             HHHHHHHHcCCcccccc-------cccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH--HHHH
Q 013741            9 IVEETIIKMGLQACAET-------KIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQ--VLKC   79 (437)
Q Consensus         9 ~v~~~l~~l~L~~~~~~-------~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~--~l~~   79 (437)
                      +.+++++.++|.+..+.       .. +..+..||||||||++||++++.+|++++|||||+|||+.++..+++  .++.
T Consensus       109 ~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~  187 (218)
T cd03290         109 RYKAVTDACSLQPDIDLLPFGDQTEI-GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKF  187 (218)
T ss_pred             HHHHHHHHhCcHHHHHhCcCccccCc-ccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence            34566777777554321       12 22467899999999999999999999999999999999999999998  6777


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~  112 (437)
                      +++.|.|+|+++|++. .+ ..+|++++|++|+
T Consensus       188 ~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~  218 (218)
T cd03290         188 LQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS  218 (218)
T ss_pred             HhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence            7667899999999985 45 5699999999884

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.74  E-value=1.2e-17  Score=177.85  Aligned_cols=105  Identities=27%  Similarity=0.355  Sum_probs=90.0

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      ++++++++.+|+.. .++.+     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++   +.||
T Consensus       141 ~~~~~~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tv  211 (552)
T TIGR03719       141 RKLEIAMDALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTV  211 (552)
T ss_pred             HHHHHHHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeE
Confidence            45677788888843 44444     569999999999999999999999999999999999999999999876   3599


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEE-EeeChhHH
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKMA  122 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~~~  122 (437)
                      |+++|++. .+...+|++++|++|+++ +.|+.++.
T Consensus       212 IiisHd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~~  246 (552)
T TIGR03719       212 VAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSW  246 (552)
T ss_pred             EEEeCCHH-HHHhhcCeEEEEECCEEEEecCCHHHH
Confidence            99999974 688899999999999976 78887754

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.74  E-value=1.3e-17  Score=155.27  Aligned_cols=80  Identities=24%  Similarity=0.420  Sum_probs=71.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741           31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQ-VLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS  109 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~  109 (437)
                      ..+.||||||||++||++|+.+|++++|||||+|||+.++..+.+ .+++++++|+|||+++|++. .+.. +|++++|+
T Consensus       124 ~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~  201 (204)
T cd03250         124 KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLD  201 (204)
T ss_pred             CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEe
Confidence            457899999999999999999999999999999999999999998 56777667899999999975 4555 99999999


Q ss_pred             CCe
Q 013741          110 NGE  112 (437)
Q Consensus       110 ~G~  112 (437)
                      +|+
T Consensus       202 ~G~  204 (204)
T cd03250         202 NGR  204 (204)
T ss_pred             CCC
Confidence            985

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.74  E-value=6.3e-18  Score=186.15  Aligned_cols=104  Identities=32%  Similarity=0.442  Sum_probs=93.8

Q ss_pred             cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 013741           17 MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS   96 (437)
Q Consensus        17 l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~   96 (437)
                      .+|.+-.||.+|+. ...||||||||++||||+++||+||+|||.||.||+.+.+.+.+.|.+. ..|+|+|++.|+++ 
T Consensus      1110 ~sLP~GyDT~vGer-G~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a-~~gRT~IvIAHRLS- 1186 (1228)
T KOG0055|consen 1110 SSLPQGYDTRVGER-GVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA-MEGRTTIVIAHRLS- 1186 (1228)
T ss_pred             hcCcCcccCccCcc-cCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh-hcCCcEEEEecchh-
Confidence            35778889999974 4469999999999999999999999999999999999999999999985 46899999999986 


Q ss_pred             HHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           97 HLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        97 ~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                       ..+.+|.+.++++|++++.|+-+++.+
T Consensus      1187 -TIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1187 -TIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred             -hhhcCCEEEEEECCEEEecccHHHHHh
Confidence             456699999999999999999998875

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.74  E-value=1.8e-17  Score=176.78  Aligned_cols=109  Identities=21%  Similarity=0.280  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHcCCccccccc-ccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhc
Q 013741            6 INDIVEETIIKMGLQACAETK-IGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLK-CIALD   83 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~-vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~-~l~~~   83 (437)
                      .++++++.++.+++.+..+.. -|-.....||||||||++|||+++.+|++++|||||++||+.+...+.+.+. .+..+
T Consensus       441 ~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~  520 (555)
T TIGR01194       441 SLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQ  520 (555)
T ss_pred             hHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC
Confidence            345678899999987654332 1222346799999999999999999999999999999999999999998654 56567


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYF  116 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~  116 (437)
                      |+|+|+++|+++  ..+.+|++++|++|+++..
T Consensus       521 ~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~  551 (555)
T TIGR01194       521 GKTIIIISHDDQ--YFELADQIIKLAAGCIVKD  551 (555)
T ss_pred             CCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence            899999999974  5678999999999998754

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.74  E-value=2e-17  Score=176.13  Aligned_cols=106  Identities=25%  Similarity=0.279  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHcCCcccccccccCc--ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741            7 NDIVEETIIKMGLQACAETKIGNW--HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D   83 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~--~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~   83 (437)
                      ++.+++.++.+++.+..+.  ++.  ....||||||||++|||+++++|++++|||||+|||+.+...+.+.|.+..+ .
T Consensus       422 ~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~  499 (547)
T PRK10522        422 PALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEM  499 (547)
T ss_pred             HHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            4567888999998765432  221  1357999999999999999999999999999999999999999999987654 5


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYF  116 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~  116 (437)
                      |+|+|+++|+++  ..+.+|++++|++|+++..
T Consensus       500 ~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~  530 (547)
T PRK10522        500 GKTIFAISHDDH--YFIHADRLLEMRNGQLSEL  530 (547)
T ss_pred             CCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence            899999999974  5678999999999999866

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.74  E-value=2.2e-17  Score=169.11  Aligned_cols=112  Identities=19%  Similarity=0.366  Sum_probs=103.9

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      .+++.+++.+++|+.+|+....++++++     ||+||||.|.||+++..++++++|||||+.|+...+..+.+.+++|+
T Consensus       118 d~~~m~~~A~~~l~~lg~~~~~~~~v~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk  192 (500)
T COG1129         118 DRKAMRRRARELLARLGLDIDPDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK  192 (500)
T ss_pred             CHHHHHHHHHHHHHHcCCCCChhhhhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence            4566778999999999997557888874     99999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeCh
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA  119 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~  119 (437)
                      ++|.++|.++|.. .|++++|||+.+|.+|+.+-.++.
T Consensus       193 ~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~~  229 (500)
T COG1129         193 AQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRPT  229 (500)
T ss_pred             hCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeeccc
Confidence            9999999999996 689999999999999999998883

>PRK13409 putative ATPase RIL; Provisional

Probab=99.74  E-value=1.2e-17  Score=178.39  Aligned_cols=98  Identities=27%  Similarity=0.438  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      +++++++++.+||.+..|+.++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |.|
T Consensus       190 ~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~t  263 (590)
T PRK13409        190 RGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKY  263 (590)
T ss_pred             HHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCE
Confidence            4578999999999988887775     5999999999999999999999999999999999999999999999988 999


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCC
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNG  111 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G  111 (437)
                      ||+++|++. .+..++|++++|++|
T Consensus       264 vIivsHd~~-~l~~~~D~v~vl~~~  287 (590)
T PRK13409        264 VLVVEHDLA-VLDYLADNVHIAYGE  287 (590)
T ss_pred             EEEEeCCHH-HHHHhCCEEEEEeCC
Confidence            999999974 688999999999864

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.73  E-value=1.6e-17  Score=183.61  Aligned_cols=111  Identities=23%  Similarity=0.366  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            5 EINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p--~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      +..++++ .++.+||.+. .|+.++     .|||||||||.||++|..+|  ++++|||||+|||+..+..+.+.|++++
T Consensus       465 ~i~~rl~-~L~~vGL~~l~l~r~~~-----~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~  538 (943)
T PRK00349        465 EIRERLK-FLVDVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLR  538 (943)
T ss_pred             HHHHHHH-HhhccccCCCCCCCchh-----hCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHH
Confidence            3445564 6888999865 566654     69999999999999999997  9999999999999999999999999999


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHH
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~  123 (437)
                      +.|.|||+++|++. ++ ..+|++++|      .+|++++.|+++++.
T Consensus       539 ~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~  584 (943)
T PRK00349        539 DLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM  584 (943)
T ss_pred             hCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence            88999999999975 45 469999999      899999999998763

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.73  E-value=1e-17  Score=151.63  Aligned_cols=75  Identities=31%  Similarity=0.623  Sum_probs=70.0

Q ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741           35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        35 lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~  112 (437)
                      ||||||||++||++++.+|++++|||||+|||+.++.++.+.|+++++ ++|+|+++|++. ++.. +|++++|++|+
T Consensus        97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~  171 (171)
T cd03228          97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR  171 (171)
T ss_pred             hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence            999999999999999999999999999999999999999999999964 699999999975 5666 99999999885

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.73  E-value=2.3e-17  Score=178.39  Aligned_cols=104  Identities=24%  Similarity=0.439  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      +++++++++.+|+..  +..     +..|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.   .|
T Consensus       136 ~~~~~~~l~~lgl~~--~~~-----~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~t  205 (635)
T PRK11147        136 ENRINEVLAQLGLDP--DAA-----LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GS  205 (635)
T ss_pred             HHHHHHHHHhCCCCC--CCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CE
Confidence            457889999999963  444     45799999999999999999999999999999999999999999999873   59


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChhH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKM  121 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~~  121 (437)
                      ||+++|++ ..+.+.+|+++.|++|+++ |.|+.++
T Consensus       206 vlivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~~  240 (635)
T PRK11147        206 IIFISHDR-SFIRNMATRIVDLDRGKLVSYPGNYDQ  240 (635)
T ss_pred             EEEEeCCH-HHHHHhcCeEEEEECCEEEEecCCHHH
Confidence            99999996 4688899999999999997 5687653

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.73  E-value=1.1e-17  Score=168.27  Aligned_cols=107  Identities=26%  Similarity=0.438  Sum_probs=98.6

Q ss_pred             cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 013741           17 MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS   96 (437)
Q Consensus        17 l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~   96 (437)
                      +.|.+-.||.||+ ...+||||||||+.+||+|-.||.+++||||-|+||......+.+.|.+++++|.|+|+++|.|+ 
T Consensus       456 l~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs-  533 (580)
T COG4618         456 LRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS-  533 (580)
T ss_pred             HhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH-
Confidence            3456678999996 45689999999999999999999999999999999999999999999999999999999999986 


Q ss_pred             HHHhhcCeEEEEeCCeEEEeeChhHHHHHH
Q 013741           97 HLFYLFDDLLLLSNGETIYFGDAKMAVKFF  126 (437)
Q Consensus        97 ~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f  126 (437)
                       +....|+|++|++|++-.+|+.+|+....
T Consensus       534 -~L~~~Dkilvl~~G~~~~FG~r~eVLa~~  562 (580)
T COG4618         534 -ALASVDKILVLQDGRIAAFGPREEVLAKV  562 (580)
T ss_pred             -HHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence             78889999999999999999999988754

>PLN03073 ABC transporter F family; Provisional

Probab=99.72  E-value=3.4e-17  Score=178.11  Aligned_cols=109  Identities=25%  Similarity=0.349  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            7 NDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      .++++++++.+||.+ ..+..+     +.|||||||||+||++++.+|++|+|||||+|||..++..+.+.|++.  +| 
T Consensus       604 ~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-  675 (718)
T PLN03073        604 EQKLRAHLGSFGVTGNLALQPM-----YTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-  675 (718)
T ss_pred             HHHHHHHHHHCCCChHHhcCCc-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-
Confidence            356788999999973 455544     579999999999999999999999999999999999999998888764  34 


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChhHHHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKMAVK  124 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~~~~~  124 (437)
                      |||+++|++. .+..++|++++|.+|+++ +.|+.++..+
T Consensus       676 tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~~~  714 (718)
T PLN03073        676 GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDYKK  714 (718)
T ss_pred             EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence            9999999974 688899999999999998 7888775443

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.72  E-value=2.6e-17  Score=191.10  Aligned_cols=101  Identities=30%  Similarity=0.470  Sum_probs=88.4

Q ss_pred             HHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +.+.++++..++.+.       .||.+|. ....||||||||++|||+|+++|+||+|||||++||+.+...+.+.|+++
T Consensus       547 ~~v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~  625 (1466)
T PTZ00265        547 SEVVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNL  625 (1466)
T ss_pred             HHHHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHH
Confidence            567778888877654       4677765 46689999999999999999999999999999999999999999999999


Q ss_pred             Hh-cCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741           81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNG  111 (437)
Q Consensus        81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G  111 (437)
                      ++ +|+|+|+++|+++ .+ +.+|++++|++|
T Consensus       626 ~~~~g~TvIiIsHrls-~i-~~aD~Iivl~~g  655 (1466)
T PTZ00265        626 KGNENRITIIIAHRLS-TI-RYANTIFVLSNR  655 (1466)
T ss_pred             hhcCCCEEEEEeCCHH-HH-HhCCEEEEEeCC
Confidence            86 6899999999985 34 789999999986

>PLN03232 ABC transporter C family member; Provisional

Probab=99.72  E-value=3.5e-17  Score=191.17  Aligned_cols=113  Identities=16%  Similarity=0.297  Sum_probs=96.0

Q ss_pred             HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         8 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +.+.++++..+|.+       -.||.+|+ ....||||||||++|||+|+++|+||+||||||+||+.+...+.+.|++.
T Consensus      1339 eei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~ 1417 (1495)
T PLN03232       1339 ADLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREE 1417 (1495)
T ss_pred             HHHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            45666777766643       34677765 44579999999999999999999999999999999999999999999986


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      . +++|+|+++|+++ .+ ..+|+|++|++|+++..|+++++.+
T Consensus      1418 ~-~~~TvI~IAHRl~-ti-~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232       1418 F-KSCTMLVIAHRLN-TI-IDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred             c-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence            4 5799999999985 34 4599999999999999999998753

>PLN03073 ABC transporter F family; Provisional

Probab=99.71  E-value=5.4e-17  Score=176.53  Aligned_cols=106  Identities=21%  Similarity=0.342  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      +++++++++.+||. +..++.+     ..|||||||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++   +.
T Consensus       321 ~~r~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~  392 (718)
T PLN03073        321 EARAASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PK  392 (718)
T ss_pred             HHHHHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CC
Confidence            34566677777775 3345444     469999999999999999999999999999999999999999999886   67


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChhH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKM  121 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~~  121 (437)
                      |+|+++|+. ..+.+.||++++|++|++. |.|+.++
T Consensus       393 tviivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~~  428 (718)
T PLN03073        393 TFIVVSHAR-EFLNTVVTDILHLHGQKLVTYKGDYDT  428 (718)
T ss_pred             EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence            999999995 5688899999999999996 6777653

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.71  E-value=4.7e-17  Score=179.64  Aligned_cols=103  Identities=23%  Similarity=0.341  Sum_probs=90.9

Q ss_pred             HHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Q 013741           14 IIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCS   90 (437)
Q Consensus        14 l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p--~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t   90 (437)
                      +..+||... .+..     +..|||||+||+.||++|+.+|  ++++|||||+|||+.++..+.+.|++++++|.|||++
T Consensus       471 L~~vgL~~l~l~r~-----~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvV  545 (924)
T TIGR00630       471 LIDVGLDYLTLSRA-----AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVV  545 (924)
T ss_pred             HhhccccccccCCC-----cCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            667787654 3444     4579999999999999999986  8999999999999999999999999999899999999


Q ss_pred             ecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHH
Q 013741           91 IHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV  123 (437)
Q Consensus        91 ~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~  123 (437)
                      +|++. .+ ..+|++++|      ++|++++.|+++++.
T Consensus       546 eHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~  582 (924)
T TIGR00630       546 EHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL  582 (924)
T ss_pred             ECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence            99974 45 589999999      899999999998763

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.71  E-value=3.4e-17  Score=151.94  Aligned_cols=91  Identities=23%  Similarity=0.243  Sum_probs=80.0

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      ++++++++.+++.+..+..++     .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|.|+
T Consensus       106 ~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~ti  180 (200)
T PRK13540        106 VGITELCRLFSLEHLIDYPCG-----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV  180 (200)
T ss_pred             HHHHHHHHHcCCchhhhCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEE
Confidence            468899999999876666554     699999999999999999999999999999999999999999999998889999


Q ss_pred             EEEecCCchHHHhhcCeE
Q 013741           88 VCSIHQPSSHLFYLFDDL  105 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v  105 (437)
                      |+++|++.  ..+.+|..
T Consensus       181 ii~sh~~~--~~~~~d~~  196 (200)
T PRK13540        181 LLTSHQDL--PLNKADYE  196 (200)
T ss_pred             EEEeCCch--hccccchh
Confidence            99999975  34556643

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.71  E-value=3.1e-17  Score=146.89  Aligned_cols=112  Identities=23%  Similarity=0.348  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +-+++++++|...||.+.+|...+.     ||.||||++.||+-++.+|++|+||||++|+-.....+.-++|+.++.+ 
T Consensus       123 ~e~~ride~La~igL~~~~~~~A~~-----LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~-  196 (249)
T COG4674         123 EERRRIDELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGK-  196 (249)
T ss_pred             hHHHHHHHHHHHcccchhhhhhhhh-----hccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcC-
Confidence            3456999999999999999988875     9999999999999999999999999999999999999999999999874 


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      .+|+++-|+. ..+-++.|+|.+|++|.+...|+.+++.
T Consensus       197 hsilVVEHDM-~Fvr~~A~~VTVlh~G~VL~EGsld~v~  234 (249)
T COG4674         197 HSILVVEHDM-GFVREIADKVTVLHEGSVLAEGSLDEVQ  234 (249)
T ss_pred             ceEEEEeccH-HHHHHhhheeEEEeccceeecccHHHhh
Confidence            7899999995 6899999999999999999999998774

>PLN03232 ABC transporter C family member; Provisional

Probab=99.71  E-value=4.6e-17  Score=190.24  Aligned_cols=113  Identities=27%  Similarity=0.321  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HH
Q 013741            7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQV-LK   78 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~-l~   78 (437)
                      +++.+++++..+|.+       --+|.||+. ...||||||||++|||++.++|+|++||||||+||+.++.++++. ++
T Consensus       707 ~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~  785 (1495)
T PLN03232        707 SERYWRAIDVTALQHDLDLLPGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMK  785 (1495)
T ss_pred             HHHHHHHHHHhCCHHHHHhCCCCCCceecCC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhh
Confidence            356777777777654       236788864 457999999999999999999999999999999999999999765 44


Q ss_pred             HHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           79 CIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        79 ~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      .+ .+++|+|+++|+++  ....+|+|++|++|+++..|+.++..
T Consensus       786 ~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~  827 (1495)
T PLN03232        786 DE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELS  827 (1495)
T ss_pred             hh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHH
Confidence            43 36899999999985  46779999999999999999988775

>PLN03130 ABC transporter C family member; Provisional

Probab=99.71  E-value=5.7e-17  Score=189.86  Aligned_cols=113  Identities=17%  Similarity=0.300  Sum_probs=96.0

Q ss_pred             HHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQ-------ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         8 ~~v~~~l~~l~L~-------~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +.+.++++..++.       .-.||.+|+ ....||||||||++|||+|+++|+||+||||||+||+.+...+.+.|++.
T Consensus      1342 eei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~ 1420 (1622)
T PLN03130       1342 ADLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREE 1420 (1622)
T ss_pred             HHHHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            4566666666554       345677775 44579999999999999999999999999999999999999999999987


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      . +++|+|++.|.++. +. .+|||++|++|+++..|+++++.+
T Consensus      1421 ~-~~~TvI~IAHRL~t-I~-~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130       1421 F-KSCTMLIIAHRLNT-II-DCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred             C-CCCEEEEEeCChHH-HH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence            5 57999999999853 44 499999999999999999998763

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.71  E-value=4.1e-17  Score=143.59  Aligned_cols=76  Identities=33%  Similarity=0.426  Sum_probs=70.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741           33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~  112 (437)
                      ..||+|||||++||++|+.+|+++++||||+|||+.++..+.+.|+++   ++|+++++|++. ++.+.+|++++|++|+
T Consensus        69 ~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~  144 (144)
T cd03221          69 EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK  144 (144)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence            349999999999999999999999999999999999999999999987   479999999974 6788899999999985

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.70  E-value=5e-17  Score=146.46  Aligned_cols=75  Identities=36%  Similarity=0.493  Sum_probs=69.0

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741           32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG  111 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G  111 (437)
                      .+.||||||||++||++++.+|++++|||||+|||..++..+.+.|+++   ++|+|+++|++.  ....+|++++|++|
T Consensus        89 ~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~  163 (166)
T cd03223          89 DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE  163 (166)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence            4679999999999999999999999999999999999999999999986   589999999975  35789999999865

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.70  E-value=1.1e-16  Score=170.54  Aligned_cols=103  Identities=22%  Similarity=0.304  Sum_probs=88.3

Q ss_pred             HHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            9 IVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         9 ~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      +++++++.+||.+ ..+..+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.  | ||
T Consensus       422 ~~~~~l~~~~l~~~~~~~~~-----~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~v  493 (552)
T TIGR03719       422 PSRAYVGRFNFKGSDQQKKV-----GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CA  493 (552)
T ss_pred             HHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eE
Confidence            4567899999964 456555     4699999999999999999999999999999999999999999999873  3 89


Q ss_pred             EEEecCCchHHHhhcCeEEEEeC-CeEE-EeeChh
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSN-GETI-YFGDAK  120 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~-G~~v-~~G~~~  120 (437)
                      |+++|++ ..+.+++|++++|++ |+++ +.|+.+
T Consensus       494 iivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~  527 (552)
T TIGR03719       494 VVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYS  527 (552)
T ss_pred             EEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHH
Confidence            9999997 468889999999986 6776 556654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.70  E-value=9.7e-17  Score=187.79  Aligned_cols=113  Identities=16%  Similarity=0.270  Sum_probs=96.3

Q ss_pred             HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         8 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +.+.++++..+|.+       -.||.+|. ....||||||||++|||+|+++|+||+||||||+||+.+...+.+.|++.
T Consensus      1389 eei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~ 1467 (1522)
T TIGR00957      1389 EEVWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQ 1467 (1522)
T ss_pred             HHHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            45666777777653       35777765 44579999999999999999999999999999999999999999999886


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      . +++|+|++.|+++  ....+|||++|++|+++..|+++++.+
T Consensus      1468 ~-~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957      1468 F-EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred             c-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            4 5799999999985  344589999999999999999998764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.70  E-value=1.3e-16  Score=170.20  Aligned_cols=104  Identities=22%  Similarity=0.291  Sum_probs=88.8

Q ss_pred             HHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            9 IVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         9 ~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      .++++++.+||.+ ..+..+     ..|||||||||+||++++.+|++|+|||||+|||+.++..+.+.|+++.  | ||
T Consensus       424 ~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tv  495 (556)
T PRK11819        424 PSRAYVGRFNFKGGDQQKKV-----GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CA  495 (556)
T ss_pred             HHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eE
Confidence            4567899999963 456555     4699999999999999999999999999999999999999999999873  4 89


Q ss_pred             EEEecCCchHHHhhcCeEEEEeC-CeEE-EeeChhH
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSN-GETI-YFGDAKM  121 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~-G~~v-~~G~~~~  121 (437)
                      |+++|++. .+..++|++++|++ |++. +.|+.++
T Consensus       496 i~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~  530 (556)
T PRK11819        496 VVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQE  530 (556)
T ss_pred             EEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHHH
Confidence            99999974 78899999999985 7876 5666553

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.69  E-value=2.2e-16  Score=146.75  Aligned_cols=123  Identities=24%  Similarity=0.285  Sum_probs=116.0

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      ++++|.+++++++++.-+|.+..|.++.     .+|.||+-|++++++...+|+||++||-.+-.|+.-+.+-.+.++++
T Consensus       119 ~~~~ei~~~~~eIieFaELG~fi~~Pvk-----tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~  193 (249)
T COG1134         119 LTRKEIDEKVDEIIEFAELGDFIDQPVK-----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL  193 (249)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhCchh-----hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999998874     69999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHHHHHc
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEA  129 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~f~~~  129 (437)
                      .++++|+|+++|++. .+-+.||++++|++|++.+.|+++++.++|++.
T Consensus       194 ~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~  241 (249)
T COG1134         194 VEKNKTIVLVSHDLG-AIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEED  241 (249)
T ss_pred             HHcCCEEEEEECCHH-HHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHh
Confidence            888899999999974 799999999999999999999999999988753

>PLN03130 ABC transporter C family member; Provisional

Probab=99.69  E-value=1.2e-16  Score=187.07  Aligned_cols=113  Identities=25%  Similarity=0.288  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHH
Q 013741            7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQ-VLK   78 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~-~l~   78 (437)
                      +++.+++++..+|.+.       .+|.+|+. ...||||||||++|||++.++|+|++||||||+||+.++.++.+ .++
T Consensus       707 ~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~  785 (1622)
T PLN03130        707 PERYERAIDVTALQHDLDLLPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIK  785 (1622)
T ss_pred             HHHHHHHHHHhCcHHHHHhCCCcccccccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhh
Confidence            4577788888777543       36788864 45699999999999999999999999999999999999998875 455


Q ss_pred             HHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           79 CIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        79 ~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      .+. +|+|+|+++|+++  ....+|+|++|++|+++..|+.++..
T Consensus       786 ~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~  827 (1622)
T PLN03130        786 DEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELS  827 (1622)
T ss_pred             HHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence            543 5799999999974  56779999999999999999998875

>PTZ00243 ABC transporter; Provisional

Probab=99.69  E-value=1.4e-16  Score=186.21  Aligned_cols=114  Identities=16%  Similarity=0.266  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQ-PTVLLLDEPTSGLDSASAFFVIQVLK   78 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~-p~ll~lDEPtsgLD~~~~~~i~~~l~   78 (437)
                      ++.+.++++..||.+.       .||.+|. ....||||||||++|||+|+++ |+||+||||||+||+.+...+.+.|+
T Consensus      1412 deeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243       1412 SAEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred             HHHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            3567778888777643       5777875 4457999999999999999996 89999999999999999999999999


Q ss_pred             HHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           79 CIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        79 ~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      +.. +++|+|++.|.++  ....||+|++|++|+++..|+++++.+
T Consensus      1491 ~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243       1491 SAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred             HHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            854 4799999999974  456699999999999999999998753

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.69  E-value=9.8e-17  Score=148.27  Aligned_cols=83  Identities=27%  Similarity=0.278  Sum_probs=75.3

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      ++++++++.+++.+..++.+     +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++.+++|+|+
T Consensus       102 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~ti  176 (195)
T PRK13541        102 ETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIV  176 (195)
T ss_pred             HHHHHHHHHcCCHhhhccCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence            46788899999987776654     4699999999999999999999999999999999999999999998877788999


Q ss_pred             EEEecCCc
Q 013741           88 VCSIHQPS   95 (437)
Q Consensus        88 i~t~hqp~   95 (437)
                      |+++|++.
T Consensus       177 ii~sh~~~  184 (195)
T PRK13541        177 LLSSHLES  184 (195)
T ss_pred             EEEeCCcc
Confidence            99999975

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.68  E-value=1.6e-16  Score=185.47  Aligned_cols=113  Identities=19%  Similarity=0.284  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      ++.+.++++..+|.+       -.||.+|+ ....||||||||++|||+|+++|+||+|||||++||..+...+.+.|++
T Consensus      1320 deei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~ 1398 (1490)
T TIGR01271      1320 DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ 1398 (1490)
T ss_pred             HHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            456778888888753       35777775 4457999999999999999999999999999999999999999999998


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      .. +++|||+++|.++  ....+|+|++|++|+++..|+++++.
T Consensus      1399 ~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271      1399 SF-SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred             Hc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            64 4699999999975  34559999999999999999999875

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.68  E-value=2.3e-16  Score=138.80  Aligned_cols=114  Identities=24%  Similarity=0.373  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~   83 (437)
                      ++++...+++++.++...   .+ +..++.+|||++||+.||+.|++.|++.|+||||.|||..-+..+.+.++.|.. -
T Consensus       126 ~iR~~a~~WL~~VEI~~~---Ri-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l  201 (258)
T COG4107         126 NIRAEAQDWLEEVEIDLD---RI-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL  201 (258)
T ss_pred             hHHHHHHHHHHhcccCcc---cc-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhc
Confidence            345667788888887643   23 346789999999999999999999999999999999999999999999999987 5


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |..+++++|+.. -.--+.||+++|.+|+++..|-.+.+.
T Consensus       202 ~la~viVTHDl~-VarLla~rlmvmk~g~vve~GLTDrvL  240 (258)
T COG4107         202 GLAVVIVTHDLA-VARLLADRLMVMKQGQVVESGLTDRVL  240 (258)
T ss_pred             CceEEEEechhH-HHHHhhhcceeecCCCEeccccccccc
Confidence            899999999964 455568999999999999999887664

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.68  E-value=1.9e-16  Score=141.19  Aligned_cols=77  Identities=36%  Similarity=0.642  Sum_probs=72.4

Q ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741           35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        35 lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~  112 (437)
                      ||||||||++||++++.+|++++|||||+|||..++..+.+.+++++++++|+++++|++. ++...+|+++++++|+
T Consensus        81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~  157 (157)
T cd00267          81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK  157 (157)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence            9999999999999999999999999999999999999999999999887899999999964 6777889999999875

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.68  E-value=1.3e-16  Score=169.30  Aligned_cols=98  Identities=31%  Similarity=0.516  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      ++.+++.++..++.+.       .||.+|+ ....||||||||++|||+++++|++++||||||+||+.+..++.+.|++
T Consensus       425 ~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~  503 (529)
T TIGR02857       425 DAEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRA  503 (529)
T ss_pred             HHHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence            3567777888777543       4777775 4567999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLL  108 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L  108 (437)
                      +. +++|+|+++|+++  ..+.+|++++|
T Consensus       504 ~~-~~~t~i~itH~~~--~~~~~d~i~~l  529 (529)
T TIGR02857       504 LA-QGRTVLLVTHRLA--LAERADRIVVL  529 (529)
T ss_pred             hc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence            75 5799999999984  35779999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.67  E-value=3.6e-16  Score=157.53  Aligned_cols=111  Identities=23%  Similarity=0.393  Sum_probs=103.1

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      +.++.+++++++.+..||.-..|.+|++     ||-||||||.|-.+|..+|++|+|||||+-|-|..+.++++.|++++
T Consensus       113 ~~~~~~~~i~~l~~~yGl~vdp~~~V~d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~  187 (501)
T COG3845         113 DRRQARARIKELSERYGLPVDPDAKVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLA  187 (501)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCccceeec-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence            3556778999999999999888888874     99999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeC
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD  118 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~  118 (437)
                      ++|+|||.++|.. .|+.+.+||+.+|.+|+++-.-+
T Consensus       188 ~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~  223 (501)
T COG3845         188 AEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD  223 (501)
T ss_pred             HCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence            9999999999996 58999999999999999886655

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.67  E-value=2.8e-16  Score=160.97  Aligned_cols=112  Identities=21%  Similarity=0.390  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            3 NDEINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++..++.+++..+.|++... .++     .+..||||.+|||.||+.|.++|++|+|||||.|.|.-+..+|.+++++++
T Consensus       374 ~~~e~~~~~~~~~~l~Ik~~s~~~-----~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA  448 (500)
T COG1129         374 RRKERALAERYIRRLRIKTPSPEQ-----PIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELA  448 (500)
T ss_pred             hHHHHHHHHHHHHhcCcccCCccc-----hhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHH
Confidence            44555688999999998632 223     445799999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChh
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK  120 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~  120 (437)
                      ++|++||+++... .|+..+||||++|++|+++-.=+.+
T Consensus       449 ~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e~~~~  486 (500)
T COG1129         449 AEGKAILMISSEL-PELLGLSDRILVMREGRIVGELDRE  486 (500)
T ss_pred             HCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEEeccc
Confidence            9999999988885 5899999999999999998754443

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.67  E-value=4.2e-16  Score=172.49  Aligned_cols=108  Identities=25%  Similarity=0.340  Sum_probs=95.3

Q ss_pred             HHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            9 IVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         9 ~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p---~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +..+.++.+||.+ ..+..+     +.||||||||+.||++|+.+|   ++++|||||+|||..+...+.+.|+++.++|
T Consensus       809 ~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G  883 (943)
T PRK00349        809 RKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKG  883 (943)
T ss_pred             HHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence            3457888899975 345544     469999999999999999999   9999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV  123 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~  123 (437)
                      .|||+++|++. .+ ..+|+++.|      ++|++++.|+++++.
T Consensus       884 ~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~  926 (943)
T PRK00349        884 NTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA  926 (943)
T ss_pred             CEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence            99999999984 34 679999999      699999999988764

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.67  E-value=4.3e-16  Score=179.56  Aligned_cols=112  Identities=27%  Similarity=0.415  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHH---hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            4 DEINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEIL---TQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~---~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      ++..+++ +.++.+||.+. .+..+     ..||||||||+.||++|+   .+|++++|||||+|||..++.++++.|++
T Consensus       784 ~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~  857 (1809)
T PRK00635        784 PSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQS  857 (1809)
T ss_pred             HHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            3445566 48899999875 56554     469999999999999998   69999999999999999999999999999


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEe------CCeEEEeeChhHHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLS------NGETIYFGDAKMAV  123 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~------~G~~v~~G~~~~~~  123 (437)
                      ++++|.|||+++|++. .+ +.+|++++|.      +|+++..|+++++.
T Consensus       858 L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~  905 (1809)
T PRK00635        858 LTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELI  905 (1809)
T ss_pred             HHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence            9989999999999975 45 8999999996      79999999998764

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=2.4e-16  Score=155.64  Aligned_cols=102  Identities=30%  Similarity=0.501  Sum_probs=90.3

Q ss_pred             CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHH
Q 013741           19 LQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHL   98 (437)
Q Consensus        19 L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i   98 (437)
                      |-+-.||.||.... .|||||||||+|||.++.+|+||++||.||.||+.+..++...|++++ .|+|.+++.|..+. +
T Consensus       385 lP~gy~t~Vgergl-klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i  461 (497)
T COG5265         385 LPEGYDTGVGERGL-KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I  461 (497)
T ss_pred             Cchhhhcccchhee-eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c
Confidence            45567899997544 389999999999999999999999999999999999999999999987 57899999999763 5


Q ss_pred             HhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           99 FYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        99 ~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      .+ +|.+++|++|+++..|.-+++..
T Consensus       462 ~~-adeiivl~~g~i~erg~h~~ll~  486 (497)
T COG5265         462 ID-ADEIIVLDNGRIVERGTHEELLA  486 (497)
T ss_pred             cC-CceEEEeeCCEEEecCcHHHHHH
Confidence            54 79999999999999999887764

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.66  E-value=6.4e-16  Score=178.11  Aligned_cols=102  Identities=25%  Similarity=0.440  Sum_probs=91.1

Q ss_pred             HHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Q 013741           14 IIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCS   90 (437)
Q Consensus        14 l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p--~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t   90 (437)
                      |+.+||++. .|+.+     ..|||||+|||.||++|..+|  ++++|||||+|||+.++..+.+.|++++++|.|||++
T Consensus       460 L~~vGL~~L~ldR~~-----~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvV  534 (1809)
T PRK00635        460 LIDLGLPYLTPERAL-----ATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLV  534 (1809)
T ss_pred             HHhccccCCCCCCch-----hhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            456788765 45555     469999999999999999999  8999999999999999999999999999899999999


Q ss_pred             ecCCchHHHhhcCeEEEEe------CCeEEEeeChhHH
Q 013741           91 IHQPSSHLFYLFDDLLLLS------NGETIYFGDAKMA  122 (437)
Q Consensus        91 ~hqp~~~i~~~fd~v~~L~------~G~~v~~G~~~~~  122 (437)
                      +|++.  +.+.+|++++|.      +|++++.|++++.
T Consensus       535 eHd~~--vi~~aDrVi~L~pGag~~gG~Iv~~G~~~ei  570 (1809)
T PRK00635        535 EHDEQ--MISLADRIIDIGPGAGIFGGEVLFNGSPREF  570 (1809)
T ss_pred             eCcHH--HHHhCCEEEEEcCCcccCCCEEEEecCHHHH
Confidence            99975  678999999996      7899999998765

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.66  E-value=2.7e-16  Score=157.18  Aligned_cols=104  Identities=30%  Similarity=0.475  Sum_probs=92.9

Q ss_pred             cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 013741           17 MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS   96 (437)
Q Consensus        17 l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~   96 (437)
                      +++-+-.+|+||....| |||||||||+|||+++.+|.+++|||.||.||..+...+...|.+++. ++|.|++.|..+ 
T Consensus       658 l~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLS-  734 (790)
T KOG0056|consen  658 LQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLS-  734 (790)
T ss_pred             hcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeeh-
Confidence            67778889999975543 899999999999999999999999999999999999999999999986 588888899976 


Q ss_pred             HHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           97 HLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        97 ~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      .+.+ +|.++++++|+++..|.-+|+..
T Consensus       735 Tivn-AD~ILvi~~G~IvErG~HeeLl~  761 (790)
T KOG0056|consen  735 TIVN-ADLILVISNGRIVERGRHEELLK  761 (790)
T ss_pred             heec-ccEEEEEeCCeEeecCcHHHHHh
Confidence            3554 89999999999999999887764

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.65  E-value=5.9e-16  Score=167.49  Aligned_cols=106  Identities=22%  Similarity=0.268  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      .+.+.++++.+++. +..++.++     .|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++   +.
T Consensus       417 ~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~  488 (635)
T PRK11147        417 PRHVLGYLQDFLFHPKRAMTPVK-----ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QG  488 (635)
T ss_pred             HHHHHHHHHhcCCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CC
Confidence            34678889999985 45666664     69999999999999999999999999999999999999999999876   45


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEe-CCeEEE-eeChhH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLS-NGETIY-FGDAKM  121 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~-~G~~v~-~G~~~~  121 (437)
                      |||+++|+. ..+..++|+++++. +|++.. .|+.++
T Consensus       489 tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~  525 (635)
T PRK11147        489 TVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD  525 (635)
T ss_pred             eEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence            999999996 57888999999998 798764 566553

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.65  E-value=9.8e-16  Score=143.66  Aligned_cols=93  Identities=18%  Similarity=0.162  Sum_probs=78.7

Q ss_pred             HHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741           14 IIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILT----------QPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus        14 l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~----------~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..++.+..+..     +..||||||||+++|++++.          +|++++|||||+|||+.++..+.+.|++++++
T Consensus       108 l~~g~l~~~l~~~-----~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~  182 (213)
T cd03279         108 LPQGEFDRFLARP-----VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTE  182 (213)
T ss_pred             hhhcchHHHhcCC-----ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence            3444455444443     45799999999999999985          67899999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~  112 (437)
                      |.|+|+++|++. .+...+|+++++++|.
T Consensus       183 ~~tii~itH~~~-~~~~~~~~i~~~~~~~  210 (213)
T cd03279         183 NRMVGVISHVEE-LKERIPQRLEVIKTPG  210 (213)
T ss_pred             CCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence            999999999974 6778899999999875

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.64  E-value=1.2e-15  Score=168.62  Aligned_cols=107  Identities=24%  Similarity=0.322  Sum_probs=93.2

Q ss_pred             HHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHh---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            9 IVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILT---QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         9 ~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~---~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +..++++.+||... .+..     .+.||||||||+.||++|+.   +|++++|||||+|||+.++..+.+.|+++.++|
T Consensus       807 ~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G  881 (924)
T TIGR00630       807 RKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQG  881 (924)
T ss_pred             HHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence            45578888999752 3443     35799999999999999997   599999999999999999999999999999889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~  122 (437)
                      .|||+++|++. .+ +.+|+++.|      ++|++++.|+++++
T Consensus       882 ~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       882 NTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             CEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence            99999999985 34 679999999      79999999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.64  E-value=7.3e-16  Score=167.17  Aligned_cols=98  Identities=21%  Similarity=0.297  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHcCCccccccccc----CcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            7 NDIVEETIIKMGLQACAETKIG----NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg----~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++++++++.+||.+..+...|    ......||||||||++||++++++|++++|||||+|||+.+...+.+.+++   
T Consensus       551 ~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---  627 (659)
T TIGR00954       551 DKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---  627 (659)
T ss_pred             HHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---
Confidence            4567889999999876655332    113467999999999999999999999999999999999999999998876   


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLS  109 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~  109 (437)
                      .|+|+|+++|+++  ..+.+|++++|+
T Consensus       628 ~~~tvI~isH~~~--~~~~~d~il~l~  652 (659)
T TIGR00954       628 FGITLFSVSHRKS--LWKYHEYLLYMD  652 (659)
T ss_pred             cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence            3899999999985  357899999997

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.64  E-value=9.3e-16  Score=179.58  Aligned_cols=98  Identities=20%  Similarity=0.349  Sum_probs=85.5

Q ss_pred             ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hcCCEEEEEecCCchHHHh
Q 013741           23 AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA--LDGRIVVCSIHQPSSHLFY  100 (437)
Q Consensus        23 ~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~--~~g~tvi~t~hqp~~~i~~  100 (437)
                      .+|.+|. ....||||||||++|||++..+|++++|||||++||+.++..+.+.+.+..  .+|+|+|+++|++.  ...
T Consensus       750 ~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~  826 (1522)
T TIGR00957       750 DRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLP  826 (1522)
T ss_pred             CCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhh
Confidence            3466765 456899999999999999999999999999999999999999999987542  35799999999985  345


Q ss_pred             hcCeEEEEeCCeEEEeeChhHHH
Q 013741          101 LFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus       101 ~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      .+|++++|++|+++..|+.++..
T Consensus       827 ~~D~ii~l~~G~i~~~g~~~~l~  849 (1522)
T TIGR00957       827 QVDVIIVMSGGKISEMGSYQELL  849 (1522)
T ss_pred             hCCEEEEecCCeEEeeCCHHHHH
Confidence            59999999999999999988775

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.64  E-value=1.2e-15  Score=178.31  Aligned_cols=96  Identities=21%  Similarity=0.342  Sum_probs=84.1

Q ss_pred             cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCEEEEEecCCchHHHhhc
Q 013741           24 ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQV-LKCIALDGRIVVCSIHQPSSHLFYLF  102 (437)
Q Consensus        24 ~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~-l~~l~~~g~tvi~t~hqp~~~i~~~f  102 (437)
                      +|.+|. ....||||||||++|||+++.+|++++|||||+|||+.++.++.+. ++++. +|+|+|+++|++. . ...+
T Consensus       539 ~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~-~~~a  614 (1490)
T TIGR01271       539 KTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE-H-LKKA  614 (1490)
T ss_pred             cccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-H-HHhC
Confidence            456665 3568999999999999999999999999999999999999999984 66654 4899999999985 3 4569


Q ss_pred             CeEEEEeCCeEEEeeChhHHH
Q 013741          103 DDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus       103 d~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |++++|++|+++..|+.++..
T Consensus       615 d~ii~l~~g~i~~~g~~~~l~  635 (1490)
T TIGR01271       615 DKILLLHEGVCYFYGTFSELQ  635 (1490)
T ss_pred             CEEEEEECCEEEEEcCHHHHH
Confidence            999999999999999988765

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.63  E-value=7.7e-16  Score=163.37  Aligned_cols=86  Identities=28%  Similarity=0.456  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      +++++++++..++++       -.||.+|+ ....||||||||++|||+++++|++++||||||+||+.+...+.+.|++
T Consensus       437 ~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~  515 (529)
T TIGR02868       437 DEELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA  515 (529)
T ss_pred             HHHHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            456777888877754       34788886 4457999999999999999999999999999999999999999999998


Q ss_pred             HHhcCCEEEEEecCC
Q 013741           80 IALDGRIVVCSIHQP   94 (437)
Q Consensus        80 l~~~g~tvi~t~hqp   94 (437)
                      +. +++|+|+++|++
T Consensus       516 ~~-~~~TvIiItHrl  529 (529)
T TIGR02868       516 AL-SGKTVVVITHHL  529 (529)
T ss_pred             hc-CCCEEEEEecCC
Confidence            64 569999999985

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.62  E-value=1.7e-15  Score=158.52  Aligned_cols=104  Identities=28%  Similarity=0.461  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      +.+++.++..+|+.+. +++++     .||||||+||.+|++|+.+|++|+|||||+.||..+...+-+.|++  ..| |
T Consensus       132 e~~~~~~L~gLg~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~--~~g-t  202 (530)
T COG0488         132 EARAEEALLGLGFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR--YPG-T  202 (530)
T ss_pred             HHHHHHHHhcCCCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCC-c
Confidence            4678889999999877 67665     5999999999999999999999999999999999999999999985  356 9


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChh
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAK  120 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~  120 (437)
                      +|+++|+ +..+-+.|++++-++.|++. |.|+.+
T Consensus       203 viiVSHD-R~FLd~V~t~I~~ld~g~l~~y~Gny~  236 (530)
T COG0488         203 VIVVSHD-RYFLDNVATHILELDRGKLTPYKGNYS  236 (530)
T ss_pred             EEEEeCC-HHHHHHHhhheEEecCCceeEecCCHH
Confidence            9999999 78899999999999998765 555543

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.62  E-value=2.3e-15  Score=139.46  Aligned_cols=92  Identities=21%  Similarity=0.187  Sum_probs=77.2

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++++++++.   .+..++.     ++.||||||||++||++++    .+|++++|||||+|||+..+..+.+.|+++++ 
T Consensus        95 ~~~~~~l~~---~~~~~~~-----~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-  165 (197)
T cd03278          95 GDVSEIIEA---PGKKVQR-----LSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK-  165 (197)
T ss_pred             hhHHHHHhC---CCccccc-----hhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-
Confidence            467777777   3334443     4579999999999999997    46699999999999999999999999999876 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~  110 (437)
                      +.|||+++|++. . .+.+|+++.+..
T Consensus       166 ~~tiIiitH~~~-~-~~~~d~v~~~~~  190 (197)
T cd03278         166 ETQFIVITHRKG-T-MEAADRLYGVTM  190 (197)
T ss_pred             CCEEEEEECCHH-H-HhhcceEEEEEe
Confidence            689999999975 3 468999999973

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PTZ00243 ABC transporter; Provisional

Probab=99.61  E-value=3.8e-15  Score=174.34  Aligned_cols=96  Identities=28%  Similarity=0.357  Sum_probs=81.8

Q ss_pred             ccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCe
Q 013741           25 TKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDD  104 (437)
Q Consensus        25 ~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~  104 (437)
                      |.+|. ....||||||||++|||+++.+|++++|||||++||+.++..+++.+.....+|+|+|+++|++.  ....+|+
T Consensus       774 t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~  850 (1560)
T PTZ00243        774 TEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADY  850 (1560)
T ss_pred             HHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCE
Confidence            44543 45679999999999999999999999999999999999999998754332336899999999975  3467999


Q ss_pred             EEEEeCCeEEEeeChhHHH
Q 013741          105 LLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus       105 v~~L~~G~~v~~G~~~~~~  123 (437)
                      +++|++|++++.|+.++..
T Consensus       851 ii~l~~G~i~~~G~~~~l~  869 (1560)
T PTZ00243        851 VVALGDGRVEFSGSSADFM  869 (1560)
T ss_pred             EEEEECCEEEEecCHHHHH
Confidence            9999999999999988764

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.60  E-value=4.6e-15  Score=142.25  Aligned_cols=101  Identities=18%  Similarity=0.192  Sum_probs=83.9

Q ss_pred             HHHHHHHHHcCCcccccc---------cccCc--------ccCCCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCC
Q 013741            8 DIVEETIIKMGLQACAET---------KIGNW--------HLRGISSGEKKRLSISIEILTQ----PTVLLLDEPTSGLD   66 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~---------~vg~~--------~~~~lSgGerkRv~ia~~l~~~----p~ll~lDEPtsgLD   66 (437)
                      +.++++++.+|+......         .+.+.        .+..||||||||++||++++.+    |+++++||||+|||
T Consensus       112 ~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD  191 (247)
T cd03275         112 KEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALD  191 (247)
T ss_pred             HHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCC
Confidence            456788999998643221         11111        2378999999999999999875    89999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741           67 SASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        67 ~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~  110 (437)
                      ...+..+.+.|++++++|.++|+++|++  ++.+.+|+++++.+
T Consensus       192 ~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~  233 (247)
T cd03275         192 NTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR  233 (247)
T ss_pred             HHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence            9999999999999988899999999995  46789999999973

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.60  E-value=4e-15  Score=143.02  Aligned_cols=101  Identities=15%  Similarity=0.188  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHcCCcccccc---------------cccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCC
Q 013741            6 INDIVEETIIKMGLQACAET---------------KIGNWHLRGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLD   66 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~---------------~vg~~~~~~lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgLD   66 (437)
                      ..+++++.++.+||......               ..-+..++.||||||||++||++|+    .+|+++++||||+|||
T Consensus       123 ~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld  202 (251)
T cd03273         123 QQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALD  202 (251)
T ss_pred             eHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCC
Confidence            45788999999998621100               0112345679999999999999998    5789999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741           67 SASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS  109 (437)
Q Consensus        67 ~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~  109 (437)
                      ...+..+.+.|++++ +|.++|+++|.+  ++.+.+|+++-+.
T Consensus       203 ~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~  242 (251)
T cd03273         203 LSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR  242 (251)
T ss_pred             HHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence            999999999999985 488999999994  6788899998775

