Citrus Sinensis ID: 013753

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
MVSASPSPQKEVESNKKWSDGEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
ccccccccccHHccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
cccccccccHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHEEEHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEHcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
mvsaspspqkevesnkkwsdgeptrrakWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINlhecvpgvrfdryidlgrhafgpklgpwivlpqqLIVQVGCDIVYMVTGGKCLKKFVEMacshckplrQTFWILIFGSLHFFlsqlpdinsvsSVSLAAAVMSLSYSTIAWagslshgrienvsyaykhtssaDYMFRVFNALGQISFAFAGHAVALEIQatipstpekpskiLMWKGALGAYFVNAICYFPVALIGYwafgqdvddnVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMmikrmnfppgaAVRVVARSAYVAFTLFVGvtfpffgdllgffggfgftptsyflpsimwlvikkpkrfspkwiINWASIFIGVFIMLASTIGGfrnivadastysfyt
mvsaspspqkevesnkkwsdgeptRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
MVSASPSPQKEVESNKKWSDGEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINsvssvslaaavmslsysTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGaavrvvarsayvaFTLFVGVtfpffgdllgffggfgftptSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
*************************RAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPST**KPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSF**
***************************KWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPS*PE*PSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
***********************TRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
****************KWSDGEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
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MVSASPSPQKEVESNKKWSDGEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVADASTYSFYT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query437 2.2.26 [Sep-21-2011]
Q9C6M2440 Lysine histidine transpor yes no 0.979 0.972 0.764 0.0
Q9FKS8446 Lysine histidine transpor no no 0.974 0.955 0.615 1e-157
Q9C733453 Lysine histidine transpor no no 0.979 0.944 0.589 1e-147
Q9LRB5441 Lysine histidine transpor no no 0.997 0.988 0.584 1e-145
Q9SR44441 Lysine histidine transpor no no 1.0 0.990 0.587 1e-144
O22719451 Lysine histidine transpor no no 0.942 0.913 0.533 1e-127
Q9C9J0448 Lysine histidine transpor no no 0.993 0.968 0.541 1e-124
Q9SS86455 Lysine histidine transpor no no 0.958 0.920 0.515 1e-120
Q9SX98519 Lysine histidine transpor no no 0.972 0.818 0.352 1e-70
Q84WE9478 Lysine histidine transpor no no 0.874 0.799 0.325 2e-50
>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1 Back     alignment and function desciption
 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/428 (76%), Positives = 373/428 (87%)

Query: 9   QKEVESNKKWSDGEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISW 68
           + + +S +KW+  +P+R AKWWYSTFH VTAMIGAGVLSLPYAMAYLGWGPGT VL ++W
Sbjct: 12  ETDRKSGEKWTAEDPSRPAKWWYSTFHTVTAMIGAGVLSLPYAMAYLGWGPGTFVLAMTW 71

Query: 69  VTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVT 128
             TLNTMWQM+ LHECVPG RFDRYIDLGR+AFGPKLGPWIVLPQQLIVQVGC+IVYMVT
Sbjct: 72  GLTLNTMWQMVQLHECVPGTRFDRYIDLGRYAFGPKLGPWIVLPQQLIVQVGCNIVYMVT 131

Query: 129 GGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYST 188
           GGKCLK+FVE+ CS C P+RQ++WIL FG +HF LSQLP+ NSV+ VSLAAAVMSL YST
Sbjct: 132 GGKCLKQFVEITCSTCTPVRQSYWILGFGGVHFILSQLPNFNSVAGVSLAAAVMSLCYST 191

Query: 189 IAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPE 248
           IAW GS++HGR+ +VSY YK T+  D+ FRVFNALGQISFAFAGHAVALEIQAT+PSTPE
Sbjct: 192 IAWGGSIAHGRVPDVSYDYKATNPGDFTFRVFNALGQISFAFAGHAVALEIQATMPSTPE 251

Query: 249 KPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVV 308
           +PSK+ MW+G +GAY VNA+CYFPVALI YWAFGQDVDDNVLM L+RP WLIAAANLMVV
Sbjct: 252 RPSKVPMWQGVIGAYVVNAVCYFPVALICYWAFGQDVDDNVLMNLQRPAWLIAAANLMVV 311

Query: 309 VHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLL 368
           VHVIGSYQVFAMPVF LLE MM+ +  F  G  +R   R+ YVAFTLF+GV+FPFFGDLL
Sbjct: 312 VHVIGSYQVFAMPVFDLLERMMVNKFGFKHGVVLRFFTRTIYVAFTLFIGVSFPFFGDLL 371

Query: 369 GFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTIGGFRNIVA 428
           GFFGGFGF PTS+FLPSIMWL+IKKP+RFS