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.59  E-value=4.3e-15  Score=137.70  Aligned_cols=96  Identities=16%  Similarity=0.184  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEI----LTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l----~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++++++++.   .+..++.+     +.||+|||||++||+++    +.+|++++|||||+|||..++..+.+.|+++++
T Consensus        90 ~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~  161 (198)
T cd03276          90 QDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAK  161 (198)
T ss_pred             HHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHh
Confidence            3567777777   45555544     57999999999999999    589999999999999999999999999999865


Q ss_pred             c---CCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741           83 D---GRIVVCSIHQPSSHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        83 ~---g~tvi~t~hqp~~~i~~~fd~v~~L~~G~  112 (437)
                      +   +.||++++|++. ++.+ +|+|.+|..|+
T Consensus       162 ~~~~~~~iii~th~~~-~i~~-~d~v~~~~~~~  192 (198)
T cd03276         162 KQPGRQFIFITPQDIS-GLAS-SDDVKVFRMKD  192 (198)
T ss_pred             cCCCcEEEEEECCccc-cccc-ccceeEEEecC
Confidence            3   358999999975 5655 49999998654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.58  E-value=7e-15  Score=140.41  Aligned_cols=77  Identities=18%  Similarity=0.307  Sum_probs=69.0

Q ss_pred             cccCCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 013741           30 WHLRGISSGEKKRLSISIEILT----QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDL  105 (437)
Q Consensus        30 ~~~~~lSgGerkRv~ia~~l~~----~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v  105 (437)
                      ..++.||||||||++||++++.    +|+++++||||+|||+.++..+.+.|+++++ +.++|+++|.+  ++.+++|++
T Consensus       154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i  230 (243)
T cd03272         154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKF  230 (243)
T ss_pred             ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEE
Confidence            4567899999999999999974    5899999999999999999999999999866 78888888874  578999999


Q ss_pred             EEEe
Q 013741          106 LLLS  109 (437)
Q Consensus       106 ~~L~  109 (437)
                      ++|.
T Consensus       231 ~~l~  234 (243)
T cd03272         231 YGVK  234 (243)
T ss_pred             EEEE
Confidence            9996

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.58  E-value=1.1e-14  Score=132.54  Aligned_cols=102  Identities=26%  Similarity=0.420  Sum_probs=90.0

Q ss_pred             HHHHHHH--cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCE
Q 013741           10 VEETIIK--MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI   86 (437)
Q Consensus        10 v~~~l~~--l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~t   86 (437)
                      -.+-++.  +||++..++.+|-     |||||||-++++++.++.|+||+|||=|+.|||.++..+++.-.++-+ .+.|
T Consensus       127 f~~~l~~l~lgLenrL~~~igl-----LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klT  201 (263)
T COG1101         127 FRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLT  201 (263)
T ss_pred             HHHHHhhcccchhhhhcChhhh-----ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCc
Confidence            3344444  5688889998885     999999999999999999999999999999999999999999888776 6779


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEee
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFG  117 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G  117 (437)
                      .++++|... +..++-+|+++|++|++|.+=
T Consensus       202 tlMVTHnm~-~Al~yG~RlImLh~G~IvlDv  231 (263)
T COG1101         202 TLMVTHNME-DALDYGNRLIMLHSGKIVLDV  231 (263)
T ss_pred             eEEEeccHH-HHHhhCCeEEEEeCCeEEEEc
Confidence            999999965 688999999999999999863

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.56  E-value=6.2e-15  Score=138.09  Aligned_cols=92  Identities=18%  Similarity=0.179  Sum_probs=78.1

Q ss_pred             HHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741           11 EETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILT----QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus        11 ~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~----~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      +++++.++|.+..++.+     +.+|+|||||++||++++.    +|+++++||||+|||+.++..+.+.|+++++ +.+
T Consensus       109 ~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~  182 (212)
T cd03274         109 GEVEQIAQMPKKSWKNI-----SNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQ  182 (212)
T ss_pred             CcEEEeeccccccccch-----hhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCE
Confidence            55667777777666655     4699999999999999974    4799999999999999999999999999864 567


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeC
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~  110 (437)
                      +|+++|++  ++.+.+|++++|+.
T Consensus       183 ~iivs~~~--~~~~~~d~v~~~~~  204 (212)
T cd03274         183 FIVISLRN--NMFELADRLVGIYK  204 (212)
T ss_pred             EEEEECcH--HHHHhCCEEEEEEe
Confidence            77788985  67899999999974

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.56  E-value=3.7e-14  Score=125.92  Aligned_cols=117  Identities=17%  Similarity=0.300  Sum_probs=103.5

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      +.+++.+++-+.|+..||-+..    .|.+++-||.||||||++||+|+.+|+|++.||...+||...+-++.++.-+|.
T Consensus       121 ~~~~R~~~i~~TL~~VGL~Pdh----an~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQ  196 (267)
T COG4167         121 EPEQRRKQIFETLRMVGLLPDH----ANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQ  196 (267)
T ss_pred             ChHHHHHHHHHHHHHhccCccc----cccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHH
Confidence            4677889999999999985432    234567899999999999999999999999999999999999999999999998


Q ss_pred             h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + .|.+-|-++++. .-+-++.|+|++|++|+++..|+++++.
T Consensus       197 ek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~t~~v~  238 (267)
T COG4167         197 EKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGSTADVL  238 (267)
T ss_pred             HHhCceEEEEechh-hHhhhhcccEEEEecCceeecCChhhhh
Confidence            7 688988888775 5789999999999999999999998764

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.54  E-value=1.9e-14  Score=133.98  Aligned_cols=81  Identities=21%  Similarity=0.230  Sum_probs=71.5

Q ss_pred             cccCCCCHHHHHH------HHHHHHHHhCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHhc-CCEEEEEecCCchHHHhh
Q 013741           30 WHLRGISSGEKKR------LSISIEILTQPTVLLLDEPTSGLDSASAF-FVIQVLKCIALD-GRIVVCSIHQPSSHLFYL  101 (437)
Q Consensus        30 ~~~~~lSgGerkR------v~ia~~l~~~p~ll~lDEPtsgLD~~~~~-~i~~~l~~l~~~-g~tvi~t~hqp~~~i~~~  101 (437)
                      ..++.||+|||||      +++|++++.+|+++++||||+|||+..+. .+.+.|++++++ |.++|+++|++.  ....
T Consensus       111 ~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~  188 (204)
T cd03240         111 DMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDA  188 (204)
T ss_pred             cCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhh
Confidence            3456799999996      78999999999999999999999999999 999999999876 899999999964  4567


Q ss_pred             cCeEEEEe-CCe
Q 013741          102 FDDLLLLS-NGE  112 (437)
Q Consensus       102 fd~v~~L~-~G~  112 (437)
                      +|+++.|. +|+
T Consensus       189 ~d~i~~l~~~~~  200 (204)
T cd03240         189 ADHIYRVEKDGR  200 (204)
T ss_pred             CCEEEEEeeCCC
Confidence            99999996 453

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.53  E-value=3.5e-14  Score=124.51  Aligned_cols=101  Identities=21%  Similarity=0.306  Sum_probs=87.1

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI   86 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~t   86 (437)
                      ....+.++.++|.+..-    +..+..||||||||.+++|.|..-|+||+||||||.||..++..+-++|.++-+ +.+.
T Consensus       111 ~aa~~llar~~l~~~~L----~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vA  186 (223)
T COG4619         111 AAALDLLARFALPDSIL----TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVA  186 (223)
T ss_pred             HHHHHHHHHcCCchhhh----cchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceE
Confidence            45667888999876432    234557999999999999999999999999999999999999999999999874 7789


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNGET  113 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G~~  113 (437)
                      ++-++|+|. +..+.+|+++-+..|..
T Consensus       187 v~WiTHd~d-qa~rha~k~itl~~G~~  212 (223)
T COG4619         187 VLWITHDKD-QAIRHADKVITLQPGHA  212 (223)
T ss_pred             EEEEecChH-HHhhhhheEEEeccCcc
Confidence            999999985 56778999999998875

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.52  E-value=3.6e-14  Score=124.61  Aligned_cols=104  Identities=22%  Similarity=0.309  Sum_probs=88.7

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.++++..++..|++.+..=..    .+.+.||||+|||.||+.++.+-.||+|||||+.||+.++..++++|++-+
T Consensus       124 ~~~~a~~~a~~Ll~rLnlperLW~L----aPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K  199 (235)
T COG4778         124 PREVARAKAADLLTRLNLPERLWSL----APATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK  199 (235)
T ss_pred             CHHHHHHHHHHHHHHcCCCHHHhcC----CCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH
Confidence            4566778899999999986543322    356899999999999999999999999999999999999999999999988


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~  110 (437)
                      ..|..+|-+-|+ ..--...+||++-+..
T Consensus       200 a~GaAlvGIFHD-eevre~vadR~~~~~~  227 (235)
T COG4778         200 ARGAALVGIFHD-EEVREAVADRLLDVSA  227 (235)
T ss_pred             hcCceEEEeecc-HHHHHHHhhheeeccc
Confidence            899999999998 4445677899987753

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.50  E-value=1.1e-13  Score=156.23  Aligned_cols=114  Identities=22%  Similarity=0.348  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      +++-+++++...|++.       -.|.||+ +.-.||||||||+++|||+-+|+||++||.|.|.+|+....++.+..-+
T Consensus       610 ~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGE-rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~  688 (1381)
T KOG0054|consen  610 EERYDKVIKACALKKDLEILPFGDLTEIGE-RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIR  688 (1381)
T ss_pred             HHHHHHHHHHccCHhHHhhcCCCCcceecC-CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHH
Confidence            4566777777776643       3455665 3346999999999999999999999999999999999999999986655


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ..-+++|+|++|||.  +....+|.|++|++|++...|+.+|..
T Consensus       689 ~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~  730 (1381)
T KOG0054|consen  689 GLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELL  730 (1381)
T ss_pred             hhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHH
Confidence            555789999999984  577889999999999999999999887

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.47  E-value=2.2e-13  Score=124.09  Aligned_cols=75  Identities=20%  Similarity=0.203  Sum_probs=69.1

Q ss_pred             CCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741           34 GISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS  109 (437)
Q Consensus        34 ~lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~  109 (437)
                      -+|||||||+++|++++    .+|+++++|||++|||+..+..+.+.|++++++|.++|+++|++.  ....+|+++.+.
T Consensus        94 ~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~  171 (178)
T cd03239          94 ILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVL  171 (178)
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEE
Confidence            39999999999999996    699999999999999999999999999999888899999999974  557899999997


Q ss_pred             C
Q 013741          110 N  110 (437)
Q Consensus       110 ~  110 (437)
                      +
T Consensus       172 ~  172 (178)
T cd03239         172 F  172 (178)
T ss_pred             E
Confidence            5

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.46  E-value=2.2e-13  Score=138.44  Aligned_cols=108  Identities=23%  Similarity=0.378  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHcC-CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            5 EINDIVEETIIKMG-LQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ..+.++.++|..+| +.+..+..+     +++|||+|+|+++|++|..+|++|+|||||+|||..+...+-+.|++..+-
T Consensus       196 ~~~~k~~~il~glgf~~~m~~k~~-----~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~  270 (614)
T KOG0927|consen  196 TFEAKAAKILHGLGFLSEMQDKKV-----KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI  270 (614)
T ss_pred             hHHHHHHHHHHhcCCCHhHHHHHh-----hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc
Confidence            34456667777777 445555544     679999999999999999999999999999999999999999998774322


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeE-EEeeChh
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGET-IYFGDAK  120 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~-v~~G~~~  120 (437)
                        ++|+++|. .+.+=..|.+|+-|.+++. .|.|+.+
T Consensus       271 --~lVi~sh~-QDfln~vCT~Ii~l~~kkl~~y~Gnyd  305 (614)
T KOG0927|consen  271 --ILVIVSHS-QDFLNGVCTNIIHLDNKKLIYYEGNYD  305 (614)
T ss_pred             --eEEEEecc-hhhhhhHhhhhheecccceeeecCCHH
Confidence              78888886 6788899999999999994 4556654

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.46  E-value=2.5e-13  Score=137.21  Aligned_cols=115  Identities=21%  Similarity=0.332  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      ..+.++...++++.++...+.-    ....+.||||.+||+-+||||..+|++|+..+||.|||..++..+.+.|.+.++
T Consensus       376 ~~~i~~~a~~li~~fdVr~~~~----~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~  451 (501)
T COG3845         376 RRAIRKFARELIEEFDVRAPSP----DAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD  451 (501)
T ss_pred             HHHHHHHHHHHHHHcCccCCCC----CcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh
Confidence            4567788999999999863221    123567999999999999999999999999999999999999999999999999


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      .|+.|++++.+. +|++.++||+.+|++|+++...+++++
T Consensus       452 ~G~AVLLiS~dL-DEil~lsDrIaVi~~Gri~~~~~~~~~  490 (501)
T COG3845         452 AGKAVLLISEDL-DEILELSDRIAVIYEGRIVGIVPPEEA  490 (501)
T ss_pred             cCCEEEEEehhH-HHHHHhhheeeeeeCCceecccccccC
Confidence            999999999885 689999999999999999998887753

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.43  E-value=2.8e-13  Score=126.99  Aligned_cols=82  Identities=20%  Similarity=0.182  Sum_probs=69.1

Q ss_pred             cccCCCCHHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-C-CEEEEEecCCchHHHhhcC
Q 013741           30 WHLRGISSGEKKRLSISIEI----LTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-G-RIVVCSIHQPSSHLFYLFD  103 (437)
Q Consensus        30 ~~~~~lSgGerkRv~ia~~l----~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-g-~tvi~t~hqp~~~i~~~fd  103 (437)
                      ..+..||||||||+.++.++    +.+|+++++||||+|||+.++..+.+.|++++++ | .++|+++|+.. +..+.+|
T Consensus       122 ~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~  200 (213)
T cd03277         122 LDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHE  200 (213)
T ss_pred             cchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccC
Confidence            35568999999998877554    5899999999999999999999999999999876 5 57999999865 3556665


Q ss_pred             --eEEEEeCCe
Q 013741          104 --DLLLLSNGE  112 (437)
Q Consensus       104 --~v~~L~~G~  112 (437)
                        ++++|++|+
T Consensus       201 ~~~v~~l~~g~  211 (213)
T cd03277         201 KMTVLCVYNGP  211 (213)
T ss_pred             ceEEEEEecCc
Confidence              788888887

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=6.9e-13  Score=118.63  Aligned_cols=84  Identities=25%  Similarity=0.485  Sum_probs=78.7

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      +.+.+.++.+||....|.+++     .||-||||||+||+-.++.+++=+||||+++||......+-..+..=+++|-.|
T Consensus       109 ~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiV  183 (209)
T COG4133         109 ATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIV  183 (209)
T ss_pred             hhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEE
Confidence            568889999999999999887     599999999999999999999999999999999999999999999888889999


Q ss_pred             EEEecCCch
Q 013741           88 VCSIHQPSS   96 (437)
Q Consensus        88 i~t~hqp~~   96 (437)
                      |.|+|||..
T Consensus       184 llttHq~l~  192 (209)
T COG4133         184 LLTTHQPLP  192 (209)
T ss_pred             EEecCCccC
Confidence            999999974

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.41  E-value=8.8e-14  Score=122.75  Aligned_cols=116  Identities=22%  Similarity=0.353  Sum_probs=100.3

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH-----hCC--CEEEEeCCCCCCCHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEIL-----TQP--TVLLLDEPTSGLDSASAFFVI   74 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~-----~~p--~ll~lDEPtsgLD~~~~~~i~   74 (437)
                      |.+++...++++...++|++.....+     ..|||||=|||-+|-..+     .||  ++|+||||.++||......+-
T Consensus        98 P~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLd  172 (248)
T COG4138          98 PDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALD  172 (248)
T ss_pred             chHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHH
Confidence            45667778899999999987655444     479999999999886654     355  589999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           75 QVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        75 ~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +.|.+++..|.+||++.|+.+ ...+..|++.+|++|++...|..+|+.
T Consensus       173 rll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~~~eVl  220 (248)
T COG4138         173 RLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGRREEVL  220 (248)
T ss_pred             HHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhcCeEEeecchhhhc
Confidence            999999999999999999986 567779999999999999999999875

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.41  E-value=2.3e-13  Score=123.37  Aligned_cols=116  Identities=17%  Similarity=0.273  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DG   84 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g   84 (437)
                      ++++.-++|...|+.+..|-.  ..++.+|.-||-|+|.||.+++.+|++|+.||||+.+|+.++.++.++|.++.+ +|
T Consensus       132 rKrrAIeLLHrVGIKdHkDIM--~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~  209 (330)
T COG4170         132 RKRRAIELLHRVGIKDHKDIM--RSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSN  209 (330)
T ss_pred             hHHHHHHHHHHhccccHHHHH--HhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCC
Confidence            356777899999999888743  457889999999999999999999999999999999999999999999999987 78


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      .||++++|+.. .+.+-+|++-+|+=|+.+..++.+++++
T Consensus       210 TtILL~s~Dl~-~is~W~d~i~VlYCGQ~~ESa~~e~l~~  248 (330)
T COG4170         210 TTILLISHDLQ-MISQWADKINVLYCGQTVESAPSEELVT  248 (330)
T ss_pred             ceEEEEcccHH-HHHHHhhheEEEEecccccccchhHHhc
Confidence            89999999964 6899999999999999999999988764

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.40  E-value=1.7e-12  Score=146.72  Aligned_cols=98  Identities=17%  Similarity=0.329  Sum_probs=85.9

Q ss_pred             ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741           23 AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF  102 (437)
Q Consensus        23 ~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~f  102 (437)
                      .|+.|. +...++|-||||-+++||||+++++||+|||.|+..|+.+-..|.++||+- -+++||+.+-|..+ .+.+ +
T Consensus      1265 Ld~~v~-egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~-F~dcTVltIAHRl~-TVmd-~ 1340 (1381)
T KOG0054|consen 1265 LDSEVS-EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREE-FKDCTVLTIAHRLN-TVMD-S 1340 (1381)
T ss_pred             CCceec-CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHH-hcCCeEEEEeeccc-hhhh-c
Confidence            444443 345679999999999999999999999999999999999999999999983 36799999999986 4666 8


Q ss_pred             CeEEEEeCCeEEEeeChhHHHH
Q 013741          103 DDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus       103 d~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      |||++|++|+++.+|+|+++.+
T Consensus      1341 DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1341 DRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred             CeEEEeeCCeEeecCChHHHHh
Confidence            9999999999999999998864

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.38  E-value=1.3e-12  Score=127.47  Aligned_cols=76  Identities=25%  Similarity=0.358  Sum_probs=68.4

Q ss_pred             CCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741           34 GISSGEKKRLSISIEILT----QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS  109 (437)
Q Consensus        34 ~lSgGerkRv~ia~~l~~----~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~  109 (437)
                      .||||||||+++|++++.    +|+++++||||+|||+.....+.+.|+++++ +.|+|+++|+|.  +...+|+++++.
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~  246 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE  246 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence            599999999999987654    9999999999999999999999999999865 689999999985  568899999998


Q ss_pred             CCe
Q 013741          110 NGE  112 (437)
Q Consensus       110 ~G~  112 (437)
                      +|+
T Consensus       247 ~~~  249 (276)
T cd03241         247 KEV  249 (276)
T ss_pred             Eec
Confidence            653

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.37  E-value=2.5e-12  Score=134.92  Aligned_cols=108  Identities=25%  Similarity=0.285  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            7 NDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      ++.+...|..+++.. ...++|     +.||||||.||.+|..++.+|.+|+|||||+.||..+...+.+.|++.   .-
T Consensus       416 e~~~r~~L~~f~F~~~~~~~~v-----~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~G  487 (530)
T COG0488         416 EQEVRAYLGRFGFTGEDQEKPV-----GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EG  487 (530)
T ss_pred             HHHHHHHHHHcCCChHHHhCch-----hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CC
Confidence            567888999999863 233444     579999999999999999999999999999999999999999998875   35


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |||+++|+ +..+-+.+++++.+.++-..|.|..++-.
T Consensus       488 tvl~VSHD-r~Fl~~va~~i~~~~~~~~~~~g~y~~y~  524 (530)
T COG0488         488 TVLLVSHD-RYFLDRVATRIWLVEDKVEEFEGGYEDYL  524 (530)
T ss_pred             eEEEEeCC-HHHHHhhcceEEEEcCceeEcCCCHHHHH
Confidence            99999999 46899999999999883333447766443

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.37  E-value=1.4e-12  Score=130.19  Aligned_cols=97  Identities=28%  Similarity=0.452  Sum_probs=88.2

Q ss_pred             HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Q 013741            9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVV   88 (437)
Q Consensus         9 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi   88 (437)
                      +.+++++.|+|+...|..+.     .|||||-||++||.+++++++++++|||||-||...+..+.+.++++++.+++|+
T Consensus       193 ~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~Vi  267 (591)
T COG1245         193 KFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVI  267 (591)
T ss_pred             cHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEE
Confidence            67889999999999888775     5999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCchHHHhhcCeEEEEeCC
Q 013741           89 CSIHQPSSHLFYLFDDLLLLSNG  111 (437)
Q Consensus        89 ~t~hqp~~~i~~~fd~v~~L~~G  111 (437)
                      ++-|+.. -+--+.|-|.++.+-
T Consensus       268 VVEHDLa-vLD~lsD~vhI~YG~  289 (591)
T COG1245         268 VVEHDLA-VLDYLSDFVHILYGE  289 (591)
T ss_pred             EEechHH-HHHHhhheeEEEecC
Confidence            9999964 456678888888753

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.36  E-value=5.4e-13  Score=123.84  Aligned_cols=82  Identities=21%  Similarity=0.161  Sum_probs=73.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741           33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVI-QVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG  111 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~-~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G  111 (437)
                      ..+|+||||++.++++ +.+|+++++|||++|||+.....+. ..++++.+.|.++|+++|.  .++.+++|++..+.+|
T Consensus        90 s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~--~~l~~~~d~~~~l~~g  166 (200)
T cd03280          90 STFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY--GELKAYAYKREGVENA  166 (200)
T ss_pred             chHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH--HHHHHHHhcCCCeEEE
Confidence            5689999999999977 5899999999999999999999997 4788888789999999997  3678999999999999


Q ss_pred             eEEEee
Q 013741          112 ETIYFG  117 (437)
Q Consensus       112 ~~v~~G  117 (437)
                      ++.+.+
T Consensus       167 ~l~~~~  172 (200)
T cd03280         167 SMEFDP  172 (200)
T ss_pred             EEEEec
Confidence            998874

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=99.35  E-value=4.2e-11  Score=113.82  Aligned_cols=194  Identities=13%  Similarity=0.103  Sum_probs=134.3

Q ss_pred             HHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCC-CCC--hhhHhhh----hHHHHHHHHHHHHHhhhhhhhHHHHHH-H
Q 013741          233 RSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNV-GLS--NPAIYGR----PKCVAFIYGFLICLSVGGLPSFIEEHK-A  304 (437)
Q Consensus       233 R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~-~~~--~~~i~~r----~~~l~f~~~~~~~~~~~~~~~~~~er~-v  304 (437)
                      |+++...|||.....-+++-+++.++.|.++-+. +.+  ..+....    .|.+.+.....+.  ..... ...||. -
T Consensus         1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~--~~~~~-~~~~~~~g   77 (236)
T TIGR01247         1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSF--FSGIS-VIWDRQFG   77 (236)
T ss_pred             CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHH--HhhhH-HHHHHHhC
Confidence            6778889999988888888888888888887542 111  1121111    1111111111111  11111 122222 1


Q ss_pred             hhhccCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Q 013741          305 SYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVL  384 (437)
Q Consensus       305 ~~rE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~~  384 (437)
                      +.|+....=-++..|+++|.+.+++..++..+++.++.+++.+++.  ..++..++..++...+..++|.+++...++.+
T Consensus        78 ~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~  155 (236)
T TIGR01247        78 FLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME  155 (236)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            2222222233678999999999999999999999999998877654  33444444455555667889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhh
Q 013741          385 MGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIM  433 (437)
Q Consensus       385 ~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~  433 (437)
                      .+..+.+.+..+++.+||.+.|.+.+|.| ++| +.+++|++|+.|++-
T Consensus       156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~-~~~-i~~~~P~~~~~~~~r  202 (236)
T TIGR01247       156 GFQIIMSMLMLPMFFLSGAFYPITTMPAW-MQG-LAKINPLTYAVDGAR  202 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHhCHHH-HHH-HHHHCcHHHHHHHHH
Confidence            88888888888899999999999999985 899 999999999999864

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.35  E-value=3.7e-12  Score=114.29  Aligned_cols=75  Identities=24%  Similarity=0.351  Sum_probs=68.2

Q ss_pred             CCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741           34 GISSGEKKRLSISIEILT----QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS  109 (437)
Q Consensus        34 ~lSgGerkRv~ia~~l~~----~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~  109 (437)
                      ++|+||+||++++++|..    +|+++++|||++|+|+.....+.+.+++..++|.++|+++|++.  +.+.+|+++.|.
T Consensus        77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~  154 (162)
T cd03227          77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK  154 (162)
T ss_pred             eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence            699999999999999987    78999999999999999999999999988766889999999974  567799999986


Q ss_pred             C
Q 013741          110 N  110 (437)
Q Consensus       110 ~  110 (437)
                      .
T Consensus       155 ~  155 (162)
T cd03227         155 K  155 (162)
T ss_pred             E
Confidence            4

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>TIGR00634 recN DNA repair protein RecN

Probab=99.34  E-value=2.9e-12  Score=136.79  Aligned_cols=77  Identities=21%  Similarity=0.329  Sum_probs=70.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 013741           33 RGISSGEKKRLSISIEILTQ----PTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL  108 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~~~----p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L  108 (437)
                      +.+||||++|++||++++..    |+++++||||+|||+.++..+.+.|+++++ +++||+++|+|.  +...+|+++++
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l  515 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV  515 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence            56899999999999999985    699999999999999999999999999985 799999999984  45689999999


Q ss_pred             eCCe
Q 013741          109 SNGE  112 (437)
Q Consensus       109 ~~G~  112 (437)
                      ++|.
T Consensus       516 ~k~~  519 (563)
T TIGR00634       516 EKEG  519 (563)
T ss_pred             EEcc
Confidence            8865

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.32  E-value=1.1e-11  Score=131.31  Aligned_cols=110  Identities=26%  Similarity=0.394  Sum_probs=94.1

Q ss_pred             HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         9 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p---~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      +.-+.|.++||.=.   +.|. ...+|||||.||+-+|.+|..+.   .+++|||||+||......++++.|.+|.+.|.
T Consensus       801 rkLqtL~dVGLgYi---~LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~Gn  876 (935)
T COG0178         801 RKLQTLVDVGLGYI---KLGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGN  876 (935)
T ss_pred             HHHHHHHHcCcceE---ecCC-ccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence            34456677787632   2342 44579999999999999999887   89999999999999999999999999999999


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEe------CCeEEEeeChhHHHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLS------NGETIYFGDAKMAVK  124 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~------~G~~v~~G~~~~~~~  124 (437)
                      |||++-|..  ++.+.+|.|+=|-      +|++|..|+|+++.+
T Consensus       877 TViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~  919 (935)
T COG0178         877 TVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK  919 (935)
T ss_pred             EEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence            999999985  5788899999883      689999999999864

>PRK10869 recombination and repair protein; Provisional

Probab=99.30  E-value=8e-12  Score=132.62  Aligned_cols=104  Identities=19%  Similarity=0.347  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHcCCcccc-------cc----cccCc----------------ccCCCCHHHHHHHHHHHHHHh----CCC
Q 013741            6 INDIVEETIIKMGLQACA-------ET----KIGNW----------------HLRGISSGEKKRLSISIEILT----QPT   54 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~-------~~----~vg~~----------------~~~~lSgGerkRv~ia~~l~~----~p~   54 (437)
                      ..+.|.+.|+.|+|.+..       +.    .-|..                ..+.+||||++|++||+.++.    +|+
T Consensus       375 l~~~v~~~L~~L~m~~a~f~v~~~~~~~~~~~~G~d~veF~~~~n~g~~~~pL~k~lSgGe~~Ri~LA~~~~~~~~~~~~  454 (553)
T PRK10869        375 LAQLITESMHELSMPHGKFTIDVKFDPEHLSADGADRIEFRVTTNPGQPLQPIAKVASGGELSRIALAIQVITARKMETP  454 (553)
T ss_pred             HHHHHHHHHHHcCCCCcEEEEEEecCCCCCCCCCceEEEEEEecCCCCCcchhhhhCCHHHHHHHHHHHHHHhccCCCCC
Confidence            445778889999997652       11    11211                024689999999999999997    589


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741           55 VLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        55 ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~  112 (437)
                      ++++|||++|||..++..+.+.|+++++ +.+|||++|+|.  +...+|+.+.+.++.
T Consensus       455 ~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~k~~  509 (553)
T PRK10869        455 ALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVSKET  509 (553)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEeccc
Confidence            9999999999999999999999999975 689999999984  568999999998753

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.29  E-value=7.8e-12  Score=133.70  Aligned_cols=79  Identities=23%  Similarity=0.338  Sum_probs=69.6

Q ss_pred             ccCCCCHHHHHHHHHHHHHH----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHH
Q 013741           31 HLRGISSGEKKRLSISIEIL----------TQPTVLLLDEPT-SGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLF   99 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~l~----------~~p~ll~lDEPt-sgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~   99 (437)
                      ....||||||||++||++++          .+|++++||||| ++||+.+...+.+.|+++  .|.+||+++|++.  ..
T Consensus       465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~  540 (562)
T PHA02562        465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP  540 (562)
T ss_pred             ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence            34679999999999999887          599999999998 789999999999999998  5889999999964  55


Q ss_pred             hhcCeEEEEeC-CeE
Q 013741          100 YLFDDLLLLSN-GET  113 (437)
Q Consensus       100 ~~fd~v~~L~~-G~~  113 (437)
                      ..+|++++|.+ |+.
T Consensus       541 ~~~d~~~~l~~~~~~  555 (562)
T PHA02562        541 QKFDRHLKMEKVGRF  555 (562)
T ss_pred             hhhhcEEEEEEECCe
Confidence            77999999985 654

>TIGR00618 sbcc exonuclease SbcC

Probab=99.29  E-value=9.6e-12  Score=141.79  Aligned_cols=81  Identities=21%  Similarity=0.197  Sum_probs=74.0

Q ss_pred             cccCCCCHHHHHHHHHHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHH
Q 013741           30 WHLRGISSGEKKRLSISIEILT----------QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLF   99 (437)
Q Consensus        30 ~~~~~lSgGerkRv~ia~~l~~----------~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~   99 (437)
                      ..++.|||||++||++|++|+.          +|++||+||||+|||+.+...+++.|++++..|++|++++|.|. ...
T Consensus       946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~ 1024 (1042)
T TIGR00618       946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRE 1024 (1042)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHH
Confidence            3568899999999999999986          79999999999999999999999999999888999999999974 578


Q ss_pred             hhcCeEEEEeCC
Q 013741          100 YLFDDLLLLSNG  111 (437)
Q Consensus       100 ~~fd~v~~L~~G  111 (437)
                      ..+|+|.+++.|
T Consensus      1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1025 RIPHRILVKKTN 1036 (1042)
T ss_pred             hhCCEEEEEECC
Confidence            889999999743

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.26  E-value=1.1e-11  Score=123.88  Aligned_cols=94  Identities=22%  Similarity=0.377  Sum_probs=82.8

Q ss_pred             HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEE
Q 013741           10 VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVV   88 (437)
Q Consensus        10 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi   88 (437)
                      ..++++-|+|++..+..+.     +|||||.|||+||.+|..++++++||||++-||+..+..+.+.+|+... .++|.+
T Consensus       436 ~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~  510 (591)
T COG1245         436 KTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTAL  510 (591)
T ss_pred             HHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEE
Confidence            4567788888888877764     6999999999999999999999999999999999999999999999998 678999


Q ss_pred             EEecCCchHHHhhcCeEEEEe
Q 013741           89 CSIHQPSSHLFYLFDDLLLLS  109 (437)
Q Consensus        89 ~t~hqp~~~i~~~fd~v~~L~  109 (437)
                      ++-|+.. -+--+.||+++..
T Consensus       511 vVdHDi~-~~dyvsDr~ivF~  530 (591)
T COG1245         511 VVDHDIY-MIDYVSDRLIVFE  530 (591)
T ss_pred             EEeccee-hhhhhhceEEEEe
Confidence            9999964 4566788888775

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.23  E-value=2.1e-11  Score=105.24  Aligned_cols=86  Identities=26%  Similarity=0.317  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHh
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC-IAL   82 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~-l~~   82 (437)
                      +.+++.++..+++.||....+.     .+..||||||-||++-|+|+..|+.++||||+|.||..-+.+..+..-. +..
T Consensus       109 ~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~  183 (213)
T COG4136         109 NARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRA  183 (213)
T ss_pred             HHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHh
Confidence            3566788999999999887765     3457999999999999999999999999999999999999999887544 445


Q ss_pred             cCCEEEEEecCC
Q 013741           83 DGRIVVCSIHQP   94 (437)
Q Consensus        83 ~g~tvi~t~hqp   94 (437)
                      .|..+|.++|+-
T Consensus       184 agiPtv~VTHD~  195 (213)
T COG4136         184 AGIPTVQVTHDL  195 (213)
T ss_pred             cCCCeEEEeccc
Confidence            799999999984

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=3.8e-11  Score=121.70  Aligned_cols=100  Identities=24%  Similarity=0.350  Sum_probs=84.2

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      +..+.-+..+||+.-    +....+.+||||||-||.+|.....+|.+|+|||||+.||-.+-..+.+.|+..   +-.|
T Consensus       460 ee~r~hl~~~Gl~g~----la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGV  532 (582)
T KOG0062|consen  460 EEIRRHLGSFGLSGE----LALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGV  532 (582)
T ss_pred             HHHHHHHHhcCCCch----hhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcE
Confidence            456667888998632    222335689999999999999999999999999999999999999998888875   3578


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEEE
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSNGETIY  115 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~  115 (437)
                      |+++|+ ...+-.+|+.+-+..+|++.-
T Consensus       533 v~VSHd-~~fi~~~c~E~Wvve~g~vt~  559 (582)
T KOG0062|consen  533 VLVSHD-EEFISSLCKELWVVEDGKVTP  559 (582)
T ss_pred             EEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence            999999 467899999999999999864

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=99.21  E-value=8.1e-10  Score=106.35  Aligned_cols=197  Identities=13%  Similarity=-0.001  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHhhhC-hHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHHHHhh-hhhhhHHHHHHH
Q 013741          227 LCILSHRSFLNMLRD-MGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSV-GGLPSFIEEHKA  304 (437)
Q Consensus       227 ~~~L~~R~~~~~~Rd-~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~~~~~-~~~~~~~~er~v  304 (437)
                      ...+.+|+++..+|+ |......+++-++.-+++|..+-....+..+   ....-|..-+.+.+..+ ++..  -.--..
T Consensus         7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g---~~y~~f~~pg~l~~~~~~~~~~--~~~~~~   81 (253)
T TIGR01291         7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG---VSYAAFLAAGMVATSAMTASTF--ETIYAT   81 (253)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC---CCHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            345679999999999 8988888999888888888887543111111   11122222222222111 1110  000123


Q ss_pred             hhhccCCCCc--------chHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 013741          305 SYRERISCHY--------GEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVV  376 (437)
Q Consensus       305 ~~rE~~~g~Y--------~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i  376 (437)
                      +.|||.+|.+        ++..+.+||++.+.-..++..++...+.++ .|..+. .........+++...+..++|.++
T Consensus        82 ~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~  159 (253)
T TIGR01291        82 FARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLV  159 (253)
T ss_pred             HHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444432        678899999999877777766665554443 344433 334444444455556666899999


Q ss_pred             HHhccchHHHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHh
Q 013741          377 ALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPI  432 (437)
Q Consensus       377 ~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l  432 (437)
                      +.+.++.+.+..+.+.+..+++..||.+.|.+.+|.+ +++ +.++||+.|+.|++
T Consensus       160 a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~-lq~-i~~~nPlt~~v~~~  213 (253)
T TIGR01291       160 AALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDV-IQG-MTHFLPLAHSIDDI  213 (253)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHH-HHH-HHHHCcHHHHHHHH
Confidence            9999999998888889999999999999999999985 788 99999999999985

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.20  E-value=3.5e-11  Score=104.27  Aligned_cols=57  Identities=40%  Similarity=0.710  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 013741            6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS   63 (437)
Q Consensus         6 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPts   63 (437)
                      ..++++++++.+++.+..++.++.. .+.||||||||+.||++|+.+|++++|||||+
T Consensus        81 ~~~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   81 SDERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             HHHHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             ccccccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            4567999999999999888888653 37899999999999999999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.20  E-value=3.6e-11  Score=126.02  Aligned_cols=100  Identities=29%  Similarity=0.340  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHcCCcccccccccC-cccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            7 NDIVEETIIKMGLQACAETKIGN-WHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~-~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      ++.+.++|.+.||++..+..-+. ..-+.||+|||||+++||.|+++|++++|||.|++||..+...+.+.+++-. .+.
T Consensus       487 d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~  565 (604)
T COG4178         487 DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDA  565 (604)
T ss_pred             hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCC
Confidence            45788999999999988775443 2457899999999999999999999999999999999999999999998732 468


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEe
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLS  109 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~  109 (437)
                      |||-+.|+|.  +..+.++.+-+.
T Consensus       566 tvISV~Hr~t--l~~~h~~~l~l~  587 (604)
T COG4178         566 TVISVGHRPT--LWNFHSRQLELL  587 (604)
T ss_pred             EEEEeccchh--hHHHHhhheeec
Confidence            9999999976  455556655543

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=99.19  E-value=2e-09  Score=103.48  Aligned_cols=205  Identities=13%  Similarity=0.099  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCC-CCChhhHh--hhhHHHHHHHHHHHHH----hhhhhh
Q 013741          224 WKQLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNV-GLSNPAIY--GRPKCVAFIYGFLICL----SVGGLP  296 (437)
Q Consensus       224 ~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~-~~~~~~i~--~r~~~l~f~~~~~~~~----~~~~~~  296 (437)
                      +++++.+++|+++...|||..+...+++-++.-+++|.+|-.. +.+.....  ...-..|...+.+.+.    ++..-.
T Consensus         1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~~   80 (253)
T TIGR03861         1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSSL   80 (253)
T ss_pred             ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3678999999999999999999999999999999999988542 11100000  0011122222221111    111111


Q ss_pred             hHHHHHH--HhhhccCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHH
Q 013741          297 SFIEEHK--ASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMM  374 (437)
Q Consensus       297 ~~~~er~--v~~rE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~  374 (437)
                      ....||.  ...+=+... -++..+.+++++..+-..++..++..++.+. .|.+.+...+......+++......++|.
T Consensus        81 ~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lgl  158 (253)
T TIGR03861        81 SMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALGL  158 (253)
T ss_pred             HhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            1222222  222222222 3778899999999987777766555554433 36655544444334444445556678999


Q ss_pred             HHHHhccchHHHHHHHHHHHHHHHHhhccccCCCCc---ccccccccccccChhHHHHHHh
Q 013741          375 VVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDL---PKFFWQYPMSYITFAAWAIEPI  432 (437)
Q Consensus       375 ~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i---p~~~w~w~~~yisp~~y~~e~l  432 (437)
                      +++.++++......+.+.++.+++..||.+-|.+.+   |.| ++| +.++||+.|..|++
T Consensus       159 ~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~-l~~-i~~~nPl~~~i~~~  217 (253)
T TIGR03861       159 ALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTW-LYW-ICALNPFTHAVELV  217 (253)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHH-HHH-HHHhCcHHHHHHHH
Confidence            999999998888888888888888999999898766   664 677 99999999999876

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=1.5e-11  Score=124.60  Aligned_cols=106  Identities=23%  Similarity=0.353  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      .+..+++|..+|.++-.    -....+.+|||=|=|+++||||..+||||+|||||+.||..+...+.+.|+.+.   .|
T Consensus       175 ~ei~~~~L~glGFt~em----q~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~---~T  247 (582)
T KOG0062|consen  175 EEIYDKILAGLGFTPEM----QLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK---IT  247 (582)
T ss_pred             HHHHHHHHHhCCCCHHH----HhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC---ce
Confidence            44555588888886432    123456899999999999999999999999999999999999999999998864   79


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChh
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAK  120 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~  120 (437)
                      +|+++|+ +..+-+.|.+|+-+++-++- |-|+.+
T Consensus       248 ~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~  281 (582)
T KOG0062|consen  248 SLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYS  281 (582)
T ss_pred             EEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHH
Confidence            9999999 67788888888888765543 445544

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.15  E-value=3.5e-10  Score=120.18  Aligned_cols=91  Identities=24%  Similarity=0.340  Sum_probs=81.7

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE-
Q 013741           32 LRGISSGEKKRLSISIEILTQPT--VLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL-  108 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l~~~p~--ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L-  108 (437)
                      ..+|||||.||+-+|..+=++=.  +++||||+-||.+....++++.|++|++.|.|+|++-|++  +....+|+|+=+ 
T Consensus       479 a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiG  556 (935)
T COG0178         479 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIG  556 (935)
T ss_pred             CCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeC
Confidence            35799999999999999977643  6799999999999999999999999999999999999995  577889999987 


Q ss_pred             -----eCCeEEEeeChhHHHH
Q 013741          109 -----SNGETIYFGDAKMAVK  124 (437)
Q Consensus       109 -----~~G~~v~~G~~~~~~~  124 (437)
                           ++|++++.|+++++.+
T Consensus       557 PgAG~~GGeIv~~Gtp~~i~~  577 (935)
T COG0178         557 PGAGEHGGEIVAEGTPEELLA  577 (935)
T ss_pred             CCCCcCCCEEEEccCHHHHHh
Confidence                 4799999999998864

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.14  E-value=7.4e-11  Score=120.25  Aligned_cols=107  Identities=22%  Similarity=0.316  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            5 EINDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ...+.+..++..+||+. ..+.+     .+.||+|||+||.+|+.++..|.+|+|||||+|||..+...+.+.|.++   
T Consensus       484 ~~~e~~r~ilgrfgLtgd~q~~p-----~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---  555 (614)
T KOG0927|consen  484 KELEEMRSILGRFGLTGDAQVVP-----MSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---  555 (614)
T ss_pred             chHHHHHHHHHHhCCCccccccc-----hhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---
Confidence            34567889999999984 33333     4579999999999999999999999999999999999999999888764   


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCC-eEEEeeChh
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNG-ETIYFGDAK  120 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G-~~v~~G~~~  120 (437)
                      .-+||.++|+- .-|-+..+++.+-.+| ...+.|+..
T Consensus       556 ~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i~  592 (614)
T KOG0927|consen  556 PGGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDIE  592 (614)
T ss_pred             CCceeeeechh-hHHHHHHHHhHhhccCceeecCccHH
Confidence            34788999995 4688888888888754 455666554

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.14  E-value=5.3e-11  Score=112.26  Aligned_cols=83  Identities=22%  Similarity=0.239  Sum_probs=70.9

Q ss_pred             cCCCCHHHHHHHHHHHHH--HhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeE
Q 013741           32 LRGISSGEKKRLSISIEI--LTQPTVLLLDEP---TSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPSSHLFYLFDDL  105 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l--~~~p~ll~lDEP---tsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~~~i~~~fd~v  105 (437)
                      .+++|.|+++++.++..+  +.+|++++||||   |++||..+....  .++.+.+ .|.++|+++|.  .++.+++|++
T Consensus        87 ~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~  162 (222)
T cd03285          87 LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEV  162 (222)
T ss_pred             hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcC
Confidence            357999999999999999  899999999999   999998888543  3455554 58899999996  5789999999


Q ss_pred             EEEeCCeEEEeeC
Q 013741          106 LLLSNGETIYFGD  118 (437)
Q Consensus       106 ~~L~~G~~v~~G~  118 (437)
                      ..+++|++...++
T Consensus       163 ~~i~~g~~~~~~~  175 (222)
T cd03285         163 PNVKNLHVTALTD  175 (222)
T ss_pred             CCeEEEEEEEEEe
Confidence            9999999988764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=99.11  E-value=4.4e-09  Score=99.75  Aligned_cols=187  Identities=9%  Similarity=0.084  Sum_probs=116.0

Q ss_pred             hhChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhh-hhHHHHHHHHHHHHHhhhhhhhHHHHHH--HhhhccCCCCcc
Q 013741          239 LRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYG-RPKCVAFIYGFLICLSVGGLPSFIEEHK--ASYRERISCHYG  315 (437)
Q Consensus       239 ~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~-r~~~l~f~~~~~~~~~~~~~~~~~~er~--v~~rE~~~g~Y~  315 (437)
                      +|||.....-+.+-+++-++.+.+|-+- .+.+..+. -.+.+....  +.+.....--....||.  .+.|=+... .+
T Consensus         2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~er~~G~l~rl~~~P-~~   77 (232)
T TIGR00025         2 LRVGAQIILTMFIPITFMVGLNLLPGGS-VTHNRGATFIPVLMALAA--ISTAFTGQAIAVARDRRYGALKRLGATP-LP   77 (232)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhcCCc-cCCcchhHhhHHHHHHHH--HHHHHHHHHHHHHHHHHhCHHHHHhcCC-Cc
Confidence            6899988888888888777777777542 11111111 111110000  11111111112233433  333333332 37


Q ss_pred             hHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHH
Q 013741          316 EAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVP---NVLMGMGVGTA  392 (437)
Q Consensus       316 ~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~---~~~~a~~~~~~  392 (437)
                      +..|+++|.+..++..++..+++. +++++.|++...... ..++...+....+.+++.+++++++   +.+.+..+++.
T Consensus        78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~  155 (232)
T TIGR00025        78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL  155 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            899999999988888877665554 556677988654332 2333333333444566666666664   44444777788


Q ss_pred             HHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhh
Q 013741          393 LIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIM  433 (437)
Q Consensus       393 ~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~  433 (437)
                      ...+++++||.+.|.+.||.| ++| +.+++|++|+.+++-
T Consensus       156 ~~~p~~~lSG~~~P~~~mP~~-lq~-i~~~~P~t~~~~~~r  194 (232)
T TIGR00025       156 VWFIFALLSAGLVPLNLIPTW-IKW-FVRVQPSSYATEALR  194 (232)
T ss_pred             HHHHHHHHhheeeecccccHH-HHH-HHHhCcHHHHHHHHH
Confidence            888899999999999999985 899 999999999999863

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>PRK03918 chromosome segregation protein; Provisional

Probab=99.09  E-value=2.5e-10  Score=128.45  Aligned_cols=77  Identities=25%  Similarity=0.269  Sum_probs=68.3

Q ss_pred             ccCCCCHHHHHH------HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCe
Q 013741           31 HLRGISSGEKKR------LSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDD  104 (437)
Q Consensus        31 ~~~~lSgGerkR------v~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~  104 (437)
                      .+..||||||++      +++|++++.+|+++++||||+|||+..+..+.+.|+.++..+.++|+++|++  ++...||+
T Consensus       785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~  862 (880)
T PRK03918        785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADY  862 (880)
T ss_pred             ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCe
Confidence            456799999995      4555678899999999999999999999999999999887788999999996  36789999


Q ss_pred             EEEEe
Q 013741          105 LLLLS  109 (437)
Q Consensus       105 v~~L~  109 (437)
                      ++.|.
T Consensus       863 ~~~l~  867 (880)
T PRK03918        863 VIRVS  867 (880)
T ss_pred             EEEEE
Confidence            99998

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.06  E-value=6.1e-10  Score=126.77  Aligned_cols=79  Identities=19%  Similarity=0.203  Sum_probs=67.3

Q ss_pred             cccCCCCHHHHHHHHHHHHHHh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhh
Q 013741           30 WHLRGISSGEKKRLSISIEILT--------QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYL  101 (437)
Q Consensus        30 ~~~~~lSgGerkRv~ia~~l~~--------~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~  101 (437)
                      ..+++|||||++|++||++|+.        +|++||+||||+|||+.+...+++.|+.+++.|++|++++|.+. -.-.+
T Consensus       945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i 1023 (1047)
T PRK10246        945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERI 1023 (1047)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhc
Confidence            4568899999999999999996        89999999999999999999999999999989999999999642 23333


Q ss_pred             cCeEEEEe
Q 013741          102 FDDLLLLS  109 (437)
Q Consensus       102 fd~v~~L~  109 (437)
                      -.+|.|-.
T Consensus      1024 ~~qi~V~k 1031 (1047)
T PRK10246       1024 PVQIKVKK 1031 (1047)
T ss_pred             cceEEEEE
Confidence            44555554

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.04  E-value=5.4e-10  Score=108.63  Aligned_cols=77  Identities=16%  Similarity=0.256  Sum_probs=62.4

Q ss_pred             cCCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741           32 LRGISSGEKKRLSISIEIL---------TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF  102 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l~---------~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~f  102 (437)
                      .+-+|+||||++++|++|+         .+|+++++||||++||+..+..+.+.+++++   . +++++|+. ..+.+.+
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q-~ii~~~~~-~~~~~~~  255 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---Q-TFVTTTDL-ADFDALW  255 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---C-EEEEeCCc-hhccchh
Confidence            3458999999999999985         7999999999999999999999999998753   3 45555543 2456666


Q ss_pred             ---CeEEEEeCCeE
Q 013741          103 ---DDLLLLSNGET  113 (437)
Q Consensus       103 ---d~v~~L~~G~~  113 (437)
                         ++++.+++|++
T Consensus       256 ~~~~~i~~l~~g~i  269 (270)
T cd03242         256 LRRAQIFRVDAGTL  269 (270)
T ss_pred             ccCccEEEEeCcEE
Confidence               67899999985

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK01156 chromosome segregation protein; Provisional

Probab=98.99  E-value=3.1e-09  Score=119.79  Aligned_cols=77  Identities=19%  Similarity=0.266  Sum_probs=66.5

Q ss_pred             ccCCCCHHHHHHHHH------HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c-C-CEEEEEecCCchHHHhh
Q 013741           31 HLRGISSGEKKRLSI------SIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D-G-RIVVCSIHQPSSHLFYL  101 (437)
Q Consensus        31 ~~~~lSgGerkRv~i------a~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~-g-~tvi~t~hqp~~~i~~~  101 (437)
                      .+..||||||+|+++      |++++.+|++++|||||+|||+.....+.+.++.... . | .++|+++|++.  ....
T Consensus       798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~  875 (895)
T PRK01156        798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV  875 (895)
T ss_pred             ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence            467899999999975      4888999999999999999999999999999986543 3 3 48999999974  5578


Q ss_pred             cCeEEEEe
Q 013741          102 FDDLLLLS  109 (437)
Q Consensus       102 fd~v~~L~  109 (437)
                      +|+++.+.
T Consensus       876 ~d~ii~~~  883 (895)
T PRK01156        876 ADVAYEVK  883 (895)
T ss_pred             cCeEEEEE
Confidence            99999997

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.97  E-value=9.4e-10  Score=108.51  Aligned_cols=110  Identities=25%  Similarity=0.359  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhcCC
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLK-CIALDGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~-~l~~~g~   85 (437)
                      .+.++..++.+.|.|...-.-|+-..-.||-|||||++.-.+++-+-+|+++||=-+.-||.-+....+.+- .+++.|+
T Consensus       421 ~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGK  500 (546)
T COG4615         421 PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGK  500 (546)
T ss_pred             hHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCC
Confidence            357888999999887654444444456799999999999999999999999999999999999999987654 5566899


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeC
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD  118 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~  118 (437)
                      ||+.++|+.  .-|..+||++.+.+|+++..-+
T Consensus       501 TI~aIsHDd--~YF~~ADrll~~~~G~~~e~tg  531 (546)
T COG4615         501 TIFAISHDD--HYFIHADRLLEMRNGQLSELTG  531 (546)
T ss_pred             eEEEEecCc--hhhhhHHHHHHHhcCceeeccc
Confidence            999999995  4689999999999999987643

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=98.95  E-value=3.7e-09  Score=98.47  Aligned_cols=115  Identities=16%  Similarity=0.052  Sum_probs=94.3

Q ss_pred             chHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q 013741          315 GEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALI  394 (437)
Q Consensus       315 ~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~  394 (437)
                      +.+.++++|.+..++..++.+++...+.|++.|++.+  +++.+++.+++...+..+++.++++.+++...+  .+....
T Consensus        58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~~  133 (208)
T TIGR03062        58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVLL  133 (208)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHHH
Confidence            4567799999999999999999999999999999874  566667777777778888999999998876543  333444


Q ss_pred             HHHHHhhccccCCCCcccccccccccccChhHHHHHHhhhh
Q 013741          395 VLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIMED  435 (437)
Q Consensus       395 ~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~N  435 (437)
                      .+.++++|.+.|.+.+|.| ++| +.+++|++|+.+++-.+
T Consensus       134 ~~~~~~sG~~~P~~~~P~~-~~~-i~~~~P~t~~~~~~r~~  172 (208)
T TIGR03062       134 VLQLGSSGGTFPIELLPAF-FQA-IHPFLPMTYSVNGLRQL  172 (208)
T ss_pred             HHHHccCCCccchhhCHHH-HHH-hhhhCcHHHHHHHHHHH
Confidence            5566678988999999985 899 99999999999998543

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>TIGR00606 rad50 rad50

Probab=98.90  E-value=2.7e-09  Score=124.31  Aligned_cols=69  Identities=23%  Similarity=0.238  Sum_probs=61.1

Q ss_pred             CCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----cCCEEEEEecCCchHHHhh
Q 013741           33 RGISSGEKK------RLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-----DGRIVVCSIHQPSSHLFYL  101 (437)
Q Consensus        33 ~~lSgGerk------Rv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tvi~t~hqp~~~i~~~  101 (437)
                      ..||||||+      |++||++++.+|++|+|||||+|||+.+...+.+.|.++..     .|.++|+++|++. .+..+
T Consensus      1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~ 1276 (1311)
T TIGR00606      1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELL 1276 (1311)
T ss_pred             CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHH
Confidence            469999999      99999999999999999999999999999999999988742     4789999999974 56665


Q ss_pred             c
Q 013741          102 F  102 (437)
Q Consensus       102 f  102 (437)
                      +
T Consensus      1277 ~ 1277 (1311)
T TIGR00606      1277 G 1277 (1311)
T ss_pred             h
Confidence            4

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK15066 inner membrane transport permease; Provisional

Probab=98.90  E-value=1.1e-07  Score=91.74  Aligned_cols=202  Identities=15%  Similarity=0.145  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHHhhhChHH-HHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHHHH----hhh-hhhh
Q 013741          224 WKQLCILSHRSFLNMLRDMGY-YWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICL----SVG-GLPS  297 (437)
Q Consensus       224 ~~Q~~~L~~R~~~~~~Rd~~~-~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~~~----~~~-~~~~  297 (437)
                      |+-++.+.+|+.+...||+.. ...-+++.++..++.|.++-....+..+.   ....|++.+.+...    +.. ....
T Consensus         7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~---~y~~fl~pGll~~~~~~~~~~~~~~~   83 (257)
T PRK15066          7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGF---SYMQFIVPGLIMMSVITNSYSNVASS   83 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCC---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667889999999999999854 33345556667777776653210110111   11222222222211    111 1122


Q ss_pred             HHHHHHH-hhhccCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 013741          298 FIEEHKA-SYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVV  376 (437)
Q Consensus       298 ~~~er~v-~~rE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i  376 (437)
                      +..+|.. ..++...---++..+.+++++...-..++..++..++.+...|.+..  ....+...+++........+.++
T Consensus        84 i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~  161 (257)
T PRK15066         84 FFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLIN  161 (257)
T ss_pred             HHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            2233311 01111111247778899999987766666655555555444466543  22222222223223233457888


Q ss_pred             HHhccchHHHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHh
Q 013741          377 ALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPI  432 (437)
Q Consensus       377 ~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l  432 (437)
                      +.+.++......+.+.+..+++..||.+.|.+++|.+ ++| +.++||+.|..|++
T Consensus       162 a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~-l~~-i~~~nPlt~~v~~~  215 (257)
T PRK15066        162 AVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPF-WQG-VSKLNPIVYMVNAF  215 (257)
T ss_pred             HHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHH-HHH-HHHHCcHHHHHHHH
Confidence            8888888887888888888899999999999999984 677 99999999999875

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=3.6e-09  Score=105.39  Aligned_cols=81  Identities=27%  Similarity=0.383  Sum_probs=68.6

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      +...+.|-.+||...++|.    .++.||||||-||++|.--++.|+||+|||||++||..+...+.+.|.+.   .-.|
T Consensus       682 q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgV  754 (807)
T KOG0066|consen  682 QEARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGV  754 (807)
T ss_pred             HHHHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcE
Confidence            3456678888998888774    35789999999999999999999999999999999999999888888764   3478


Q ss_pred             EEEecCCc
Q 013741           88 VCSIHQPS   95 (437)
Q Consensus        88 i~t~hqp~   95 (437)
                      |+++|+-+
T Consensus       755 i~VsHDeR  762 (807)
T KOG0066|consen  755 IMVSHDER  762 (807)
T ss_pred             EEEecccc
Confidence            88999854

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.86  E-value=3.3e-09  Score=122.45  Aligned_cols=76  Identities=21%  Similarity=0.249  Sum_probs=66.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEE
Q 013741           31 HLRGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLL  106 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~  106 (437)
                      .+..||||||+|++||++++    .+|++++|||||+|||+.....+.+.|+.+++. .++|+++|+|.  ....+|+++
T Consensus      1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~-~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168      1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKN-TQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred             cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccC-CEEEEEEcChh--HHHHhhhHe
Confidence            45689999999999999985    577999999999999999999999999998754 78999999976  457799998


Q ss_pred             EEe
Q 013741          107 LLS  109 (437)
Q Consensus       107 ~L~  109 (437)
                      ...
T Consensus      1163 ~~~ 1165 (1179)
T TIGR02168      1163 GVT 1165 (1179)
T ss_pred             eee
Confidence            765

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK00064 recF recombination protein F; Reviewed

Probab=98.84  E-value=7.7e-09  Score=104.64  Aligned_cols=79  Identities=23%  Similarity=0.332  Sum_probs=65.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhh
Q 013741           31 HLRGISSGEKKRLSISIEIL---------TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYL  101 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~l~---------~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~  101 (437)
                      ....+|.||+|++.+|+.|+         .+|++++||||+++||+..+..+.+.++++   +..+++|+|++. .+...
T Consensus       270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~  345 (361)
T PRK00064        270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADL  345 (361)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhh
Confidence            34579999999999999885         799999999999999999999999988764   357888888764 34444


Q ss_pred             c--CeEEEEeCCeE
Q 013741          102 F--DDLLLLSNGET  113 (437)
Q Consensus       102 f--d~v~~L~~G~~  113 (437)
                      +  +++..+.+|++
T Consensus       346 ~~~~~i~~v~~G~i  359 (361)
T PRK00064        346 LENAKIFHVEQGKI  359 (361)
T ss_pred             hccCcEEEEeCCEE
Confidence            3  47888999986

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.82  E-value=1.4e-08  Score=94.42  Aligned_cols=85  Identities=16%  Similarity=0.121  Sum_probs=70.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741           33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQ-VLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG  111 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G  111 (437)
                      ..+++++| |++.+.+++.+|+++++||||+|+|+.....+.. .++.+.+.+.++|+++|++  ++.+.+|++..+..|
T Consensus        90 s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~  166 (202)
T cd03243          90 STFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNL  166 (202)
T ss_pred             eeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEE
Confidence            34555554 5777788899999999999999999999888765 5677777789999999984  577789999999999


Q ss_pred             eEEEeeChh
Q 013741          112 ETIYFGDAK  120 (437)
Q Consensus       112 ~~v~~G~~~  120 (437)
                      ++...++..
T Consensus       167 ~~~~~~~~~  175 (202)
T cd03243         167 HMEELITTG  175 (202)
T ss_pred             EEEEEecCC
Confidence            999888653

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=98.82  E-value=1.2e-08  Score=92.79  Aligned_cols=109  Identities=23%  Similarity=0.294  Sum_probs=89.5

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI   86 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~t   86 (437)
                      +|-+++++.|.+.-.       .....+|-||||||.|++.|+..=++|+|||-|-.||..++..+.+.+|+-++ .|.|
T Consensus       128 ~Rre~LI~iLDIdl~-------WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~Rgat  200 (291)
T KOG2355|consen  128 ERREKLIDILDIDLR-------WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGAT  200 (291)
T ss_pred             hHhhhhhhheeccce-------EEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcE
Confidence            455666777665421       12345899999999999999999999999999999999999999999999887 6899


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      ||-.+|-= +-+..-..++..++.|+++-.-+.++..+
T Consensus       201 IVYATHIF-DGLe~Wpthl~yi~~Gkl~~~l~~~~i~e  237 (291)
T KOG2355|consen  201 IVYATHIF-DGLETWPTHLVYIKSGKLVDNLKYQKIKE  237 (291)
T ss_pred             EEEEeeec-cchhhcchhEEEecCCeeeeccccchhhh
Confidence            99999974 34666678999999999998666665544

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.79  E-value=8.8e-09  Score=119.05  Aligned_cols=77  Identities=17%  Similarity=0.154  Sum_probs=68.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEE
Q 013741           31 HLRGISSGEKKRLSISIEILT----QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLL  106 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~l~~----~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~  106 (437)
                      .+..||||||++++||..++.    .|++++||||++|||+..+..+.+.|++++.. ..+|+++|++.  ....+|+++
T Consensus      1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~-~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169      1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGE-AQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred             cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCC-CeEEEEECcHH--HHHhcceeE
Confidence            356899999999999999985    67999999999999999999999999998654 67899999974  678999999


Q ss_pred             EEeC
Q 013741          107 LLSN  110 (437)
Q Consensus       107 ~L~~  110 (437)
                      .+..
T Consensus      1148 ~~~~ 1151 (1164)
T TIGR02169      1148 GVTM 1151 (1164)
T ss_pred             eEEE
Confidence            8863

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.77  E-value=6e-09  Score=95.51  Aligned_cols=79  Identities=20%  Similarity=0.192  Sum_probs=56.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741           33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVI-QVLKCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~-~~l~~l~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~  110 (437)
                      ..+|+|++|...+. ..+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|+++|.+  ++.+++|+.--+.+
T Consensus        60 s~fs~~~~~l~~~l-~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~  136 (185)
T smart00534       60 STFMVEMKETANIL-KNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN  136 (185)
T ss_pred             cHHHHHHHHHHHHH-HhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence            35777666533333 334599999999999999999887765 567778774 88999999996  57787775333334


Q ss_pred             CeEE
Q 013741          111 GETI  114 (437)
Q Consensus       111 G~~v  114 (437)
                      ++..
T Consensus       137 ~~~~  140 (185)
T smart00534      137 LHMS  140 (185)
T ss_pred             EEEE
Confidence            4433

>PRK02224 chromosome segregation protein; Provisional

Probab=98.76  E-value=2.1e-08  Score=112.95  Aligned_cols=77  Identities=29%  Similarity=0.361  Sum_probs=66.4

Q ss_pred             cCCCCHHHHH------HHHHHHHHHhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-EEEEEecCCchHH
Q 013741           32 LRGISSGEKK------RLSISIEILTQ-----P-TVLLLDEPTSGLDSASAFFVIQVLKCIALDGR-IVVCSIHQPSSHL   98 (437)
Q Consensus        32 ~~~lSgGerk------Rv~ia~~l~~~-----p-~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~-tvi~t~hqp~~~i   98 (437)
                      +..||||||+      |++++++++.+     | .++++||||+|||+.....+.+.|+.++..|. +||+++|++.  .
T Consensus       779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~  856 (880)
T PRK02224        779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L  856 (880)
T ss_pred             hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence            5689999999      88888888863     3 67999999999999999999999999987664 7999999974  4


Q ss_pred             HhhcCeEEEEeC
Q 013741           99 FYLFDDLLLLSN  110 (437)
Q Consensus        99 ~~~fd~v~~L~~  110 (437)
                      ...+|+++.+.+
T Consensus       857 ~~~ad~~~~~~~  868 (880)
T PRK02224        857 VGAADDLVRVEK  868 (880)
T ss_pred             HHhcCeeEEeec
Confidence            567999999974

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=3.6e-09  Score=105.44  Aligned_cols=104  Identities=22%  Similarity=0.354  Sum_probs=85.6

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      .+...+|..||.+.-    ..+.+...+|||=|-||++||+|...|.+|.|||||+.||-.....+-+.|+.+.   +|.
T Consensus       390 arARRILAGLGFskE----MQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTL  462 (807)
T KOG0066|consen  390 ARARRILAGLGFSKE----MQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTL  462 (807)
T ss_pred             hHHHHHHhhcCCChh----HhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---hee
Confidence            455667777777532    2334456799999999999999999999999999999999999999999999886   499


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEEE-eeCh
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSNGETIY-FGDA  119 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~-~G~~  119 (437)
                      ++++|+- ..+-..|..|+.|++-++-| .|..
T Consensus       463 LIVSHDQ-gFLD~VCtdIIHLD~qkLhyYrGNY  494 (807)
T KOG0066|consen  463 LIVSHDQ-GFLDSVCTDIIHLDNQKLHYYRGNY  494 (807)
T ss_pred             EEEeccc-chHHHHHHHHhhhhhhhhhhhcchH
Confidence            9999984 57889999999999777654 3544

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=98.71  E-value=6e-08  Score=100.03  Aligned_cols=102  Identities=21%  Similarity=0.231  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHcCCcccccccccC------cccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQACAETKIGN------WHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~------~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      ++++...|+..+|+|..+..=|=      ..-..||+||+||++.||.+.++|++-+|||.||.+|-.....+.+.+++ 
T Consensus       537 d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~-  615 (659)
T KOG0060|consen  537 DEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE-  615 (659)
T ss_pred             HHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH-
Confidence            45677788888888877643221      13467999999999999999999999999999999999888888877765 


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEe-CCeE
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLS-NGET  113 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~-~G~~  113 (437)
                        .|.|.|-+.|.++  +.+.=|.++-|+ +|+.
T Consensus       616 --~giT~iSVgHRkS--L~kfHd~~L~~~g~g~w  645 (659)
T KOG0060|consen  616 --MGITFISVGHRKS--LWKFHDYVLRMDGRGSW  645 (659)
T ss_pred             --cCCeEEEeccHHH--HHhhhhEEEEecCCCce
Confidence              5899999999976  444447777776 3443

>PRK14079 recF recombination protein F; Provisional

Probab=98.64  E-value=6.3e-08  Score=97.53  Aligned_cols=75  Identities=20%  Similarity=0.265  Sum_probs=63.6

Q ss_pred             CCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcC
Q 013741           33 RGISSGEKKRLSISIEIL---------TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFD  103 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~---------~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd  103 (437)
                      .-+|+||+|++.+|..|+         .+|++++||||+++||...+..+.+.|.+.   ..++|.+++.|.     .+|
T Consensus       262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~~-----~~~  333 (349)
T PRK14079        262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAPP-----GAA  333 (349)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCCC-----CCc
Confidence            357999999999999998         899999999999999999999999888653   256666666554     589


Q ss_pred             eEEEEeCCeEEE
Q 013741          104 DLLLLSNGETIY  115 (437)
Q Consensus       104 ~v~~L~~G~~v~  115 (437)
                      +++.+.+|++.-
T Consensus       334 ~~~~~~~~~~~~  345 (349)
T PRK14079        334 LTLRIEAGVFTP  345 (349)
T ss_pred             eEEEEeccEecC
Confidence            999999988643

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=98.62  E-value=3.4e-07  Score=85.98  Aligned_cols=88  Identities=23%  Similarity=0.357  Sum_probs=65.2

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      +.+.+.++..++...           .+|||||++++||.-|+    .+.++++||||.++||...+..+.+.|+++.++
T Consensus       121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~  189 (220)
T PF02463_consen  121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ  189 (220)
T ss_dssp             HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT
T ss_pred             ccccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            445566666665432           59999999999986663    466899999999999999999999999998754


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEe
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLS  109 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~  109 (437)
                       .-+|+++|++  .++..+|+.+-+.
T Consensus       190 -~Q~ii~Th~~--~~~~~a~~~~~v~  212 (220)
T PF02463_consen  190 -SQFIITTHNP--EMFEDADKLIGVT  212 (220)
T ss_dssp             -SEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred             -cccccccccc--ccccccccccccc
Confidence             6788899995  5889999888764

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>TIGR00611 recf recF protein

Probab=98.59  E-value=8e-08  Score=97.26  Aligned_cols=60  Identities=22%  Similarity=0.351  Sum_probs=55.1

Q ss_pred             CCCCHHHHHHHHHHHHHHh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 013741           33 RGISSGEKKRLSISIEILT---------QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS   95 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~~---------~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~   95 (437)
                      ..+|.||+|++.+|..|+.         +|+|++||||+++||...+..+++.|++.   |..+++|+|++.
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~  342 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD  342 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence            4689999999999999999         99999999999999999999999999764   679999999864

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.50  E-value=4.3e-07  Score=102.52  Aligned_cols=87  Identities=22%  Similarity=0.261  Sum_probs=73.7

Q ss_pred             cccccccCc--ccCCCCHHHHHHHHHHHHHH------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Q 013741           22 CAETKIGNW--HLRGISSGEKKRLSISIEIL------TQ--PTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSI   91 (437)
Q Consensus        22 ~~~~~vg~~--~~~~lSgGerkRv~ia~~l~------~~--p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~   91 (437)
                      ..+...|+.  .+..|||||+-.++||.+|+      .+  -+.+||||||..||+.....+++.|..+...+++|++++
T Consensus       801 ~~~~~~~~~~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIIS  880 (908)
T COG0419         801 VVVVYDGGEVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIIS  880 (908)
T ss_pred             EEEEecCCCccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            344445544  67789999999888877663      45  689999999999999999999999999999999999999


Q ss_pred             cCCchHHHhhcCeEEEEeC
Q 013741           92 HQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        92 hqp~~~i~~~fd~v~~L~~  110 (437)
                      |++  ++.+.+|.++.+.+
T Consensus       881 H~e--el~e~~~~~i~V~k  897 (908)
T COG0419         881 HVE--ELKERADVRIRVKK  897 (908)
T ss_pred             ChH--HHHHhCCeEEEEEe
Confidence            995  67889999999874

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.49  E-value=2.1e-07  Score=86.62  Aligned_cols=67  Identities=18%  Similarity=0.317  Sum_probs=53.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741           33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVI-QVLKCIALDGRIVVCSIHQPSSHLFYLF  102 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~-~~l~~l~~~g~tvi~t~hqp~~~i~~~f  102 (437)
                      +.+|+|+||+ +.+..++++|++++||||++|+|+.....+. ..++.+.+.|.++|+++|..  ++.+.+
T Consensus        90 S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~--~l~~~~  157 (204)
T cd03282          90 STFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFR--DIAAIL  157 (204)
T ss_pred             hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH--HHHHHh
Confidence            4588888865 5667788999999999999999998766654 56888888899999999985  344443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.49  E-value=3.3e-07  Score=83.44  Aligned_cols=80  Identities=15%  Similarity=0.098  Sum_probs=65.8

Q ss_pred             cccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCEEEEEecCCch----
Q 013741           30 WHLRGISSGEKK------RLSISIEILTQPTVLLLDEPTSGLD---SASAFFVIQVLKCIALDGRIVVCSIHQPSS----   96 (437)
Q Consensus        30 ~~~~~lSgGerk------Rv~ia~~l~~~p~ll~lDEPtsgLD---~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~----   96 (437)
                      ..+..+|+|+++      +.........+|+++++|||++.+|   ......+.+.++.+++.|.|+|+++|....    
T Consensus        67 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~  146 (187)
T cd01124          67 ADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTG  146 (187)
T ss_pred             cCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcc
Confidence            345578999988      4444455667999999999999999   888888889999998889999999998653    


Q ss_pred             ----HHHhhcCeEEEEe
Q 013741           97 ----HLFYLFDDLLLLS  109 (437)
Q Consensus        97 ----~i~~~fd~v~~L~  109 (437)
                          .+..++|.++.|.
T Consensus       147 ~~~~~~~~~aD~ii~l~  163 (187)
T cd01124         147 FGGGDVEYLVDGVIRLR  163 (187)
T ss_pred             cCcCceeEeeeEEEEEE
Confidence                2678899999987

A related protein is found in archaea.

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.48  E-value=4e-07  Score=90.70  Aligned_cols=100  Identities=26%  Similarity=0.380  Sum_probs=82.6

Q ss_pred             HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEE
Q 013741           10 VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVV   88 (437)
Q Consensus        10 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi   88 (437)
                      ..++|...||.+.-   .-....+.||-|||.|+.||..+...|.+++.||--+.||..++..+.+-+.++++ .|.|++
T Consensus       486 AveILnraGlsDAv---lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTli  562 (593)
T COG2401         486 AVEILNRAGLSDAV---LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI  562 (593)
T ss_pred             HHHHHHhhccchhh---hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEE
Confidence            45678888886432   22234568999999999999999999999999999999999999999999999998 699999


Q ss_pred             EEecCCchHHHhh-cCeEEEEeCCeE
Q 013741           89 CSIHQPSSHLFYL-FDDLLLLSNGET  113 (437)
Q Consensus        89 ~t~hqp~~~i~~~-fd~v~~L~~G~~  113 (437)
                      +++|.|. -+-.+ -|+++++.-|.+
T Consensus       563 vvThrpE-v~~AL~PD~li~vgYg~v  587 (593)
T COG2401         563 VVTHRPE-VGNALRPDTLILVGYGKV  587 (593)
T ss_pred             EEecCHH-HHhccCCceeEEeecccc
Confidence            9999984 34444 488888876654

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.47  E-value=2.8e-07  Score=92.06  Aligned_cols=97  Identities=25%  Similarity=0.337  Sum_probs=86.6

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      +..+++++.+.|.+..|.-+.     .+||||-||.+||++-+.+.++...|||.+-||...+.+....++.+....+=|
T Consensus       192 ~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~Yi  266 (592)
T KOG0063|consen  192 DNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYI  266 (592)
T ss_pred             ccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeE
Confidence            467789999999888887665     599999999999999999999999999999999999999999999999988999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeC
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~  110 (437)
                      |++.|+.+ -+-.+.|-+..|.+
T Consensus       267 IVVEHDLs-VLDylSDFiCcLYG  288 (592)
T KOG0063|consen  267 IVVEHDLS-VLDYLSDFICCLYG  288 (592)
T ss_pred             EEEEeech-HHHhhhcceeEEec
Confidence            99999975 45667788888874

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.44  E-value=1.1e-06  Score=81.63  Aligned_cols=71  Identities=25%  Similarity=0.213  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhh--cCeEEEE
Q 013741           37 SGEKKRLSISIEILT--QPTVLLLDEPTSGLDSASAFFVIQ-VLKCIALDGRIVVCSIHQPSSHLFYL--FDDLLLL  108 (437)
Q Consensus        37 gGerkRv~ia~~l~~--~p~ll~lDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~t~hqp~~~i~~~--fd~v~~L  108 (437)
                      ..|++|+.-..+.+.  +|+++++|||++|+|+..+..+.. .++++++.|.++|+++|++. .+..+  .+++..+
T Consensus        88 ~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~-~~~~~~~~~~v~~~  163 (199)
T cd03283          88 YAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLE-LADLLDLDSAVRNY  163 (199)
T ss_pred             HHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHH-HHHhhhcCCCeEEE
Confidence            456677777777777  999999999999999999987754 78888888899999999975 34333  3444443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>TIGR01248 drrC daunorubicin resistance protein C

Probab=98.42  E-value=2.7e-06  Score=75.43  Aligned_cols=128  Identities=16%  Similarity=-0.024  Sum_probs=87.2

Q ss_pred             HHHHHhhhccCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 013741          300 EEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFS--HYCHFCLSLFCCVSIVETCMMVVA  377 (437)
Q Consensus       300 ~er~v~~rE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~--~f~~f~l~~~~~~~~~~~~~~~i~  377 (437)
                      .|+..+.|-+..-. +++.++++|++...-..++..++..++.+. .|.+...+  ..+.+.+...+.......++..++
T Consensus        16 r~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a   93 (152)
T TIGR01248        16 REIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMA   93 (152)
T ss_pred             HHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666665554 789999999999998888888777777754 48876632  122222222333333344555555


Q ss_pred             HhccchHHHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHh
Q 013741          378 LLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPI  432 (437)
Q Consensus       378 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l  432 (437)
                      ...++.+. ......++.++...||.+.|.+++|.| .+| +.+++|++|+.+++
T Consensus        94 ~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~w-lq~-ia~~~Plt~~~~~~  145 (152)
T TIGR01248        94 LRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDW-AQP-LIAHQPISPAIEAC  145 (152)
T ss_pred             HHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHH-HHH-HHhhCCccHHHHHH
Confidence            55555543 333466677777888888999999984 788 99999999999986

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.42  E-value=7.9e-07  Score=83.45  Aligned_cols=64  Identities=33%  Similarity=0.474  Sum_probs=54.7

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 013741           32 LRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS   95 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l~~~p---~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~   95 (437)
                      ...+|.|+||.+.+...+...+   .++++|||-++|++..+..+++.|+++++.+.-+|+|||.|.
T Consensus       234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~  300 (303)
T PF13304_consen  234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF  300 (303)
T ss_dssp             GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred             eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence            4567999999999998888877   899999999999999999999999988877789999999984

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.36  E-value=5.2e-07  Score=84.81  Aligned_cols=86  Identities=19%  Similarity=0.139  Sum_probs=62.2

Q ss_pred             CCCCHHHHHH----HHHHHH--HHhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCchHHHhhc
Q 013741           33 RGISSGEKKR----LSISIE--ILTQPTVLLLDEP---TSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQPSSHLFYLF  102 (437)
Q Consensus        33 ~~lSgGerkR----v~ia~~--l~~~p~ll~lDEP---tsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~hqp~~~i~~~f  102 (437)
                      ..+|+|+.++    ..++..  .+.+|++++||||   |+++|....  ....++.+.+. +.++|+++|+.  ++.++.
T Consensus        84 ~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~  159 (216)
T cd03284          84 DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELE  159 (216)
T ss_pred             hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHh
Confidence            3567776653    234444  4579999999999   888887542  23455566665 88999999994  688889


Q ss_pred             CeEEEEeCCeEEEeeChhHH
Q 013741          103 DDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus       103 d~v~~L~~G~~v~~G~~~~~  122 (437)
                      |++.-+.+|++...+..++.
T Consensus       160 ~~~~~v~~~~~~~~~~~~~l  179 (216)
T cd03284         160 GKLPRVKNFHVAVKEKGGGV  179 (216)
T ss_pred             hcCCCeEEEEEEEEeeCCeE
Confidence            98888888988877665543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.32  E-value=8e-07  Score=103.67  Aligned_cols=59  Identities=20%  Similarity=0.322  Sum_probs=51.8

Q ss_pred             cCCCCHHHHHHHH----HHHH--------HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 013741           32 LRGISSGEKKRLS----ISIE--------ILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ   93 (437)
Q Consensus        32 ~~~lSgGerkRv~----ia~~--------l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq   93 (437)
                      ..++|||||||+.    +|.+        +..+|++++||||++|||+..+..+++.++++   |.++|+|+|.
T Consensus      1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680      1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred             ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence            4689999999996    4544        55899999999999999999999999999888   6889988876

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=98.28  E-value=7.5e-07  Score=91.10  Aligned_cols=85  Identities=25%  Similarity=0.243  Sum_probs=69.0

Q ss_pred             HHHHHHHHHcCCcccccccccCc----ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            8 DIVEETIIKMGLQACAETKIGNW----HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~----~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      +..+.+|+.+.|+|.+..-.|=.    .-.-||||||||+.+||.+-++|+.-+|||.||.........+.+..|+   .
T Consensus       582 ~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~  658 (728)
T KOG0064|consen  582 QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---A  658 (728)
T ss_pred             HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---c
Confidence            45667788888887776554421    2346999999999999999999999999999999988877777776654   5


Q ss_pred             CCEEEEEecCCc
Q 013741           84 GRIVVCSIHQPS   95 (437)
Q Consensus        84 g~tvi~t~hqp~   95 (437)
                      |.+.+-++|+|+
T Consensus       659 gi~llsithrps  670 (728)
T KOG0064|consen  659 GISLLSITHRPS  670 (728)
T ss_pred             CceEEEeecCcc
Confidence            889999999997

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.24  E-value=1.9e-06  Score=95.23  Aligned_cols=82  Identities=15%  Similarity=0.190  Sum_probs=64.3

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741           32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQ-VLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~  110 (437)
                      ...+|+|+++++.|++++ ++|+++++|||++|+|+.....+.. .++.+.+.|.++|+++|++. ......|+..+. +
T Consensus       388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e-l~~~~~~~~~v~-~  464 (782)
T PRK00409        388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE-LKALMYNREGVE-N  464 (782)
T ss_pred             hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH-HHHHHhcCCCeE-E
Confidence            456899999999999988 8999999999999999999988864 67788888899999999954 233334544433 4


Q ss_pred             CeEEEe
Q 013741          111 GETIYF  116 (437)
Q Consensus       111 G~~v~~  116 (437)
                      +.+.+.
T Consensus       465 ~~~~~d  470 (782)
T PRK00409        465 ASVEFD  470 (782)
T ss_pred             EEEEEe
Confidence            555553

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.23  E-value=1.4e-06  Score=87.15  Aligned_cols=96  Identities=21%  Similarity=0.388  Sum_probs=79.3

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA-LDGRI   86 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~-~~g~t   86 (437)
                      +.+.++++-|.+++..|..+     ++|||||.|||+++..|-..+++++.|||.+-||+..+....+.+++.- +.++|
T Consensus       435 qF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakkt  509 (592)
T KOG0063|consen  435 QFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKT  509 (592)
T ss_pred             HHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccch
Confidence            45778888888888777766     5799999999999999999999999999999999999999999998865 36789


Q ss_pred             EEEEecCCchHHHhhcCeEEEEe
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLS  109 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~  109 (437)
                      -.++-|+--- .-.++|||++..
T Consensus       510 afvVEhdfIm-aTYladrvivf~  531 (592)
T KOG0063|consen  510 AFVVEHDFIM-ATYLADRVIVFE  531 (592)
T ss_pred             hhhhhhHHHH-HHhhcceeEEEe
Confidence            8999998422 224678887654

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=98.22  E-value=4e-05  Score=73.49  Aligned_cols=114  Identities=17%  Similarity=0.245  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHH
Q 013741          317 AVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVA-LLVPNVLMGMGVGTALIV  395 (437)
Q Consensus       317 ~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~-~~~~~~~~a~~~~~~~~~  395 (437)
                      ..+++++.+...-...+...+...+..+..|. .....+..+...+.+......++|.+++ ....+...+..++..+..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~  209 (286)
T COG0842         131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLIL  209 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            45666777766666666666666666666662 2334444455555555555556777555 366778888888888989


Q ss_pred             HHHHhhccccCCCCcccccccccccccChhHHHHHHhh
Q 013741          396 LMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIM  433 (437)
Q Consensus       396 ~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~  433 (437)
                      ++..++|.+.|.+.+|.+ .+| +.+++|..|+.+++-
T Consensus       210 ~~~~l~g~~~p~~~~p~~-~~~-i~~~~P~t~~~~~~~  245 (286)
T COG0842         210 PLGFLSGVFFPLELLPAW-LQG-ISYINPLTYAIDALR  245 (286)
T ss_pred             HHHHHccccCchhhhHHH-HHH-HHHHccHHHHHHHHH
Confidence            999999999999999984 788 999999999999874

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.20  E-value=3.7e-06  Score=67.75  Aligned_cols=49  Identities=27%  Similarity=0.440  Sum_probs=37.1

Q ss_pred             ccCCCCHHHHH-HHHHHHHH------Hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741           31 HLRGISSGEKK-RLSISIEI------LT------QPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus        31 ~~~~lSgGerk-Rv~ia~~l------~~------~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      ...++|||||| .+.++..+      -.      .|++++||||+++||...+..+++.|++
T Consensus        29 ~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   29 SFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             EGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             cCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            34679999994 44443333      22      3789999999999999999999999874

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.19  E-value=3.4e-06  Score=79.13  Aligned_cols=62  Identities=21%  Similarity=0.244  Sum_probs=51.4

Q ss_pred             CCC--HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhc---CCEEEEEecCCc
Q 013741           34 GIS--SGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFV-IQVLKCIALD---GRIVVCSIHQPS   95 (437)
Q Consensus        34 ~lS--gGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i-~~~l~~l~~~---g~tvi~t~hqp~   95 (437)
                      ++|  .-|-||+++++.++.+|+++++|||++|+|+.....+ ...++++.+.   +.++|+++|.+.
T Consensus        88 ~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~  155 (213)
T cd03281          88 GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE  155 (213)
T ss_pred             ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence            455  5678999999999999999999999999999765544 5688888764   348999999964

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01069 mutS2 MutS2 family protein

Probab=98.06  E-value=6.9e-06  Score=90.63  Aligned_cols=64  Identities=22%  Similarity=0.258  Sum_probs=57.0

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCEEEEEecCCch
Q 013741           32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFV-IQVLKCIALDGRIVVCSIHQPSS   96 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i-~~~l~~l~~~g~tvi~t~hqp~~   96 (437)
                      ...+|+|+++++.|...+ .+|+++++|||++|+|+.....+ ...++.+++.|.++|+++|.+.-
T Consensus       383 LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL  447 (771)
T TIGR01069       383 LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL  447 (771)
T ss_pred             hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence            457999999999998776 89999999999999999999998 57888888889999999999653

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PRK13695 putative NTPase; Provisional

Probab=98.04  E-value=1.1e-05  Score=72.98  Aligned_cols=81  Identities=11%  Similarity=0.187  Sum_probs=64.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741           33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~  112 (437)
                      ..+||+|+.+..+....+.+|+++++||| ..++..+ ....+.+.++.+.|.++|+++|..  .+....|++..+.+|+
T Consensus        77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~-~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~~~  152 (174)
T PRK13695         77 VNLEDLERIGIPALERALEEADVIIIDEI-GKMELKS-PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPGGR  152 (174)
T ss_pred             EehHHHHHHHHHHHHhccCCCCEEEEECC-Ccchhhh-HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCCcE
Confidence            35899999999999999999999999995 2233333 445677777667789999999983  4567789999999999


Q ss_pred             EEEee
Q 013741          113 TIYFG  117 (437)
Q Consensus       113 ~v~~G  117 (437)
                      ++..-
T Consensus       153 i~~~~  157 (174)
T PRK13695        153 VYELT  157 (174)
T ss_pred             EEEEc
Confidence            87763

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=98.00  E-value=0.00058  Score=65.21  Aligned_cols=191  Identities=9%  Similarity=0.051  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCC-CCChhhHhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHhh
Q 013741          228 CILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNV-GLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASY  306 (437)
Q Consensus       228 ~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~-~~~~~~i~~r~~~l~f~~~~~~~~~~~~~~~~~~er~v~~  306 (437)
                      +.+.||.++.+.|.|..+..-.+..++.|+.. ..+.+. +....+..+..+.+.+......+    .+|..  --..+.
T Consensus         2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~p~l--~~~~ia   74 (240)
T TIGR03518         2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPWVFLF----LIPAI--TMRSFA   74 (240)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHHHHHH----HHHHH--HHHHHH
Confidence            46889999999999998877666666656432 222111 10111111222211111111111    11211  124456


Q ss_pred             hccCCCCc--------chHHHHHHHHHHHhhHHHHHHH---hhhhhhhcccc--cccChHHHHHHHHHHHHHHHHHHHHH
Q 013741          307 RERISCHY--------GEAVFVLSNFLSSFPFLVILSI---SSGTILHYMVQ--FHPGFSHYCHFCLSLFCCVSIVETCM  373 (437)
Q Consensus       307 rE~~~g~Y--------~~~~y~la~~l~elP~~~~~~~---if~~i~Y~m~g--l~~~~~~f~~f~l~~~~~~~~~~~~~  373 (437)
                      |||++|..        ++..+.++|.++-+-..++..+   ++....++...  -..+.+.++...+..++...+..++|
T Consensus        75 ~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~aig  154 (240)
T TIGR03518        75 EERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYTAIG  154 (240)
T ss_pred             HHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            66766653        4678899999987655443322   12222211111  11234444433344444445666899


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhhccccCCCCc--ccccccccccccChhHHHHH
Q 013741          374 MVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDL--PKFFWQYPMSYITFAAWAIE  430 (437)
Q Consensus       374 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i--p~~~w~w~~~yisp~~y~~e  430 (437)
                      .++++++.|...|..++..+..  .++.|+-. ..++  |.+ ..| +.|+||..|..+
T Consensus       155 ~~iSsl~~~q~~a~~~~~~~~~--~l~~~~~~-l~~~~~~~~-~~~-l~~~sp~~~~~~  208 (240)
T TIGR03518       155 LFASSLTENQIVAFIIAVFLCF--LFYFGFDG-LASLLWGGS-AYT-ISELGLSYHYES  208 (240)
T ss_pred             HHHHHHhchHHHHHHHHHHHHH--HHHHHHHH-HhhhcchhH-HHH-HHHcCHHHHHHH
Confidence            9999999998887655443322  22223211 2333  542 456 999999777554

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.00  E-value=7.2e-06  Score=76.65  Aligned_cols=45  Identities=18%  Similarity=0.201  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 013741           38 GEKKRLSISIEILTQPTVLLLDEPT-----SGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus        38 GerkRv~ia~~l~~~p~ll~lDEPt-----sgLD~~~~~~i~~~l~~l~~   82 (437)
                      -|++++.||++++.+|+++++||||     +|||+..+..+.+.++++++
T Consensus       156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~  205 (215)
T PTZ00132        156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN  205 (215)
T ss_pred             HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence            3999999999999999999999999     99999999999999999875

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.82  E-value=4.7e-05  Score=73.84  Aligned_cols=68  Identities=18%  Similarity=0.222  Sum_probs=47.5

Q ss_pred             HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHH------------hhcCeEEEEeCCe
Q 013741           45 ISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLF------------YLFDDLLLLSNGE  112 (437)
Q Consensus        45 ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~------------~~fd~v~~L~~G~  112 (437)
                      ....+..+|+++++|||++.      ..+...++.+ ++|.++|+|+|.+..+-.            ..|||+++|++|+
T Consensus       187 ~~~i~~~~P~villDE~~~~------e~~~~l~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~  259 (270)
T TIGR02858       187 MMLIRSMSPDVIVVDEIGRE------EDVEALLEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK  259 (270)
T ss_pred             HHHHHhCCCCEEEEeCCCcH------HHHHHHHHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC
Confidence            34444479999999999742      3344444444 469999999998654222            6799999999887


Q ss_pred             EEEeeChhH
Q 013741          113 TIYFGDAKM  121 (437)
Q Consensus       113 ~v~~G~~~~  121 (437)
                        ..|.+++
T Consensus       260 --~~g~~~~  266 (270)
T TIGR02858       260 --GPGTVEA  266 (270)
T ss_pred             --CCCceee
Confidence              5565543

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=97.79  E-value=4e-05  Score=85.52  Aligned_cols=71  Identities=21%  Similarity=0.146  Sum_probs=61.6

Q ss_pred             HHhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCEEEEEecCCchH--------HHhhcCeEEEEeCCeEEEeeCh
Q 013741           49 ILTQPTVLLLDEPTSGL-DSASAFFVIQVLKCIALDGRIVVCSIHQPSSH--------LFYLFDDLLLLSNGETIYFGDA  119 (437)
Q Consensus        49 l~~~p~ll~lDEPtsgL-D~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~--------i~~~fd~v~~L~~G~~v~~G~~  119 (437)
                      +..+|+++++|||+.+| |+..+..+.+.++++++.|.++++++|+|...        +.+.||.+++|.+|+....|..
T Consensus       649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~  728 (818)
T PRK13830        649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR  728 (818)
T ss_pred             cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence            35799999999999999 79999999999999999899999999998642        2368999999999998776643

>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=97.76  E-value=0.0052  Score=59.42  Aligned_cols=194  Identities=15%  Similarity=0.187  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHHHhhhChH--HHHH---HHHHHHHHHHHHHHHhcCCCCChhhHhhhhHHHHHHHHHHH---HH--hh
Q 013741          223 WWKQLCILSHRSFLNMLRDMG--YYWL---RIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLI---CL--SV  292 (437)
Q Consensus       223 ~~~Q~~~L~~R~~~~~~Rd~~--~~~~---r~~~~~~~~li~G~~f~~~~~~~~~i~~r~~~l~f~~~~~~---~~--~~  292 (437)
                      .++..+.|.+|.++...|+..  ..|.   =+++.++++++.|.+.-.-+.+.        ..+...+...   +.  ..
T Consensus        16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~~~--------~~~l~~G~~~w~f~~~~i~   87 (263)
T COG1682          16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGLNF--------LAYLLAGLILWFFFSEAIS   87 (263)
T ss_pred             HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--------HHHHHHHHHHHHHHHHHHH
Confidence            356778899999999888763  2332   23455555555555553321111        1111111111   11  11


Q ss_pred             hhhhhHHHHHHHhhhccCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHH
Q 013741          293 GGLPSFIEEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETC  372 (437)
Q Consensus       293 ~~~~~~~~er~v~~rE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~  372 (437)
                      .+...+.+..+++.|-+    .++..+.+++++.++-...+..++....+-+.-+.. + .++......+.+....+.++
T Consensus        88 ~~~~s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s-~~~l~~~~~l~~l~l~~~g~  161 (263)
T COG1682          88 EGAGSVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-S-WHWLLLLPALLLLILFSVGL  161 (263)
T ss_pred             hHHHHhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-c-HHHHHHHHHHHHHHHHHHHH
Confidence            22334445555555431    278899999999988766666555444444444433 2 33444434444444455567


Q ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHh
Q 013741          373 MMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPI  432 (437)
Q Consensus       373 ~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l  432 (437)
                      +.++|.++.-..-=.-+-+.++-+++..+|.+=+.+.+|.. ++| +.++||+.+-.|++
T Consensus       162 ~l~~a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~-~~~-~~~~NP~~~iie~~  219 (263)
T COG1682         162 GLILASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQ-LRE-LVLLNPLTHIIESF  219 (263)
T ss_pred             HHHHHhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHH-HHH-HHHHCcHHHHHHHH
Confidence            77777776433332334455667777889999999999986 889 99999999998874

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=97.65  E-value=0.00014  Score=69.26  Aligned_cols=86  Identities=21%  Similarity=0.317  Sum_probs=62.4

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHH----------------HHHhCCCEEEEeCCCC--
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISI----------------EILTQPTVLLLDEPTS--   63 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~----------------~l~~~p~ll~lDEPts--   63 (437)
                      +.++..+|+..+...+++.+..+...       ..+|+.+++.++.                ....+|+++++| |++  
T Consensus        52 ~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~  123 (239)
T cd01125          52 PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSF  123 (239)
T ss_pred             CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHh
Confidence            45567788999988888665443322       2245555554433                235799999999 765  


Q ss_pred             ----CCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCc
Q 013741           64 ----GLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPS   95 (437)
Q Consensus        64 ----gLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~   95 (437)
                          .+|+.....+++.|+++++ .|.+|+++.|..-
T Consensus       124 ~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K  160 (239)
T cd01125         124 HGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK  160 (239)
T ss_pred             CCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence                4799999999999999987 5889999999863

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=97.61  E-value=0.00014  Score=68.44  Aligned_cols=58  Identities=17%  Similarity=0.228  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhc-CCEEEEEecCCc
Q 013741           38 GEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQV-LKCIALD-GRIVVCSIHQPS   95 (437)
Q Consensus        38 GerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~-l~~l~~~-g~tvi~t~hqp~   95 (437)
                      .|-+|++-....+++|+++++|||.+|+|+.....+... ++.+.+. +.++|+++|.+.
T Consensus        95 ~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e  154 (218)
T cd03286          95 VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS  154 (218)
T ss_pred             HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence            567888777788899999999999999999999999887 8888875 899999999964

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.59  E-value=0.00016  Score=68.63  Aligned_cols=75  Identities=15%  Similarity=0.149  Sum_probs=53.8

Q ss_pred             CCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCCEEEEEecCCch------HHHh
Q 013741           35 ISSGEKKRLSISIEIL----TQPTVLLLDEPTSGL----DSASAFFVIQVLKCIALDGRIVVCSIHQPSS------HLFY  100 (437)
Q Consensus        35 lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgL----D~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~------~i~~  100 (437)
                      +|++++++-.+...+-    .+|+++++||||+++    |+....++.+.++++++.|.|+++|.|+...      .+..
T Consensus        96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~  175 (230)
T PRK08533         96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRT  175 (230)
T ss_pred             ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEE
Confidence            5666655544333222    379999999999999    7788889999999998888888887765421      1245


Q ss_pred             hcCeEEEEe
Q 013741          101 LFDDLLLLS  109 (437)
Q Consensus       101 ~fd~v~~L~  109 (437)
                      ++|-++.|+
T Consensus       176 ~~DgvI~L~  184 (230)
T PRK08533        176 AATMLIRLE  184 (230)
T ss_pred             eeeEEEEEE
Confidence            567788776

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.49  E-value=0.00052  Score=65.08  Aligned_cols=76  Identities=18%  Similarity=0.209  Sum_probs=59.3

Q ss_pred             CCHHHHHHHHHHHHHHh--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhcCCEEEEEecCCch------HHHhhcC
Q 013741           35 ISSGEKKRLSISIEILT--QPTVLLLDEPTSG---LDSASAFFVIQVLKCIALDGRIVVCSIHQPSS------HLFYLFD  103 (437)
Q Consensus        35 lSgGerkRv~ia~~l~~--~p~ll~lDEPtsg---LD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~------~i~~~fd  103 (437)
                      .+.++++.+....+++.  +|+++++||||+.   .|.....++++.++.+++.|.|+++++|++..      .+..++|
T Consensus       101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~D  180 (234)
T PRK06067        101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICD  180 (234)
T ss_pred             CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheE
Confidence            46788999999999988  9999999999964   45555556666677777788999999998653      1566778


Q ss_pred             eEEEEeC
Q 013741          104 DLLLLSN  110 (437)
Q Consensus       104 ~v~~L~~  110 (437)
                      .++.|+.
T Consensus       181 gvI~L~~  187 (234)
T PRK06067        181 VYLKLRA  187 (234)
T ss_pred             EEEEEEe
Confidence            8887763

>PF12679 ABC2_membrane_2: ABC-2 family transporter protein

Probab=97.45  E-value=0.013  Score=56.35  Aligned_cols=95  Identities=13%  Similarity=0.150  Sum_probs=55.9

Q ss_pred             HHhhhccCCC--------CcchHHHHHHHHHHHhhHHHH---HHHhh-hh--hhhcccccccChHHHHHHHHHHHHHHH-
Q 013741          303 KASYRERISC--------HYGEAVFVLSNFLSSFPFLVI---LSISS-GT--ILHYMVQFHPGFSHYCHFCLSLFCCVS-  367 (437)
Q Consensus       303 ~v~~rE~~~g--------~Y~~~~y~la~~l~elP~~~~---~~~if-~~--i~Y~m~gl~~~~~~f~~f~l~~~~~~~-  367 (437)
                      ..+.+|+++|        =+++..++++|.++.+...++   ...+- .+  ......|.+.+...+....+....... 
T Consensus        88 ~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (277)
T PF12679_consen   88 DLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLA  167 (277)
T ss_pred             HHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence            3456666665        267899999999998877432   11111 11  111223445555555444333322222 


Q ss_pred             --HHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 013741          368 --IVETCMMVVALLVPNVLMGMGVGTALIVLM  397 (437)
Q Consensus       368 --~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~  397 (437)
                        +..+++.++++++.+...|...+..+....
T Consensus       168 ~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~  199 (277)
T PF12679_consen  168 VLVFISLGLLISSLFRSSASAILASLGLLFLL  199 (277)
T ss_pred             HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence              447899999999998888887766554444

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.44  E-value=5.6e-05  Score=72.49  Aligned_cols=77  Identities=17%  Similarity=0.185  Sum_probs=63.4

Q ss_pred             ccCCCCHHH--------HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhcCCEEEEEecCCchHHHhh
Q 013741           31 HLRGISSGE--------KKRLSISIEILTQPTVLLLDEPTSGLDSASAFF-VIQVLKCIALDGRIVVCSIHQPSSHLFYL  101 (437)
Q Consensus        31 ~~~~lSgGe--------rkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~-i~~~l~~l~~~g~tvi~t~hqp~~~i~~~  101 (437)
                      ..+.+|||+        |||+++|+.+..+++|..|  ||+.+|+.+... ++  +.++...+.|.|+.+|...  ....
T Consensus       126 ~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~  199 (249)
T cd01128         126 SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRI  199 (249)
T ss_pred             CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCC
Confidence            345689999        9999999999899999999  999999655543 54  5555556789999999964  4678


Q ss_pred             cCeEEEEeCCeE
Q 013741          102 FDDLLLLSNGET  113 (437)
Q Consensus       102 fd~v~~L~~G~~  113 (437)
                      +|.|.+|..|+.
T Consensus       200 ~paI~vl~s~sr  211 (249)
T cd01128         200 FPAIDILKSGTR  211 (249)
T ss_pred             CCeEEEcCCCCc
Confidence            999999999986

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=97.40  E-value=0.00041  Score=65.42  Aligned_cols=64  Identities=20%  Similarity=0.224  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhc-CCEEEEEecCCchHHHhhc
Q 013741           37 SGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFV-IQVLKCIALD-GRIVVCSIHQPSSHLFYLF  102 (437)
Q Consensus        37 gGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i-~~~l~~l~~~-g~tvi~t~hqp~~~i~~~f  102 (437)
                      ..|-+|++-...-+++|+++++|||.+|.|+.....+ ...++.+.+. +.++|+++|.+.  +.++.
T Consensus        95 ~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~--l~~~~  160 (222)
T cd03287          95 MVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS--LGEIL  160 (222)
T ss_pred             HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH--HHHHH
Confidence            3577888888888899999999999999998777765 5677888775 889999999964  44443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG3910 Predicted ATPase [General function prediction only]

Probab=97.37  E-value=0.00052  Score=62.16  Aligned_cols=68  Identities=24%  Similarity=0.399  Sum_probs=54.6

Q ss_pred             ccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 013741           27 IGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS   95 (437)
Q Consensus        27 vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~   95 (437)
                      +|+.....-|.||-=- .|-..-..+.-+++||||-++|.+.-+..+...|+++++.|.-+|+.+|.|-
T Consensus       122 ~~~~sLh~~SHGEsf~-~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi  189 (233)
T COG3910         122 YGGRSLHHMSHGESFL-AIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI  189 (233)
T ss_pred             cCCcchhhhccchHHH-HHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence            3333344568888543 3333445678899999999999999999999999999999999999999983

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=97.35  E-value=4.4e-05  Score=75.01  Aligned_cols=127  Identities=24%  Similarity=0.300  Sum_probs=0.0

Q ss_pred             HHHHHHhhhc--cCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccc---cccChHHHHHHHHHHHHHHHHHHHHH
Q 013741          299 IEEHKASYRE--RISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQ---FHPGFSHYCHFCLSLFCCVSIVETCM  373 (437)
Q Consensus       299 ~~er~v~~rE--~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~g---l~~~~~~f~~f~l~~~~~~~~~~~~~  373 (437)
                      ..||.-=.+|  +..| -++..|.+++.+..+...++..++..++   +.|   ++.+  +++..++.+++...+..+++
T Consensus       183 ~~ek~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~  256 (344)
T PF12698_consen  183 VEEKESGTRERLLSSG-VSPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFISFG  256 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhHhhhhhhHhhhccc-CCHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHHHH
Confidence            4555443333  3555 4888999999999999988888776664   334   4433  44444555666666777899


Q ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhh
Q 013741          374 MVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIM  433 (437)
Q Consensus       374 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~  433 (437)
                      .+++.++++...|..+++++..+.+.++|.+.+.+++|.+ ++| +.++.|..|..+++.
T Consensus       257 ~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-i~~~~P~~~~~~~~~  314 (344)
T PF12698_consen  257 FLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSF-LQW-ISSFLPFYWFIQGLR  314 (344)
T ss_dssp             ------------------------------------------------------------
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHH-HHH-HHHHhhHHHHHHHHH
Confidence            9999999999998877777777566666666778888875 788 888889999887763

>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional

Probab=97.31  E-value=0.042  Score=53.26  Aligned_cols=62  Identities=18%  Similarity=0.092  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHh
Q 013741          366 VSIVETCMMVVALLV---PNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPI  432 (437)
Q Consensus       366 ~~~~~~~~~~i~~~~---~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l  432 (437)
                      ...+.++|+++|++.   |+.+-   +.+.++.+++..+|.+-+.+.+|.. +++ +.+.||+.+..|+.
T Consensus       159 ~l~~~glglils~l~v~~rDi~~---i~~~~l~~lf~~SpI~y~~~~vp~~-~~~-il~~NPl~~~ie~~  223 (264)
T PRK15176        159 WLLGLSFGYFCDALSERFPLVYK---AVPVMLRPMFLISAVFYTANELPYS-LLS-IFSWNPLLHANEIV  223 (264)
T ss_pred             HHHHHHHHHHHHHHHHhCccHHH---HHHHHHHHHHHHhhHhhhHHhCcHH-HHH-HHHHCcHHHHHHHH
Confidence            334446666666654   54433   3355667777888988888999985 777 88999999998864

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.28  E-value=0.00077  Score=59.03  Aligned_cols=63  Identities=16%  Similarity=0.162  Sum_probs=47.8

Q ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Q 013741           35 ISSGEKKRLSISIEILTQPTVLLLDEPTS----------GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH   97 (437)
Q Consensus        35 lSgGerkRv~ia~~l~~~p~ll~lDEPts----------gLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~   97 (437)
                      -+.++.++...+.+...+|+++++||+++          +.|......+.+++....+.+.++|+++|.+...
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~  140 (165)
T cd01120          68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD  140 (165)
T ss_pred             CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence            45566677788888889999999999994          5555555666666656555789999999997654

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PF13175 AAA_15: AAA ATPase domain

Probab=97.19  E-value=0.00088  Score=68.51  Aligned_cols=65  Identities=28%  Similarity=0.369  Sum_probs=55.1

Q ss_pred             ccCCCCHHHHHHHHHHHHHH------hC-CC---EEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCc
Q 013741           31 HLRGISSGEKKRLSISIEIL------TQ-PT---VLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPS   95 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~l~------~~-p~---ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~   95 (437)
                      .....|.|+|+.+.++..+.      .+ +.   ++++|||-+.|.+..+..+++.|++++. .+..||+|||.|.
T Consensus       338 ~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~  413 (415)
T PF13175_consen  338 PLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPF  413 (415)
T ss_pred             ChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChh
Confidence            44678999999988876652      12 22   9999999999999999999999999998 6789999999983

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=97.04  E-value=0.0012  Score=74.19  Aligned_cols=52  Identities=25%  Similarity=0.241  Sum_probs=47.5

Q ss_pred             HHHHHHhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 013741           45 ISIEILTQPTVLLLDEPTSGL-DSASAFFVIQVLKCIALDGRIVVCSIHQPSS   96 (437)
Q Consensus        45 ia~~l~~~p~ll~lDEPtsgL-D~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~   96 (437)
                      |++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.++++++|+|..
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d  732 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD  732 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            567788999999999999999 7999999999999999989999999999864

>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []

Probab=96.99  E-value=0.05  Score=51.06  Aligned_cols=140  Identities=14%  Similarity=0.147  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHhhhh-HHHHHHHHHHHHHhhhhhhhHHHHHHHh
Q 013741          227 LCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRP-KCVAFIYGFLICLSVGGLPSFIEEHKAS  305 (437)
Q Consensus       227 ~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~~i~~r~-~~l~f~~~~~~~~~~~~~~~~~~er~v~  305 (437)
                      ++.++||.++.-+|++.....-+...+..-.+...   -++.+.+....-. |.+..+..+....+   +      ...|
T Consensus         1 ~~~l~~kdl~le~r~~~~~~~~~lf~l~~i~if~~---al~~~~~~l~~~~~gllWi~~lfa~~l~---~------~r~f   68 (215)
T PF03379_consen    1 FLALFRKDLRLEFRSKEGLLSMLLFFLLVIVIFSF---ALGPDPDLLARVAPGLLWIALLFASLLG---L------NRSF   68 (215)
T ss_pred             CHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHh---hcCCchhHHHHHhHHHHHHHHHHHHHHH---h------hHhH
Confidence            46789999999999987655554444443333333   3444433322222 33322222221111   1      2337


Q ss_pred             hhccCCCC--------cchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013741          306 YRERISCH--------YGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVA  377 (437)
Q Consensus       306 ~rE~~~g~--------Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~  377 (437)
                      .+|+++|.        .++.+.+++|.+...-...+..++..-+...+-|++.  .....+.+++.+........|.+.+
T Consensus        69 ~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~--~~~~~~~~~l~lgt~gl~~igtl~a  146 (215)
T PF03379_consen   69 AREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPI--SSWPLLLLSLLLGTLGLAAIGTLLA  146 (215)
T ss_pred             HHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            77777764        1456799999999876665555554444444556554  4455555555555555555666656


Q ss_pred             Hhc
Q 013741          378 LLV  380 (437)
Q Consensus       378 ~~~  380 (437)
                      +++
T Consensus       147 al~  149 (215)
T PF03379_consen  147 ALA  149 (215)
T ss_pred             HHH
Confidence            554

These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane

>COG4637 Predicted ATPase [General function prediction only]

Probab=96.73  E-value=0.0051  Score=59.98  Aligned_cols=67  Identities=28%  Similarity=0.470  Sum_probs=58.4

Q ss_pred             CCCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741           33 RGISSGEKKRLSISIEILT--QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF  102 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~~--~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~f  102 (437)
                      +.||-|+.|-++++.+|..  .|.+++||||-++|-+..-..+...+++-++.+ -|++++|.|+  +.+.+
T Consensus       269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~r--Ll~~~  337 (373)
T COG4637         269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPR--LLNAV  337 (373)
T ss_pred             hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHH--HHhhc
Confidence            5899999999999999986  678999999999999999999999999988765 7889999864  44444

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.73  E-value=0.0053  Score=64.58  Aligned_cols=75  Identities=23%  Similarity=0.408  Sum_probs=63.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 013741           33 RGISSGEKKRLSISIEILTQ----PTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL  108 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~~~----p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L  108 (437)
                      +--||||--|+.+|...+..    ...|++||--+|+--..+..|-+.|++|++. .-|+|+||+|.  +..+.|.=+..
T Consensus       430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~-~QVl~VTHlPQ--VAa~ad~H~~V  506 (557)
T COG0497         430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEH-HQVLCVTHLPQ--VAAMADTHFLV  506 (557)
T ss_pred             hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhcC-ceEEEEecHHH--HHhhhcceEEE
Confidence            56799999999998776542    3489999999999999999999999999874 67999999984  77788876666


Q ss_pred             eC
Q 013741          109 SN  110 (437)
Q Consensus       109 ~~  110 (437)
                      ++
T Consensus       507 ~K  508 (557)
T COG0497         507 EK  508 (557)
T ss_pred             EE
Confidence            54

>PF13166 AAA_13: AAA domain

Probab=96.43  E-value=0.021  Score=63.09  Aligned_cols=87  Identities=24%  Similarity=0.362  Sum_probs=65.8

Q ss_pred             HHHHHHHHHcCCcccccccc------------cCcccCCCCHHHHHHHHHHHHH--Hh-------CCCEEEEeCCCCCCC
Q 013741            8 DIVEETIIKMGLQACAETKI------------GNWHLRGISSGEKKRLSISIEI--LT-------QPTVLLLDEPTSGLD   66 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~v------------g~~~~~~lSgGerkRv~ia~~l--~~-------~p~ll~lDEPtsgLD   66 (437)
                      +++.+.|+.+|..+..=...            |....+.||-|||+-++++-=|  +.       +..++++|.|-|.||
T Consensus       462 ~~iN~~L~~~g~~~~~l~~~~~~~~y~l~~~~~~~~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD  541 (712)
T PF13166_consen  462 DRINEELKRLGFSNFSLEIVDDDKGYKLQRKGGSKPAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLD  541 (712)
T ss_pred             HHHHHHHHHhCCCCeEEEEecCCCeEEEEECCCCcccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCC
Confidence            46677788887554221111            1123468999999999997533  22       568999999999999


Q ss_pred             HHHHHHHHHHHHHHH--hcCCEEEEEecCC
Q 013741           67 SASAFFVIQVLKCIA--LDGRIVVCSIHQP   94 (437)
Q Consensus        67 ~~~~~~i~~~l~~l~--~~g~tvi~t~hqp   94 (437)
                      ......+.+.|+++.  ...+-||+.||..
T Consensus       542 ~~~~~~v~~~l~~~~~~~~~~QviIlTHn~  571 (712)
T PF13166_consen  542 HNRRFGVASRLKEEIKNSKFRQVIILTHNL  571 (712)
T ss_pred             HHHHHHHHHHHHHHhhcCCcceEEEEeCcH
Confidence            999999999999997  5567899999984

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.27  E-value=0.006  Score=71.05  Aligned_cols=73  Identities=21%  Similarity=0.253  Sum_probs=60.8

Q ss_pred             CCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 013741           33 RGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL  108 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L  108 (437)
                      ..||||||--++||.-++    ...++.+|||--++||..+...+.++|++.+ ++.-.|++||++.  .+..+|+++-.
T Consensus      1065 ~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr~~--~m~~ad~l~GV 1141 (1163)
T COG1196        1065 SLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHRKG--TMEAADRLVGV 1141 (1163)
T ss_pred             hhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcChH--HHHHHHHHeee
Confidence            469999999999987664    3457999999999999999999999999998 5567888889864  67778876644

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.25  E-value=0.00066  Score=71.53  Aligned_cols=67  Identities=16%  Similarity=0.216  Sum_probs=51.5

Q ss_pred             CCCCHHHHHHHHHH--HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH-------H-Hhhc
Q 013741           33 RGISSGEKKRLSIS--IEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH-------L-FYLF  102 (437)
Q Consensus        33 ~~lSgGerkRv~ia--~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~-------i-~~~f  102 (437)
                      +.+|+|++|||.|+  .++..+|+..          ...+..+.+.++.+++.|.|+++++|++...       + ..++
T Consensus       114 ~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~la  183 (484)
T TIGR02655       114 YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVS  183 (484)
T ss_pred             HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEee
Confidence            45788888888888  5555555433          4677888999999988999999999986421       2 5678


Q ss_pred             CeEEEEe
Q 013741          103 DDLLLLS  109 (437)
Q Consensus       103 d~v~~L~  109 (437)
                      |.|+.|+
T Consensus       184 DgVI~L~  190 (484)
T TIGR02655       184 DNVVILR  190 (484)
T ss_pred             eeEEEEE
Confidence            9999997

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=96.24  E-value=0.0095  Score=66.86  Aligned_cols=62  Identities=23%  Similarity=0.209  Sum_probs=49.6

Q ss_pred             HHhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCEEEEEecCCch--------HHHhhcCeEEEEeC
Q 013741           49 ILTQPTVLLLDEPTSGLD-SASAFFVIQVLKCIALDGRIVVCSIHQPSS--------HLFYLFDDLLLLSN  110 (437)
Q Consensus        49 l~~~p~ll~lDEPtsgLD-~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~--------~i~~~fd~v~~L~~  110 (437)
                      +-.+|+++++|||+.+|| +..+..+.+.++.+++.|.++++++|.|..        .+.+.++-.++|.+
T Consensus       632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~  702 (811)
T PRK13873        632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPN  702 (811)
T ss_pred             hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCC
Confidence            346899999999999999 788999999999999889999999999752        24445555555544

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.22  E-value=0.0037  Score=68.28  Aligned_cols=72  Identities=19%  Similarity=0.329  Sum_probs=62.1

Q ss_pred             CCCCHHHHHHHHHHHHHHh---CC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEE
Q 013741           33 RGISSGEKKRLSISIEILT---QP-TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLL  107 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~~---~p-~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~  107 (437)
                      ..||||||--|++|.-++.   +| +.+++||.-+.||+..+..|..+|++|+.. .-.|||+-.|  ++...+|+.+=
T Consensus      1096 ~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~-aQFI~TTFRp--Ell~vAdKfyg 1171 (1200)
T KOG0964|consen 1096 EQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDS-AQFITTTFRP--ELLSVADKFYG 1171 (1200)
T ss_pred             HHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhc-cceEeecccH--HHHHHHHhhhc
Confidence            4799999999999877754   45 689999999999999999999999999987 6788999887  67888887653

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.09  E-value=0.0062  Score=60.38  Aligned_cols=72  Identities=13%  Similarity=0.114  Sum_probs=56.3

Q ss_pred             HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           43 LSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        43 v~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      -.+..+|-.+|+++++|||.+       .+..+.++.+...+.+++.|+|.++  ..+..||+..|..|+....|.+.+.
T Consensus       209 ~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~  279 (308)
T TIGR02788       209 DLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAY  279 (308)
T ss_pred             HHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHH
Confidence            356667889999999999996       3456667776644456799999976  5666899999999998888877765


Q ss_pred             H
Q 013741          123 V  123 (437)
Q Consensus       123 ~  123 (437)
                      .
T Consensus       280 ~  280 (308)
T TIGR02788       280 I  280 (308)
T ss_pred             H
Confidence            4

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=95.81  E-value=0.027  Score=58.44  Aligned_cols=85  Identities=14%  Similarity=0.133  Sum_probs=66.9

Q ss_pred             CCCHHHHHHHH-----HHHHHH-hCCC-EEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHHh--cCC
Q 013741           34 GISSGEKKRLS-----ISIEIL-TQPT-VLLLD-----------------EP--TSGLDSASAFFVIQVLKCIAL--DGR   85 (437)
Q Consensus        34 ~lSgGerkRv~-----ia~~l~-~~p~-ll~lD-----------------EP--tsgLD~~~~~~i~~~l~~l~~--~g~   85 (437)
                      .=|.++|-|..     +|.=+. ..-+ ++++|                 ||  |+|+|+.....+.+.++++..  +|.
T Consensus       223 ~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~Gs  302 (438)
T PRK07721        223 DQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGS  302 (438)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCC
Confidence            45788888743     444442 2334 46788                 75  789999999999999999984  675


Q ss_pred             -----EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhH
Q 013741           86 -----IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM  121 (437)
Q Consensus        86 -----tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~  121 (437)
                           ||++..|+.+.   ..+|++..+.+|+++..++..+
T Consensus       303 IT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~  340 (438)
T PRK07721        303 ITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN  340 (438)
T ss_pred             eeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence                 99999999763   7799999999999999998763

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=95.71  E-value=0.023  Score=62.19  Aligned_cols=58  Identities=21%  Similarity=0.234  Sum_probs=41.2

Q ss_pred             cCCCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecC
Q 013741           32 LRGISSGEKKRLSISIEILT------QPTVLLLDEPTSGLDSASAFFVIQ-VLKCIALDGRIVVCSIHQ   93 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l~~------~p~ll~lDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~t~hq   93 (437)
                      +..||||||+-+++|..++.      +.++ ++|||++.||+.-+..+++ .+.++   ..-||+.+|+
T Consensus       549 ~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~---~~QvIils~d  613 (650)
T TIGR03185       549 KERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA---SHQVLLLSTD  613 (650)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc---CCeEEEEech
Confidence            45799999999766554432      2344 5699999999999999885 66553   3455555566

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR01190 ccmB heme exporter protein CcmB

Probab=95.53  E-value=0.86  Score=42.57  Aligned_cols=135  Identities=13%  Similarity=0.086  Sum_probs=73.3

Q ss_pred             HHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHh-cCCCCChhhHhhhhHHHHHHHH-HHHHHhhhhhhhHHHHHHHhhhc
Q 013741          231 SHRSFLNMLRDMGYYWLRIVFYVLVSITVGILY-LNVGLSNPAIYGRPKCVAFIYG-FLICLSVGGLPSFIEEHKASYRE  308 (437)
Q Consensus       231 ~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f-~~~~~~~~~i~~r~~~l~f~~~-~~~~~~~~~~~~~~~er~v~~rE  308 (437)
                      .+|.++.-+|++.....-+    ++.+++-++| +..+.+.+-.+.-...++.+.. +....+         -...|.+|
T Consensus         2 ~~kDl~l~~r~~~~~~~~l----lF~l~vi~lf~la~gp~~~~l~~~apgilWva~lfa~ll~---------l~rlF~~d   68 (211)
T TIGR01190         2 IRRDLRLAFRAGGGILNPL----WFFLIVVTLFPFGVGPELKLLSRIAPGIVWVGALLSSLLS---------LDRLFRDD   68 (211)
T ss_pred             cHHHHHHHHcccchHHHHH----HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHH---------hhHHHHHH
Confidence            5888999999877544333    3444444444 4455554434333333333322 222211         13457777


Q ss_pred             cCCCC--------cchHHHHHHHHHHHhhHHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013741          309 RISCH--------YGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLV  380 (437)
Q Consensus       309 ~~~g~--------Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~i~~~~  380 (437)
                      +++|.        .++...+++|.++..-...+.-++..-+.-.+-|++.  .....+.+.+.+.......+|-+.++++
T Consensus        69 ~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~--~~~~~l~l~LllGt~~Ls~igtl~aALt  146 (211)
T TIGR01190        69 FEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDV--PAWGALALTLLLGTPALSFLGAIGAALT  146 (211)
T ss_pred             HhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77773        3667888999998754444433333333333555554  3345566666665555556666666654

This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.

>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]

Probab=95.48  E-value=1.9  Score=41.54  Aligned_cols=170  Identities=17%  Similarity=0.182  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhc-CCCCC--hhhHhhhh-HHHHHHHHHHHHHhhhhhhhHHHH
Q 013741          226 QLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYL-NVGLS--NPAIYGRP-KCVAFIYGFLICLSVGGLPSFIEE  301 (437)
Q Consensus       226 Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~-~~~~~--~~~i~~r~-~~l~f~~~~~~~~~~~~~~~~~~e  301 (437)
                      ++..+.++.++...|+|..+..-....++.++.....+. .....  ..+..... ....+...+..+..   +-....-
T Consensus         3 ~~~~i~~~e~~~~~~s~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~   79 (278)
T COG1277           3 NILVIAQKEFQKYLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLLFLSSVSLVFSFFLP---LLAILLG   79 (278)
T ss_pred             hhhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcchhhhhhhhHHHHHHHHHH---HHHHHHc
Confidence            577889999999999998877766555555555555552 11110  00000000 11000111111111   0011112


Q ss_pred             HHHhhhccCCCC--------cchHHHHHHHHHHHhhHHHHHHHhhh---hhhhcccccccCh---HHHHHHHHHHHHHHH
Q 013741          302 HKASYRERISCH--------YGEAVFVLSNFLSSFPFLVILSISSG---TILHYMVQFHPGF---SHYCHFCLSLFCCVS  367 (437)
Q Consensus       302 r~v~~rE~~~g~--------Y~~~~y~la~~l~elP~~~~~~~if~---~i~Y~m~gl~~~~---~~f~~f~l~~~~~~~  367 (437)
                      -.++.+|+.+|.        .++.--.++|.+.-+-..++..++..   ...+...|...+.   ..+..+....++...
T Consensus        80 ~~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  159 (278)
T COG1277          80 ADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGL  159 (278)
T ss_pred             cchhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHH
Confidence            345567777664        45667778998887665555444444   2234444444432   344455555555556


Q ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 013741          368 IVETCMMVVALLVPNVLMGMGVGTALIVLMM  398 (437)
Q Consensus       368 ~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~  398 (437)
                      +..+++.+++....+...+..++..+...+.
T Consensus       160 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  190 (278)
T COG1277         160 VLLSISLLISSLFSSSSLALLVSIILLLLFI  190 (278)
T ss_pred             HHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Confidence            6667888899998887777766655444443

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=95.20  E-value=0.03  Score=63.77  Aligned_cols=59  Identities=29%  Similarity=0.334  Sum_probs=49.0

Q ss_pred             CCHHHH------HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----cCCEEEEEecC
Q 013741           35 ISSGEK------KRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-----DGRIVVCSIHQ   93 (437)
Q Consensus        35 lSgGer------kRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tvi~t~hq   93 (437)
                      .|-|||      =|+++|..+..+..+|=|||||++||......+...|.++-+     .+.-.|+++|+
T Consensus      1184 cSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHD 1253 (1294)
T KOG0962|consen 1184 CSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHD 1253 (1294)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehH
Confidence            599998      578889999999999999999999999998888877766543     24467777887

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=95.02  E-value=0.063  Score=60.25  Aligned_cols=49  Identities=18%  Similarity=0.205  Sum_probs=44.0

Q ss_pred             HHHhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 013741           48 EILTQPTVLLLDEPTSGLD-SASAFFVIQVLKCIALDGRIVVCSIHQPSS   96 (437)
Q Consensus        48 ~l~~~p~ll~lDEPtsgLD-~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~   96 (437)
                      .+..+|.++++|||..+|| +..+..+.+.++.+++.|..+++++|.|..
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d  687 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED  687 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            3567999999999999999 888999999999999889999999999853

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=94.98  E-value=0.03  Score=57.80  Aligned_cols=82  Identities=13%  Similarity=0.041  Sum_probs=61.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHH-------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcC
Q 013741           31 HLRGISSGEKKRLSISIEIL-------TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFD  103 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~l~-------~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd  103 (437)
                      ...+-|.|+|+|+..+...+       .++-++++|+||++.|+.  .++-..+.+....|.+..+.+|.+  .+   ++
T Consensus       218 ~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L---~E  290 (432)
T PRK06793        218 ATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KL---LE  290 (432)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hH---HH
Confidence            34578999999999988877       789999999999999996  555556666655688888888853  34   44


Q ss_pred             eEEEEeCCeEEEeeCh
Q 013741          104 DLLLLSNGETIYFGDA  119 (437)
Q Consensus       104 ~v~~L~~G~~v~~G~~  119 (437)
                      |.-...+|.+...+..
T Consensus       291 Rag~~~~GSiT~~~tv  306 (432)
T PRK06793        291 RSGKTQKGSITGIYTV  306 (432)
T ss_pred             HhccCCCcceEEEEEE
Confidence            4444578887776654

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=94.97  E-value=0.088  Score=59.37  Aligned_cols=76  Identities=25%  Similarity=0.202  Sum_probs=52.5

Q ss_pred             ccccC--cccCCCCHHHHHHHHHHHHH--HhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCch
Q 013741           25 TKIGN--WHLRGISSGEKKRLSISIEI--LTQPTVLLLDEP---TSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQPSS   96 (437)
Q Consensus        25 ~~vg~--~~~~~lSgGerkRv~ia~~l--~~~p~ll~lDEP---tsgLD~~~~~~i~~~l~~l~~~-g~tvi~t~hqp~~   96 (437)
                      |.+|.  ...+|.|-=+.-...++..|  +++++++++|||   |+.+|..+  .....++.+.+. |.++++++|.  .
T Consensus       655 triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~--~  730 (854)
T PRK05399        655 TRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHY--H  730 (854)
T ss_pred             eccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEech--H
Confidence            44553  23456776555555555554  559999999999   88888433  455567777765 5889999999  4


Q ss_pred             HHHhhcCe
Q 013741           97 HLFYLFDD  104 (437)
Q Consensus        97 ~i~~~fd~  104 (437)
                      ++.+++|+
T Consensus       731 el~~l~~~  738 (854)
T PRK05399        731 ELTELEEK  738 (854)
T ss_pred             HHHHHhhh
Confidence            67777765

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=94.96  E-value=0.052  Score=56.56  Aligned_cols=100  Identities=13%  Similarity=0.138  Sum_probs=66.5

Q ss_pred             hCCCEEEEeCCCCCCCHH-HHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEE-EEeCCeEEEeeChhH------H
Q 013741           51 TQPTVLLLDEPTSGLDSA-SAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLL-LLSNGETIYFGDAKM------A  122 (437)
Q Consensus        51 ~~p~ll~lDEPtsgLD~~-~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~-~L~~G~~v~~G~~~~------~  122 (437)
                      .+|++|++|||...+|.. ....+...+..+.+.|+.+|++++++..++-.+.|++. -+..|-++...+++.      +
T Consensus       193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL  272 (440)
T PRK14088        193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA  272 (440)
T ss_pred             hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence            379999999999988765 45678888988888888888877544456666666654 356788888888753      1


Q ss_pred             HHHHHHcCCCCCCCCCchHHHHHhhccCcc
Q 013741          123 VKFFAEAGFPCPSRRNPSDHFLRCINSDFD  152 (437)
Q Consensus       123 ~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~  152 (437)
                      ....+..+...|+  +..+|+.+.+..+.+
T Consensus       273 ~~~~~~~~~~l~~--ev~~~Ia~~~~~~~R  300 (440)
T PRK14088        273 RKMLEIEHGELPE--EVLNFVAENVDDNLR  300 (440)
T ss_pred             HHHHHhcCCCCCH--HHHHHHHhccccCHH
Confidence            2233334555443  345666655544433

>cd01131 PilT Pilus retraction ATPase PilT

Probab=94.90  E-value=0.042  Score=50.77  Aligned_cols=57  Identities=19%  Similarity=0.283  Sum_probs=42.8

Q ss_pred             HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741           44 SISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS  109 (437)
Q Consensus        44 ~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~  109 (437)
                      .+..+|..+|+++++|||.   |..+..    ...+.+..|..++.|+|.++  ..+..||++.+.
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~~----~~l~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~  122 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETIR----LALTAAETGHLVMSTLHTNS--AAKTIDRIIDVF  122 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHHH----HHHHHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence            5678888999999999996   555433    33345667899999999975  346789987664

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR00152 dephospho-CoA kinase

Probab=94.64  E-value=0.02  Score=52.30  Aligned_cols=73  Identities=15%  Similarity=0.150  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch-HHHhhcCeEEEEeCC
Q 013741           37 SGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS-HLFYLFDDLLLLSNG  111 (437)
Q Consensus        37 gGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~-~i~~~fd~v~~L~~G  111 (437)
                      -|+-.|..+|..+..+|+.+..+|  +.+||....++.+.+++...+|.+|++.+|.... .+...||.++++..+
T Consensus        60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~  133 (188)
T TIGR00152        60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS  133 (188)
T ss_pred             CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence            478899999999999999888776  8999999999999998887667899999988632 366789999887643

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.62  E-value=0.033  Score=62.29  Aligned_cols=75  Identities=21%  Similarity=0.367  Sum_probs=63.0

Q ss_pred             cCCCCHHHHHHHHHHHHHHh---CC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEE
Q 013741           32 LRGISSGEKKRLSISIEILT---QP-TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLL  107 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l~~---~p-~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~  107 (437)
                      +..||||||-.-|+|..++.   +| +++++||.-+.||-.+.-.|.+.+++-.+.-+=||++.   +..+|++.||++=
T Consensus      1193 I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIISL---RnnMFELa~rLvG 1269 (1293)
T KOG0996|consen 1193 ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISL---RNNMFELANRLVG 1269 (1293)
T ss_pred             cccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccCCeEEEEEe---hhhHHHHHhhhee
Confidence            35799999999999888765   45 79999999999999999999999998766555566664   4679999999988


Q ss_pred             Ee
Q 013741          108 LS  109 (437)
Q Consensus       108 L~  109 (437)
                      ++
T Consensus      1270 IY 1271 (1293)
T KOG0996|consen 1270 IY 1271 (1293)
T ss_pred             eE
Confidence            76

>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised

Probab=93.92  E-value=1.4  Score=44.94  Aligned_cols=112  Identities=13%  Similarity=0.154  Sum_probs=70.7

Q ss_pred             chHHHHHHHHHHHhhHHHHHHHhhhhhhhccccccc--Ch--HHHHHHHHHHHHHHHHHHHHH-HHHHHhccchHHHHHH
Q 013741          315 GEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHP--GF--SHYCHFCLSLFCCVSIVETCM-MVVALLVPNVLMGMGV  389 (437)
Q Consensus       315 ~~~~y~la~~l~elP~~~~~~~if~~i~Y~m~gl~~--~~--~~f~~f~l~~~~~~~~~~~~~-~~i~~~~~~~~~a~~~  389 (437)
                      ++..+.+-|.++.....++.+++|+.+. +.-+.+-  ..  +.|+.+|+..++...+..... .+++.+ +..-++.. 
T Consensus       240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i-~~~~~~~~-  316 (382)
T PF12051_consen  240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISII-GPPFMPFW-  316 (382)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHH-
Confidence            7778899999999999999999988887 5554443  33  448888877766543321111 122222 22222211 


Q ss_pred             HHHHHHHHHHhhccccCCCCcccccccccccccChhHHHHHHhhh
Q 013741          390 GTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEPIME  434 (437)
Q Consensus       390 ~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yisp~~y~~e~l~~  434 (437)
                       -++.++..+-+++ .|.+-.|.+ .|| .|=+ |++.++|++-+
T Consensus       317 -ll~wvi~nv~~~~-~P~el~p~f-yr~-gya~-P~~n~~~~~r~  356 (382)
T PF12051_consen  317 -LLFWVILNVSSTF-YPLELSPGF-YRY-GYAM-PMHNIYEGLRV  356 (382)
T ss_pred             -HHHHHHHhccccc-CChhhCccH-HHH-hhhh-hHHHHHHHHHH
Confidence             1222233344665 478888985 899 8888 99999999764

It is found in bacterial and eukaryotic proteins.

>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.82  E-value=4.1  Score=38.75  Aligned_cols=191  Identities=14%  Similarity=0.128  Sum_probs=88.7

Q ss_pred             CHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhcCCCCChh---hHhhhhHHHHHHHHHHHHHhhhhhhhH
Q 013741          222 SWWKQLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNP---AIYGRPKCVAFIYGFLICLSVGGLPSF  298 (437)
Q Consensus       222 ~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~~f~~~~~~~~---~i~~r~~~l~f~~~~~~~~~~~~~~~~  298 (437)
                      ++|+....+.+-.++.+.--+.-...-.+...+-+++.+.++-.+-++.+   +..-.--..+++..+..-.....-..+
T Consensus         3 ~f~rky~~l~~v~~~~~~eYR~~~il~~l~~~l~~~l~~~lW~a~adss~~i~glt~~d~~~Y~~~~fvv~~lt~~~~~~   82 (268)
T COG4587           3 KFWRKYRVLLSVGLASMLEYRVNFILWRLSGLLPLILMGYLWVAVADSSPQINGLTPGDVARYFFATFVVRQLTTVWSIW   82 (268)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCccccCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666555544332332233333444444555555544433222   211111123333333322111111222


Q ss_pred             HHHHHHhhhccCCCCcchHHHHHHHHHHHhh--------HHHHHHHhhhhhhhcccccccChHHHHHHHHHHHHHHHHHH
Q 013741          299 IEEHKASYRERISCHYGEAVFVLSNFLSSFP--------FLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVE  370 (437)
Q Consensus       299 ~~er~v~~rE~~~g~Y~~~~y~la~~l~elP--------~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~  370 (437)
                      --|+.|-.-|-+-.+-+|..|.....-.+.+        +.++..++|... |--+-.-.+....+.+.+.+.+....--
T Consensus        83 ef~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l-~~~~~~~l~~~~l~~~~l~la~~~~~~F  161 (268)
T COG4587          83 EFEKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFALL-YGAILQFLSPWTLYLFVLALALLFLLRF  161 (268)
T ss_pred             HHHHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hhHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence            2356665555555566666666555555544        444434333221 2111122334444444443333322212


Q ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHhhccccCCCCcccc
Q 013741          371 TCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKF  413 (437)
Q Consensus       371 ~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~  413 (437)
                      .+-..+++.+--..-|+.+....-.+..+.||.+.|..-.|++
T Consensus       162 ~i~f~~~~~aFwt~~as~l~~~~~~l~~f~sG~l~PL~~fP~~  204 (268)
T COG4587         162 LIQFTFGLFAFWTERASSLGKFWWLLYAFLSGSLAPLAFFPDW  204 (268)
T ss_pred             HHHHHHHHHHhhccchhhHHHHHHHHHHHhccccchHHhChHH
Confidence            2223344443333446666777667777899999999999984

>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family

Probab=93.67  E-value=6.7  Score=37.38  Aligned_cols=83  Identities=13%  Similarity=0.081  Sum_probs=45.9

Q ss_pred             HHHHHhhhccCCCCcchHHHHHHHHHHHhhHHHHHHHhhhhhhhc----ccc-cccChHHHHHHHHHHHHHHHHHHHHHH
Q 013741          300 EEHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHY----MVQ-FHPGFSHYCHFCLSLFCCVSIVETCMM  374 (437)
Q Consensus       300 ~er~v~~rE~~~g~Y~~~~y~la~~l~elP~~~~~~~if~~i~Y~----m~g-l~~~~~~f~~f~l~~~~~~~~~~~~~~  374 (437)
                      +++.--+|.-.+.-.++..+++||.++-+-+.++..++..++...    ..+ -+-+...++...+.+++.......+..
T Consensus        71 E~~~~~~k~ll~~p~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~~l~l  150 (248)
T TIGR03733        71 EESAGNFKNLLSTTKSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYIIHL  150 (248)
T ss_pred             HHHhChHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555555566788999999998766666544432222221    111 122334454444445555555556777


Q ss_pred             HHHHhccc
Q 013741          375 VVALLVPN  382 (437)
Q Consensus       375 ~i~~~~~~  382 (437)
                      +++....+
T Consensus       151 ~ls~~~g~  158 (248)
T TIGR03733       151 FVSFAFGM  158 (248)
T ss_pred             HHHHHhCC
Confidence            77776664

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.

>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.56  E-value=0.2  Score=52.30  Aligned_cols=69  Identities=23%  Similarity=0.278  Sum_probs=56.9

Q ss_pred             CCCHHHHHHHHHHHHHH---hCC-----CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcC
Q 013741           34 GISSGEKKRLSISIEIL---TQP-----TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFD  103 (437)
Q Consensus        34 ~lSgGerkRv~ia~~l~---~~p-----~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd  103 (437)
                      .||-|||+-++++--|+   .+|     +++++|.|.+.+|+.-....+..++..+.+++-||+-+|. ...+-+++|
T Consensus       529 ~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHn-tYF~rd~~~  605 (758)
T COG4694         529 TLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHN-TYFYRDITL  605 (758)
T ss_pred             cccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEecc-ceehHHHHh
Confidence            59999999988765543   355     4689999999999999999999999999999999999998 444444443

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=93.13  E-value=0.11  Score=51.97  Aligned_cols=68  Identities=13%  Similarity=0.231  Sum_probs=47.5

Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHh-hcCeEEEEeCCeEEEeeC--hhHHHHHHHHcCC
Q 013741           56 LLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFY-LFDDLLLLSNGETIYFGD--AKMAVKFFAEAGF  131 (437)
Q Consensus        56 l~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~-~fd~v~~L~~G~~v~~G~--~~~~~~~f~~~g~  131 (437)
                      +++|||+.+||...+..+.+.|++.. ++.++|+++|+|.. +.. +-.|.      +++.+.+  .+++.++.++.|.
T Consensus       116 V~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~~-ll~ti~SRc------~~~~~~~~~~~~~~~~L~~~~~  186 (325)
T PRK08699        116 VILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAADK-VLPTIKSRC------RKMVLPAPSHEEALAYLRERGV  186 (325)
T ss_pred             EEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCChHh-ChHHHHHHh------hhhcCCCCCHHHHHHHHHhcCC
Confidence            56789999999999999999999975 56889999999863 332 22222      2333333  3455667766543

>PRK04296 thymidine kinase; Provisional

Probab=92.84  E-value=0.28  Score=44.92  Aligned_cols=56  Identities=27%  Similarity=0.249  Sum_probs=44.8

Q ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC---------CchHHHhhcCeEEEEeC
Q 013741           51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ---------PSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        51 ~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq---------p~~~i~~~fd~v~~L~~  110 (437)
                      .+++++++||- -=||   ..++.+.++.+++.|.+||++-+.         ++..+..++|.|..|..
T Consensus        77 ~~~dvviIDEa-q~l~---~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~  141 (190)
T PRK04296         77 EKIDCVLIDEA-QFLD---KEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKA  141 (190)
T ss_pred             CCCCEEEEEcc-ccCC---HHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeE
Confidence            37899999999 1133   344677778778899999999999         77889999999998853

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=92.55  E-value=0.31  Score=43.48  Aligned_cols=69  Identities=14%  Similarity=0.129  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHh--CCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741           41 KRLSISIEILT--QPTVLLLDEPTSG--LDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        41 kRv~ia~~l~~--~p~ll~lDEPtsg--LD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~  110 (437)
                      +-+..|.+.+.  +.++++|||-..-  ++-.....+.+.|++ +.++..+|+|.+.++.++.+++|-|--|..
T Consensus        82 ~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~-rp~~~evIlTGr~~p~~l~e~AD~VTEm~~  154 (159)
T cd00561          82 EGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA-KPEDLELVLTGRNAPKELIEAADLVTEMRE  154 (159)
T ss_pred             HHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc-CCCCCEEEEECCCCCHHHHHhCceeeecce
Confidence            34556666664  5699999998765  455667788888876 346789999999999999999999987754

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.14  E-value=0.11  Score=57.50  Aligned_cols=71  Identities=20%  Similarity=0.329  Sum_probs=52.4

Q ss_pred             cCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE
Q 013741           32 LRGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDL  105 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v  105 (437)
                      ...||||||-.|++..-|+    ..+++++|||.-+.||-.-...|-++||.--....=||++.-+   -+|.-+|++
T Consensus      1080 L~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~sQFIVVSLKe---GMF~NANvL 1154 (1174)
T KOG0933|consen 1080 LSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVSLKE---GMFNNANVL 1154 (1174)
T ss_pred             HHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhCCCCeEEEEEchh---hccccchhh
Confidence            3579999999988765543    3557999999999999999999999999743344556666554   345555543

>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]

Probab=92.07  E-value=0.34  Score=48.83  Aligned_cols=76  Identities=20%  Similarity=0.308  Sum_probs=55.3

Q ss_pred             CCCCHHHHHHHHHHHHH---------HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcC
Q 013741           33 RGISSGEKKRLSISIEI---------LTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFD  103 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l---------~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd  103 (437)
                      .-.|-||+|-+.++.-|         ..++.||+|||-+|-||..-+..+++. ..  ...++.|.+++.+  .+-+..+
T Consensus       274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~--~~~Q~fvT~t~~~--~~~~~~~  348 (363)
T COG1195         274 DFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IE--LGVQVFVTTTDLE--DIDDNLD  348 (363)
T ss_pred             hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cc--cCCeEEEEccCHH--Hhhhhhh
Confidence            34799999999887655         457899999999999999999999887 32  2345666666553  3443444


Q ss_pred             ---eEEEEeCCeE
Q 013741          104 ---DLLLLSNGET  113 (437)
Q Consensus       104 ---~v~~L~~G~~  113 (437)
                         ++....+|++
T Consensus       349 ~~~~~f~V~~g~i  361 (363)
T COG1195         349 ENAQMFHVEDGKI  361 (363)
T ss_pred             ccceEEEEeccee
Confidence               6666677765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	437
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		2e-06
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		3e-06
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		8e-06
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		2e-05
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		2e-05
2ihy_A	279	Structure Of The Staphylococcus Aureus Putative Atp		2e-05
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		2e-05
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		2e-05
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		3e-05
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		5e-05
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		7e-05
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		7e-05
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		8e-05
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		8e-05
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		9e-05
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		2e-04
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		5e-04
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		5e-04
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		7e-04
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		7e-04
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		7e-04
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		7e-04
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		8e-04
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		9e-04
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		9e-04

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           +S G+K+R++I+  +L  P +LLLDE TS LD+ + + V + L  + +DGR V+   H+ 
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVLVIAHRL 542
Query: 95  SS 96
           S+
Sbjct: 543 ST 544

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           +S G+K+R++I+  +L  P +LLLDE TS LD+ + + V + L  + +DGR V+   H  
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVLVIAHHL 573
Query: 95  SS 96
           S+
Sbjct: 574 ST 575

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
           +S G+++R+SI+  +  +P VLL DEPTS LD      V+++++ +A +G+ +V   H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 21  ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80
           A  E +  N     +S G+++R++I+  +   P ++L DEPT  LDS +   + Q+LK +
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKL 191
Query: 81  -ALDGRIVVCSIH 92
              DG+ VV   H
Sbjct: 192 NEEDGKTVVVVTH 204

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 21  ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80
           A  E +  N     +S G+++R++I+  +   P ++L D+PT  LDS +   ++Q+LK +
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191
Query: 81  -ALDGRIVVCSIH 92
              DG+ VV   H
Sbjct: 192 NEEDGKTVVVVTH 204

>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 3   NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPT 62
           +DEI +   + +  +G  A A+  IG      +S+GEK+R+ I+  +  QP VL+LDEP 
Sbjct: 135 DDEIRNEAHQLLKLVGXSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPA 189
Query: 63  SGLD 66
           +GLD
Sbjct: 190 AGLD 193

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 25   TKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84
            T++G+   + +S G+K+R++I+  ++ QP +LLLDE TS LD+ S   V + L   A +G
Sbjct: 1163 TRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREG 1220
Query: 85   RIVVCSIHQPSS 96
            R  +   H+ S+
Sbjct: 1221 RTCIVIAHRLST 1232

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 25   TKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84
            T++G+   + +S G+K+R++I+  ++ QP +LLLDE TS LD+ S   V + L   A +G
Sbjct: 1163 TRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREG 1220
Query: 85   RIVVCSIHQPSS 96
            R  +   H+ S+
Sbjct: 1221 RTCIVIAHRLST 1232

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 24   ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83
            ET++G+   + +S G+K+R++I+  ++  P +LLLDE TS LD+ S   V + L   A +
Sbjct: 1208 ETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR-ARE 1265
Query: 84   GRIVVCSIHQ 93
            GR  +   H+
Sbjct: 1266 GRTCIVIAHR 1275

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 25  TKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84
           T++G   ++ IS G+++RL+I+   L  P +L+LDE T+ LDS S   V + L  + + G
Sbjct: 131 TEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL-MKG 188
Query: 85  RIVVCSIHQPSS 96
           R  +   H+ S+
Sbjct: 189 RTTLVIAHRLST 200

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 3   NDEINDIVEETIIKMGLQACAE---TKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLD 59
           NDE+    +   I   + A  E   T++G   L+ +S GEK+R++I+  IL  P ++LLD
Sbjct: 157 NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLD 215
Query: 60  EPTSGLDSAS 69
           E TS LD+++
Sbjct: 216 EATSALDTSN 225

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 21  ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80
           A  E +  N     +S G+++R++I+  +   P ++L D+PT  LDS +   ++Q+LK +
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKL 191
Query: 81  -ALDGRIVVCSIH 92
              DG+ VV   H
Sbjct: 192 NEEDGKTVVVVTH 204

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 12  ETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAF 71
           E + K+GL+  A     + +   +S G+ +R++I+  +  +P ++L DEPTS LD     
Sbjct: 142 ELLDKVGLKDKA-----HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 196
Query: 72  FVIQVLKCIALDGRIVVCSIHQ 93
            V+ V+K +A +G  +V   H+
Sbjct: 197 EVLSVMKQLANEGMTMVVVTHE 218

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 12  ETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAF 71
           E + K+GL+  A     + +   +S G+ +R++I+  +  +P ++L DEPTS LD     
Sbjct: 121 ELLDKVGLKDKA-----HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 175
Query: 72  FVIQVLKCIALDGRIVVCSIHQ 93
            V+ V+K +A +G  +V   H+
Sbjct: 176 EVLSVMKQLANEGMTMVVVTHE 197

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 17  MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQV 76
           M L    +T++G   ++ +S G+K+RLSI+   L  P +L+LDE TS LD  S   + + 
Sbjct: 461 MNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 519
Query: 77  LKCIALDGRIVVCSIHQPSS 96
           L  ++ D R  +   H+ S+
Sbjct: 520 LDVLSKD-RTTLIVAHRLST 538

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 2   TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEP 61
           ++ EI ++VE      GL    + ++  +     S G  ++L I+  ++  P + +LDEP
Sbjct: 119 SSSEIEEMVERATEIAGLGEKIKDRVSTY-----SKGMVRKLLIARALMVNPRLAILDEP 173
Query: 62  TSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
           TSGLD  +A  V ++LK  + +G  ++ S H 
Sbjct: 174 TSGLDVLNAREVRKILKQASQEGLTILVSSHN 205

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 15/82 (18%)
Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRG-----ISSGEKKRLSISIEILTQPTV 55
           +  DEI   V+  + + G++          HL+      +S G+KKR++I+  ++ +P V
Sbjct: 115 LPEDEIRKRVDNALKRTGIE----------HLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 164
Query: 56  LLLDEPTSGLDSASAFFVIQVL 77
           L+LDEPT+GLD      ++++L
Sbjct: 165 LILDEPTAGLDPMGVSEIMKLL 186

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
           DE+   V E +  +GL    ++   N     +S G+K+R++I+  + + P VLL DE TS
Sbjct: 115 DEVKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 64  GLDSASAFFVIQVLKCI 80
            LD A+   ++++LK I
Sbjct: 170 ALDPATTRSILELLKDI 186

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
           +S GE++R++I+  +  +P +L  DEPT  LDSA+   V+ +   I   G  +V   H+
Sbjct: 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 22/155 (14%)
Query: 33  RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA-SAFFVIQVLKCIALDGRIVVCSI 91
           + +S G+++R++I   ++ +P+V LLDEP S LD+A      I++ +     GR ++   
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 92  HQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRC----- 146
           H                +  + I   DA       A+ G P      P+D F+       
Sbjct: 192 HD----------QVEAMTLADKIVVLDAGR----VAQVGKPLELYHYPADRFVAGFIGSP 237
Query: 147 -INSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
            +N    KV  +++  Q   E+PM +  Q++L  E
Sbjct: 238 KMNFLPVKVTATAI-DQVQVELPMPNRQQVWLPVE 271

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
           G+S G+++R++I+  ++  P +L+ DE TS LD  S   +++ +  I   GR V+   H+
Sbjct: 141 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR 199
Query: 94  PSS 96
            S+
Sbjct: 200 LST 202

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
           G+S G+++R++I+  ++  P +L+ DE TS LD  S   +++ +  I   GR V+   H+
Sbjct: 141 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR 199
Query: 94  PSS 96
            S+
Sbjct: 200 LST 202

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 22/155 (14%)
Query: 33  RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA-SAFFVIQVLKCIALDGRIVVCSI 91
           + +S G+++R++I   ++ +P+V LLDEP S LD+A      I++ +     GR ++   
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 92  HQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRC----- 146
           H                +  + I   DA       A+ G P      P+D F+       
Sbjct: 192 HD----------QVEAMTLADKIVVLDAGR----VAQVGKPLELYHYPADRFVAGFIGSP 237
Query: 147 -INSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
            +N    KV  +++  Q   E+PM +  Q++L  E
Sbjct: 238 KMNFLPVKVTATAI-DQVQVELPMPNRQQVWLPVE 271

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
           G+S G+++R++I+  ++  P +L+ DE TS LD  S   +++ +  I   GR V+   H+
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR 197
Query: 94  PSS 96
            S+
Sbjct: 198 LST 200

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 34  GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
           G+S G+++R++I+  ++  P +L+ DE TS LD  S   +++ +  I   GR V+   H+
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR 203
Query: 94  PSS 96
            S+
Sbjct: 204 LST 206

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	437
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	8e-13
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	1e-12
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	4e-11
1sgw_A	214	Putative ABC transporter; structural genomics, P p	2e-10
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	1e-08
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	4e-06
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	2e-08
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	5e-08
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-07
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	4e-07
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	3e-07
2ghi_A	260	Transport protein; multidrug resistance protein, M	3e-07
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	5e-07
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-05
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	5e-07
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	9e-07
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-06
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	1e-06
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	2e-06
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	4e-06
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	5e-06
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	2e-05
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	8e-06
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	4e-05
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	2e-04
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-04
1g6h_A	257	High-affinity branched-chain amino acid transport	2e-04
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	2e-04
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-04
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	4e-04

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 67.2 bits (165), Expect = 8e-13
 Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 8/114 (7%)

Query: 8   DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS 67
            +  + +  + L   A+ +  +     +S G+++ + I+  I ++  ++LLDEPTS LD 
Sbjct: 107 QVAMQALDYLNLTHLAKREFTS-----LSGGQRQLILIARAIASECKLILLDEPTSALDL 161

Query: 68  ASAFFVIQVLKCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           A+   V+ +L  +A      VV + HQP + +  + +  LLL N +   FG+ +
Sbjct: 162 ANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLL-NKQNFKFGETR 213

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 8/119 (6%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
           DEI +   + +  +G+ A A+  IG      +S+GEK+R+ I+  ++ QP VL+LDEP +
Sbjct: 136 DEIRNEAHQLLKLVGMSAKAQQYIGY-----LSTGEKQRVMIARALMGQPQVLILDEPAA 190

Query: 64  GLDSASAFFVIQVLKCIALDGR--IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           GLD  +   ++ +L  ++       ++   H     +   F  +LLL +G++I  G  +
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQGAVE 248

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
            ++ EI ++VE      GL    + ++  +     S G  ++L I+  ++  P + +LDE
Sbjct: 118 SSSSEIEEMVERATEIAGLGEKIKDRVSTY-----SKGMVRKLLIARALMVNPRLAILDE 172

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92
           PTSGLD  +A  V ++LK  + +G  ++ S H
Sbjct: 173 PTSGLDVLNAREVRKILKQASQEGLTILVSSH 204

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 59.4 bits (145), Expect = 2e-10
 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 10  VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           + + +  + +    + K+G      +S G  +R+ ++  +L    + +LD+P   +D  S
Sbjct: 115 IMDALESVEVLD-LKKKLGE-----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168

Query: 70  AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETI 114
              V++ +  I  +  IV+ S    S       D    L    T 
Sbjct: 169 KHKVLKSILEILKEKGIVIIS----SREELSYCDVNENLHKYSTK 209

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 25/149 (16%)

Query: 7   NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
                + +  + +       I +  ++ +S GE +R++I + +     + L+DEP++ LD
Sbjct: 445 PQFQTDVVKPLRID-----DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLD 499

Query: 67  SASAFFVIQVLKCIALDGRIVVCSIHQPSSH----LFYLFDDLLLLSNGETIYFGDAKMA 122
           S       +V++   L  +     +     H      YL D +++     +         
Sbjct: 500 SEQRIICSKVIRRFILHNKKTAFIV----EHDFIMATYLADKVIVFEGIPSKN------- 548

Query: 123 VKFFAEAGFPCPSRRNPSDHFLRCINSDF 151
               A A  P        + FL+ +N  F
Sbjct: 549 ----AHARAPESLLTGC-NRFLKNLNVTF 572

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 14/119 (11%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           +  ++  + V+  I  + L+      +    +  +S GE +R +I +  + +  V + DE
Sbjct: 193 LRMEKSPEDVKRYIKILQLE-----NVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDE 247

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH----LFYLFDDLLLLSNGETIY 115
           P+S LD        Q+++ +    + V+C       H    L YL D + ++    ++Y
Sbjct: 248 PSSYLDVKQRLNAAQIIRSLLAPTKYVIC-----VEHDLSVLDYLSDFVCIIYGVPSVY 301

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 13/117 (11%)

Query: 8   DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSI-------SIEILTQPTVLLLDE 60
           +++ +    + L               +S GE +R+ +       + +      +LLLDE
Sbjct: 105 ELLNDVAGALALDDKLG-----RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE 159

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
           P + LD A    + ++L  ++  G  +V S H  +  L +      LL  G+ +  G
Sbjct: 160 PMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRH-AHRAWLLKGGKMLASG 215

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 52.9 bits (128), Expect = 5e-08
 Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 13/124 (10%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           +  DEI   V+  + + G++   +       L   S G+KKR++I+  ++ +P VL+LDE
Sbjct: 115 LPEDEIRKRVDNALKRTGIEHLKDKPT--HCL---SFGQKKRVAIAGVLVMEPKVLILDE 169

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH----LFYLFDDLLLLSNGETIYF 116
           PT+GLD      ++++L  +  +  I +       +H    +    D++ ++  G  I  
Sbjct: 170 PTAGLDPMGVSEIMKLLVEMQKELGITIIIA----THDIDIVPLYCDNVFVMKEGRVILQ 225

Query: 117 GDAK 120
           G+ K
Sbjct: 226 GNPK 229

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 25/149 (16%)

Query: 7   NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           +   EE   ++ L    E+     ++  +S GE ++L I+  +  +  + +LD+P+S LD
Sbjct: 363 SWFFEEVTKRLNLHRLLES-----NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417

Query: 67  SASAFFVIQVLKCIALDGRIVVCSIHQPSSH----LFYLFDDLLLLSNGETIYFGDAKMA 122
               + V + +K +  + + V   I     H      Y+ D +++   GE    G A   
Sbjct: 418 VEERYIVAKAIKRVTRERKAVTFII----DHDLSIHDYIADRIIVF-KGEPEKAGLATSP 472

Query: 123 VKFFAEAGFPCPSRRNPSDHFLRCINSDF 151
           V             +   + FLR +   F
Sbjct: 473 VTL-----------KTGMNEFLRELEVTF 490

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 14/124 (11%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           +T  +     +E    + +               +S G  +RL ++  +L +  V + D+
Sbjct: 110 LTKIDERGKKDEVKELLNMTNLWNKDANI-----LSGGGLQRLLVAASLLREADVYIFDQ 164

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH-LFYLFD--DLLLLSNGETIYFG 117
           P+S LD      + + ++ +  +  ++V        H L  L    DL+ +  GE+  +G
Sbjct: 165 PSSYLDVRERMNMAKAIRELLKNKYVIV------VDHDLIVLDYLTDLIHIIYGESSVYG 218

Query: 118 DAKM 121
               
Sbjct: 219 RVSK 222

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95
           S GEK+R++I+  I+ +P +L+LDEP  GLD      ++++++     G+ V+   H   
Sbjct: 140 SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI- 198

Query: 96  SHLFYLFDDLLLLSNGETIYFGDAK 120
             +    D +++L  G+ ++ G   
Sbjct: 199 ETVINHVDRVVVLEKGKKVFDGTRM 223

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 5/48 (10%)

Query: 24  ETKIGNWHLRGI--SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           +T +GN   +G+  S GE++R++I+  +L  P +++ DE TS LDS +
Sbjct: 146 DTIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 51.2 bits (122), Expect = 5e-07
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 12/90 (13%)

Query: 32  LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSI 91
           +RG+S G+K +L ++     +P +++LDEPT+ LD  S   + + LK    +G +++   
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK--EFEGGVIII-- 954

Query: 92  HQPSSHLFYLFD----DLLLLSNGETIYFG 117
               +H          ++  + +G     G
Sbjct: 955 ----THSAEFTKNLTEEVWAVKDGRMTPSG 980

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 6/76 (7%)

Query: 4   DEINDIVEETIIKMGL-QACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPT 62
               + +++ +I+ G         I       +S G K +L+++  +L    +LLLDEPT
Sbjct: 522 VGTKEAIKDKLIEFGFTDEMIAMPISA-----LSGGWKMKLALARAVLRNADILLLDEPT 576

Query: 63  SGLDSASAFFVIQVLK 78
           + LD+ +  +++  L 
Sbjct: 577 NHLDTVNVAWLVNYLN 592

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 5/48 (10%)

Query: 24  ETKIGNWHLRG--ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
            T++G    RG  +S GEK+R++I+  IL  P ++LLDE TS LD+++
Sbjct: 181 RTQVGE---RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSN 225

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 14/118 (11%)

Query: 7   NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
           N    E +  +G+    +  + +     +S GE +R++I+  +L    + LLDEP++ LD
Sbjct: 449 NFYKTELLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLD 503

Query: 67  SASAFFVIQVLKCIALDGRIVVCSIHQPSSH----LFYLFDDLLLLSNGETIYFGDAK 120
                 V + ++ +          +     H    + Y+ D L++   GE    G A 
Sbjct: 504 VEQRLAVSRAIRHLMEKNEKTALVV----EHDVLMIDYVSDRLIVF-EGEPGRHGRAL 556

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           +   +     EE + ++ L+   + ++       +S GE +R++I+  +L +      DE
Sbjct: 200 LKKVDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDE 254

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92
           P+S LD      V +V++ +A +G+ V+   H
Sbjct: 255 PSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 286

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 48.6 bits (117), Expect = 1e-06
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 5/48 (10%)

Query: 24  ETKIGNWHLRGI--SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
            T++G    RG+  S G+++RL+I+   L  P +L+LDE T+ LDS S
Sbjct: 130 NTEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 16/70 (22%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 24  ETKIGNWHLRGI--SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVL-KCI 80
           +T++G     G   S G+++ ++++  ++ +P +L+LD  TS LD+ +   V ++L +  
Sbjct: 147 DTEVGE---TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESP 203

Query: 81  ALDGR--IVV 88
               R  +++
Sbjct: 204 EWASRTVLLI 213

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)

Query: 24  ETKIGNWHLRGI--SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
            T +G    +G   S G+++R++I+  ++  P +L+ DE TS LD  S
Sbjct: 136 NTIVGE---QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 14/71 (19%)

Query: 24   ETKIGNWHLRG--ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81
             T++G+   +G  +S G+K+R++I+  ++ QP +LLLDE TS LD+ S   V +     A
Sbjct: 1162 NTRVGD---KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQE-----A 1213

Query: 82   LD----GRIVV 88
            LD    GR  +
Sbjct: 1214 LDKAREGRTCI 1224

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 5/48 (10%)

Query: 24  ETKIGNWHLRGI--SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           +T +G    RG   S G+K+R++I+  ++  P +LLLDE TS LD+ S
Sbjct: 517 DTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 8/76 (10%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
             N    E +  +G+       + +  +  +S GE +R++I+  +L    + LLDEP++ 
Sbjct: 377 NSNFYKTELLKPLGI-----IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAY 431

Query: 65  LDSASAFFVIQVLKCI 80
           LD       + V + I
Sbjct: 432 LDVEQR---LAVSRAI 444

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           +   +    +EE +  + L+   E +I +     +S GE +R++I+  +L   T    DE
Sbjct: 130 LKKADETGKLEEVVKALELENVLEREIQH-----LSGGELQRVAIAAALLRNATFYFFDE 184

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92
           P+S LD        + ++ ++ +G+ V+   H
Sbjct: 185 PSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 45/341 (13%), Positives = 90/341 (26%), Gaps = 107/341 (31%)

Query: 51  TQPTVLLLDEPTSGL--DSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL 108
              T + LD  +  L  D   +   ++ L C   D    V + + P              
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREVLTTN-P-------------- 327

Query: 109 SNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTE-- 166
                         +   AE+           D++          +  SSL    P E  
Sbjct: 328 ------------RRLSIIAES---IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 167 --------------IP----------MSSNSQMYLSTEEIKAKLVEEYRNSE------IS 196
                         IP          +  +  M +  +  K  LVE+           I 
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 197 MDIRQRVRELA--HNEQEETVLSKDRASWWKQLCILSHRSFLNMLRDMGYYWLRIVFYVL 254
           ++++ ++      H    +                      L       Y++  I  + L
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDD----------LIPPYLDQYFYSHIG-HHL 481

Query: 255 VSITVG-------ILYLNVG-LSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASY 306
            +I          +++L+   L     +      A           G + + +++ K  Y
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA----------SGSILNTLQQLK-FY 530

Query: 307 RERISCH---YGEAVFVLSNFLSSF-------PFLVILSIS 337
           +  I  +   Y   V  + +FL           +  +L I+
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 5/48 (10%)

Query: 24  ETKIGNWHLRG--ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           +T++G    RG  +S G+K+RLSI+   L  P +L+LDE TS LD  S
Sbjct: 468 DTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 5/48 (10%)

Query: 24  ETKIGNWHLRG--ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           +T IG     G  +S G+++R++I+  +L    +L+LDE TS LD+ S
Sbjct: 471 DTIIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
           E+ +   + +  + L    + K G      +S G+ K + I   ++T P ++++DEP +G
Sbjct: 129 EMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAG 183

Query: 65  L 65
           +
Sbjct: 184 V 184

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 33/59 (55%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           S GE++R++I+  +  +P +L  DEPT  LDSA+   V+ +   I   G  +V   H+ 
Sbjct: 142 SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 5/48 (10%)

Query: 24  ETKIGNWHLRG--ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           +T IG     G  +S G+++R++I+  +L    VL+LDE TS LD+ S
Sbjct: 471 DTVIGE---NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 36  SSGEKKRLSISIEI------LTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR-IVV 88
           S GE+  L ++  +        + ++L+LDEPT  LD      +I +++        +++
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 309

Query: 89  CS 90
            S
Sbjct: 310 VS 311

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	437
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.93
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.92
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.92
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.92
1g6h_A	257	High-affinity branched-chain amino acid transport	99.92
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.92
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.91
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.91
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.91
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.91
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.91
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.91
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.91
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.91
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.91
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.91
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.91
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.91
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.91
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.91
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.91
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.9
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.9
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.9
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.9
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.89
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.88
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.88
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.87
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.87
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.87
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.87
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.85
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.84
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.84
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.84
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.84
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.84
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.83
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.82
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.82
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.82
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.81
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.81
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.81
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.81
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.8
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.79
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.79
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.79
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.78
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.78
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.78
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.77
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.77
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.77
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.76
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.76
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.75
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.75
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.75
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.74
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.74
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.74
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.74
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.73
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.73
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.72
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.7
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.68
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.56
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.55
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.55
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.55
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.54
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.47
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.46
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.4
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.35
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.34
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.16
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.13
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.98
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.94
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.93
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.7
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.64
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.62
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.61
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.61
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.59
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.56
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.47
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.33
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.31
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.29
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.22
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.19
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.16
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.14
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.13
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.11
2og2_A	359	Putative signal recognition particle receptor; nuc	98.09
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.03
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.01
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.93
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.89
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.89
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.79
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.77
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.77
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.74
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.45
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.4
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.29
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.29
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.22
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.07
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.05
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.95
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.47
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.41
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.39
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.27
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.24
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.01
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.99
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.83
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.82
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.81
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.8
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	95.7
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.23
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	95.16
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	94.88
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	94.37
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	93.61
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	93.48
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	93.34
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	92.91
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	92.36
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	92.29
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	91.55
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	91.47
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	91.47
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	90.9
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	90.6
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	90.24
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	88.33
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	87.34
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	85.27
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	84.94
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	83.98
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	80.74

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.93  E-value=1.4e-25  Score=216.69  Aligned_cols=117  Identities=26%  Similarity=0.443  Sum_probs=106.5

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.+++++++++.+||.+.++..++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus       116 ~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~  190 (275)
T 3gfo_A          116 PEDEIRKRVDNALKRTGIEHLKDKPTH-----CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ  190 (275)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCchhhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence            355667899999999999988877664     699999999999999999999999999999999999999999999998


Q ss_pred             -hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           82 -LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        82 -~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                       ++|.|||+++|++. .+.+++|++++|++|++++.|+++++.+
T Consensus       191 ~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~~~  233 (275)
T 3gfo_A          191 KELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA  233 (275)
T ss_dssp             HHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred             hhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence             56999999999985 5788999999999999999999988643

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.92  E-value=3.5e-25  Score=220.87  Aligned_cols=116  Identities=28%  Similarity=0.371  Sum_probs=106.1

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.+++++++++.+||.+.++...     ..|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|++++
T Consensus       136 ~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~  210 (366)
T 3tui_C          136 PKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN  210 (366)
T ss_dssp             CHHHHHHHHHHHHHHHTCGGGTTCCT-----TTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence            45667789999999999998777655     5699999999999999999999999999999999999999999999998


Q ss_pred             h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + .|.|||+++|++ ..+.++|||+++|++|+++..|+++++.
T Consensus       211 ~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ev~  252 (366)
T 3tui_C          211 RRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVF  252 (366)
T ss_dssp             HHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred             HhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            7 599999999996 4788999999999999999999998764

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.92  E-value=7.3e-25  Score=210.40  Aligned_cols=115  Identities=26%  Similarity=0.360  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +++.+++++++++.+||.+..+..++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       133 ~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~  207 (263)
T 2olj_A          133 REKAEAKAMELLDKVGLKDKAHAYPD-----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN  207 (263)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence            34556789999999999988776654     6999999999999999999999999999999999999999999999988


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +|+|||+++|++. ++.+++|++++|++|++++.|+++++.
T Consensus       208 ~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~  247 (263)
T 2olj_A          208 EGMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKPEDLF  247 (263)
T ss_dssp             TTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             CCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            8999999999964 678899999999999999999998764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.92  E-value=6.7e-25  Score=210.73  Aligned_cols=115  Identities=23%  Similarity=0.365  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            3 NDEINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      +++.+++++++++.+||.+. ++..++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus       126 ~~~~~~~~~~~l~~~~L~~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~  200 (262)
T 1b0u_A          126 KHDARERALKYLAKVGIDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA  200 (262)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCchhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence            34556789999999999987 776654     699999999999999999999999999999999999999999999998


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ++|.|||+++|++. ++.+++|++++|++|+++..|+++++.
T Consensus       201 ~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~  241 (262)
T 1b0u_A          201 EEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGDPEQVF  241 (262)
T ss_dssp             HTTCCEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             hCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            88999999999964 678899999999999999999998764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.92  E-value=8.3e-25  Score=209.54  Aligned_cols=111  Identities=21%  Similarity=0.327  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +.+++++++++.+||++..++.++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus       129 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g  203 (257)
T 1g6h_A          129 EMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG  203 (257)
T ss_dssp             HHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCchhhCCCch-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC
Confidence            455789999999999988877664     699999999999999999999999999999999999999999999998889


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM  121 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~  121 (437)
                      .|||+++|++. ++.+++|++++|++|++++.|++++
T Consensus       204 ~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~  239 (257)
T 1g6h_A          204 ITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEE  239 (257)
T ss_dssp             CEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHH
T ss_pred             CEEEEEecCHH-HHHHhCCEEEEEECCEEEEEeCHHH
Confidence            99999999975 5778999999999999999999887

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.92  E-value=1.6e-24  Score=207.35  Aligned_cols=115  Identities=29%  Similarity=0.431  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.+++++++++.+||.+..++.++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       121 ~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~  195 (256)
T 1vpl_A          121 SEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE  195 (256)
T ss_dssp             HHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhC
Confidence            3445688999999999988877654     69999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      |+|||+++|++. ++..++|++++|++|++++.|+++++.+
T Consensus       196 g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~  235 (256)
T 1vpl_A          196 GLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKE  235 (256)
T ss_dssp             TCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             CCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence            999999999974 6778899999999999999999887754

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.91  E-value=2.8e-24  Score=214.13  Aligned_cols=117  Identities=17%  Similarity=0.271  Sum_probs=105.8

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.+++++++++.+||++.+|.++     ..|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus       111 ~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~  185 (359)
T 3fvq_A          111 RTAQERQRIEAMLELTGISELAGRYP-----HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAAL  185 (359)
T ss_dssp             CSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            34567789999999999998887765     4699999999999999999999999999999999999999999888876


Q ss_pred             h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      + .|.|+|+++|+. .++..++||+++|++|+++..|+++++.+
T Consensus       186 ~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el~~  228 (359)
T 3fvq_A          186 RANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHELYR  228 (359)
T ss_dssp             HHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence            5 699999999996 57899999999999999999999988743

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.91  E-value=3.3e-24  Score=215.09  Aligned_cols=117  Identities=24%  Similarity=0.387  Sum_probs=107.1

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.+++++++++.+||.+..+.++     ..|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus       106 ~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~  180 (381)
T 3rlf_A          106 KKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH  180 (381)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence            45677789999999999998777655     5699999999999999999999999999999999999999999999998


Q ss_pred             hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      ++ |.|+|+++|++ .++..++||+++|++|+++..|+++++.+
T Consensus       181 ~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~~  223 (381)
T 3rlf_A          181 KRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH  223 (381)
T ss_dssp             HHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence            74 99999999996 57999999999999999999999998743

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.91  E-value=1.9e-24  Score=204.34  Aligned_cols=113  Identities=23%  Similarity=0.325  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHcCCcccc-cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            3 NDEINDIVEETIIKMGLQACA-ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         3 ~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      +++..+++.++++.+||.+.. +..+     ..|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|++++
T Consensus       118 ~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~  192 (235)
T 3tif_A          118 GEERRKRALECLKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN  192 (235)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            455667899999999998643 5544     5799999999999999999999999999999999999999999999998


Q ss_pred             hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      ++ |.|||+++|++.  +.+++|++++|++|+++..|++++.
T Consensus       193 ~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~~  232 (235)
T 3tif_A          193 EEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRGF  232 (235)
T ss_dssp             HHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC--
T ss_pred             HHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhhh
Confidence            75 999999999975  4589999999999999999987754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.91  E-value=1.8e-24  Score=203.02  Aligned_cols=109  Identities=26%  Similarity=0.317  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++.+++++++++.+||.+..+..++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus       115 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~  189 (224)
T 2pcj_A          115 KEAKERGEYLLSELGLGDKLSRKPY-----ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG  189 (224)
T ss_dssp             HHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence            4456789999999999988776654     69999999999999999999999999999999999999999999999888


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeCh
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA  119 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~  119 (437)
                      |+|||+++|++. .+ +++|++++|++|++++.|+.
T Consensus       190 g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~~  223 (224)
T 2pcj_A          190 GTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGEITR  223 (224)
T ss_dssp             TCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEEC
T ss_pred             CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEeee
Confidence            999999999964 45 89999999999999999863

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.91  E-value=1.9e-24  Score=207.98  Aligned_cols=113  Identities=22%  Similarity=0.367  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILT------QPTVLLLDEPTSGLDSASAFFVIQVLK   78 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~------~p~ll~lDEPtsgLD~~~~~~i~~~l~   78 (437)
                      +.+++++++++.+||.+..+..++     .|||||||||+||++|+.      +|++|+|||||+|||+.++.++++.|+
T Consensus       117 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~  191 (266)
T 4g1u_C          117 QDRQALQQVMAQTDCLALAQRDYR-----VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR  191 (266)
T ss_dssp             THHHHHHHHHHHTTCSTTTTSBGG-----GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence            456789999999999988777654     699999999999999999      999999999999999999999999999


Q ss_pred             HHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           79 CIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        79 ~l~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +++++ |.|||+++|++ .++.++|||+++|++|++++.|+++++.
T Consensus       192 ~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g~~~~~~  236 (266)
T 4g1u_C          192 QLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACGTPEEVL  236 (266)
T ss_dssp             HHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred             HHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence            99875 57999999996 4688899999999999999999998763

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.91  E-value=2e-24  Score=204.75  Aligned_cols=111  Identities=24%  Similarity=0.361  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCC
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~   85 (437)
                      +++++++++.+||.+..+..++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ +|+
T Consensus       104 ~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~  178 (240)
T 2onk_A          104 DRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV  178 (240)
T ss_dssp             HHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence            5688999999999988777654     6999999999999999999999999999999999999999999999976 499


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |||+++|++. ++..++|++++|++|+++..|+++++.
T Consensus       179 tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  215 (240)
T 2onk_A          179 PILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELF  215 (240)
T ss_dssp             CEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             EEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            9999999964 678899999999999999999988764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.91  E-value=5.6e-24  Score=211.98  Aligned_cols=116  Identities=23%  Similarity=0.356  Sum_probs=105.8

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.+++++++++.+||++.+|.+.     +.|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|++++
T Consensus       118 ~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  192 (355)
T 1z47_A          118 PKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVH  192 (355)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            34566789999999999998877665     4699999999999999999999999999999999999999999999998


Q ss_pred             h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + .|.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus       193 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~  234 (355)
T 1z47_A          193 DEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVY  234 (355)
T ss_dssp             HHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            7 499999999996 5788999999999999999999998774

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.91  E-value=2.7e-24  Score=203.93  Aligned_cols=114  Identities=20%  Similarity=0.282  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHcC-CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            4 DEINDIVEETIIKMG-LQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      ++.+++++++++.++ |.+..+..+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       113 ~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~  187 (240)
T 1ji0_A          113 EGIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ  187 (240)
T ss_dssp             SHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHhhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence            345567889999995 987766655     46999999999999999999999999999999999999999999999988


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +|+|||+++|++. ++.+++|++++|++|+++..|+++++.
T Consensus       188 ~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~  227 (240)
T 1ji0_A          188 EGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASELL  227 (240)
T ss_dssp             TTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred             CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence            8999999999974 678899999999999999999987663

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.91  E-value=6.5e-24  Score=211.88  Aligned_cols=116  Identities=23%  Similarity=0.375  Sum_probs=105.9

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.+++++++++.+||++..+.++     +.|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus       113 ~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  187 (353)
T 1oxx_K          113 SKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ  187 (353)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence            34566789999999999998877665     4699999999999999999999999999999999999999999999997


Q ss_pred             h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + .|.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus       188 ~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~  229 (353)
T 1oxx_K          188 SRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLY  229 (353)
T ss_dssp             HHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            6 499999999996 4788999999999999999999998774

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.91  E-value=1.1e-23  Score=211.60  Aligned_cols=116  Identities=24%  Similarity=0.355  Sum_probs=105.8

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.+++++++++.+||++..+.++     ..|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus       112 ~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  186 (372)
T 1g29_1          112 PRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ  186 (372)
T ss_dssp             CHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCchHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHH
Confidence            34566788999999999998877665     4699999999999999999999999999999999999999999999998


Q ss_pred             h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + .|.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus       187 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~  228 (372)
T 1g29_1          187 RQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVY  228 (372)
T ss_dssp             HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence            7 499999999996 5788999999999999999999998874

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.91  E-value=4.1e-24  Score=205.69  Aligned_cols=114  Identities=23%  Similarity=0.388  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHcCCc--ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            5 EINDIVEETIIKMGLQ--ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +.+++++++++.+||.  +..+..+     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       112 ~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~  186 (266)
T 2yz2_A          112 DPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT  186 (266)
T ss_dssp             CSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence            3356789999999998  7777665     46999999999999999999999999999999999999999999999987


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      +|+|||+++|++. .+..++|++++|++|+++..|+++++.+
T Consensus       187 ~g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~  227 (266)
T 2yz2_A          187 LGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLE  227 (266)
T ss_dssp             TTCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             cCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            7999999999985 5777899999999999999999887653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.91  E-value=7.2e-24  Score=211.85  Aligned_cols=116  Identities=25%  Similarity=0.365  Sum_probs=105.7

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.+++++++++.+||++..+.+.     +.|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|++++
T Consensus       106 ~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  180 (362)
T 2it1_A          106 PREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQ  180 (362)
T ss_dssp             CHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence            34566788999999999998877655     4699999999999999999999999999999999999999999999997


Q ss_pred             h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      + .|.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus       181 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~  222 (362)
T 2it1_A          181 KELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVY  222 (362)
T ss_dssp             HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            6 499999999996 4788999999999999999999998874

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.91  E-value=7.8e-24  Score=202.24  Aligned_cols=111  Identities=26%  Similarity=0.402  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-   83 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~-   83 (437)
                      +.+++++++++.+||.+..+..++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ 
T Consensus       104 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~  178 (253)
T 2nq2_C          104 HDYQVAMQALDYLNLTHLAKREFT-----SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ  178 (253)
T ss_dssp             HHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHcCChHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence            445689999999999988777654     69999999999999999999999999999999999999999999999886 


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      |+|||+++|++. .+.+++|++++|++|+ ++.|+++++
T Consensus       179 g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~~  215 (253)
T 2nq2_C          179 NMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRNI  215 (253)
T ss_dssp             CCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred             CCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHHH
Confidence            999999999974 6778999999999999 999998765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.91  E-value=3.9e-24  Score=207.11  Aligned_cols=112  Identities=29%  Similarity=0.456  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +..++++++++.+||.+..+..++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|
T Consensus       137 ~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g  211 (279)
T 2ihy_A          137 EIRNEAHQLLKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSY  211 (279)
T ss_dssp             HHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCC
Confidence            345688999999999988877664     699999999999999999999999999999999999999999999998779


Q ss_pred             CEE--EEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           85 RIV--VCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        85 ~tv--i~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      +||  |+++|++. ++.+++|++++|++|++++.|+++++
T Consensus       212 ~tv~~iivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~  250 (279)
T 2ihy_A          212 PTLAMIYVTHFIE-EITANFSKILLLKDGQSIQQGAVEDI  250 (279)
T ss_dssp             TTCEEEEEESCGG-GCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred             CEEEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence            999  99999975 67789999999999999999998765

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.91  E-value=7.3e-24  Score=211.58  Aligned_cols=115  Identities=23%  Similarity=0.383  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-   82 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-   82 (437)
                      ++.+++++++++.+||++..+.+.     ..|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.+ 
T Consensus       108 ~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~  182 (359)
T 2yyz_A          108 DEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE  182 (359)
T ss_dssp             HHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence            344578999999999998877665     46999999999999999999999999999999999999999999999977 


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      .|.|+|+++|++ .++..++|++++|++|+++..|+++++.+
T Consensus       183 ~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~  223 (359)
T 2yyz_A          183 LGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD  223 (359)
T ss_dssp             HCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            499999999996 47889999999999999999999988743

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.90  E-value=1.1e-23  Score=202.70  Aligned_cols=122  Identities=26%  Similarity=0.371  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            4 DEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      ++.+++++++++.+||. +..+..++    ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++
T Consensus       137 ~~~~~~~~~~l~~~gl~~~~~~~~~~----~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~  212 (267)
T 2zu0_C          137 FDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD  212 (267)
T ss_dssp             HHHHHHHHHHHHHTTCCTTTTTSBTT----TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHcCCChhHhcCCcc----cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence            34456899999999996 45555443    14999999999999999999999999999999999999999999999977


Q ss_pred             cCCEEEEEecCCchHHHhh-cCeEEEEeCCeEEEeeChhHHHHHHHHcCC
Q 013741           83 DGRIVVCSIHQPSSHLFYL-FDDLLLLSNGETIYFGDAKMAVKFFAEAGF  131 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~-fd~v~~L~~G~~v~~G~~~~~~~~f~~~g~  131 (437)
                      +|+|||+++|++. .+..+ +|++++|++|++++.|+++++.. .++.|+
T Consensus       213 ~g~tviivtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~  260 (267)
T 2zu0_C          213 GKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQGY  260 (267)
T ss_dssp             SSCEEEEECSSGG-GGGTSCCSEEEEEETTEEEEEECTTHHHH-HHTTTC
T ss_pred             cCCEEEEEeeCHH-HHHhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcch
Confidence            7999999999975 45565 89999999999999999987643 344444

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.90  E-value=1.1e-23  Score=211.23  Aligned_cols=116  Identities=20%  Similarity=0.320  Sum_probs=105.9

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.+++++++++.+||++.++.+.     ..|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++.
T Consensus       114 ~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~  188 (372)
T 1v43_A          114 PKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ  188 (372)
T ss_dssp             CHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence            34566788999999999998877655     4699999999999999999999999999999999999999999999998


Q ss_pred             hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ++ |.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus       189 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~  230 (372)
T 1v43_A          189 QKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVY  230 (372)
T ss_dssp             HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            74 99999999996 4788999999999999999999998874

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.90  E-value=8.7e-24  Score=201.62  Aligned_cols=111  Identities=23%  Similarity=0.286  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHcCC-cccccccccCcccCC-CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            5 EINDIVEETIIKMGL-QACAETKIGNWHLRG-ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L-~~~~~~~vg~~~~~~-lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      +..++++++++.+|| .+..++.++     . |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus       117 ~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~  191 (250)
T 2d2e_A          117 EFWTKVKKALELLDWDESYLSRYLN-----EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG  191 (250)
T ss_dssp             HHHHHHHHHHHHHTCCGGGGGSBTT-----CC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHcCCChhHhcCCcc-----cCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence            445678999999999 577776554     5 999999999999999999999999999999999999999999999977


Q ss_pred             cCCEEEEEecCCchHHHhh-cCeEEEEeCCeEEEeeChhH
Q 013741           83 DGRIVVCSIHQPSSHLFYL-FDDLLLLSNGETIYFGDAKM  121 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~-fd~v~~L~~G~~v~~G~~~~  121 (437)
                      +|+|||+++|++. .+..+ +|++++|++|++++.|+++.
T Consensus       192 ~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~  230 (250)
T 2d2e_A          192 PNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPEL  230 (250)
T ss_dssp             TTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred             cCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHHH
Confidence            8999999999975 56666 59999999999999999873

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.90  E-value=2.3e-23  Score=198.47  Aligned_cols=110  Identities=23%  Similarity=0.341  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPT-------VLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~-------ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      +++++++++.+||.+..+..+     ..|||||||||+||++|+.+|+       +|+|||||+|||+.++..+.+.|++
T Consensus       104 ~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~  178 (249)
T 2qi9_C          104 TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA  178 (249)
T ss_dssp             HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHH
Confidence            467899999999998877655     4699999999999999999999       9999999999999999999999999


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      ++++|+|||+++|++. .+.+++|++++|++|+++..|+++++
T Consensus       179 l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~  220 (249)
T 2qi9_C          179 LSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEV  220 (249)
T ss_dssp             HHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred             HHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9878999999999964 67789999999999999999998765

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.89  E-value=3.9e-23  Score=205.60  Aligned_cols=110  Identities=22%  Similarity=0.346  Sum_probs=102.0

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI   86 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~t   86 (437)
                      ++++++++.+||++..|.+.     +.|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++++ .|.|
T Consensus       106 ~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~t  180 (348)
T 3d31_A          106 KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT  180 (348)
T ss_dssp             HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCE
Confidence            68999999999998877665     46999999999999999999999999999999999999999999999976 5999


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus       181 ii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~  216 (348)
T 3d31_A          181 VLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF  216 (348)
T ss_dssp             EEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred             EEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            99999996 4788999999999999999999998764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.88  E-value=1.7e-22  Score=192.35  Aligned_cols=113  Identities=23%  Similarity=0.366  Sum_probs=97.6

Q ss_pred             HHHHHHHHHcCCccccccccc------CcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQACAETKIG------NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg------~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++++++.+++.+..+....      +..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus       113 ~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~  192 (247)
T 2ff7_A          113 EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC  192 (247)
T ss_dssp             HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence            467788888998876654321      23457899999999999999999999999999999999999999999999995


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       +|+|||+++|++. .+ ..+|++++|++|++++.|+++++.
T Consensus       193 -~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~  231 (247)
T 2ff7_A          193 -KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHKELL  231 (247)
T ss_dssp             -TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred             -CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence             5899999999976 34 459999999999999999988764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.88  E-value=2e-22  Score=193.36  Aligned_cols=108  Identities=18%  Similarity=0.195  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      +++++++++.+||. +..+..+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++   
T Consensus       105 ~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---  176 (263)
T 2pjz_A          105 RDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---  176 (263)
T ss_dssp             HHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---
T ss_pred             HHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---
Confidence            45789999999998 8777665     46999999999999999999999999999999999999999999998754   


Q ss_pred             EEEEEecCCchHHHhhcC-eEEEEeCCeEEEeeChhHHH
Q 013741           86 IVVCSIHQPSSHLFYLFD-DLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd-~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |+|+++|++. ++.+++| ++++|++|++++.|+++++.
T Consensus       177 tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~~l~  214 (263)
T 2pjz_A          177 EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVSELL  214 (263)
T ss_dssp             EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred             cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHHHHH
Confidence            9999999974 5778999 99999999999999998764

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.87  E-value=2.3e-22  Score=193.93  Aligned_cols=109  Identities=20%  Similarity=0.264  Sum_probs=93.8

Q ss_pred             HHHHHHHHc--CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCC
Q 013741            9 IVEETIIKM--GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGR   85 (437)
Q Consensus         9 ~v~~~l~~l--~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~   85 (437)
                      .++++++.+  ||.+..+..     +..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ +|+
T Consensus       134 ~~~~~l~~l~~gl~~~~~~~-----~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~  208 (271)
T 2ixe_A          134 GAHDFISGFPQGYDTEVGET-----GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASR  208 (271)
T ss_dssp             TCHHHHHHSTTGGGSBCCGG-----GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTS
T ss_pred             hHHHHHHhhhcchhhhhcCC-----cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCC
Confidence            345677777  666555544     457999999999999999999999999999999999999999999999875 589


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      |||+++|++. .+ ..+|++++|++|+++..|+++++.+
T Consensus       209 tviivtHd~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~~  245 (271)
T 2ixe_A          209 TVLLITQQLS-LA-ERAHHILFLKEGSVCEQGTHLQLME  245 (271)
T ss_dssp             EEEEECSCHH-HH-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             EEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999975 44 4599999999999999999987643

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.87  E-value=1.7e-22  Score=191.81  Aligned_cols=113  Identities=25%  Similarity=0.316  Sum_probs=98.4

Q ss_pred             HHHHHHHHHcCCccccccccc------CcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQACAETKIG------NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg------~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++++++.+++.+..+....      +..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus       107 ~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~  186 (243)
T 1mv5_A          107 EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM  186 (243)
T ss_dssp             HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc
Confidence            467889999999877654321      23457899999999999999999999999999999999999999999999997


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       +|+|||+++|++. .+ ..+|++++|++|+++..|+++++.
T Consensus       187 -~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~  225 (243)
T 1mv5_A          187 -KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNELV  225 (243)
T ss_dssp             -TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHHHH
T ss_pred             -CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHH
Confidence             6899999999975 44 469999999999999999988764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.87  E-value=7.8e-22  Score=193.03  Aligned_cols=113  Identities=27%  Similarity=0.420  Sum_probs=96.2

Q ss_pred             HHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +.+++.++..++.+.       .++.+|. ....||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|+++
T Consensus       158 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l  236 (306)
T 3nh6_A          158 DEVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV  236 (306)
T ss_dssp             HHHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            456667777776553       3455553 45689999999999999999999999999999999999999999999998


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      .+ ++|+|+++|+++ .+.. +|+|++|++|+++..|+.+++.+
T Consensus       237 ~~-~~Tvi~itH~l~-~~~~-aD~i~vl~~G~iv~~G~~~el~~  277 (306)
T 3nh6_A          237 CA-NRTTIVVAHRLS-TVVN-ADQILVIKDGCIVERGRHEALLS  277 (306)
T ss_dssp             HT-TSEEEEECCSHH-HHHT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred             cC-CCEEEEEEcChH-HHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence            65 689999999975 4554 99999999999999999998764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.87  E-value=1.2e-21  Score=187.95  Aligned_cols=112  Identities=23%  Similarity=0.381  Sum_probs=95.7

Q ss_pred             HHHHHHHHHcCCcccc-------cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQACA-------ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~-------~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +++.+.++.++|.+..       |+.++ ..+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++
T Consensus       123 ~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l  201 (260)
T 2ghi_A          123 EEVIKATKSAQLYDFIEALPKKWDTIVG-NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL  201 (260)
T ss_dssp             HHHHHHHHHTTCHHHHHTSTTGGGCEES-SSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHhcccccccccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence            4566778877776543       33343 346789999999999999999999999999999999999999999999999


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ++ |+|||+++|++.. + ..+|++++|++|+++..|+++++.
T Consensus       202 ~~-~~tviivtH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~  241 (260)
T 2ghi_A          202 RK-NRTLIIIAHRLST-I-SSAESIILLNKGKIVEKGTHKDLL  241 (260)
T ss_dssp             TT-TSEEEEECSSGGG-S-TTCSEEEEEETTEEEEEECHHHHH
T ss_pred             cC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence            65 8999999999863 4 459999999999999999998764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.85  E-value=1.4e-21  Score=197.11  Aligned_cols=115  Identities=18%  Similarity=0.235  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHcCCcccccccccC------cccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQACAETKIGN------WHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~------~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +++++++++.++|.+..+...+.      ...+.|||||||||+||++|+.+|++|+|||||+|||+..+.++.+.|+++
T Consensus       122 ~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~  201 (390)
T 3gd7_A          122 DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA  201 (390)
T ss_dssp             HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence            45788999999999877765532      122349999999999999999999999999999999999999999999986


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      . .+.|+|+++|++.  ....+||+++|++|+++..|+++++.+
T Consensus       202 ~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~i~~~g~~~el~~  242 (390)
T 3gd7_A          202 F-ADCTVILCEARIE--AMLECDQFLVIEENKVRQYDSILELYH  242 (390)
T ss_dssp             T-TTSCEEEECSSSG--GGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred             h-CCCEEEEEEcCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            4 5789999999963  456799999999999999999998753

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.84  E-value=1.2e-20  Score=200.65  Aligned_cols=114  Identities=23%  Similarity=0.319  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      +++++++++..++.+.       .||.+|. ....||||||||++|||+|+++|++++|||||+|||+.+..++.+.|++
T Consensus       447 ~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~  525 (582)
T 3b60_A          447 REQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE  525 (582)
T ss_dssp             HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            3567888888888764       3555654 4578999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      +++ |+|+|+++|+++. + +.+|++++|++|+++..|+.+++.+
T Consensus       526 ~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~  567 (582)
T 3b60_A          526 LQK-NRTSLVIAHRLST-I-EQADEIVVVEDGIIVERGTHSELLA  567 (582)
T ss_dssp             HHT-TSEEEEECSCGGG-T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HhC-CCEEEEEeccHHH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence            875 8999999999863 4 5799999999999999999988754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.84  E-value=9.2e-21  Score=179.25  Aligned_cols=91  Identities=19%  Similarity=0.309  Sum_probs=81.7

Q ss_pred             cccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhcCCEEEEEecCCchHHHhhcCeEE
Q 013741           30 WHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLK---CIALDGRIVVCSIHQPSSHLFYLFDDLL  106 (437)
Q Consensus        30 ~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~---~l~~~g~tvi~t~hqp~~~i~~~fd~v~  106 (437)
                      ..+..|||||||||+||++|+.+|++++|||||+|||+.++..+++.|+   +++ +|+|+|+++|++.. + ..+|+++
T Consensus       123 ~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~  199 (237)
T 2cbz_A          123 EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVII  199 (237)
T ss_dssp             TTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEE
Confidence            3567899999999999999999999999999999999999999999995   443 58999999999864 4 5799999


Q ss_pred             EEeCCeEEEeeChhHHH
Q 013741          107 LLSNGETIYFGDAKMAV  123 (437)
Q Consensus       107 ~L~~G~~v~~G~~~~~~  123 (437)
                      +|++|+++..|+++++.
T Consensus       200 ~l~~G~i~~~g~~~~~~  216 (237)
T 2cbz_A          200 VMSGGKISEMGSYQELL  216 (237)
T ss_dssp             EEETTEEEEEECHHHHH
T ss_pred             EEeCCEEEEeCCHHHHh
Confidence            99999999999998764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.84  E-value=7e-21  Score=179.14  Aligned_cols=110  Identities=18%  Similarity=0.265  Sum_probs=89.7

Q ss_pred             HHHHHHHcCCcccccc-------cccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHH
Q 013741           10 VEETIIKMGLQACAET-------KIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQV-LKCIA   81 (437)
Q Consensus        10 v~~~l~~l~L~~~~~~-------~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~-l~~l~   81 (437)
                      +++.++.+++.+..+.       .++ .....||||||||++||++|+.+|++++|||||+|||+.++..+.+. +++++
T Consensus       100 ~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~  178 (229)
T 2pze_A          100 YRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM  178 (229)
T ss_dssp             HHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT
T ss_pred             HHHHHHHhCcHHHHHhCccccccccc-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh
Confidence            4456666666544332       232 23568999999999999999999999999999999999999999997 45654


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       +|+|||+++|++. .+ ..+|++++|++|+++..|+++++.
T Consensus       179 -~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~  217 (229)
T 2pze_A          179 -ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ  217 (229)
T ss_dssp             -TTSEEEEECCCHH-HH-HHCSEEEEEETTEEEEEECHHHHH
T ss_pred             -CCCEEEEEcCChH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence             4899999999974 44 459999999999999999988764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.84  E-value=1.1e-20  Score=201.06  Aligned_cols=113  Identities=26%  Similarity=0.375  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHcCCcccc-------cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQACA-------ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~-------~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      +++++++++..|+.+..       ||.+|. ....||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|++
T Consensus       447 ~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~  525 (582)
T 3b5x_A          447 REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE  525 (582)
T ss_pred             HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            45688889988887654       455553 4568999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +++ |+|+|+++|+++ .+ +.+|++++|++|+++..|+.+++.
T Consensus       526 ~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~  566 (582)
T 3b5x_A          526 LQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHADLL  566 (582)
T ss_pred             HcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence            865 899999999985 34 579999999999999999998775

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.83  E-value=3.6e-20  Score=197.12  Aligned_cols=113  Identities=26%  Similarity=0.372  Sum_probs=95.2

Q ss_pred             HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         8 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +.+.+.++..++.+       -.||.+|. ....||||||||++|||+|+.+|++|+|||||++||+.+..++.+.|+++
T Consensus       447 ~~~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~  525 (587)
T 3qf4_A          447 DEIVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY  525 (587)
T ss_dssp             HHHHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHh
Confidence            34455555555543       34566654 55689999999999999999999999999999999999999999999998


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      . +|+|+|+++|+++.  ...+|++++|++|+++..|+.+++.+
T Consensus       526 ~-~~~tvi~itH~l~~--~~~~d~i~vl~~G~i~~~g~~~el~~  566 (587)
T 3qf4_A          526 T-KGCTTFIITQKIPT--ALLADKILVLHEGKVAGFGTHKELLE  566 (587)
T ss_dssp             S-TTCEEEEEESCHHH--HTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred             C-CCCEEEEEecChHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence            5 58999999999753  46899999999999999999998764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.82  E-value=5e-20  Score=195.76  Aligned_cols=113  Identities=27%  Similarity=0.403  Sum_probs=96.3

Q ss_pred             HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         8 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +.+.+.++..++.+       -.||.+|. ....||||||||++|||+|+.+|++++|||||+|||+.+...+.+.++++
T Consensus       445 ~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~  523 (578)
T 4a82_A          445 EEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL  523 (578)
T ss_dssp             HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence            45666777776654       34566653 45689999999999999999999999999999999999999999999998


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      . +|+|+|+++|+++. + +.+|++++|++|+++..|+++++.+
T Consensus       524 ~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~el~~  564 (578)
T 4a82_A          524 S-KDRTTLIVAHRLST-I-THADKIVVIENGHIVETGTHRELIA  564 (578)
T ss_dssp             T-TTSEEEEECSSGGG-T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             c-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence            5 47899999999864 4 5699999999999999999998754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.82  E-value=2.3e-20  Score=198.32  Aligned_cols=111  Identities=16%  Similarity=0.310  Sum_probs=100.9

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI   86 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~t   86 (437)
                      +.++++++.+||.+.++..+     ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|
T Consensus       446 ~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~t  520 (608)
T 3j16_B          446 QFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKT  520 (608)
T ss_dssp             HHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCE
Confidence            46788999999998777665     46999999999999999999999999999999999999999999999975 6999


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeC--CeEEEeeChhHHHH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSN--GETIYFGDAKMAVK  124 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~--G~~v~~G~~~~~~~  124 (437)
                      ||+++|+. .++..++||+++|++  |+++..|+++++..
T Consensus       521 viivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~  559 (608)
T 3j16_B          521 AFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLT  559 (608)
T ss_dssp             EEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred             EEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence            99999996 578899999999986  99999999987764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.82  E-value=5.2e-21  Score=178.04  Aligned_cols=96  Identities=18%  Similarity=0.296  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      +++++++++.+||++. +..+     ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|
T Consensus       112 ~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~t  185 (214)
T 1sgw_A          112 KNEIMDALESVEVLDL-KKKL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI  185 (214)
T ss_dssp             HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSE
T ss_pred             HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCE
Confidence            4678999999999876 5544     579999999999999999999999999999999999999999999999877899


Q ss_pred             EEEEecCCchHHHhhcCeEEEEe
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLS  109 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~  109 (437)
                      ||+++|++. ++..++|++++++
T Consensus       186 iiivtHd~~-~~~~~~d~v~~~~  207 (214)
T 1sgw_A          186 VIISSREEL-SYCDVNENLHKYS  207 (214)
T ss_dssp             EEEEESSCC-TTSSEEEEGGGGB
T ss_pred             EEEEeCCHH-HHHHhCCEEEEeC
Confidence            999999985 5777788877553

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.81  E-value=4.2e-20  Score=197.04  Aligned_cols=112  Identities=21%  Similarity=0.336  Sum_probs=94.4

Q ss_pred             HHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            9 IVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         9 ~v~~~l~~l~L~~~-------~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      .+++.++..++.+.       .||.+|. ....||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++.
T Consensus       460 ~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~  538 (598)
T 3qf4_B          460 EIKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM  538 (598)
T ss_dssp             HHHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc
Confidence            45566666666543       3444442 346799999999999999999999999999999999999999999999986


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                       +|+|+|+++|+++ .+ ..+|++++|++|+++..|+.+++.+
T Consensus       539 -~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~  578 (598)
T 3qf4_B          539 -EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHDELIQ  578 (598)
T ss_dssp             -TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred             -CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence             5899999999986 34 4599999999999999999998754

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.81  E-value=6.4e-20  Score=178.35  Aligned_cols=110  Identities=18%  Similarity=0.263  Sum_probs=88.4

Q ss_pred             HHHHHHHcCCccccc-------ccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHH
Q 013741           10 VEETIIKMGLQACAE-------TKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQV-LKCIA   81 (437)
Q Consensus        10 v~~~l~~l~L~~~~~-------~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~-l~~l~   81 (437)
                      +++.++.+++.+..+       +.++ ..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+. +++++
T Consensus       129 ~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~  207 (290)
T 2bbs_A          129 YRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM  207 (290)
T ss_dssp             HHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT
T ss_pred             HHHHHHHhChHHHHHhccccccchhc-CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh
Confidence            455666667654432       2222 23568999999999999999999999999999999999999999997 45554


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                       +|+|||+++|++. .+ ..+|++++|++|+++..|+++++.
T Consensus       208 -~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~  246 (290)
T 2bbs_A          208 -ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ  246 (290)
T ss_dssp             -TTSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred             -CCCEEEEEecCHH-HH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence             4899999999974 44 569999999999999999998764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.81  E-value=9.7e-20  Score=193.80  Aligned_cols=111  Identities=19%  Similarity=0.279  Sum_probs=100.8

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI   86 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~t   86 (437)
                      ++++++++.+||.+.++..++     .|||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++++ .|.|
T Consensus       450 ~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~t  524 (607)
T 3bk7_A          450 FYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT  524 (607)
T ss_dssp             HHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence            568899999999887777664     6999999999999999999999999999999999999999999999975 6899


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeC--CeEEEeeChhHHHH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSN--GETIYFGDAKMAVK  124 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~--G~~v~~G~~~~~~~  124 (437)
                      ||+++|++ ..+..++||+++|++  |+++..|+++++.+
T Consensus       525 vi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~  563 (607)
T 3bk7_A          525 ALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE  563 (607)
T ss_dssp             EEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             EEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence            99999996 478889999999986  88889999987754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.81  E-value=7e-20  Score=192.69  Aligned_cols=111  Identities=19%  Similarity=0.278  Sum_probs=100.2

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI   86 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~t   86 (437)
                      ++++++++.+|+.+..+..++     .|||||||||.||++|+.+|++|+|||||+|||..++..+.+.|+++++ .|.|
T Consensus       380 ~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~t  454 (538)
T 1yqt_A          380 FYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT  454 (538)
T ss_dssp             HHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE
Confidence            467889999999877776664     6999999999999999999999999999999999999999999999975 6999


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeC--CeEEEeeChhHHHH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSN--GETIYFGDAKMAVK  124 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~--G~~v~~G~~~~~~~  124 (437)
                      ||+++|++ .++..+|||+++|++  |+++..|+++++.+
T Consensus       455 vi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~  493 (538)
T 1yqt_A          455 ALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE  493 (538)
T ss_dssp             EEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred             EEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence            99999996 578899999999985  88999999987654

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.80  E-value=2.6e-19  Score=193.40  Aligned_cols=109  Identities=24%  Similarity=0.338  Sum_probs=95.2

Q ss_pred             HHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            8 DIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         8 ~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p---~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      +++.+.++.+||.+ ..+.     .+..|||||||||+||++|+.+|   ++|+|||||+|||+.++.++++.|++++++
T Consensus       521 ~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~  595 (670)
T 3ux8_A          521 KRKLETLYDVGLGYMKLGQ-----PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN  595 (670)
T ss_dssp             HHHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCchhhccC-----CchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence            45677888899864 2333     44579999999999999999987   499999999999999999999999999988


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV  123 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~  123 (437)
                      |.|||+++|++. . ...+|++++|      ++|++++.|+++++.
T Consensus       596 g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~  639 (670)
T 3ux8_A          596 GDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA  639 (670)
T ss_dssp             TCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred             CCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence            999999999975 3 4679999999      899999999999874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.79  E-value=2.6e-19  Score=188.14  Aligned_cols=109  Identities=19%  Similarity=0.293  Sum_probs=96.1

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI   86 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~t   86 (437)
                      +.++++++.+||.+..+..++     .|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++ .|.|
T Consensus       364 ~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~t  438 (538)
T 3ozx_A          364 WFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAV  438 (538)
T ss_dssp             HHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence            457889999999887776654     6999999999999999999999999999999999999999999999986 6899


Q ss_pred             EEEEecCCchHHHhhcCeEEEEeC--CeEEEeeChhHH
Q 013741           87 VVCSIHQPSSHLFYLFDDLLLLSN--GETIYFGDAKMA  122 (437)
Q Consensus        87 vi~t~hqp~~~i~~~fd~v~~L~~--G~~v~~G~~~~~  122 (437)
                      ||+++|++ .++..+|||+++|++  |.....|++.+.
T Consensus       439 vi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~  475 (538)
T 3ozx_A          439 TFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTL  475 (538)
T ss_dssp             EEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred             EEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence            99999996 478899999999985  666667766544

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.79  E-value=2.9e-19  Score=193.08  Aligned_cols=104  Identities=23%  Similarity=0.342  Sum_probs=92.9

Q ss_pred             HHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Q 013741           13 TIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQPT--VLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVC   89 (437)
Q Consensus        13 ~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~--ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~   89 (437)
                      +++.+||.+. .|..+     ..|||||||||+||++|+.+|+  +|+|||||+|||+.++..+++.|++++++|.|||+
T Consensus       185 ~l~~~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~  259 (670)
T 3ux8_A          185 FLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV  259 (670)
T ss_dssp             HHHHTTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHcCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence            5888888764 45555     4699999999999999999998  99999999999999999999999999988999999


Q ss_pred             EecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHH
Q 013741           90 SIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV  123 (437)
Q Consensus        90 t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~  123 (437)
                      ++|++. . ...+|++++|      ++|++++.|+++++.
T Consensus       260 vtHd~~-~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~  297 (670)
T 3ux8_A          260 VEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM  297 (670)
T ss_dssp             ECCCHH-H-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred             EeCCHH-H-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence            999975 3 4569999999      899999999998764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.79  E-value=2.7e-19  Score=190.43  Aligned_cols=99  Identities=25%  Similarity=0.400  Sum_probs=90.9

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      ++++++++.+||++..|..++     .|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++++|.||
T Consensus       207 ~~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tv  281 (607)
T 3bk7_A          207 GKFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV  281 (607)
T ss_dssp             SCHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHcCCCchhCCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence            468899999999988887665     699999999999999999999999999999999999999999999998889999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCe
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~G~  112 (437)
                      |+++|++. .+..++|++++|++|.
T Consensus       282 IivsHdl~-~~~~~adri~vl~~~~  305 (607)
T 3bk7_A          282 LVVEHDLA-VLDYLSDVIHVVYGEP  305 (607)
T ss_dssp             EEECSCHH-HHHHHCSEEEEEESCT
T ss_pred             EEEecChH-HHHhhCCEEEEECCCc
Confidence            99999964 6888999999998654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.78  E-value=2.2e-19  Score=188.93  Aligned_cols=99  Identities=25%  Similarity=0.383  Sum_probs=90.6

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      ++++++++.+||.+..+..++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.||
T Consensus       137 ~~~~~~l~~lgl~~~~~~~~~-----~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tv  211 (538)
T 1yqt_A          137 GKLEEVVKALELENVLEREIQ-----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSV  211 (538)
T ss_dssp             SCHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHcCCChhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence            468899999999887777664     699999999999999999999999999999999999999999999998889999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCe
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~G~  112 (437)
                      |+++|+. .++..++|++++|++|.
T Consensus       212 i~vsHd~-~~~~~~~dri~vl~~~~  235 (538)
T 1yqt_A          212 LVVEHDL-AVLDYLSDIIHVVYGEP  235 (538)
T ss_dssp             EEECSCH-HHHHHHCSEEEEEEEET
T ss_pred             EEEeCCH-HHHHHhCCEEEEEcCcc
Confidence            9999996 47889999999998653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.78  E-value=4e-19  Score=188.91  Aligned_cols=103  Identities=25%  Similarity=0.391  Sum_probs=95.0

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      ++++++++.+||.+..|+.++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.||
T Consensus       200 ~~~~~~l~~~gl~~~~~~~~~-----~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tv  274 (608)
T 3j16_B          200 EDVKRYIKILQLENVLKRDIE-----KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYV  274 (608)
T ss_dssp             HHHHHHHHHHTCTGGGGSCTT-----TCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEE
T ss_pred             HHHHHHHHHcCCcchhCCChH-----HCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence            678999999999988887765     699999999999999999999999999999999999999999999999889999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEEEe
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSNGETIYF  116 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~~  116 (437)
                      |+++|+. .++..++|++++|++|..+|.
T Consensus       275 i~vtHdl-~~~~~~~drv~vl~~~~~~~~  302 (608)
T 3j16_B          275 ICVEHDL-SVLDYLSDFVCIIYGVPSVYG  302 (608)
T ss_dssp             EEECSCH-HHHHHHCSEEEEEESCTTTEE
T ss_pred             EEEeCCH-HHHHHhCCEEEEEeCCccccc
Confidence            9999996 578999999999998776553

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.78  E-value=8.4e-19  Score=153.67  Aligned_cols=82  Identities=26%  Similarity=0.316  Sum_probs=73.5

Q ss_pred             CcccCCCCHHHHHHHHHH------HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741           29 NWHLRGISSGEKKRLSIS------IEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF  102 (437)
Q Consensus        29 ~~~~~~lSgGerkRv~ia------~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~f  102 (437)
                      +..++.||||||||++||      ++|+.+|++++|||||+|||+.++..+.+.|+++.++|.|||+++|++  ++.+.+
T Consensus        52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~  129 (148)
T 1f2t_B           52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA  129 (148)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred             cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhC
Confidence            345678999999999886      889999999999999999999999999999999988899999999997  467899


Q ss_pred             CeEEEEe--CCe
Q 013741          103 DDLLLLS--NGE  112 (437)
Q Consensus       103 d~v~~L~--~G~  112 (437)
                      |++++|+  +|.
T Consensus       130 d~ii~l~~~~g~  141 (148)
T 1f2t_B          130 DHVIRISLENGS  141 (148)
T ss_dssp             SEEEEEEEETTE
T ss_pred             CEEEEEEcCCCe
Confidence            9999994  554

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.77  E-value=1.4e-18  Score=191.62  Aligned_cols=109  Identities=23%  Similarity=0.382  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~-~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      +++++++++.+||. +..+..++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++   .|.
T Consensus       525 ~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~  596 (986)
T 2iw3_A          525 KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGI  596 (986)
T ss_dssp             HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCS
T ss_pred             HHHHHHHHHHcCCChhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCC
Confidence            46789999999994 66777665     5999999999999999999999999999999999999999999998   589


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEE-EeeChhHHHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKMAVK  124 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v-~~G~~~~~~~  124 (437)
                      |+|+++|++ ..+.+++|++++|++|+++ +.|+.++..+
T Consensus       597 tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~~~  635 (986)
T 2iw3_A          597 TSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEFVK  635 (986)
T ss_dssp             EEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred             EEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence            999999996 5788999999999999997 7899887653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.77  E-value=3.2e-19  Score=187.38  Aligned_cols=101  Identities=19%  Similarity=0.283  Sum_probs=91.6

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      ++++++++.+|+.+..|+.++     .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |.||
T Consensus       117 ~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~ti  190 (538)
T 3ozx_A          117 GKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYV  190 (538)
T ss_dssp             SCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEE
T ss_pred             HHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEE
Confidence            367899999999988887665     6999999999999999999999999999999999999999999999976 8999


Q ss_pred             EEEecCCchHHHhhcCeEEEEeCCeEEE
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSNGETIY  115 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~G~~v~  115 (437)
                      |+++|+. .++..++|++++|++|..+|
T Consensus       191 i~vsHdl-~~~~~~~d~i~vl~~~~~~~  217 (538)
T 3ozx_A          191 IVVDHDL-IVLDYLTDLIHIIYGESSVY  217 (538)
T ss_dssp             EEECSCH-HHHHHHCSEEEEEEEETTTE
T ss_pred             EEEEeCh-HHHHhhCCEEEEecCCcccc
Confidence            9999997 57899999999998765443

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.77  E-value=1.8e-18  Score=190.40  Aligned_cols=110  Identities=23%  Similarity=0.324  Sum_probs=96.1

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p---~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +++.++|+.+||....   .| ..+..|||||||||.||++|+.+|   ++|+|||||+|||+.+...+++.|++++++|
T Consensus       783 ~~~~~~L~~vGL~~~~---lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G  858 (916)
T 3pih_A          783 KRTLQVLHDVGLGYVK---LG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG  858 (916)
T ss_dssp             HHHHHHHHHTTGGGSB---TT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCchhh---cc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC
Confidence            5677899999997532   22 244579999999999999999876   7999999999999999999999999999899


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHH
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV  123 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~  123 (437)
                      .|||+++|++. . ...+|+|++|      ++|++++.|+++++.
T Consensus       859 ~TVIvI~HdL~-~-i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~  901 (916)
T 3pih_A          859 NTVIVIEHNLD-V-IKNADHIIDLGPEGGKEGGYIVATGTPEEIA  901 (916)
T ss_dssp             CEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred             CEEEEEeCCHH-H-HHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence            99999999974 4 4569999999      899999999999875

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.76  E-value=9.1e-19  Score=201.50  Aligned_cols=114  Identities=29%  Similarity=0.409  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQ-------ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         7 ~~~v~~~l~~l~L~-------~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      ++.+.++++..++.       +-.||.+|+ ....||||||||++|||+|+++|+||+||||||+||+.+...|.+.|++
T Consensus      1184 d~ei~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A         1184 MAQVEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp             HHHHHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            35677777777764       346888885 4457999999999999999999999999999999999999999999987


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      +. +|+|+|+++|.++.  ...+|+|++|++|+++..|+++++.+
T Consensus      1263 ~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A         1263 AR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp             TS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred             Hc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence            54 57999999999864  45699999999999999999998875

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.76  E-value=2.6e-18  Score=187.72  Aligned_cols=110  Identities=24%  Similarity=0.263  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            7 NDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQ---PTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~---p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      .++++++++.+||... .+..     +..|||||||||.||++|+.+   |++|+|||||+|||..+..++.+.|+++++
T Consensus       707 ~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~  781 (842)
T 2vf7_A          707 IFRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD  781 (842)
T ss_dssp             HHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence            3578899999999863 3444     457999999999999999996   799999999999999999999999999999


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHH
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~  123 (437)
                      +|.|||+++|++. ++ ..+|++++|      ++|++++.|+++++.
T Consensus       782 ~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~  826 (842)
T 2vf7_A          782 AGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA  826 (842)
T ss_dssp             TTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred             CCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence            9999999999964 55 889999999      699999999998763

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.75  E-value=4.7e-18  Score=186.28  Aligned_cols=109  Identities=24%  Similarity=0.341  Sum_probs=96.3

Q ss_pred             HHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            8 DIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         8 ~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p---~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      +++.++++.+||.. ..+..+     ..|||||||||.||++|+.+|   ++|+|||||+|||+.++..+++.|++++++
T Consensus       823 ~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~  897 (972)
T 2r6f_A          823 KRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN  897 (972)
T ss_dssp             HHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence            35678999999986 455544     469999999999999999865   999999999999999999999999999989


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV  123 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~  123 (437)
                      |.|||+++|++. . ...+|++++|      ++|++++.|+++++.
T Consensus       898 G~TVIvisHdl~-~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~  941 (972)
T 2r6f_A          898 GDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA  941 (972)
T ss_dssp             TCEEEEECCCHH-H-HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred             CCEEEEEcCCHH-H-HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence            999999999964 4 4689999999      689999999998764

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.75  E-value=4.8e-18  Score=187.09  Aligned_cols=108  Identities=23%  Similarity=0.343  Sum_probs=94.8

Q ss_pred             HHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 013741            9 IVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQPT--VLLLDEPTSGLDSASAFFVIQVLKCIALDGR   85 (437)
Q Consensus         9 ~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~--ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~   85 (437)
                      +..+.++.+||.+. .|..+     ..|||||||||.||++|+.+|+  +|+|||||+|||+.....+++.|++++++|.
T Consensus       443 ~~~~~L~~vgL~~l~l~r~~-----~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~  517 (916)
T 3pih_A          443 KRLEFLVDVGLEYLTLSRSA-----TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGN  517 (916)
T ss_dssp             HHHHHHHTTTCTTCBTTSBG-----GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTC
T ss_pred             HHHHHHHHcCCccccccCCc-----ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCC
Confidence            34567888999754 45544     4699999999999999999887  9999999999999999999999999998999


Q ss_pred             EEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV  123 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~~  123 (437)
                      |||+++|++. . ...+|++++|      ++|++++.|+++++.
T Consensus       518 TvivVtHd~~-~-~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~  559 (916)
T 3pih_A          518 TVIVVEHDEE-V-IRNADHIIDIGPGGGTNGGRVVFQGTVDELL  559 (916)
T ss_dssp             EEEEECCCHH-H-HHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred             EEEEEeCCHH-H-HHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence            9999999963 3 4569999999      899999999998764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.74  E-value=3.3e-18  Score=196.83  Aligned_cols=114  Identities=27%  Similarity=0.367  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741            7 NDIVEETIIKMGLQ-------ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus         7 ~~~v~~~l~~l~L~-------~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      ++++.++++..++.       +-.||.||+ ....||||||||++|||++++||+||+||||||+||+.+...+.+.|++
T Consensus       521 ~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe-~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~  599 (1321)
T 4f4c_A          521 REEMVAACKMANAEKFIKTLPNGYNTLVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK  599 (1321)
T ss_dssp             HHHHHHHHHHTTCHHHHHHSTTTTSSEESS-SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHccchhHHHcCCCCCccEecC-CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence            35566777666543       446788886 3457999999999999999999999999999999999999999999998


Q ss_pred             HHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        80 l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      +. +|+|+|+++|+++  ..+.+|+|++|++|+++..|+.+++.+
T Consensus       600 ~~-~~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~~  641 (1321)
T 4f4c_A          600 AA-KGRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALMA  641 (1321)
T ss_dssp             HH-TTSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred             Hh-CCCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence            76 4799999999986  467799999999999999999998763

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.74  E-value=5.1e-18  Score=186.02  Aligned_cols=110  Identities=25%  Similarity=0.368  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            5 EINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p--~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      |..+++ +.++.+||... .|..++     .|||||||||.||++|..+|  ++|+|||||+|||+.....+.+.|++|+
T Consensus       480 ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr  553 (972)
T 2r6f_A          480 EIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR  553 (972)
T ss_dssp             HHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred             HHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHH
Confidence            455666 45899999854 565554     69999999999999999985  9999999999999999999999999999


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHH
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMA  122 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~  122 (437)
                      +.|.|||+++|++. . ...+|+|++|      ++|++++.|++++.
T Consensus       554 ~~G~TVIvVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~  598 (972)
T 2r6f_A          554 DLGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEV  598 (972)
T ss_dssp             TTTCEEEEECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTT
T ss_pred             hCCCEEEEEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHH
Confidence            89999999999963 4 4679999999      79999999998765

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.74  E-value=8.8e-18  Score=192.86  Aligned_cols=100  Identities=29%  Similarity=0.447  Sum_probs=88.9

Q ss_pred             ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHh
Q 013741           21 ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFY  100 (437)
Q Consensus        21 ~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~  100 (437)
                      +-.||.+|+ ....||||||||++|||+|+++|+||+|||||+|||+.+...+.+.|++. .+|+|+|+++|+++. + .
T Consensus      1159 ~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~ 1234 (1284)
T 3g5u_A         1159 DKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-Q 1234 (1284)
T ss_dssp             TGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-G
T ss_pred             cccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-H
Confidence            445677774 45679999999999999999999999999999999999999999999885 468999999999864 5 5


Q ss_pred             hcCeEEEEeCCeEEEeeChhHHHH
Q 013741          101 LFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus       101 ~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      .+||+++|++|+++..|+++++.+
T Consensus      1235 ~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A         1235 NADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp             SCSEEEEEETBEEEEEECHHHHHH
T ss_pred             cCCEEEEEECCEEEEECCHHHHHh
Confidence            599999999999999999998764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.73  E-value=4.4e-18  Score=170.81  Aligned_cols=84  Identities=26%  Similarity=0.370  Sum_probs=77.2

Q ss_pred             cccCCCCHHHHHHHHHHHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcC
Q 013741           30 WHLRGISSGEKKRLSISIEIL------TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFD  103 (437)
Q Consensus        30 ~~~~~lSgGerkRv~ia~~l~------~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd  103 (437)
                      ..+..|||||||||+||++|+      .+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++.  ....+|
T Consensus       275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d  352 (365)
T 3qf7_A          275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFD  352 (365)
T ss_dssp             EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCS
T ss_pred             CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCC
Confidence            356689999999999999999      799999999999999999999999999999888999999999974  477899


Q ss_pred             eEEEEeCCeEEE
Q 013741          104 DLLLLSNGETIY  115 (437)
Q Consensus       104 ~v~~L~~G~~v~  115 (437)
                      ++++|++|+++.
T Consensus       353 ~~~~l~~G~i~~  364 (365)
T 3qf7_A          353 RKLRITGGVVVN  364 (365)
T ss_dssp             CEEEEETTEEC-
T ss_pred             EEEEEECCEEEe
Confidence            999999999864

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.73  E-value=9.7e-18  Score=192.52  Aligned_cols=100  Identities=27%  Similarity=0.385  Sum_probs=88.1

Q ss_pred             ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHh
Q 013741           21 ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFY  100 (437)
Q Consensus        21 ~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~  100 (437)
                      +-.||.+|. ....||||||||++|||+|+.+|+||+||||||+||+.+...+.+.++++. +|+|+|+++|+++ .+ .
T Consensus       514 ~g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~i-~  589 (1284)
T 3g5u_A          514 HQFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS-TV-R  589 (1284)
T ss_dssp             TGGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH-HH-T
T ss_pred             ccccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-H
Confidence            345677764 456799999999999999999999999999999999999999999998865 5899999999975 45 4


Q ss_pred             hcCeEEEEeCCeEEEeeChhHHHH
Q 013741          101 LFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus       101 ~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      .+|++++|++|++++.|+.++..+
T Consensus       590 ~~d~i~vl~~G~i~~~g~~~~l~~  613 (1284)
T 3g5u_A          590 NADVIAGFDGGVIVEQGNHDELMR  613 (1284)
T ss_dssp             TCSEEEECSSSCCCCEECHHHHHH
T ss_pred             cCCEEEEEECCEEEEECCHHHHHh
Confidence            599999999999999999998754

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.72  E-value=1.6e-17  Score=181.47  Aligned_cols=110  Identities=22%  Similarity=0.378  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            5 EINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p--~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      |..++++ .++.+||.+. .+..+     ..|||||||||.||++|..+|  ++|+|||||+|||+.....+.+.|++|+
T Consensus       355 ei~~rl~-~L~~vGL~~l~l~r~~-----~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~  428 (842)
T 2vf7_A          355 DLVKRLD-VLLHLGLGYLGLDRST-----PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK  428 (842)
T ss_dssp             HHHHHHH-HHHHTTCTTSBTTCBG-----GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHhCCCCcCCccCCc-----CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH
Confidence            4556776 6889999864 55555     469999999999999999999  4999999999999999999999999999


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEE------eCCeEEEeeChhHH
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMA  122 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L------~~G~~v~~G~~~~~  122 (437)
                      +.|.|||+++|++.  +.+.+|+|++|      .+|++++.|++++.
T Consensus       429 ~~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~  473 (842)
T 2vf7_A          429 RGGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGL  473 (842)
T ss_dssp             TTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGG
T ss_pred             HcCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHH
Confidence            89999999999973  56789999999      79999999998765

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.70  E-value=9.4e-18  Score=185.13  Aligned_cols=103  Identities=26%  Similarity=0.385  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHcCCcc-c-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741            7 NDIVEETIIKMGLQA-C-AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~-~-~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +++++++++.+||.+ . .+..+     ++|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++   |
T Consensus       877 ~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g  948 (986)
T 2iw3_A          877 RKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---E  948 (986)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---S
T ss_pred             HHHHHHHHHHcCCCchhhcCCCc-----cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---C
Confidence            357889999999975 2 45544     469999999999999999999999999999999999999999988765   5


Q ss_pred             CEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeC
Q 013741           85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD  118 (437)
Q Consensus        85 ~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~  118 (437)
                      .|||+++|++ ..+.++||++++|.+|+++..|+
T Consensus       949 ~tVIiISHD~-e~v~~l~DrVivL~~G~Iv~~G~  981 (986)
T 2iw3_A          949 GGVIIITHSA-EFTKNLTEEVWAVKDGRMTPSGH  981 (986)
T ss_dssp             SEEEEECSCH-HHHTTTCCEEECCBTTBCCC---
T ss_pred             CEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence            7999999996 46778999999999999988774

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.68  E-value=2e-16  Score=160.99  Aligned_cols=80  Identities=23%  Similarity=0.319  Sum_probs=74.5

Q ss_pred             CCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE----
Q 013741           35 ISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL----  108 (437)
Q Consensus        35 lSgGerkRv~ia~~l~~~p--~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L----  108 (437)
                      +|||||||+.||++|+.+|  ++|+|||||+|||+.++..+.+.|++++ +|.|||+++|+|  ++...+|++++|    
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d~i~~l~k~~  372 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAHHHYKVEKQV  372 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSEEEEEEEEE
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcCeEEEEEEec
Confidence            6999999999999999999  9999999999999999999999999998 689999999997  456889999999    


Q ss_pred             eCCeEEEee
Q 013741          109 SNGETIYFG  117 (437)
Q Consensus       109 ~~G~~v~~G  117 (437)
                      .+|+++...
T Consensus       373 ~~G~~~~~~  381 (415)
T 4aby_A          373 EDGRTVSHV  381 (415)
T ss_dssp             ETTEEEEEE
T ss_pred             cCCceEEEE
Confidence            899987654

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.56  E-value=2.5e-14  Score=128.36  Aligned_cols=90  Identities=19%  Similarity=0.224  Sum_probs=72.4

Q ss_pred             cCCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEE
Q 013741           32 LRGISSGEKKRLSISIEILT----QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLL  107 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l~~----~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~  107 (437)
                      +..||||||||++||++++.    +|++++|||||+|||+.+...+.+.|++++++ .++|+++|++  .+...+|+++.
T Consensus        62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-~~~ivith~~--~~~~~ad~i~~  138 (173)
T 3kta_B           62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-SQFIVITLRD--VMMANADKIIG  138 (173)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCH--HHHTTCSEEEE
T ss_pred             cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-CEEEEEEecH--HHHHhCCEEEE
Confidence            46799999999999999975    46999999999999999999999999998754 6788888985  46789999997


Q ss_pred             Ee--CCeE-EEeeChhHHHH
Q 013741          108 LS--NGET-IYFGDAKMAVK  124 (437)
Q Consensus       108 L~--~G~~-v~~G~~~~~~~  124 (437)
                      +.  +|.. +...+.++..+
T Consensus       139 v~~~~g~s~~~~~~~~~~~~  158 (173)
T 3kta_B          139 VSMRDGVSKVVSLSLEKAMK  158 (173)
T ss_dssp             EEEETTEEEEEECCHHHHHH
T ss_pred             EEecCCEEEEEEEEcHHHHH
Confidence            75  5543 23344444433

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.55  E-value=8.3e-15  Score=145.46  Aligned_cols=77  Identities=27%  Similarity=0.323  Sum_probs=69.9

Q ss_pred             ccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCe
Q 013741           31 HLRGISSGEKK------RLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDD  104 (437)
Q Consensus        31 ~~~~lSgGerk------Rv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~  104 (437)
                      .++.|||||||      |+++|++++.+|++|+|||||+|||+..+..+.+.|+++.++|.+||+++|++  ++.+.+|+
T Consensus       245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~  322 (339)
T 3qkt_A          245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH  322 (339)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred             ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence            45689999999      56777888889999999999999999999999999999988889999999995  47889999


Q ss_pred             EEEEe
Q 013741          105 LLLLS  109 (437)
Q Consensus       105 v~~L~  109 (437)
                      ++.|.
T Consensus       323 ~~~l~  327 (339)
T 3qkt_A          323 VIRIS  327 (339)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.55  E-value=6.3e-15  Score=154.46  Aligned_cols=77  Identities=21%  Similarity=0.281  Sum_probs=71.0

Q ss_pred             cCCC-CHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 013741           32 LRGI-SSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL  108 (437)
Q Consensus        32 ~~~l-SgGerkRv~ia~~l~~~p--~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L  108 (437)
                      +..| ||||||||+||++|+.+|  ++|+|||||+|||..++..+.+.|+++++ |.|||+++|+|.  +...+|++++|
T Consensus       394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~  470 (517)
T 4ad8_A          394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKV  470 (517)
T ss_dssp             SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEE
T ss_pred             HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEE
Confidence            4567 999999999999999999  99999999999999999999999999987 899999999974  45679999999


Q ss_pred             eCC
Q 013741          109 SNG  111 (437)
Q Consensus       109 ~~G  111 (437)
                      ++|
T Consensus       471 ~~~  473 (517)
T 4ad8_A          471 EKQ  473 (517)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            765

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.55  E-value=4.1e-15  Score=148.45  Aligned_cols=87  Identities=20%  Similarity=0.278  Sum_probs=77.1

Q ss_pred             cCcccC-CCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Q 013741           28 GNWHLR-GISSGEKKRLSISIEIL---------TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH   97 (437)
Q Consensus        28 g~~~~~-~lSgGerkRv~ia~~l~---------~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~   97 (437)
                      ++..++ .+|||||||++||++|+         .+|+||+|||||++||+..+..+++.|+++.   .|+|+++| +.. 
T Consensus       258 ~~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th-~~~-  332 (359)
T 2o5v_A          258 GDFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE-LAP-  332 (359)
T ss_dssp             TTEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS-CCT-
T ss_pred             CCcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe-ccc-
Confidence            344566 79999999999999999         8999999999999999999999999998864   68888888 432 


Q ss_pred             HHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           98 LFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        98 i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                         .+|+++++++|+++..|+++++
T Consensus       333 ---~~~~i~~l~~G~i~~~g~~~~~  354 (359)
T 2o5v_A          333 ---GAALTLRAQAGRFTPVADEEMQ  354 (359)
T ss_dssp             ---TCSEEEEEETTEEEECCCTTTS
T ss_pred             ---cCCEEEEEECCEEEecCCHHHH
Confidence               7999999999999999998754

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.54  E-value=1.7e-14  Score=142.28  Aligned_cols=88  Identities=23%  Similarity=0.217  Sum_probs=72.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeE-
Q 013741           31 HLRGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDL-  105 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v-  105 (437)
                      .+..||||||||++||++|+    .+|++++|||||++||+..+..+.+.|++++ +|.++|+++|++  ++.+.+|++ 
T Consensus       216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~  292 (322)
T 1e69_A          216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLH  292 (322)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEE
T ss_pred             chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEE
Confidence            34679999999999999997    5889999999999999999999999999985 578999999996  367889986 


Q ss_pred             -EEEeCCeE-EEeeChhH
Q 013741          106 -LLLSNGET-IYFGDAKM  121 (437)
Q Consensus       106 -~~L~~G~~-v~~G~~~~  121 (437)
                       +++.+|+. +.....++
T Consensus       293 ~v~~~~g~s~~~~~~~~~  310 (322)
T 1e69_A          293 GVTMVNGVSAIVPVEVEK  310 (322)
T ss_dssp             EEEESSSCEEEEECCC--
T ss_pred             EEEEeCCEEEEEEEEcch
Confidence             77777654 44444444

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.47  E-value=1.5e-13  Score=138.00  Aligned_cols=100  Identities=17%  Similarity=0.263  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHcCCccc-------ccccccC----cccCCCCHHHHHHH------HHHHHHHhC-CCEEEEeCCCCCCCHH
Q 013741            7 NDIVEETIIKMGLQAC-------AETKIGN----WHLRGISSGEKKRL------SISIEILTQ-PTVLLLDEPTSGLDSA   68 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~-------~~~~vg~----~~~~~lSgGerkRv------~ia~~l~~~-p~ll~lDEPtsgLD~~   68 (437)
                      .+.+++.++.+++.+.       .+..+.+    ..++.+|||||||+      ++|+++..+ |++++|||||+|||+.
T Consensus       242 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~  321 (371)
T 3auy_A          242 QKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDEN  321 (371)
T ss_dssp             HHHHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHH
T ss_pred             HHHHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHH
Confidence            3456778888887651       1111111    34567999999988      557888889 9999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741           69 SAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS  109 (437)
Q Consensus        69 ~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~  109 (437)
                      .+..+.+.|+++++ +.+||+++|+|.  +...+|++++++
T Consensus       322 ~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~d~~~~l~  359 (371)
T 3auy_A          322 RRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVADVIINVK  359 (371)
T ss_dssp             HHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGCSEEEEEE
T ss_pred             HHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhCCEEEEEE
Confidence            99999999998753 468999999974  578899999997

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.46  E-value=2.7e-15  Score=154.55  Aligned_cols=102  Identities=11%  Similarity=0.086  Sum_probs=81.6

Q ss_pred             HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHH--HHhCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHH
Q 013741            9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIE--ILTQPTV----LLLDE-PTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         9 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~--l~~~p~l----l~lDE-PtsgLD~~~~~~i~~~l~~l~   81 (437)
                      +++++++.+||.+..+       ++.|||||||||++|++  |+.+|++    |+||| ||+|||+. ...+.+.+++  
T Consensus       217 ~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~--  286 (460)
T 2npi_A          217 NKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK--  286 (460)
T ss_dssp             CBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH--
T ss_pred             HHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH--
Confidence            3445666677766554       35799999999999999  9999999    99999 99999998 4444444443  


Q ss_pred             hcCCEEEEEecCCch-----HHHhhcCe-----EEEEe-CCeEEEeeChhHH
Q 013741           82 LDGRIVVCSIHQPSS-----HLFYLFDD-----LLLLS-NGETIYFGDAKMA  122 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~-----~i~~~fd~-----v~~L~-~G~~v~~G~~~~~  122 (437)
                       .|.|+|+++|+...     ++.+++|+     +++|+ +|+++ .|++++.
T Consensus       287 -~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~  336 (460)
T 2npi_A          287 -LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK  336 (460)
T ss_dssp             -TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred             -hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence             47899999999761     55688999     99999 99999 9988655

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.40  E-value=3.2e-13  Score=121.75  Aligned_cols=78  Identities=14%  Similarity=0.011  Sum_probs=65.8

Q ss_pred             ccCCCCHHHHHHHHHHHH-----HHhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec--CCchHHHhh
Q 013741           31 HLRGISSGEKKRLSISIE-----ILTQPTVLLLDE--PTSGLDSASAFFVIQVLKCIALDGRIVVCSIH--QPSSHLFYL  101 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~-----l~~~p~ll~lDE--PtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~h--qp~~~i~~~  101 (437)
                      ++..||||||||++||++     ++.+|++++|||  ||++||+.....+.+.+++   .+.|+|+++|  +....+..+
T Consensus        73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i  149 (178)
T 1ye8_A           73 YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLVKEI  149 (178)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHHHHH
T ss_pred             cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHHHHH
Confidence            455799999999999996     999999999999  9999999999999888876   5677999997  456677888


Q ss_pred             cCeEEEEeCCeEEE
Q 013741          102 FDDLLLLSNGETIY  115 (437)
Q Consensus       102 fd~v~~L~~G~~v~  115 (437)
                      +|+    .+|+++.
T Consensus       150 ~~r----~~~~i~~  159 (178)
T 1ye8_A          150 RRL----PGAVLIE  159 (178)
T ss_dssp             HTC----TTCEEEE
T ss_pred             Hhc----CCcEEEE
Confidence            887    4566655

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.35  E-value=2.4e-13  Score=121.49  Aligned_cols=62  Identities=13%  Similarity=0.170  Sum_probs=57.7

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhcCCEEEEEecCCc
Q 013741           34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA----------------SAFFVIQVLKCIALDGRIVVCSIHQPS   95 (437)
Q Consensus        34 ~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~----------------~~~~i~~~l~~l~~~g~tvi~t~hqp~   95 (437)
                      ..|||||||++||++++.+|++++|||||+|||+.                .+.++.+.|++++++|.|+|+++|++.
T Consensus        83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~  160 (171)
T 4gp7_A           83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE  160 (171)
T ss_dssp             CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence            35999999999999999999999999999999999                668999999999888999999999964

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.34  E-value=2.1e-12  Score=132.19  Aligned_cols=75  Identities=16%  Similarity=0.160  Sum_probs=68.8

Q ss_pred             CCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 013741           33 RGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL  108 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~----~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L  108 (437)
                      ..||||||||++||++|+    .+|++++|||||++||+..+..+.+.|+++.++|.++|+++|++  .....+|+++.+
T Consensus       332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~  409 (430)
T 1w1w_A          332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV  409 (430)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence            459999999999999999    57999999999999999999999999999876688999999994  467889999999


Q ss_pred             e
Q 013741          109 S  109 (437)
Q Consensus       109 ~  109 (437)
                      .
T Consensus       410 ~  410 (430)
T 1w1w_A          410 Y  410 (430)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.16  E-value=1.3e-12  Score=120.76  Aligned_cols=52  Identities=15%  Similarity=0.049  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Q 013741           38 GEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS   95 (437)
Q Consensus        38 GerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~   95 (437)
                      |||||++||++|+.+|++|+|||||+|    ++..+.+.|+++ ++|.||| ++|++.
T Consensus       108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~  159 (208)
T 3b85_A          108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT  159 (208)
T ss_dssp             EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred             chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence            999999999999999999999999999    889999999998 6789999 999974

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.13  E-value=2.7e-11  Score=127.07  Aligned_cols=81  Identities=19%  Similarity=0.122  Sum_probs=74.4

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhcCCEEEEEecCCc---------h
Q 013741           31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA-----SAFFVIQVLKCIALDGRIVVCSIHQPS---------S   96 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~-----~~~~i~~~l~~l~~~g~tvi~t~hqp~---------~   96 (437)
                      .+..|||||+||+.+|+++..+|+++++| ||+|||..     .+..+.+.++.+++.|.|+|+++|++.         .
T Consensus       350 ~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~  428 (525)
T 1tf7_A          350 YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS  428 (525)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc
Confidence            45679999999999999999999999999 99999999     999999999999989999999999972         4


Q ss_pred             HHHhhcCeEEEEeCCe
Q 013741           97 HLFYLFDDLLLLSNGE  112 (437)
Q Consensus        97 ~i~~~fd~v~~L~~G~  112 (437)
                      .+.+++|++++|.+|+
T Consensus       429 ~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          429 HISTITDTIILLQYVE  444 (525)
T ss_dssp             CCTTTCSEEEEEEEEE
T ss_pred             ccceeeeEEEEEEEEE
Confidence            5678999999999887

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.98  E-value=3.1e-11  Score=122.37  Aligned_cols=97  Identities=19%  Similarity=0.096  Sum_probs=77.3

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHH--HHHHHHHHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSG--EKKRLSISIEILT----------QPTVLLLDEPTSGLDSASAFFVIQ   75 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgG--erkRv~ia~~l~~----------~p~ll~lDEPtsgLD~~~~~~i~~   75 (437)
                      ++++++++.++|.+.... +      .+|||  ||||+.||++|+.          +|++++|||||+|||+.++.++.+
T Consensus       135 ~~~~~~L~~~~L~~~~~~-~------~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~  207 (413)
T 1tq4_A          135 FPPDTYLEKMKFYEYDFF-I------IISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQ  207 (413)
T ss_dssp             CCHHHHHHHTTGGGCSEE-E------EEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred             HHHHHHHHHcCCCccCCe-E------EeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHH
Confidence            357889999998765322 1      28999  9999999999999          999999999999999999999999


Q ss_pred             HHHHHH-----hcC----CEEEEEecCCch-HHHhhcCeEE-EEeCC
Q 013741           76 VLKCIA-----LDG----RIVVCSIHQPSS-HLFYLFDDLL-LLSNG  111 (437)
Q Consensus        76 ~l~~l~-----~~g----~tvi~t~hqp~~-~i~~~fd~v~-~L~~G  111 (437)
                      .++++.     +.|    .++++++|.... .+.+++|++. .|.+|
T Consensus       208 ~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg  254 (413)
T 1tq4_A          208 DIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  254 (413)
T ss_dssp             HHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             HHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence            999985     332    678899998653 3677777664 34444

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.94  E-value=1.6e-09  Score=104.77  Aligned_cols=80  Identities=19%  Similarity=0.179  Sum_probs=62.9

Q ss_pred             CCCCHHH-HHHHHHHHHHHhCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHh-cCCEEEEEecCCc-h------
Q 013741           33 RGISSGE-KKRLSISIEILTQPTVLLLDEPTS---G---LDS-ASAFFVIQVLKCIAL-DGRIVVCSIHQPS-S------   96 (437)
Q Consensus        33 ~~lSgGe-rkRv~ia~~l~~~p~ll~lDEPts---g---LD~-~~~~~i~~~l~~l~~-~g~tvi~t~hqp~-~------   96 (437)
                      ..+|.+| ++|+. ++++..+|+++++||||+   |   +|. ....++++.|+++++ .|.|||+++|... .      
T Consensus       128 ~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~  206 (296)
T 1cr0_A          128 AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE  206 (296)
T ss_dssp             CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------
T ss_pred             CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccc
Confidence            3588998 66777 999999999999999999   5   555 667889999999987 4999999999962 2      


Q ss_pred             --------------HHHhhcCeEEEEeCCeE
Q 013741           97 --------------HLFYLFDDLLLLSNGET  113 (437)
Q Consensus        97 --------------~i~~~fd~v~~L~~G~~  113 (437)
                                    .+.+.+|+|++|++|+.
T Consensus       207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          207 EGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             --------CCC---CHHHHCSEEEEEEEC--
T ss_pred             cCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence                          67889999999998874

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.93  E-value=8.5e-10  Score=122.15  Aligned_cols=90  Identities=18%  Similarity=0.224  Sum_probs=75.8

Q ss_pred             ccCCCCHHHHHHHHHHHHH--HhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEE
Q 013741           31 HLRGISSGEKKRLSISIEI--LTQPTVLLLDEPTSGLDSASAFFV-IQVLKCIAL-DGRIVVCSIHQPSSHLFYLFDDLL  106 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~l--~~~p~ll~lDEPtsgLD~~~~~~i-~~~l~~l~~-~g~tvi~t~hqp~~~i~~~fd~v~  106 (437)
                      ..+++|+|++++..++..+  +++|++++|||||+|+|+.....+ ...++.+++ .|.++|+++|++  ++..++|++.
T Consensus       718 l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~  795 (934)
T 3thx_A          718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIP  795 (934)
T ss_dssp             -----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCT
T ss_pred             HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccc
Confidence            3468999999999999988  999999999999999999999888 677888887 599999999994  5778999999


Q ss_pred             EEeCCeEEEeeChhHH
Q 013741          107 LLSNGETIYFGDAKMA  122 (437)
Q Consensus       107 ~L~~G~~v~~G~~~~~  122 (437)
                      .+.+|++...++.+++
T Consensus       796 ~v~ng~v~~~~~~~~l  811 (934)
T 3thx_A          796 TVNNLHVTALTTEETL  811 (934)
T ss_dssp             TEEEEEEEEEEETTEE
T ss_pred             eeEeeEEEEEecCCcE
Confidence            9999999998876643

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.70  E-value=2.6e-09  Score=105.45  Aligned_cols=68  Identities=13%  Similarity=0.091  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeE
Q 013741           37 SGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGET  113 (437)
Q Consensus        37 gGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~  113 (437)
                      |||+||++|+++|..+|+++++||||+       .++.+.|+.+...+.|+++|+|.++  ..+.+||+++|.+|+.
T Consensus       225 gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~  292 (330)
T 2pt7_A          225 GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS  292 (330)
T ss_dssp             TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred             CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence            899999999999999999999999998       2456778777655568999999976  6788999999988763

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.64  E-value=5.7e-08  Score=89.50  Aligned_cols=78  Identities=12%  Similarity=-0.019  Sum_probs=65.5

Q ss_pred             CCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHHHh-cCCEEEEEecCCc-------hHHHhh
Q 013741           34 GISSGEKKRLSISIEILTQPT--VLLLDEPTSGL--DSASAFFVIQVLKCIAL-DGRIVVCSIHQPS-------SHLFYL  101 (437)
Q Consensus        34 ~lSgGerkRv~ia~~l~~~p~--ll~lDEPtsgL--D~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~-------~~i~~~  101 (437)
                      ..|.+|.++...+.....+|+  ++++||||+++  |+....++++.|+++++ .|.|||+++|...       ..+.+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~  182 (235)
T 2w0m_A          103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV  182 (235)
T ss_dssp             SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence            358999888888877778999  99999999887  99999999999999976 5899999999973       348889


Q ss_pred             cCeEEEEeCC
Q 013741          102 FDDLLLLSNG  111 (437)
Q Consensus       102 fd~v~~L~~G  111 (437)
                      +|++++|++.
T Consensus       183 ~d~vi~l~~~  192 (235)
T 2w0m_A          183 ADGIIRFRRM  192 (235)
T ss_dssp             CSEEEEEEEE
T ss_pred             eeEEEEEEEE
Confidence            9999999854

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.62  E-value=3.6e-10  Score=110.10  Aligned_cols=72  Identities=17%  Similarity=0.136  Sum_probs=59.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741           33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~  112 (437)
                      ..||||||||   |++++.+|+||+    |++||+.+...+..              .+|++.  ..+.+|++ +|++|+
T Consensus       199 ~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~G~  254 (305)
T 2v9p_A          199 YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDESGE  254 (305)
T ss_dssp             CCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC---
T ss_pred             cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeCCE
Confidence            4799999999   999999999999    99999999888752              167764  35789999 999999


Q ss_pred             EEEeeChhHHHHHHHH
Q 013741          113 TIYFGDAKMAVKFFAE  128 (437)
Q Consensus       113 ~v~~G~~~~~~~~f~~  128 (437)
                      +++.|+.++...+|.+
T Consensus       255 iv~~g~~~el~~~y~~  270 (305)
T 2v9p_A          255 QPFNITDADWKSFFVR  270 (305)
T ss_dssp             CCCCCCHHHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHHH
Confidence            9999999988666654

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.61  E-value=4.9e-08  Score=109.32  Aligned_cols=84  Identities=14%  Similarity=0.044  Sum_probs=65.8

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhc-CCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741           34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASA-FFVIQVLKCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNG  111 (437)
Q Consensus        34 ~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~-~~i~~~l~~l~~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G  111 (437)
                      .+|+|++ +++++++++++|++++||||++|+|+... ..+...|+.++++ |.++|+++|++. .+...+|++.++ +|
T Consensus       851 tf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g  927 (1022)
T 2o8b_B          851 TFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LG  927 (1022)
T ss_dssp             HHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EE
T ss_pred             hhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cC
Confidence            4566555 59999999999999999999999999985 5578899999886 999999999964 566778998887 58


Q ss_pred             eEE--EeeChh
Q 013741          112 ETI--YFGDAK  120 (437)
Q Consensus       112 ~~v--~~G~~~  120 (437)
                      ++.  +.|+++
T Consensus       928 ~~~~~~~~~~~  938 (1022)
T 2o8b_B          928 HMACMVENECE  938 (1022)
T ss_dssp             EEEEC------
T ss_pred             eEEEEEecCcc
Confidence            887  455543

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.61  E-value=3.1e-10  Score=104.18  Aligned_cols=89  Identities=12%  Similarity=-0.005  Sum_probs=68.6

Q ss_pred             HHHHHHHHHH------HHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCC----CHHHHHHH
Q 013741            4 DEINDIVEET------IIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGL----DSASAFFV   73 (437)
Q Consensus         4 ~~~~~~v~~~------l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgL----D~~~~~~i   73 (437)
                      ++.++++++.      ++.+|+.+.++...     +.||           +|+.+|++++|||||+|+    |+..+.++
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l  166 (207)
T 1znw_A          103 QPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRL  166 (207)
T ss_dssp             HHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHH
T ss_pred             HHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence            3444555555      55555555544433     3466           889999999999999998    78899999


Q ss_pred             HHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741           74 IQVLKCIAL-DGRIVVCSIHQPSSHLFYLFDDLLLLS  109 (437)
Q Consensus        74 ~~~l~~l~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~  109 (437)
                      .+.++++++ .|.|+|+++|++ .++..++|++++|.
T Consensus       167 ~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~  202 (207)
T 1znw_A          167 DTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT  202 (207)
T ss_dssp             HHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred             HHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence            999999986 689999999996 57999999999985

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.59  E-value=3.4e-08  Score=109.09  Aligned_cols=81  Identities=14%  Similarity=0.127  Sum_probs=64.8

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEE-E
Q 013741           32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVI-QVLKCIAL-DGRIVVCSIHQPSSHLFYLFDDLLL-L  108 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~-~~l~~l~~-~g~tvi~t~hqp~~~i~~~fd~v~~-L  108 (437)
                      ...+|+|++|++.|+++ +++|++++|||||+|||+.....+. ..++.+++ .|.++|+++|++  ++.+++|+.-- +
T Consensus       733 ~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v  809 (918)
T 3thx_B          733 RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQV  809 (918)
T ss_dssp             -CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTE
T ss_pred             HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccce
Confidence            35689999999999988 8999999999999999999999998 78888876 699999999996  35566665421 3


Q ss_pred             eCCeEEE
Q 013741          109 SNGETIY  115 (437)
Q Consensus       109 ~~G~~v~  115 (437)
                      .++++.+
T Consensus       810 ~n~~~~~  816 (918)
T 3thx_B          810 GNYHMGF  816 (918)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            3444433

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.56  E-value=8.4e-08  Score=91.97  Aligned_cols=78  Identities=14%  Similarity=0.048  Sum_probs=60.6

Q ss_pred             HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC--CCCHHHH---HHHHHHHHHHHh-c
Q 013741           10 VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS--GLDSASA---FFVIQVLKCIAL-D   83 (437)
Q Consensus        10 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPts--gLD~~~~---~~i~~~l~~l~~-~   83 (437)
                      ++++++.+++.+..+.     .+..+|+||++++   ++++.+|+++++||||+  ++|....   .++++.|+++++ .
T Consensus        99 ~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~  170 (279)
T 1nlf_A           99 RQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT  170 (279)
T ss_dssp             HHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc
Confidence            3455677776655443     3456999998876   57888999999999999  9998544   888999999975 6


Q ss_pred             CCEEEEEecCCc
Q 013741           84 GRIVVCSIHQPS   95 (437)
Q Consensus        84 g~tvi~t~hqp~   95 (437)
                      |.|||+++|+..
T Consensus       171 g~tvi~i~H~~~  182 (279)
T 1nlf_A          171 GCSIVFLHHASK  182 (279)
T ss_dssp             CCEEEEEEEC--
T ss_pred             CCEEEEEecCCC
Confidence            999999999864

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.33  E-value=1.1e-06  Score=80.34  Aligned_cols=78  Identities=18%  Similarity=0.092  Sum_probs=61.6

Q ss_pred             CCCHHH--HHHHHHHHHHHhC-CCEEEEeCCCCCCCHHH--------HHHHHHHHHHHHh-cCCEEEEEecCCch-----
Q 013741           34 GISSGE--KKRLSISIEILTQ-PTVLLLDEPTSGLDSAS--------AFFVIQVLKCIAL-DGRIVVCSIHQPSS-----   96 (437)
Q Consensus        34 ~lSgGe--rkRv~ia~~l~~~-p~ll~lDEPtsgLD~~~--------~~~i~~~l~~l~~-~g~tvi~t~hqp~~-----   96 (437)
                      ..++++  ++++..+++++.+ |+++++||||+++|...        ..++++.|+++++ .|.|+|++.|....     
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~  163 (220)
T 2cvh_A           84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEM  163 (220)
T ss_dssp             CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSS
T ss_pred             ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCc
Confidence            355664  5678888899886 99999999999999733        3556777888887 48999999997542     


Q ss_pred             -------HHHhhcCeEEEEeCC
Q 013741           97 -------HLFYLFDDLLLLSNG  111 (437)
Q Consensus        97 -------~i~~~fd~v~~L~~G  111 (437)
                             .+.+.+|.+++|++.
T Consensus       164 ~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          164 TKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             CCSCCCHHHHHTSSEEEEEEEC
T ss_pred             cccCCCcceeecCcEEEEEEEe
Confidence                   577899999999854

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.31  E-value=1.3e-07  Score=98.96  Aligned_cols=72  Identities=15%  Similarity=0.099  Sum_probs=59.2

Q ss_pred             HHHHHHHHHH-hCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH--------HHhhcCeEE
Q 013741           41 KRLSISIEIL-TQPTVLLLDEPTS-----GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH--------LFYLFDDLL  106 (437)
Q Consensus        41 kRv~ia~~l~-~~p~ll~lDEPts-----gLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~--------i~~~fd~v~  106 (437)
                      +.-.+..+|- .+|+++++||||+     +||+..+.++.+.++++++.|.|||+++|++...        ...++|+|+
T Consensus       126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi  205 (525)
T 1tf7_A          126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVV  205 (525)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEE
T ss_pred             HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEE
Confidence            3444555553 6899999999998     5699999999999999998899999999998642        355699999


Q ss_pred             EEeCCe
Q 013741          107 LLSNGE  112 (437)
Q Consensus       107 ~L~~G~  112 (437)
                      +|++|+
T Consensus       206 ~L~~~~  211 (525)
T 1tf7_A          206 ILRNVL  211 (525)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            999843

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.29  E-value=1.8e-07  Score=91.02  Aligned_cols=71  Identities=15%  Similarity=0.126  Sum_probs=55.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCc--------hHHHhh
Q 013741           33 RGISSGEKKRLSISIEILTQPT--VLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPS--------SHLFYL  101 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~~~p~--ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~--------~~i~~~  101 (437)
                      +.||   |||+.||++++.+|+  +|+|| ||+|||+...      ++++.+ .|.|+|+++|...        +.....
T Consensus       203 ~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~  272 (302)
T 3b9q_A          203 EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEEL  272 (302)
T ss_dssp             HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHH
T ss_pred             HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHH
Confidence            4588   999999999999999  99999 9999998754      355654 5899999999532        223344


Q ss_pred             cCeEEEEeCCeE
Q 013741          102 FDDLLLLSNGET  113 (437)
Q Consensus       102 fd~v~~L~~G~~  113 (437)
                      .+.+.++..|+.
T Consensus       273 ~~pi~~i~~Ge~  284 (302)
T 3b9q_A          273 GIPVKFIGVGEA  284 (302)
T ss_dssp             CCCEEEEECSSS
T ss_pred             CCCEEEEeCCCC
Confidence            567888888764

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.22  E-value=1e-06  Score=80.98  Aligned_cols=103  Identities=16%  Similarity=0.089  Sum_probs=67.9

Q ss_pred             HHHHHHHHHcCCcccccccccCc-ccCCCCHHHH-HHHHHHHHHHh-------CCCEEEEeCCCCCCCHHH---------
Q 013741            8 DIVEETIIKMGLQACAETKIGNW-HLRGISSGEK-KRLSISIEILT-------QPTVLLLDEPTSGLDSAS---------   69 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~-~~~~lSgGer-kRv~ia~~l~~-------~p~ll~lDEPtsgLD~~~---------   69 (437)
                      +++..+.+..++...  +...+- ..+..+++++ +++..+.+++.       +|+++++||||+++|+..         
T Consensus        74 ~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r  151 (231)
T 4a74_A           74 ERIREIAQNRGLDPD--EVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAER  151 (231)
T ss_dssp             HHHHHHHHHTTSCHH--HHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHH
T ss_pred             HHHHHHHHHcCCCHH--HHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHH
Confidence            356666777776432  111111 1233455554 44677777777       999999999999999842         


Q ss_pred             ---HHHHHHHHHHHHh-cCCEEEEEecCCc---hHHHhhcCeEEEEeCCe
Q 013741           70 ---AFFVIQVLKCIAL-DGRIVVCSIHQPS---SHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        70 ---~~~i~~~l~~l~~-~g~tvi~t~hqp~---~~i~~~fd~v~~L~~G~  112 (437)
                         ..++++.|+++++ .|.|||+++|...   ..+.+.+|++++|++|+
T Consensus       152 ~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          152 QQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred             HHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence               2378888888876 5999999999532   23778899999998754

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.19  E-value=1.4e-07  Score=90.32  Aligned_cols=54  Identities=11%  Similarity=0.162  Sum_probs=45.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 013741           33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP   94 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp   94 (437)
                      ..||||||||+.+|++++.   ++++|||+.|||+..    .+.++.+++. .++|+++|.-
T Consensus        97 ~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~  150 (270)
T 3sop_A           97 EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKA  150 (270)
T ss_dssp             HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTG
T ss_pred             HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEecc
Confidence            4699999999999999775   999999999999887    5566667666 8999998873

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.16  E-value=1e-06  Score=96.42  Aligned_cols=82  Identities=12%  Similarity=0.040  Sum_probs=64.9

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741           34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFV-IQVLKCIAL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNG  111 (437)
Q Consensus        34 ~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i-~~~l~~l~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G  111 (437)
                      .+|+|++ ++..+...+++|++++||||++|+|+.....+ ...++.+++ .|.++|+++|++.  +..++|++..+.+|
T Consensus       669 tf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~  745 (800)
T 1wb9_A          669 TFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANV  745 (800)
T ss_dssp             -CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEE
T ss_pred             hhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEE
Confidence            4566655 45555567899999999999999999888776 788999988 5999999999964  55788988778888


Q ss_pred             eEEEeeC
Q 013741          112 ETIYFGD  118 (437)
Q Consensus       112 ~~v~~G~  118 (437)
                      ++.+...
T Consensus       746 ~~~~~~~  752 (800)
T 1wb9_A          746 HLDALEH  752 (800)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEc
Confidence            8776543

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.14  E-value=1.3e-06  Score=86.65  Aligned_cols=108  Identities=15%  Similarity=0.068  Sum_probs=65.2

Q ss_pred             HHHHHHHHHcCCcccccccccCc-ccCC-CCHHHHHHHHHHHHHH-------hCCCEEEEeCCCCCCCHHH---------
Q 013741            8 DIVEETIIKMGLQACAETKIGNW-HLRG-ISSGEKKRLSISIEIL-------TQPTVLLLDEPTSGLDSAS---------   69 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~-~~~~-lSgGerkRv~ia~~l~-------~~p~ll~lDEPtsgLD~~~---------   69 (437)
                      +++..+.+.+++...  +...+- ..+. -|.++++++.++.+++       .+|+++++||||+++|+..         
T Consensus       180 ~~i~~i~q~~~~~~~--~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r  257 (349)
T 1pzn_A          180 ERIREIAQNRGLDPD--EVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAER  257 (349)
T ss_dssp             HHHHHHHHTTTCCHH--HHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHH
T ss_pred             HHHHHHHHHcCCCHH--HHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHH
Confidence            455566666666421  111111 1111 2688999999999999       6899999999999999852         


Q ss_pred             ---HHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeC
Q 013741           70 ---AFFVIQVLKCIAL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD  118 (437)
Q Consensus        70 ---~~~i~~~l~~l~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~  118 (437)
                         ..++++.|+++++ .|.|||++.|... ..-..|++...+.+|+++.++.
T Consensus       258 ~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~  309 (349)
T 1pzn_A          258 QQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA  309 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence               4677777888876 5899999999854 4444455566666776655443

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.13  E-value=1.6e-06  Score=94.40  Aligned_cols=66  Identities=24%  Similarity=0.189  Sum_probs=54.5

Q ss_pred             cCCCCHHHHHHHHHHHHH--HhCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHhcCCEEEEEecCCchHHHhhc
Q 013741           32 LRGISSGEKKRLSISIEI--LTQPTVLLLDEP---TSGLDSASA-FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF  102 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l--~~~p~ll~lDEP---tsgLD~~~~-~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~f  102 (437)
                      ..++|+|+++++.++..+  +++|++++||||   |++||..+. ..+++.|++   .|.++|+++|++  ++.+++
T Consensus       633 ~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~  704 (765)
T 1ewq_A          633 AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG  704 (765)
T ss_dssp             --CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC
T ss_pred             HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh
Confidence            357999999999999999  999999999999   999998875 567777765   589999999995  344544

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.11  E-value=1.1e-07  Score=94.20  Aligned_cols=78  Identities=10%  Similarity=0.150  Sum_probs=68.0

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCC-----EEEEEecCCchHHHhhcCe
Q 013741           32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL--DGR-----IVVCSIHQPSSHLFYLFDD  104 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~--~g~-----tvi~t~hqp~~~i~~~fd~  104 (437)
                      +..+|+|| ||+++|   +.+|++      |+|||+....++.+.++++++  +|.     ||++++|+.+   ..++|+
T Consensus       169 ~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~  235 (347)
T 2obl_A          169 VTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDE  235 (347)
T ss_dssp             HHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHH
T ss_pred             HHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhh
Confidence            45689999 899999   578876      999999999999999999874  577     8999999976   456999


Q ss_pred             EEEEeCCeEEEeeChhHH
Q 013741          105 LLLLSNGETIYFGDAKMA  122 (437)
Q Consensus       105 v~~L~~G~~v~~G~~~~~  122 (437)
                      ++++.+|+++..|+..+.
T Consensus       236 v~~i~dG~Ivl~~~l~~~  253 (347)
T 2obl_A          236 VRSILDGHIVLTRELAEE  253 (347)
T ss_dssp             HHHHCSEEEEBCHHHHTT
T ss_pred             eEEeeCcEEEEeCCHHHc
Confidence            999999999999887754

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.09  E-value=1.9e-06  Score=85.62  Aligned_cols=71  Identities=15%  Similarity=0.121  Sum_probs=54.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCc--------hHHHhh
Q 013741           33 RGISSGEKKRLSISIEILTQPT--VLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPS--------SHLFYL  101 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~~~p~--ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~--------~~i~~~  101 (437)
                      ..||   |||+.||++++.+|+  +|+|| ||+|||+....      +++.+ .|.|+|+++|...        +.....
T Consensus       260 ~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~  329 (359)
T 2og2_A          260 EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEEL  329 (359)
T ss_dssp             HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHH
T ss_pred             HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHh
Confidence            4588   999999999999999  99999 99999987653      45554 5899999999532        123344


Q ss_pred             cCeEEEEeCCeE
Q 013741          102 FDDLLLLSNGET  113 (437)
Q Consensus       102 fd~v~~L~~G~~  113 (437)
                      .+.|.++..|+.
T Consensus       330 ~~pI~~ig~Ge~  341 (359)
T 2og2_A          330 GIPVKFIGVGEA  341 (359)
T ss_dssp             CCCEEEEECSSS
T ss_pred             CCCEEEEeCCCC
Confidence            567777777763

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.03  E-value=2.7e-07  Score=94.36  Aligned_cols=78  Identities=12%  Similarity=0.146  Sum_probs=68.3

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---c-CC-----EEEEEecCCchHHHhhc
Q 013741           32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL---D-GR-----IVVCSIHQPSSHLFYLF  102 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~---~-g~-----tvi~t~hqp~~~i~~~f  102 (437)
                      ...+|+|| ||++||   +.+|++      |+|||+.....+.+.++++.+   + |.     ||++++|+.+   ...+
T Consensus       256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~ia  322 (438)
T 2dpy_A          256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIA  322 (438)
T ss_dssp             HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHH
T ss_pred             HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhh
Confidence            45689999 999999   888887      999999999999999999876   3 64     8999999986   4678


Q ss_pred             CeEEEEeCCeEEEeeChhHH
Q 013741          103 DDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus       103 d~v~~L~~G~~v~~G~~~~~  122 (437)
                      |++++|.+|+++..|++.+.
T Consensus       323 d~v~~l~dG~Ivl~~~~~~~  342 (438)
T 2dpy_A          323 DSARAILDGHIVLSRRLAEA  342 (438)
T ss_dssp             HHHHHHSSEEEEECHHHHHT
T ss_pred             ceEEEEeCcEEEEeCCHHHc
Confidence            99999999999999887654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.01  E-value=3.5e-06  Score=80.16  Aligned_cols=61  Identities=13%  Similarity=0.208  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741           41 KRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        41 kRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~  110 (437)
                      -|++|+++|..+|+++++||||   |..+...++   +. +..|.+|++++|.++  ....+||++.|..
T Consensus        87 l~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~  147 (261)
T 2eyu_A           87 FADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP  147 (261)
T ss_dssp             HHHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred             HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence            3899999999999999999999   888866543   33 457899999999965  5788999988853

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.93  E-value=8.5e-06  Score=73.71  Aligned_cols=74  Identities=15%  Similarity=0.031  Sum_probs=55.7

Q ss_pred             HHHHHHHHcCCcccccccccCcccCCCCHHHHHH-HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE
Q 013741            9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKR-LSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI   86 (437)
Q Consensus         9 ~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkR-v~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t   86 (437)
                      .+.+.++..++....   +++ +...+|+||||| +..+++++.+|.++++|||||++|..+..++.+.|+++..+|.+
T Consensus       128 ~~~~~~~~~~~~~~~---v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~  202 (210)
T 1pui_A          128 QMIEWAVDSNIAVLV---LLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP  202 (210)
T ss_dssp             HHHHHHHHTTCCEEE---EEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHcCCCeEE---EEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence            445556666654321   222 234589999999 89999999999999999999999999999999999998776654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.89  E-value=2.6e-07  Score=90.30  Aligned_cols=55  Identities=7%  Similarity=0.026  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS   67 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~   67 (437)
                      .+++.+.++.++ .+..+..+     ..+|||||||+++|++++.+|+||++|||+..+|.
T Consensus       155 ~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~  209 (312)
T 3aez_A          155 RRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG  209 (312)
T ss_dssp             HHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred             HHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence            456778888887 44444444     46999999999999999999999999999999986

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.89  E-value=6.4e-08  Score=89.56  Aligned_cols=50  Identities=8%  Similarity=0.047  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHH-----HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741           33 RGISSGEKKRLSI-----SIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus        33 ~~lSgGerkRv~i-----a~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      ..+|||||||+++     +++++.+|++++|||||+++|..+...+.+.|++..+
T Consensus       121 ~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~  175 (218)
T 1z6g_A          121 MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI  175 (218)
T ss_dssp             ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred             ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            3689999999999     8899999999999999999999999999999888654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.79  E-value=2.7e-05  Score=69.06  Aligned_cols=51  Identities=12%  Similarity=0.135  Sum_probs=45.0

Q ss_pred             HHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Q 013741           47 IEILTQPTVLLLDEPTS-GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH   97 (437)
Q Consensus        47 ~~l~~~p~ll~lDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~   97 (437)
                      ...+.+|++|+||||++ ++|......+.+.+.+..++|+++|+|+|.+..+
T Consensus        95 ~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~  146 (180)
T 3ec2_A           95 LKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR  146 (180)
T ss_dssp             HHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred             HHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence            34567999999999995 9999999999999999888899999999998754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.77  E-value=9e-07  Score=80.11  Aligned_cols=79  Identities=10%  Similarity=0.073  Sum_probs=54.3

Q ss_pred             cCCCCHHHHHHHH-HHH---HHHhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhcCCEEEE---Ee-cCCchHHHhh
Q 013741           32 LRGISSGEKKRLS-ISI---EILTQPTVLLLDE--PTSGLDSASAFFVIQVLKCIALDGRIVVC---SI-HQPSSHLFYL  101 (437)
Q Consensus        32 ~~~lSgGerkRv~-ia~---~l~~~p~ll~lDE--PtsgLD~~~~~~i~~~l~~l~~~g~tvi~---t~-hqp~~~i~~~  101 (437)
                      ...+|+|||+++. +.+   ++..+|+++++||  |+..+|....    +.|+++-++..++|+   ++ |+.+   ..+
T Consensus        81 ~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~----~~l~~~l~~~~~~ilgti~vsh~~~---~~~  153 (189)
T 2i3b_A           81 VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI----QAVRQTLSTPGTIILGTIPVPKGKP---LAL  153 (189)
T ss_dssp             EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHH----HHHHHHHHCSSCCEEEECCCCCSSC---CTT
T ss_pred             EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHH----HHHHHHHhCCCcEEEEEeecCCCCc---hHH
Confidence            3469999998884 343   4789999999999  8988888654    444444444555553   32 7653   245


Q ss_pred             cCeEEEEeCCeEEEee
Q 013741          102 FDDLLLLSNGETIYFG  117 (437)
Q Consensus       102 fd~v~~L~~G~~v~~G  117 (437)
                      .|++..+.+|+++...
T Consensus       154 vd~i~~~~~~~i~~~~  169 (189)
T 2i3b_A          154 VEEIRNRKDVKVFNVT  169 (189)
T ss_dssp             HHHHHTTCCSEEEECC
T ss_pred             HHHHeecCCcEEEEeC
Confidence            6777777888887654

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.77  E-value=6.1e-08  Score=88.61  Aligned_cols=83  Identities=12%  Similarity=0.035  Sum_probs=67.8

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHH----HHHHHHHHHHhCCCEEEEeCCCCC-------CCHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEK----KRLSISIEILTQPTVLLLDEPTSG-------LDSASAFFVIQV   76 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGer----kRv~ia~~l~~~p~ll~lDEPtsg-------LD~~~~~~i~~~   76 (437)
                      +++.+.++.+++.+..+.+.     ..+|+|||    ||+++++.++.+|.++++||||++       ||+.....+.+.
T Consensus        68 ~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~  142 (211)
T 3asz_A           68 ALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR  142 (211)
T ss_dssp             HHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence            56777888888776555433     45899964    688999999999999999999999       999999999999


Q ss_pred             HHHHH-hcCCEEEEEecCCc
Q 013741           77 LKCIA-LDGRIVVCSIHQPS   95 (437)
Q Consensus        77 l~~l~-~~g~tvi~t~hqp~   95 (437)
                      +++.. +.|+|++.++|+..
T Consensus       143 l~r~~~~~g~t~~~~~~~~~  162 (211)
T 3asz_A          143 LKRDVLERGRSLEGVVAQYL  162 (211)
T ss_dssp             HHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHH
Confidence            98864 57899988888743

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.74  E-value=1e-05  Score=80.32  Aligned_cols=59  Identities=19%  Similarity=0.298  Sum_probs=48.3

Q ss_pred             HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCC
Q 013741           44 SISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG  111 (437)
Q Consensus        44 ~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G  111 (437)
                      +|+++|..+|+++++||||   |..+    .+.+.+++..|.+|++|+|.++ .+ ..+||++.|..|
T Consensus       188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~-~~-~~~dRli~l~~~  246 (356)
T 3jvv_A          188 ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTS-AA-KTIDRVVDVFPA  246 (356)
T ss_dssp             HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred             HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence            9999999999999999999   6544    4455556778999999999976 34 789999988654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.45  E-value=0.00024  Score=65.55  Aligned_cols=79  Identities=16%  Similarity=0.169  Sum_probs=50.8

Q ss_pred             CCCHHHHHH-HHHHHHHH--hCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHh-cCCEEEEEecCCchH
Q 013741           34 GISSGEKKR-LSISIEIL--TQPTVLLLDEPTSGLDSA-------S-----AFFVIQVLKCIAL-DGRIVVCSIHQPSSH   97 (437)
Q Consensus        34 ~lSgGerkR-v~ia~~l~--~~p~ll~lDEPtsgLD~~-------~-----~~~i~~~l~~l~~-~g~tvi~t~hqp~~~   97 (437)
                      ..++.+... +.-..+++  .+|+++++|||++.+|+.       +     ..++++.|+++++ .|.|||++.|.....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~  177 (243)
T 1n0w_A           98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV  177 (243)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence            356665433 33344444  489999999999999975       3     4567777887776 589999999964321


Q ss_pred             ------------------HHhhcCeEEEEeCCe
Q 013741           98 ------------------LFYLFDDLLLLSNGE  112 (437)
Q Consensus        98 ------------------i~~~fd~v~~L~~G~  112 (437)
                                        +.+++|.+++|++|+
T Consensus       178 ~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~  210 (243)
T 1n0w_A          178 DGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR  210 (243)
T ss_dssp             -------------------CCTTCEEEEEEECS
T ss_pred             CCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence                              223789999998653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.40  E-value=7.5e-06  Score=79.46  Aligned_cols=57  Identities=14%  Similarity=0.107  Sum_probs=45.0

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCc
Q 013741           31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTS-GLDSASAFFVIQVLKCIALD-GRIVVCSIHQPS   95 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPts-gLD~~~~~~i~~~l~~l~~~-g~tvi~t~hqp~   95 (437)
                      +.+++|||||||+.+|++++    ++++||||+ |||+...    +.+++++++ +.++|++.|+..
T Consensus       110 ~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          110 YLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             HHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             HHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence            44679999999988877764    999999998 5999873    566666653 678888899854

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.29  E-value=0.00012  Score=63.30  Aligned_cols=50  Identities=10%  Similarity=0.188  Sum_probs=40.5

Q ss_pred             HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCE-EEEEecCCchHH
Q 013741           48 EILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI-VVCSIHQPSSHL   98 (437)
Q Consensus        48 ~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~t-vi~t~hqp~~~i   98 (437)
                      +++.+|++|++|||++ +|...+..+.+.+.++.++|++ +|+++|.+..++
T Consensus        79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l  129 (149)
T 2kjq_A           79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQL  129 (149)
T ss_dssp             GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTS
T ss_pred             HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHc
Confidence            3467899999999998 5555588899999998888887 899999765443

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.29  E-value=1.4e-06  Score=78.15  Aligned_cols=80  Identities=16%  Similarity=0.234  Sum_probs=61.2

Q ss_pred             CHHHHHHHHHHH------HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC-CchHHHhhcCeEEEE
Q 013741           36 SSGEKKRLSISI------EILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ-PSSHLFYLFDDLLLL  108 (437)
Q Consensus        36 SgGerkRv~ia~------~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq-p~~~i~~~fd~v~~L  108 (437)
                      |+|+++++.++.      ++..+|+...+|+   |+|+..... .+.++.+.+.+.++|.++|. +. ++.+.+|+|+  
T Consensus        96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--  168 (189)
T 2bdt_A           96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--  168 (189)
T ss_dssp             HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--
T ss_pred             hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--
Confidence            888888888888      8999999888884   899988888 88888886677899999998 64 6889999998  


Q ss_pred             eCCeEEEeeChhHH
Q 013741          109 SNGETIYFGDAKMA  122 (437)
Q Consensus       109 ~~G~~v~~G~~~~~  122 (437)
                      ++|+++..|+++-+
T Consensus       169 ~~g~~~~~~~~~~~  182 (189)
T 2bdt_A          169 TNPRFIFCMAGDPL  182 (189)
T ss_dssp             HCGGGSCC------
T ss_pred             hCCcEEEeecCCch
Confidence            99999999987643

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.22  E-value=2.8e-05  Score=72.75  Aligned_cols=75  Identities=11%  Similarity=0.118  Sum_probs=50.8

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHh-hcCeEEEEeC
Q 013741           32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFY-LFDDLLLLSN  110 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~-~fd~v~~L~~  110 (437)
                      +..+|+||+||+.+ ++++.+|+++++|||....|..        +.++  .+.+|++++|... .+.+ +.+++   .+
T Consensus       114 ~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~--~~~~i~v~th~~~-~~~r~~~r~~---~~  178 (245)
T 2jeo_A          114 VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM--FHLRLFVDTDSDV-RLSRRVLRDV---RR  178 (245)
T ss_dssp             ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT--CSEEEEEECCHHH-HHHHHHHHHT---C-
T ss_pred             cccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh--cCeEEEEECCHHH-HHHHHHHHHH---Hc
Confidence            35799999999987 5778899999999998888753        2222  3789999999743 3433 33434   66


Q ss_pred             CeEEEeeChhHHHHHH
Q 013741          111 GETIYFGDAKMAVKFF  126 (437)
Q Consensus       111 G~~v~~G~~~~~~~~f  126 (437)
                      |+     +.+++.+.+
T Consensus       179 G~-----~~e~~~~~~  189 (245)
T 2jeo_A          179 GR-----DLEQILTQY  189 (245)
T ss_dssp             -------CHHHHHHHH
T ss_pred             CC-----CHHHHHHHH
Confidence            65     566665544

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.07  E-value=0.0011  Score=66.60  Aligned_cols=73  Identities=14%  Similarity=0.156  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHH--hCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHh-cCCEEEEEecCCc---------
Q 013741           40 KKRLSISIEIL--TQPTVLLLDEPTSGLDSASA------------FFVIQVLKCIAL-DGRIVVCSIHQPS---------   95 (437)
Q Consensus        40 rkRv~ia~~l~--~~p~ll~lDEPtsgLD~~~~------------~~i~~~l~~l~~-~g~tvi~t~hqp~---------   95 (437)
                      ++.+.-+.+++  .+|+++++|||++.+|+...            .++++.|+++++ .|.|||+++|.-.         
T Consensus       259 ~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~  338 (400)
T 3lda_A          259 LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFN  338 (400)
T ss_dssp             HHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----------
T ss_pred             HHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCcccccc
Confidence            33444444443  46999999999999996433            678889999987 5999999999811         


Q ss_pred             ---------hHHHhhcCeEEEEeCCe
Q 013741           96 ---------SHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        96 ---------~~i~~~fd~v~~L~~G~  112 (437)
                               ..+.+.+|.++.|.+|+
T Consensus       339 g~~~~p~gg~~l~~~ad~vl~L~~~~  364 (400)
T 3lda_A          339 PDPKKPIGGNIMAYSSTTRLGFKKGK  364 (400)
T ss_dssp             ---------CHHHHHCSEEEEEEECS
T ss_pred             CCCccCCchhHHHHhcceEEEEEecC
Confidence                     23567789999998764

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.05  E-value=0.0024  Score=65.28  Aligned_cols=79  Identities=13%  Similarity=0.042  Sum_probs=60.9

Q ss_pred             CCCCHHHHHHHHHHHHHH--hCCCEEEEeCCCCCCCH--------HHHHHHHHHHHHHHh-cCCEEEEEec---------
Q 013741           33 RGISSGEKKRLSISIEIL--TQPTVLLLDEPTSGLDS--------ASAFFVIQVLKCIAL-DGRIVVCSIH---------   92 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~--~~p~ll~lDEPtsgLD~--------~~~~~i~~~l~~l~~-~g~tvi~t~h---------   92 (437)
                      .++|++|.+  +.++.++  .+|+++++|+++...+.        ....++.+.||.+++ .|.+||+++|         
T Consensus       294 ~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~  371 (454)
T 2r6a_A          294 PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQ  371 (454)
T ss_dssp             TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC-
T ss_pred             CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCC
Confidence            368999877  5566666  68999999999987742        344678888999987 5889999998         


Q ss_pred             C--Cc-------hHHHhhcCeEEEEeCCeE
Q 013741           93 Q--PS-------SHLFYLFDDLLLLSNGET  113 (437)
Q Consensus        93 q--p~-------~~i~~~fd~v~~L~~G~~  113 (437)
                      .  |.       ..+.+.+|.|++|++++.
T Consensus       372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~  401 (454)
T 2r6a_A          372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY  401 (454)
T ss_dssp             --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred             CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence            2  43       157788999999987763

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.95  E-value=0.00083  Score=65.70  Aligned_cols=46  Identities=9%  Similarity=0.128  Sum_probs=38.3

Q ss_pred             HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCch
Q 013741           49 ILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS   96 (437)
Q Consensus        49 l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~   96 (437)
                      +..+|+++++|||++ ||..++..+.+.+++.. .+.++|+++|+|..
T Consensus       131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~  176 (354)
T 1sxj_E          131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP  176 (354)
T ss_dssp             ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS
T ss_pred             cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHH
Confidence            577999999999999 99999999999998854 46789999999864

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.47  E-value=0.0012  Score=65.80  Aligned_cols=59  Identities=15%  Similarity=0.246  Sum_probs=46.5

Q ss_pred             HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEe
Q 013741           42 RLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS  109 (437)
Q Consensus        42 Rv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~  109 (437)
                      +.+|+.+|..+|+++++|||+   |..+...   .++. +..|.++++|+|..+  +.+.+||++.|.
T Consensus       199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~  257 (372)
T 2ewv_A          199 ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF  257 (372)
T ss_dssp             HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred             HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence            579999999999999999999   7665443   3443 456889999999954  678889887764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.41  E-value=0.00029  Score=69.89  Aligned_cols=74  Identities=15%  Similarity=-0.145  Sum_probs=53.3

Q ss_pred             CCCHHHHHHHHHHHHHH-hCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhc
Q 013741           34 GISSGEKKRLSISIEIL-TQPTVLLLDE---PT------SGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPSSHLFYLF  102 (437)
Q Consensus        34 ~lSgGerkRv~ia~~l~-~~p~ll~lDE---Pt------sgLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~~~i~~~f  102 (437)
                      .+|+|+++|..++..+. .+|++++|||   |+      .++|...+..+.+.|+++.+ .|.++++.+|. + +..+++
T Consensus       258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~  335 (365)
T 1lw7_A          258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYN  335 (365)
T ss_dssp             HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHH
T ss_pred             HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHH
Confidence            46777788888877764 5999999999   65      68999999999999999865 47888888864 3 456666


Q ss_pred             CeEEEEe
Q 013741          103 DDLLLLS  109 (437)
Q Consensus       103 d~v~~L~  109 (437)
                      |++.+++
T Consensus       336 ~~i~~i~  342 (365)
T 1lw7_A          336 QVKAVIE  342 (365)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665553

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.39  E-value=0.0014  Score=69.57  Aligned_cols=75  Identities=12%  Similarity=0.131  Sum_probs=55.5

Q ss_pred             HhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh--cCCEEEEEecCCc------hHHHhhc-----CeEEEEeC
Q 013741           50 LTQPTVLLLDEP------TSGLDSASAFFVIQVLKCIAL--DGRIVVCSIHQPS------SHLFYLF-----DDLLLLSN  110 (437)
Q Consensus        50 ~~~p~ll~lDEP------tsgLD~~~~~~i~~~l~~l~~--~g~tvi~t~hqp~------~~i~~~f-----d~v~~L~~  110 (437)
                      ..+|+++++|||      |+|||+....++.+.++++.+  .+.++++++|...      ..+.+..     ..+.++.+
T Consensus       144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK  223 (608)
T 3szr_A          144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK  223 (608)
T ss_dssp             SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC
T ss_pred             CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc
Confidence            346999999999      999999999999999999754  3567788888754      1223333     34788899


Q ss_pred             CeEEEeeChhHHHH
Q 013741          111 GETIYFGDAKMAVK  124 (437)
Q Consensus       111 G~~v~~G~~~~~~~  124 (437)
                      +..+..|+.+++.+
T Consensus       224 ~Dlv~~g~~~~~~~  237 (608)
T 3szr_A          224 PDLVDKGTEDKVVD  237 (608)
T ss_dssp             GGGSSSSSTTCCCC
T ss_pred             hhhcCcccHHHHHH
Confidence            98888887654443

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.27  E-value=0.012  Score=54.03  Aligned_cols=60  Identities=17%  Similarity=0.102  Sum_probs=45.9

Q ss_pred             hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHh-cCCEEEEEecCCchH-------HHhhcCeEEEEeC
Q 013741           51 TQPTVLLLDEPTSGL--DSASAFFVIQVLKCIAL-DGRIVVCSIHQPSSH-------LFYLFDDLLLLSN  110 (437)
Q Consensus        51 ~~p~ll~lDEPtsgL--D~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~~~-------i~~~fd~v~~L~~  110 (437)
                      .+|+++++|+|++.+  |.....+.+..|+++++ .|.||++++|.....       +.+.+|.++.|..
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            589999999999988  65556667777777664 689999999986532       5677899999974

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.24  E-value=0.00063  Score=68.87  Aligned_cols=54  Identities=11%  Similarity=0.137  Sum_probs=40.3

Q ss_pred             CCHHHHHHHHHHHHHHhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 013741           35 ISSGEKKRLSISIEILTQPT---VLLLDEPT-SGLDSASAFFVIQVLKCIALDGRIVVCSIHQ   93 (437)
Q Consensus        35 lSgGerkRv~ia~~l~~~p~---ll~lDEPt-sgLD~~~~~~i~~~l~~l~~~g~tvi~t~hq   93 (437)
                      ++.++++|+.|+++++.+|+   ++++|||| .|||+...    +.++.+.. +.++|+++|.
T Consensus       119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK  176 (418)
T 2qag_C          119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAK  176 (418)
T ss_dssp             HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEES
T ss_pred             HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEc
Confidence            46677888999999999999   99999999 69998873    44555554 6777777776

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.01  E-value=0.002  Score=62.28  Aligned_cols=56  Identities=16%  Similarity=0.052  Sum_probs=42.5

Q ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCc
Q 013741           35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPS   95 (437)
Q Consensus        35 lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~   95 (437)
                      ++..+|||+.||++++.+|+.++|     +||+.+..++++.++++.+ .|.|+|+++|.+.
T Consensus       203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~  259 (304)
T 1rj9_A          203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG  259 (304)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred             HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence            456669999999999999994444     4555555567777777776 4899999999853

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.99  E-value=0.021  Score=56.26  Aligned_cols=78  Identities=18%  Similarity=0.164  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH---H-hcCCEEEEEecCCch-----
Q 013741           41 KRLSISIEILTQ--PTVLLLDEPTSGL----------DS---ASAFFVIQVLKCI---A-LDGRIVVCSIHQPSS-----   96 (437)
Q Consensus        41 kRv~ia~~l~~~--p~ll~lDEPtsgL----------D~---~~~~~i~~~l~~l---~-~~g~tvi~t~hqp~~-----   96 (437)
                      +-+.++.+++.+  |+++++|||++.+          |+   ..+..+.+.++++   + +.|.+||++.|....     
T Consensus       126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~  205 (349)
T 2zr9_A          126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF  205 (349)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred             HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence            345677778765  9999999999998          33   2223444455554   3 468999999886431     


Q ss_pred             ----------HHHhhcCeEEEEeCCeEEEeeC
Q 013741           97 ----------HLFYLFDDLLLLSNGETIYFGD  118 (437)
Q Consensus        97 ----------~i~~~fd~v~~L~~G~~v~~G~  118 (437)
                                .+.+.+|.++.+.+++++..|+
T Consensus       206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~  237 (349)
T 2zr9_A          206 GSPETTTGGKALKFYASVRLDVRRIETLKDGT  237 (349)
T ss_dssp             ----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred             CCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence                      2567899999998887765554

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.83  E-value=0.0005  Score=66.18  Aligned_cols=37  Identities=16%  Similarity=0.219  Sum_probs=31.5

Q ss_pred             ccCCCCHHHHHHHHHH--HHHHhCCCEEEEeCCCCCCCHHH
Q 013741           31 HLRGISSGEKKRLSIS--IEILTQPTVLLLDEPTSGLDSAS   69 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia--~~l~~~p~ll~lDEPtsgLD~~~   69 (437)
                      +.+.+||||++|+.+|  +++  +|+|+|+|||++|+|+..
T Consensus       131 y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~  169 (290)
T 1odf_A          131 YDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL  169 (290)
T ss_dssp             EETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred             CccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence            3467999999999987  444  999999999999999753

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.82  E-value=0.00038  Score=61.68  Aligned_cols=69  Identities=13%  Similarity=0.148  Sum_probs=47.2

Q ss_pred             HHHHHHHH-cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEE-------EEeCCCCC---CCHHHHHHHHHHH
Q 013741            9 IVEETIIK-MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVL-------LLDEPTSG---LDSASAFFVIQVL   77 (437)
Q Consensus         9 ~v~~~l~~-l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll-------~lDEPtsg---LD~~~~~~i~~~l   77 (437)
                      .+++.++. +.   -.|+.++.    ++|||||||++|||+++.+|++.       .-|.|..+   +|......+.+.+
T Consensus        84 ~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i  156 (171)
T 2f1r_A           84 DLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFI  156 (171)
T ss_dssp             CHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHH
T ss_pred             CHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHH
Confidence            45556665 43   35788875    69999999999999999999873       22444322   3445567777777


Q ss_pred             HHHHhcC
Q 013741           78 KCIALDG   84 (437)
Q Consensus        78 ~~l~~~g   84 (437)
                      .+...+|
T Consensus       157 ~~~~~~~  163 (171)
T 2f1r_A          157 LSLLREG  163 (171)
T ss_dssp             HHHHTC-
T ss_pred             HHHHhcc
Confidence            6666654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.81  E-value=0.00089  Score=65.17  Aligned_cols=57  Identities=19%  Similarity=0.088  Sum_probs=45.4

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcC
Q 013741           34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFD  103 (437)
Q Consensus        34 ~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd  103 (437)
                      .+|+|||||+..++.++.+|+++  |||         .++.+.++++. .+.+|++++|.+. +.-.++|
T Consensus       141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~  197 (318)
T 1nij_A          141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN  197 (318)
T ss_dssp             HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred             hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence            58999999998888888888877  888         67888888875 5789999999864 3334443

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.80  E-value=0.0002  Score=66.84  Aligned_cols=46  Identities=20%  Similarity=0.191  Sum_probs=38.8

Q ss_pred             cCCCCHHHHHHHHHHHHH-HhCCCEEEEe----CCCCCCCHHHHHHHHHHHHHHHhcC
Q 013741           32 LRGISSGEKKRLSISIEI-LTQPTVLLLD----EPTSGLDSASAFFVIQVLKCIALDG   84 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l-~~~p~ll~lD----EPtsgLD~~~~~~i~~~l~~l~~~g   84 (437)
                      +..+||    |+   +++ +.+|++++||    |||+|||..+...+.+.++++.+++
T Consensus       150 ~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~  200 (246)
T 2bbw_A          150 IHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA  200 (246)
T ss_dssp             EETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred             CcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence            345777    54   566 8999999999    9999999999999999999987653

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=95.70  E-value=0.0026  Score=64.33  Aligned_cols=70  Identities=17%  Similarity=0.162  Sum_probs=51.6

Q ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCchHHHhhcCeE
Q 013741           31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA-LDGRIVVCSIHQPSSHLFYLFDDL  105 (437)
Q Consensus        31 ~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~-~~g~tvi~t~hqp~~~i~~~fd~v  105 (437)
                      ....+|+|+++|+.++++|+.+|.++++    +++|...+ ..++.+++.. +.|.+++.++..-...+.++++.+
T Consensus       249 ~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i  319 (416)
T 1udx_A          249 PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL  319 (416)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence            3456999999999999999999999999    99999877 5555555544 457666655544345566666654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.23  E-value=0.028  Score=57.71  Aligned_cols=59  Identities=19%  Similarity=0.268  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hcCCEEEEEecCCc
Q 013741           37 SGEKKRLSISIEILTQPTVLLLDEP----------TSGLDSASAFFVIQVLKCIA----LDGRIVVCSIHQPS   95 (437)
Q Consensus        37 gGerkRv~ia~~l~~~p~ll~lDEP----------tsgLD~~~~~~i~~~l~~l~----~~g~tvi~t~hqp~   95 (437)
                      |+++.|-.+..+....|.+||+||+          +.|.|......+.++|+.+-    ..+..||.++|.|.
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~  165 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD  165 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence            6778888899999999999999999          34677666666666776663    35678999999974

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=95.16  E-value=0.0095  Score=64.95  Aligned_cols=80  Identities=20%  Similarity=0.254  Sum_probs=61.6

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCEEEEE-ecCCchHHHhhcCeEEEEe
Q 013741           32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTS-GLDSASAFFVIQVLKCIALDGRIVVCS-IHQPSSHLFYLFDDLLLLS  109 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPts-gLD~~~~~~i~~~l~~l~~~g~tvi~t-~hqp~~~i~~~fd~v~~L~  109 (437)
                      +.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.+...+.+++++| +|++ ..+.+.+++.-++.
T Consensus       188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~~vi~  266 (773)
T 2xau_A          188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDAPLLA  266 (773)
T ss_dssp             EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSCCEEE
T ss_pred             EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCCCccc
Confidence            34579999999999999999999999999996 999888777777776655566788885 7754 56777887544443


Q ss_pred             -CCe
Q 013741          110 -NGE  112 (437)
Q Consensus       110 -~G~  112 (437)
                       .|+
T Consensus       267 v~gr  270 (773)
T 2xau_A          267 VPGR  270 (773)
T ss_dssp             CCCC
T ss_pred             ccCc
Confidence             443

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=94.88  E-value=0.0026  Score=65.80  Aligned_cols=88  Identities=16%  Similarity=0.110  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHH----------HHHHHHHhCCC-EEEEeCCCCCCCHHHHHHH
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRL----------SISIEILTQPT-VLLLDEPTSGLDSASAFFV   73 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv----------~ia~~l~~~p~-ll~lDEPtsgLD~~~~~~i   73 (437)
                      |.++| .+.++..|+.+..+-.  ......+|+||++|.          .++..+...|. ++++||++.-+|.. ...+
T Consensus       242 EmerR-~~ll~~~Gv~~i~~yn--~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~  317 (512)
T 2ius_A          242 EMERR-YKLMSALGVRNLAGYN--EKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKV  317 (512)
T ss_dssp             HHHHH-HHHHHHTTCSSHHHHH--HHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHH
T ss_pred             HHHHH-HHHHHHcCCccHHHHH--HHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHH
Confidence            44444 3677888876554321  001124688887652          24445567887 78999999988843 3456


Q ss_pred             HHHHHHHHhc----CCEEEEEecCCch
Q 013741           74 IQVLKCIALD----GRIVVCSIHQPSS   96 (437)
Q Consensus        74 ~~~l~~l~~~----g~tvi~t~hqp~~   96 (437)
                      .+.+.++++.    |.++|+++|.|+.
T Consensus       318 ~~~l~~Lar~gRa~GI~LIlaTQrp~~  344 (512)
T 2ius_A          318 EELIARLAQKARAAGIHLVLATQRPSV  344 (512)
T ss_dssp             HHHHHHHHHHCGGGTEEEEEEESCCCT
T ss_pred             HHHHHHHHHHhhhCCcEEEEEecCCcc
Confidence            6666666553    6699999999983

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=94.37  E-value=0.063  Score=52.52  Aligned_cols=77  Identities=9%  Similarity=0.129  Sum_probs=53.8

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      |+.++...|.......+++.+..+   |     .||.+|.+|+..|...+.++++++.|+|...     ..++...++++
T Consensus        84 ms~~ql~~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l  150 (338)
T 4a1f_A           84 MSAEQLALRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKL  150 (338)
T ss_dssp             SCHHHHHHHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHH
Confidence            345555555555555555554433   2     5999999999999999999999999998654     34666777777


Q ss_pred             Hhc--CCEEEEE
Q 013741           81 ALD--GRIVVCS   90 (437)
Q Consensus        81 ~~~--g~tvi~t   90 (437)
                      .++  |..+|++
T Consensus       151 ~~~~gg~~lIVI  162 (338)
T 4a1f_A          151 KSQHKELGIAFI  162 (338)
T ss_dssp             HHHCTTEEEEEE
T ss_pred             HHhcCCCCEEEE
Confidence            663  5666665

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=93.61  E-value=0.1  Score=47.59  Aligned_cols=63  Identities=19%  Similarity=0.146  Sum_probs=48.6

Q ss_pred             HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHH
Q 013741           46 SIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKF  125 (437)
Q Consensus        46 a~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~  125 (437)
                      ..+++..+++++||     ||+.++.++.+.+.    ++.+|++++|++. ++.+   |+  +.+|    .++++++...
T Consensus       101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~-~l~~---Rl--~~rG----~~~~e~i~~r  161 (219)
T 1s96_A          101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKI-ELDR---RL--RGRG----QDSEEVIAKR  161 (219)
T ss_dssp             HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHH-HHHH---HH--HTTS----CSCHHHHHHH
T ss_pred             HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHH-HHHH---HH--HHcC----CCCHHHHHHH
Confidence            45667789999999     99999999999876    5899999999964 3433   43  6677    4777777665


Q ss_pred             HH
Q 013741          126 FA  127 (437)
Q Consensus       126 f~  127 (437)
                      +.
T Consensus       162 l~  163 (219)
T 1s96_A          162 MA  163 (219)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=93.48  E-value=0.31  Score=46.91  Aligned_cols=75  Identities=16%  Similarity=0.111  Sum_probs=47.8

Q ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEeCCCC----------------CCC--------------------H-HHHHHHHHHH
Q 013741           35 ISSGEKKRLSISIEILTQPTVLLLDEPTS----------------GLD--------------------S-ASAFFVIQVL   77 (437)
Q Consensus        35 lSgGerkRv~ia~~l~~~p~ll~lDEPts----------------gLD--------------------~-~~~~~i~~~l   77 (437)
                      ||++|++|+..|...+.++.+++.|+|..                |.+                    . ....++.+.|
T Consensus       134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~L  213 (315)
T 3bh0_A          134 FASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDL  213 (315)
T ss_dssp             HCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHH
Confidence            77788888777776666656666555532                111                    1 2234566777


Q ss_pred             HHHHh-cCCEEEEEecCCc------------------hHHHhhcCeEEEEe
Q 013741           78 KCIAL-DGRIVVCSIHQPS------------------SHLFYLFDDLLLLS  109 (437)
Q Consensus        78 ~~l~~-~g~tvi~t~hqp~------------------~~i~~~fd~v~~L~  109 (437)
                      +.+++ .|.+|+++.|...                  ..+.+.+|-|++|.
T Consensus       214 k~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi~L~  264 (315)
T 3bh0_A          214 KKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLY  264 (315)
T ss_dssp             HHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEEEEE
T ss_pred             HHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEEEEe
Confidence            88877 4778888877431                  23667788888876

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=93.34  E-value=0.0003  Score=70.63  Aligned_cols=67  Identities=12%  Similarity=0.106  Sum_probs=57.9

Q ss_pred             CC--CEEEEeCCCCCCCHHHHHHHHHHHHHH-HhcCCEEEEEecCCchHHHhhcCeEE-EEeCC-eEEEeeChhH
Q 013741           52 QP--TVLLLDEPTSGLDSASAFFVIQVLKCI-ALDGRIVVCSIHQPSSHLFYLFDDLL-LLSNG-ETIYFGDAKM  121 (437)
Q Consensus        52 ~p--~ll~lDEPtsgLD~~~~~~i~~~l~~l-~~~g~tvi~t~hqp~~~i~~~fd~v~-~L~~G-~~v~~G~~~~  121 (437)
                      +|  +++++|||+.++|.....+..+.++++ ++.|.|++  +|.. .++.++||++. +|.+| +.++.|+.++
T Consensus       139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~~  210 (392)
T 1ni3_A          139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWSN  210 (392)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred             CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCCH
Confidence            78  999999999999999999999999998 77777764  8885 57899999999 99999 9988887543

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=92.91  E-value=0.019  Score=58.29  Aligned_cols=69  Identities=13%  Similarity=0.159  Sum_probs=51.2

Q ss_pred             CCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEE-EeCCeEEEeeChh
Q 013741           52 QPTVLLLDEPTSGLDS-ASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLL-LSNGETIYFGDAK  120 (437)
Q Consensus        52 ~p~ll~lDEPtsgLD~-~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~-L~~G~~v~~G~~~  120 (437)
                      +|++|++||+..-.+. .+...+.+.+..+.+.|..+|+++|.|..++..+.+++.- +..|.++..++++
T Consensus       194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~  264 (440)
T 2z4s_A          194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD  264 (440)
T ss_dssp             TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred             CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence            8999999999877664 6777888999988888899999999876543333333332 4567777777664

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=92.36  E-value=0.015  Score=51.15  Aligned_cols=53  Identities=11%  Similarity=-0.126  Sum_probs=39.4

Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec
Q 013741           32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH   92 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~h   92 (437)
                      +..+|+|++||+.++|++.++|+++        +|+.....+.+.++.+...+..+|.+.+
T Consensus       107 ~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~~  159 (191)
T 1zp6_A          107 LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVSG  159 (191)
T ss_dssp             EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECTT
T ss_pred             eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECCC
Confidence            3469999999999999999999876        6887777777777665443334444443

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=92.29  E-value=0.17  Score=51.84  Aligned_cols=71  Identities=18%  Similarity=0.227  Sum_probs=49.9

Q ss_pred             cCCCCHHHHHHHHHHH--HHHh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCC
Q 013741           32 LRGISSGEKKRLSISI--EILT---------------QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP   94 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~--~l~~---------------~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp   94 (437)
                      .++.||||+|-.-+++  +++.               .-.++++||. +-+|...+...++.++++   |.-+|+++  |
T Consensus       377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiat--P  450 (483)
T 3euj_A          377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAA--P  450 (483)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEE--S
T ss_pred             cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEEC--c
Confidence            4679999999644333  3222               1247999999 999999999999999975   55555554  4


Q ss_pred             chHHHhhcCeEEEEe
Q 013741           95 SSHLFYLFDDLLLLS  109 (437)
Q Consensus        95 ~~~i~~~fd~v~~L~  109 (437)
                      . .+....|.++.+-
T Consensus       451 ~-~i~p~v~~~~~~~  464 (483)
T 3euj_A          451 E-NISPERGTTYKLV  464 (483)
T ss_dssp             S-SCCCSSSEEEECC
T ss_pred             c-hhhhccCceEEEE
Confidence            3 4555567777664

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=91.55  E-value=0.15  Score=45.80  Aligned_cols=72  Identities=18%  Similarity=0.071  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHH--hCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741           40 KKRLSISIEIL--TQPTVLLLDEPTSG--LDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        40 rkRv~ia~~l~--~~p~ll~lDEPtsg--LD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~  112 (437)
                      ++.+..++..+  .+.++++|||.+..  ++-....++.+.|.+ +.++..||+|...|..++.+++|-|--|..-+
T Consensus       106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vk  181 (196)
T 1g5t_A          106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRPVK  181 (196)
T ss_dssp             HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence            44566677778  56799999999762  333445567777764 23678999999999999999999998886533

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=91.47  E-value=0.2  Score=48.18  Aligned_cols=60  Identities=7%  Similarity=0.123  Sum_probs=42.6

Q ss_pred             HHHHHHHcCCcccccccccCcccCCCCHHHHHHH---HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741           10 VEETIIKMGLQACAETKIGNWHLRGISSGEKKRL---SISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus        10 v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv---~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      .+.+.+..|+..          ....|||+.+++   ++++++..+|+++++|||..   ......+++.|+++.+
T Consensus       151 L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~~  213 (306)
T 1vma_A          151 LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVHR  213 (306)
T ss_dssp             HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHHH
Confidence            344556666542          124689999999   89999999999999999974   3445566666666543

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=91.47  E-value=0.37  Score=45.99  Aligned_cols=46  Identities=13%  Similarity=0.109  Sum_probs=38.1

Q ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHH
Q 013741           36 SSGEKKRLSISIEILTQPTVLLLDEP-TSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus        36 SgGerkRv~ia~~l~~~p~ll~lDEP-tsgLD~~~~~~i~~~l~~l~   81 (437)
                      ...+.+|..++.+...+++++++||| +.|+|.....++.+..+.+.
T Consensus       164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~  210 (295)
T 1ls1_A          164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG  210 (295)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC
Confidence            44566788898888899999999999 99999888888877776653

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=90.90  E-value=0.13  Score=49.19  Aligned_cols=70  Identities=10%  Similarity=0.153  Sum_probs=45.7

Q ss_pred             HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---hcCCEEEE-EecCCchHHHhhcCeEEEEeCCeEEEe
Q 013741           44 SISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA---LDGRIVVC-SIHQPSSHLFYLFDDLLLLSNGETIYF  116 (437)
Q Consensus        44 ~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~---~~g~tvi~-t~hqp~~~i~~~fd~v~~L~~G~~v~~  116 (437)
                      ..+.+.+.+|+++++|  |+|+|+.....+.++.+-+.   ..+.++++ ++|.. .++.+.+|++..+..|.++..
T Consensus       174 ~~al~~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt  247 (296)
T 2px0_A          174 QQAKELFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT  247 (296)
T ss_dssp             HHHHHHGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred             HHHHHHhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence            3344456999999999  99999877655544443332   23345555 46764 567777887766666777763

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=90.60  E-value=0.072  Score=52.52  Aligned_cols=68  Identities=18%  Similarity=0.093  Sum_probs=52.9

Q ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741           36 SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        36 SgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~  112 (437)
                      +++...|..|+.++..+|+.+++||++.       .+..+.|+.+.....|++.++|..+  ....+||+..+.+|.
T Consensus       236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~  303 (361)
T 2gza_A          236 NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN  303 (361)
T ss_dssp             ---CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred             ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence            4677889999999999999999999985       3455677777665668899999964  677889999887664

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=90.24  E-value=0.2  Score=49.26  Aligned_cols=29  Identities=14%  Similarity=0.259  Sum_probs=22.7

Q ss_pred             CCCHHHHHHHHHHHHH---Hh--CCCEEEEeCCC
Q 013741           34 GISSGEKKRLSISIEI---LT--QPTVLLLDEPT   62 (437)
Q Consensus        34 ~lSgGerkRv~ia~~l---~~--~p~ll~lDEPt   62 (437)
                      .+|+||++|..++++|   ..  +++++++|||+
T Consensus       296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~  329 (365)
T 1lw7_A          296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS  329 (365)
T ss_dssp             -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            4899999999999999   77  89999999997

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=88.33  E-value=0.53  Score=45.98  Aligned_cols=60  Identities=10%  Similarity=0.101  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe--cCC
Q 013741           33 RGISSGEKKRLSISIEILTQPTVLLLD-EPTSGLDSASAFFVIQVLKCIALDGRIVVCSI--HQP   94 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l~~~p~ll~lD-EPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~--hqp   94 (437)
                      ..+|+||++++. +.....++-++++| +|+.|+|......+.+.+++... +.++|++.  |+.
T Consensus       230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl  292 (357)
T 2e87_A          230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV  292 (357)
T ss_dssp             TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred             hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence            357899988876 55555677788999 99999999998888887776554 66777666  553

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=87.34  E-value=1.4  Score=41.31  Aligned_cols=73  Identities=15%  Similarity=0.214  Sum_probs=45.6

Q ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----cCCEEEEEecCCc---hHH
Q 013741           36 SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA----------SAFFVIQVLKCIAL----DGRIVVCSIHQPS---SHL   98 (437)
Q Consensus        36 SgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~----------~~~~i~~~l~~l~~----~g~tvi~t~hqp~---~~i   98 (437)
                      +++++.|..++.+...+|.++++||+.+-++..          ....++..+.....    .+..+|.+++.|.   ..+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l  176 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA  176 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence            467778888888888899999999998776532          22234444443321    2346777888753   334


Q ss_pred             HhhcCeEEEE
Q 013741           99 FYLFDDLLLL  108 (437)
Q Consensus        99 ~~~fd~v~~L  108 (437)
                      .+-||+.+.+
T Consensus       177 ~~R~~~~i~~  186 (297)
T 3b9p_A          177 LRRFTKRVYV  186 (297)
T ss_dssp             HHHCCEEEEC
T ss_pred             HhhCCeEEEe
Confidence            4556655443

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=85.27  E-value=1.7  Score=39.64  Aligned_cols=53  Identities=26%  Similarity=0.350  Sum_probs=43.5

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEec---------CCchHHHhhcCeEEEEe
Q 013741           52 QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH---------QPSSHLFYLFDDLLLLS  109 (437)
Q Consensus        52 ~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~h---------qp~~~i~~~fd~v~~L~  109 (437)
                      +|+++++||--. |+.    .+++.++.+++.|.+||++-|         .++.++..++|+|.-|.
T Consensus        89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~  150 (223)
T 2b8t_A           89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT  150 (223)
T ss_dssp             TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred             CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence            489999999964 553    466677777878999999999         67788999999999875

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=84.94  E-value=0.016  Score=51.94  Aligned_cols=54  Identities=17%  Similarity=0.229  Sum_probs=39.6

Q ss_pred             HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEEeC
Q 013741           48 EILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        48 ~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~  110 (437)
                      .++.+|++++|||+|+++|..+...+.+.|++..++    +...|.+     ..+|.++++++
T Consensus       120 ~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~  173 (198)
T 1lvg_A          120 IFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD  173 (198)
T ss_dssp             EEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred             EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence            566677777888889999999999999998887654    1223522     46899877753

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=83.98  E-value=0.33  Score=42.52  Aligned_cols=38  Identities=16%  Similarity=0.126  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 013741           40 KKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC   79 (437)
Q Consensus        40 rkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~   79 (437)
                      .++..+|++++.+|+++++|  ||++|..+..++.+.|.+
T Consensus       151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            34578899999999999999  999999999999998865

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=80.74  E-value=7.4  Score=38.94  Aligned_cols=60  Identities=12%  Similarity=0.045  Sum_probs=41.6

Q ss_pred             hCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHh-cCCEEEEEecCCc------------------hHHHhh
Q 013741           51 TQPTVLLLDEPTSGLDS----------ASAFFVIQVLKCIAL-DGRIVVCSIHQPS------------------SHLFYL  101 (437)
Q Consensus        51 ~~p~ll~lDEPtsgLD~----------~~~~~i~~~l~~l~~-~g~tvi~t~hqp~------------------~~i~~~  101 (437)
                      .+|+++++|..+.=.+.          ....++.+.||.+++ .+.+||++.|-..                  ..+.+.
T Consensus       309 ~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~  388 (444)
T 2q6t_A          309 NQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQD  388 (444)
T ss_dssp             SCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGG
T ss_pred             cCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHh
Confidence            47999999998653322          123577888999988 5888888887321                  135667


Q ss_pred             cCeEEEEeC
Q 013741          102 FDDLLLLSN  110 (437)
Q Consensus       102 fd~v~~L~~  110 (437)
                      +|.|++|..
T Consensus       389 aD~vi~L~r  397 (444)
T 2q6t_A          389 ADLVMFIYR  397 (444)
T ss_dssp             CSEEEEEEE
T ss_pred             CCEEEEEec
Confidence            888888863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	437
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	1e-13
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	3e-11
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	3e-11
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	3e-10
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	6e-10
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	8e-10
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	1e-09
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	2e-09
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	9e-09
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	2e-08
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	2e-08
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	9e-08
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	2e-07
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	2e-07
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	5e-07
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	1e-06
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	1e-05
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	3e-05
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	1e-04
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	1e-04
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-04
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	0.003

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.4 bits (167), Expect = 1e-13
 Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 3/114 (2%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
             +    +             T +G   +  +S G++ R+S++  +     + LLD P  
Sbjct: 129 KSVVKACQLQQDITKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFG 187

Query: 64  GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
            LD  +   V +   C  +  +  +    +         D +L+L  G + ++G
Sbjct: 188 YLDVFTEEQVFESCVCKLMANKTRILVTSKMEH--LRKADKILILHQGSSYFYG 239

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 61.2 bits (148), Expect = 3e-11
 Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 6/120 (5%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
            ++ EI ++VE      GL    + ++  +     S G  ++L I+  ++  P + +LDE
Sbjct: 105 SSSSEIEEMVERATEIAGLGEKIKDRVSTY-----SKGMVRKLLIARALMVNPRLAILDE 159

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           PTSGLD  +A  V ++LK  + +G  ++ S H     + +L D + L+ NG  +  G  +
Sbjct: 160 PTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVE 218

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 61.1 bits (148), Expect = 3e-11
 Identities = 23/117 (19%), Positives = 51/117 (43%), Gaps = 6/117 (5%)

Query: 4   DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
           +E+ +   + +  + L    + K G      +S G+ K + I   ++T P ++++DEP +
Sbjct: 125 EEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIA 179

Query: 64  GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           G+    A  +   +  +   G   +   H+    +    D L ++ NG+ I  G  +
Sbjct: 180 GVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRGE 235

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 57.9 bits (140), Expect = 3e-10
 Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 7/121 (5%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           M+ +E      E +    L    E +  N     +S G+++R++I+  +   P ++L D+
Sbjct: 116 MSGEERRKRALECLKMAEL----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQ 171

Query: 61  PTSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119
           PT  LDS +   ++Q+LK +  + G+ VV   H  +  +    + ++ L +GE       
Sbjct: 172 PTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKL 229

Query: 120 K 120
           +
Sbjct: 230 R 230

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 57.1 bits (138), Expect = 6e-10
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 7/121 (5%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
              DEI+  V      + ++              +S G+++R++++  I+ +P VLL+DE
Sbjct: 108 FPKDEIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDE 162

Query: 61  PTSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119
           P S LD+     +   +K +        +   H        + D + +++ G+ +  G  
Sbjct: 163 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSP 221

Query: 120 K 120
            
Sbjct: 222 T 222

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 56.8 bits (137), Expect = 8e-10
 Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 5/120 (4%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           ++  +  +   + + K+G+   A+ K    +   +S G+++R+SI+  +  +P VLL DE
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGK----YPVHLSGGQQQRVSIARALAMEPDVLLFDE 175

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           PTS LD      V+++++ +A +G+ +V   H+      ++   ++ L  G+    GD +
Sbjct: 176 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQGKIEEEGDPE 234

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           +S G+++R++I+  +L    +L+LDE TS LD+ S   +   L  +    R  +   H+ 
Sbjct: 153 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRL 211

Query: 95  SSHLFYLFDDLLLLSNGETIYFG 117
           S+      D+++++ +G  +  G
Sbjct: 212 STIE--QADEIVVVEDGIIVERG 232

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 24  ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83
           +T++G   ++ +S G+K+RLSI+   L  P +L+LDE TS LD  S   + + L  ++  
Sbjct: 145 DTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-K 202

Query: 84  GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
            R  +   H+ S+      D ++++ NG  +  G
Sbjct: 203 DRTTLIVAHRLST--ITHADKIVVIENGHIVETG 234

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 53.4 bits (128), Expect = 9e-09
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 4   DEINDIVEETIIKM-GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPT 62
           + I   +E        L+   +   G      +S GE++ L+I   ++++P +L++DEP+
Sbjct: 113 EGIKRDLEWIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPS 167

Query: 63  SGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
            GL       V +V++ I  +G  ++            +     +L  G+ +  G A 
Sbjct: 168 LGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKAS 224

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 7/121 (5%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
              DE+   V E +  +GL    ++   N     +S G+K+R++I+  + + P VLL DE
Sbjct: 112 TPKDEVKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDE 166

Query: 61  PTSGLDSASAFFVIQVLK-CIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119
            TS LD A+   ++++LK      G  ++   H+    +  + D + ++SNGE I     
Sbjct: 167 ATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTV 225

Query: 120 K 120
            
Sbjct: 226 S 226

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 13/123 (10%)

Query: 5   EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEIL-------TQPTVLL 57
              +++ +    + L               +S GE +R+ ++  +L           +LL
Sbjct: 101 TRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLL 155

Query: 58  LDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
           LDEP + LD A    + ++L  +   G  +V S H   +H         LL  G+ +  G
Sbjct: 156 LDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASG 214

Query: 118 DAK 120
             +
Sbjct: 215 RRE 217

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 49.9 bits (119), Expect = 9e-08
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 36  SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
           S G  +R+ ++  +L    + +LD+P   +D  S   V++ +  I  +  IV+ S  +
Sbjct: 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 184

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 29  NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVV 88
                G+S G+++R++I+  ++  P +L+ DE TS LD  S   +++ +  I   GR V+
Sbjct: 134 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVI 192

Query: 89  CSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
              H+ S       D ++++  G+ +  G  K
Sbjct: 193 IIAHRLS--TVKNADRIIVMEKGKIVEQGKHK 222

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 17  MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQV 76
            GL    +T++       +S G+++ ++++  ++ +P VL+LD+ TS LD+ S   V Q+
Sbjct: 135 SGLPQGYDTEVDE-AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQL 193

Query: 77  LKCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117
           L        R V+      S  L    D +L L  G     G
Sbjct: 194 LYESPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGG 233

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 35  ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
           IS G+++RL+I+   L  P +L+LDE T+ LDS S   V + L  +   GR  +   H+ 
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL 198

Query: 95  SSHLFYLFDDLLLLSNGETIYFG 117
           S+      D +  +  G+    G
Sbjct: 199 ST--IVDADKIYFIEKGQITGSG 219

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 7/121 (5%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           +   EI+  V E    +GL     T++ N   R +S G+++R+++   I+ +P V L+DE
Sbjct: 111 VPRQEIDQRVREVAELLGL-----TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDE 165

Query: 61  PTSGLDSASAFFVIQVLKCIA-LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119
           P S LD+     +   LK +    G   +   H        + D + +++ G     G  
Sbjct: 166 PLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSP 224

Query: 120 K 120
            
Sbjct: 225 D 225

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
              + IN  V +    + L    + K        +S G+++R++I   ++ +P+V LLDE
Sbjct: 102 AKKEVINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDE 156

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           P S LD+A    +   +  +       +  +         L D +++L  G     G   
Sbjct: 157 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL 216

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 10  VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
           V +T   + ++   +           S GE++R++++  ++T P +LLLDEP S LD  +
Sbjct: 108 VLDTARDLKIEHLLDRNPLTL-----SGGEQQRVALARALVTNPKILLLDEPLSALDPRT 162

Query: 70  AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
                ++L  +    ++ V  I    +    + D + ++ +G+ I  G  +
Sbjct: 163 QENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPE 213

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 7/121 (5%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           M+ +EI   VEE    + +         N   R +S  +++R++++  ++  P++LLLDE
Sbjct: 112 MSKEEIRKRVEEVAKILDIHHVL-----NHFPRELSGAQQQRVALARALVKDPSLLLLDE 166

Query: 61  PTSGLDSASAFFVIQVLKCIA-LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119
           P S LD+        ++K +    G  ++   H P+  +F + D + +L  G+ +  G  
Sbjct: 167 PFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKP 225

Query: 120 K 120
           +
Sbjct: 226 E 226

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 5/120 (4%)

Query: 1   MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
           +   E +  V E   K+G+    + K         S GE++R++++  ++ QP +LLLDE
Sbjct: 98  VERVERDRRVREMAEKLGIAHLLDRKPARL-----SGGERQRVALARALVIQPRLLLLDE 152

Query: 61  PTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120
           P S +D  +   +++ L+ +  +  + +  +         L D++ ++ NG  +  G  K
Sbjct: 153 PLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLK 212

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	437
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.95
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.95
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.95
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.95
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.95
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.95
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.94
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.94
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.94
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.94
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.94
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.94
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.92
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.91
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.9
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.9
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.9
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.9
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.87
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.73
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.51
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.23
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.81
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.08
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.0
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.36
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	93.62
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	91.76

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.95  E-value=2.7e-28  Score=227.39  Aligned_cols=116  Identities=24%  Similarity=0.369  Sum_probs=108.1

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.+++|+++++.+||++.+|.+.     +.|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++.
T Consensus       112 ~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~  186 (240)
T d1g2912         112 PRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ  186 (240)
T ss_dssp             CHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHH
Confidence            57788899999999999998777655     5799999999999999999999999999999999999999999999998


Q ss_pred             hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ++ |.|||+++|++ .++.++|||+++|++|+++..|+++++.
T Consensus       187 ~~~g~tvi~vTHd~-~~~~~~~drv~vm~~G~iv~~G~~~el~  228 (240)
T d1g2912         187 RQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVY  228 (240)
T ss_dssp             HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             hccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            75 99999999996 5799999999999999999999999875

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.95  E-value=2.6e-28  Score=227.43  Aligned_cols=118  Identities=24%  Similarity=0.383  Sum_probs=108.7

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +++++.+++++++++.+||++.+|...     ..|||||||||+|||+|+.+|++|+|||||+|||+.++.++++.|+++
T Consensus       112 ~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l  186 (242)
T d1oxxk2         112 MSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV  186 (242)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhcChHhhhhCCh-----hhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHH
Confidence            357788899999999999998777655     469999999999999999999999999999999999999999999999


Q ss_pred             Hh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      .+ .|.|+|+++|++ .++.++|||+++|++|+++..|+++++.+
T Consensus       187 ~~~~g~tvi~vTHd~-~~~~~~~dri~vm~~G~iv~~g~~~el~~  230 (242)
T d1oxxk2         187 QSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLYD  230 (242)
T ss_dssp             HHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HhccCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            76 599999999997 47899999999999999999999998753

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.95  E-value=3e-28  Score=226.77  Aligned_cols=117  Identities=20%  Similarity=0.309  Sum_probs=108.4

Q ss_pred             CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         1 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +++++.+++++++++.+||++.+|...     ..|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++
T Consensus       108 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l  182 (239)
T d1v43a3         108 FPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL  182 (239)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHH
Confidence            367888899999999999998777654     579999999999999999999999999999999999999999999999


Q ss_pred             Hh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ++ .|.|+|+++|++ .++.++|||+++|++|+++..|+++++.
T Consensus       183 ~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~  225 (239)
T d1v43a3         183 QQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVY  225 (239)
T ss_dssp             HHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            77 599999999997 5799999999999999999999999874

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.95  E-value=5.1e-28  Score=224.94  Aligned_cols=117  Identities=24%  Similarity=0.336  Sum_probs=108.3

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++++++++++++.+||++.+|...     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.+++++
T Consensus        99 ~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~  173 (240)
T d2onka1          99 ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ  173 (240)
T ss_dssp             CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHH
Confidence            56778889999999999998877655     5799999999999999999999999999999999999999999999998


Q ss_pred             h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      + .|.|+|+++|++ .++.++|||+++|++|+++..|+++++.+
T Consensus       174 ~~~g~tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~~~el~~  216 (240)
T d2onka1         174 REFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS  216 (240)
T ss_dssp             HHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence            7 499999999997 57999999999999999999999998853

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=4.8e-28  Score=224.60  Aligned_cols=117  Identities=24%  Similarity=0.377  Sum_probs=88.9

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.+++++++++.++|.+.+|..+     +.|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|+++.
T Consensus       103 ~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~  177 (232)
T d2awna2         103 KKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH  177 (232)
T ss_dssp             --CHHHHHHHHHHHHC--------------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence            45678889999999999998887765     4699999999999999999999999999999999999999999999997


Q ss_pred             h-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        82 ~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      + .|.|+|+++|++ .++.++|||+++|++|+++..|+++++.+
T Consensus       178 ~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~~  220 (232)
T d2awna2         178 KRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH  220 (232)
T ss_dssp             HHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence            6 699999999996 57999999999999999999999998854

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=6.3e-28  Score=224.91  Aligned_cols=115  Identities=29%  Similarity=0.390  Sum_probs=106.9

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.+++++++++.+||++.+|...     +.|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|+++.
T Consensus       113 ~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~  187 (240)
T d3dhwc1         113 PKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN  187 (240)
T ss_dssp             CTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHH
Confidence            56788899999999999998776655     5799999999999999999999999999999999999999999999998


Q ss_pred             hc-CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHH
Q 013741           82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA  122 (437)
Q Consensus        82 ~~-g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~  122 (437)
                      ++ |.|+|+++|++ .++.++|||+++|++|++++.|+++++
T Consensus       188 ~~~g~tvi~vTHdl-~~~~~~~dri~vl~~G~iv~~G~~~ei  228 (240)
T d3dhwc1         188 RRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEV  228 (240)
T ss_dssp             HHHCCEEEEEBSCH-HHHHHHCSEEEEEETTEEEEEEETTTT
T ss_pred             hccCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            85 99999999996 578899999999999999999999976

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=5.6e-27  Score=219.06  Aligned_cols=118  Identities=28%  Similarity=0.418  Sum_probs=110.4

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.+++++.+++.++|++..+.+++     .||||||||++||++|+++|++|+|||||+|||+.++.++.+.+++++
T Consensus       106 ~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~  180 (238)
T d1vpla_         106 SSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS  180 (238)
T ss_dssp             CHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCHHHHhhhhh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence            456778899999999999999888775     599999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHHH
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKF  125 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~~  125 (437)
                      ++|+|||+++|++ .++..+|||+++|++|++++.|+++++.+.
T Consensus       181 ~~g~tii~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el~~~  223 (238)
T d1vpla_         181 QEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKER  223 (238)
T ss_dssp             HTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence            9999999999997 579999999999999999999999998764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.94  E-value=4e-27  Score=217.73  Aligned_cols=111  Identities=22%  Similarity=0.340  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCC
Q 013741            7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGR   85 (437)
Q Consensus         7 ~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~   85 (437)
                      +++++++++.++|++.+|..+     ..|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++ .|.
T Consensus       105 ~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~  179 (229)
T d3d31a2         105 PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL  179 (229)
T ss_dssp             HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcchhhHhCCh-----hhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            468999999999999887765     46999999999999999999999999999999999999999999999976 599


Q ss_pred             EEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        86 tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      |||+++|++ .++.++|||+++|++|+++..|+++++.
T Consensus       180 tii~vtHd~-~~~~~~~drv~vm~~G~iv~~g~~~el~  216 (229)
T d3d31a2         180 TVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF  216 (229)
T ss_dssp             EEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred             EEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            999999997 4799999999999999999999999874

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.94  E-value=1e-26  Score=219.68  Aligned_cols=118  Identities=24%  Similarity=0.367  Sum_probs=106.7

Q ss_pred             CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA   81 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~   81 (437)
                      ++++.++++.++++.+||.+..+    +.++..|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|++++
T Consensus       121 ~~~~~~~~~~~~l~~~~l~~~~~----~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~  196 (258)
T d1b0ua_         121 SKHDARERALKYLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA  196 (258)
T ss_dssp             CHHHHHHHHHHHHHHTTCCHHHH----TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCchhhh----ccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhc
Confidence            56778889999999999976432    22345799999999999999999999999999999999999999999999999


Q ss_pred             hcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        82 ~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      ++|.|+|+++|++ .++.++|||+++|++|++++.|+++++.+
T Consensus       197 ~~g~til~vtHdl-~~~~~~adri~vm~~G~iv~~g~~~ev~~  238 (258)
T d1b0ua_         197 EEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQVFG  238 (258)
T ss_dssp             HTTCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             ccCCceEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9999999999997 47899999999999999999999998753

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=1e-26  Score=219.63  Aligned_cols=115  Identities=21%  Similarity=0.342  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 013741            4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD   83 (437)
Q Consensus         4 ~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~   83 (437)
                      ++..++++++++.+++.+.+|+.++     .|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++++
T Consensus       125 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~  199 (254)
T d1g6ha_         125 EEMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK  199 (254)
T ss_dssp             HHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCcchhccCchh-----hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHC
Confidence            4556789999999999998888776     59999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        84 g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      |.|||+++|+.. ++.++||||++|++|+++..|+++|..+
T Consensus       200 g~til~vsHdl~-~~~~~~Drv~vm~~G~iv~~g~~~e~~~  239 (254)
T d1g6ha_         200 GITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEEEIK  239 (254)
T ss_dssp             TCEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred             CCEEEEEeCcHH-HHHHhCCEEEEEeCCEEEEEecHHHHhh
Confidence            999999999975 7899999999999999999999987643

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=1.2e-26  Score=215.04  Aligned_cols=111  Identities=24%  Similarity=0.362  Sum_probs=99.1

Q ss_pred             CHHHHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            2 TNDEINDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         2 ~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +.+++.+++.+.++.+||.+ .+|.     ++..|||||||||+||++|+.+|++|+|||||+|||+.++.++++.|+++
T Consensus       117 ~~~~~~~~~~~~l~~~~L~~~~~~~-----~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l  191 (230)
T d1l2ta_         117 SGEERRKRALECLKMAELEERFANH-----KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL  191 (230)
T ss_dssp             CHHHHHHHHHHHHHHTTCCGGGTTC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhchhhhhhcC-----ChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHH
Confidence            45677788999999999975 3444     45679999999999999999999999999999999999999999999999


Q ss_pred             Hh-cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeCh
Q 013741           81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA  119 (437)
Q Consensus        81 ~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~  119 (437)
                      ++ .|.|+|+++|++. . .++|||+++|++|+++..|++
T Consensus       192 ~~~~g~tii~vTHd~~-~-a~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         192 NEEDGKTVVVVTHDIN-V-ARFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             HHTTCCEEEEECSCHH-H-HTTSSEEEEEETTEEEEEEEC
T ss_pred             HHhhCCEEEEECCCHH-H-HHhCCEEEEEECCEEEEeccC
Confidence            87 5999999999974 4 489999999999999999864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.94  E-value=1.1e-26  Score=217.39  Aligned_cols=114  Identities=21%  Similarity=0.306  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHc-CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 013741            4 DEINDIVEETIIKM-GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL   82 (437)
Q Consensus         4 ~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~   82 (437)
                      ++.++.++++++.+ +|++.+|..++     .|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|+++++
T Consensus       113 ~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~  187 (240)
T d1ji0a_         113 EGIKRDLEWIFSLFPRLKERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ  187 (240)
T ss_dssp             SHHHHHHHHHHHHCHHHHTTTTSBSS-----SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhChHHHHhCchh-----hCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh
Confidence            44556778888877 68888877665     5999999999999999999999999999999999999999999999999


Q ss_pred             cCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        83 ~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      +|.|||+++|+. .++.++|||+++|++|++++.|+++++.
T Consensus       188 ~g~til~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el~  227 (240)
T d1ji0a_         188 EGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL  227 (240)
T ss_dssp             TTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred             CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence            999999999996 5789999999999999999999999874

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.1e-25  Score=209.64  Aligned_cols=113  Identities=22%  Similarity=0.329  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh-------CCCEEEEeCCCCCCCHHHHHHHHHHH
Q 013741            5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILT-------QPTVLLLDEPTSGLDSASAFFVIQVL   77 (437)
Q Consensus         5 ~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~-------~p~ll~lDEPtsgLD~~~~~~i~~~l   77 (437)
                      .+.++++++++.++|.+..+..++     .|||||||||+||++|+.       +|+||+|||||+|||+.++..+.+.|
T Consensus       101 ~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i  175 (231)
T d1l7vc_         101 TRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL  175 (231)
T ss_dssp             TCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCHhHhCcChh-----hcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence            445788999999999988776654     699999999999999997       77999999999999999999999999


Q ss_pred             HHHHhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHH
Q 013741           78 KCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV  123 (437)
Q Consensus        78 ~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~  123 (437)
                      ++++++|.|||+++|++ .++.++|||+++|++|++++.|+++++.
T Consensus       176 ~~l~~~g~tii~vtHdl-~~~~~~~dri~vl~~G~iv~~G~~~ev~  220 (231)
T d1l7vc_         176 SALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEVL  220 (231)
T ss_dssp             HHHHHTTCEEEECCCCH-HHHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred             HHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEECCHHHHh
Confidence            99999999999999997 4799999999999999999999998873

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.91  E-value=1.7e-24  Score=203.93  Aligned_cols=113  Identities=23%  Similarity=0.307  Sum_probs=96.6

Q ss_pred             HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         8 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      ++++++++..++.+       -.||.+|. .+..|||||||||+|||+|+.+|+||+||||||+||+.+...+++.|+++
T Consensus       120 ~~i~~a~~~~~l~~~i~~l~~gl~t~~~~-~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l  198 (253)
T d3b60a1         120 EQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL  198 (253)
T ss_dssp             HHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHhccccchhhhcC-CCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHh
Confidence            34555555555443       24677764 46789999999999999999999999999999999999999999999998


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      .+ ++|+|+++|+++ . .+.||+|++|++|+++..|+++++.+
T Consensus       199 ~~-~~Tvi~itH~l~-~-~~~~D~v~vl~~G~Iv~~G~~~eLl~  239 (253)
T d3b60a1         199 QK-NRTSLVIAHRLS-T-IEQADEIVVVEDGIIVERGTHSELLA  239 (253)
T ss_dssp             HT-TSEEEEECSCGG-G-TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cc-CCEEEEEECCHH-H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence            75 799999999985 3 46799999999999999999998864

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=7.6e-24  Score=197.89  Aligned_cols=101  Identities=26%  Similarity=0.458  Sum_probs=90.1

Q ss_pred             cccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHH
Q 013741           20 QACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLF   99 (437)
Q Consensus        20 ~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~   99 (437)
                      ..-.+|.+|. ....|||||||||+|||+|+.+|+||+||||||+||+.+...+++.|+++.+ |+|+|+++|+++  ..
T Consensus       126 ~~~~~t~i~~-~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~  201 (241)
T d2pmka1         126 REGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TV  201 (241)
T ss_dssp             TTGGGSBCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GG
T ss_pred             hcchhhhcCC-CCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHH--HH
Confidence            3455666764 4578999999999999999999999999999999999999999999999865 799999999985  34


Q ss_pred             hhcCeEEEEeCCeEEEeeChhHHHH
Q 013741          100 YLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus       100 ~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      +.||+|++|++|+++..|+++++.+
T Consensus       202 ~~~D~i~vl~~G~Iv~~G~~~ell~  226 (241)
T d2pmka1         202 KNADRIIVMEKGKIVEQGKHKELLS  226 (241)
T ss_dssp             TTSSEEEEEETTEEEEEECHHHHHH
T ss_pred             HhCCEEEEEECCEEEEECCHHHHHh
Confidence            7799999999999999999998854

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6e-24  Score=199.99  Aligned_cols=104  Identities=26%  Similarity=0.345  Sum_probs=92.4

Q ss_pred             CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCch
Q 013741           18 GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPSS   96 (437)
Q Consensus        18 ~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~~   96 (437)
                      +|.+-.++.++. .+..|||||||||+|||+|+.+|+|++||||||+||+.+..++++.|+++.+ .|+|+|+++|+++ 
T Consensus       136 ~l~~g~~~~i~~-~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~-  213 (251)
T d1jj7a_         136 GLPQGYDTEVDE-AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS-  213 (251)
T ss_dssp             TSTTGGGCBCCS-SCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH-
T ss_pred             hccccchhhHhc-cCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH-
Confidence            344556777764 5668999999999999999999999999999999999999999999999876 5899999999974 


Q ss_pred             HHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           97 HLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        97 ~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                       ..+.||||++|++|+++..|+++++.+
T Consensus       214 -~~~~aDrI~vl~~G~iv~~Gt~~eLl~  240 (251)
T d1jj7a_         214 -LVEQADHILFLEGGAIREGGTHQQLME  240 (251)
T ss_dssp             -HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             -HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence             456799999999999999999998864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.90  E-value=1.3e-23  Score=197.79  Aligned_cols=113  Identities=27%  Similarity=0.382  Sum_probs=97.6

Q ss_pred             HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 013741            8 DIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI   80 (437)
Q Consensus         8 ~~v~~~l~~l~L~~-------~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l   80 (437)
                      +.+.++++..++.+       -.||.+|. ....||||||||++|||+|+.+|++|+||||||+||+.+...+++.|+++
T Consensus       122 ~~~~~al~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l  200 (255)
T d2hyda1         122 EEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL  200 (255)
T ss_dssp             HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHhccccccchhcC-CCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence            45566666666543       45677775 45679999999999999999999999999999999999999999999998


Q ss_pred             HhcCCEEEEEecCCchHHHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        81 ~~~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      .+ ++|+|+++|+++  ....||+|++|++|+++..|+++++.+
T Consensus       201 ~~-~~TvI~itH~~~--~~~~~D~ii~l~~G~iv~~G~~~eLl~  241 (255)
T d2hyda1         201 SK-DRTTLIVAHRLS--TITHADKIVVIENGHIVETGTHRELIA  241 (255)
T ss_dssp             TT-TSEEEEECSSGG--GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             hc-CCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            75 789999999985  347799999999999999999998864

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.90  E-value=4e-24  Score=200.14  Aligned_cols=101  Identities=29%  Similarity=0.434  Sum_probs=90.1

Q ss_pred             cccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHH
Q 013741           20 QACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLF   99 (437)
Q Consensus        20 ~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~   99 (437)
                      .+..++.+|. ....|||||||||+|||+|+.+|+||+||||||+||+.++.++++.|++++ +|+|+|+++|+++ .+ 
T Consensus       126 ~~~~~~~i~~-~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~-~~-  201 (242)
T d1mv5a_         126 PDQLNTEVGE-RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-  201 (242)
T ss_dssp             TTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-
T ss_pred             cccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH-HH-
Confidence            3456677764 456799999999999999999999999999999999999999999999997 4899999999974 34 


Q ss_pred             hhcCeEEEEeCCeEEEeeChhHHHH
Q 013741          100 YLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus       100 ~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      ..||||++|++|++++.|+++++.+
T Consensus       202 ~~~D~i~vl~~G~iv~~G~~~eLl~  226 (242)
T d1mv5a_         202 VDADKIYFIEKGQITGSGKHNELVA  226 (242)
T ss_dssp             HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred             HhCCEEEEEECCEEEEECCHHHHHh
Confidence            5699999999999999999998864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=9.1e-23  Score=194.91  Aligned_cols=104  Identities=18%  Similarity=0.298  Sum_probs=88.1

Q ss_pred             CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Q 013741           18 GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH   97 (437)
Q Consensus        18 ~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~   97 (437)
                      .+.+..++.+|. ....|||||||||+|||+|+.+|+||+|||||+|||+.+..++++.+.....+++|+|+++|++.  
T Consensus       143 ~l~~~~~~~~~~-~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~--  219 (281)
T d1r0wa_         143 KFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKME--  219 (281)
T ss_dssp             TSTTGGGCEECT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHH--
T ss_pred             hchhhhhhhhhh-hccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHH--
Confidence            344455666653 45579999999999999999999999999999999999999999865444456899999999973  


Q ss_pred             HHhhcCeEEEEeCCeEEEeeChhHHHH
Q 013741           98 LFYLFDDLLLLSNGETIYFGDAKMAVK  124 (437)
Q Consensus        98 i~~~fd~v~~L~~G~~v~~G~~~~~~~  124 (437)
                      ..+.||||++|++|++++.|+++++.+
T Consensus       220 ~l~~aDrI~vl~~G~i~~~Gt~~eL~~  246 (281)
T d1r0wa_         220 HLRKADKILILHQGSSYFYGTFSELQS  246 (281)
T ss_dssp             HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            457899999999999999999998864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.73  E-value=2.6e-18  Score=155.92  Aligned_cols=93  Identities=18%  Similarity=0.271  Sum_probs=76.0

Q ss_pred             HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEE
Q 013741            8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV   87 (437)
Q Consensus         8 ~~v~~~l~~l~L~~~~~~~vg~~~~~~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tv   87 (437)
                      +.+.+.++.+++.+.. .++     ..||||||||++||++|+.+|++++|||||+|||+.++.++++.|+++.+++.++
T Consensus       105 ~~~~~~l~~~~~~~~~-~~~-----~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~  178 (200)
T d1sgwa_         105 NEIMDALESVEVLDLK-KKL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV  178 (200)
T ss_dssp             HHHHHHHHHTTCCCTT-SBG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEE
T ss_pred             HHHHHHHHHcCCcccc-ccc-----CcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEE
Confidence            4566778888875532 334     4699999999999999999999999999999999999999999999998865566


Q ss_pred             EEEecCCchHHHhhcCeEEEEeC
Q 013741           88 VCSIHQPSSHLFYLFDDLLLLSN  110 (437)
Q Consensus        88 i~t~hqp~~~i~~~fd~v~~L~~  110 (437)
                      |+++|+..    ++||.+..|++
T Consensus       179 ii~~~~~l----~~~D~~~~l~~  197 (200)
T d1sgwa_         179 IISSREEL----SYCDVNENLHK  197 (200)
T ss_dssp             EEEESSCC----TTSSEEEEGGG
T ss_pred             EEEEechh----hhcchhhheee
Confidence            66666532    47999998865

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=3.8e-09  Score=103.93  Aligned_cols=74  Identities=16%  Similarity=0.176  Sum_probs=63.3

Q ss_pred             CCCCHHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEEE
Q 013741           33 RGISSGEKKRLSISIEI----LTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL  108 (437)
Q Consensus        33 ~~lSgGerkRv~ia~~l----~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~L  108 (437)
                      +.+|||||.++++|.-+    ..++++++||||+++||+..+..+.+.|++++..+.-+|++||+|  .+.+.+|+.+..
T Consensus       331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V  408 (427)
T d1w1wa_         331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV  408 (427)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred             hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEEE
Confidence            56899999998876543    356679999999999999999999999999876666799999997  488999998765

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.08  E-value=4.8e-06  Score=77.87  Aligned_cols=77  Identities=25%  Similarity=0.238  Sum_probs=64.3

Q ss_pred             cCCCCHHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCchHHHhhcCeEEE
Q 013741           32 LRGISSGEKKRLSISIEI----LTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLL  107 (437)
Q Consensus        32 ~~~lSgGerkRv~ia~~l----~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~~g~tvi~t~hqp~~~i~~~fd~v~~  107 (437)
                      ...+|+|||+...++..+    ..+|+++++|||-++||+.....+.+.|++.++ +.-+|+|||.|.  +.+.+|++..
T Consensus       217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~  293 (308)
T d1e69a_         217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG  293 (308)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred             hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEE
Confidence            457999999998776654    446789999999999999999999999999875 478999999984  6788999876


Q ss_pred             Ee--CC
Q 013741          108 LS--NG  111 (437)
Q Consensus       108 L~--~G  111 (437)
                      +.  +|
T Consensus       294 v~~~~g  299 (308)
T d1e69a_         294 VTMVNG  299 (308)
T ss_dssp             EEESSS
T ss_pred             EEEeCC
Confidence            53  55

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.00  E-value=1e-06  Score=75.62  Aligned_cols=81  Identities=12%  Similarity=-0.004  Sum_probs=64.1

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCchHHHhhcCeEEEEeCCe
Q 013741           34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGE  112 (437)
Q Consensus        34 ~lSgGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tvi~t~hqp~~~i~~~fd~v~~L~~G~  112 (437)
                      .+|+|+++|..+++++..+|+++++|||...  ........+.+.++-+ .+.++|+++|+..  ....+|++..+.+|+
T Consensus        81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~~~~  156 (178)
T d1ye8a1          81 EELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMHDPNVNVVATIPIRD--VHPLVKEIRRLPGAV  156 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHTCTTSEEEEECCSSC--CSHHHHHHHTCTTCE
T ss_pred             hhhhhhhHHHHHHHHHhcCCCceeecCCCcc--chhhHHHHHHHHHHhccCCCEEEEEEccHH--HHHhhceEEEEeCCE
Confidence            4699999999999999999999999998443  3344556666666554 5789999999854  466789999999999


Q ss_pred             EEEeeC
Q 013741          113 TIYFGD  118 (437)
Q Consensus       113 ~v~~G~  118 (437)
                      ++.-++
T Consensus       157 i~~v~~  162 (178)
T d1ye8a1         157 LIELTP  162 (178)
T ss_dssp             EEECCT
T ss_pred             EEEECC
Confidence            986543

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.62  E-value=0.082  Score=46.37  Aligned_cols=63  Identities=19%  Similarity=0.209  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCEEEEEecCCchHHHhh
Q 013741           37 SGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQ-VLKCIALDGRIVVCSIHQPSSHLFYL  101 (437)
Q Consensus        37 gGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~-~l~~l~~~g~tvi~t~hqp~~~i~~~  101 (437)
                      ..|-+|++-....+.+.+++++||+.+|=|+.....+.. .++.|.+.+..+++++|..  ++..+
T Consensus        99 ~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l  162 (224)
T d1ewqa2          99 MVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL  162 (224)
T ss_dssp             HHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred             HHhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech--hhhhh
Confidence            467788888888888889999999999999988877664 5677888888999999984  45554

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.76  E-value=0.15  Score=44.91  Aligned_cols=59  Identities=14%  Similarity=0.102  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhc-CCEEEEEecCCc
Q 013741           37 SGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQ-VLKCIALD-GRIVVCSIHQPS   95 (437)
Q Consensus        37 gGerkRv~ia~~l~~~p~ll~lDEPtsgLD~~~~~~i~~-~l~~l~~~-g~tvi~t~hqp~   95 (437)
                      ..|-+|++=...-+++.+++++||+.+|=|+.....+.. .++.+..+ +..+++|+|...
T Consensus       105 ~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~  165 (234)
T d1wb9a2         105 MVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE  165 (234)
T ss_dssp             HHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred             HHHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence            567888887777788888999999999999999988865 47778764 567888888743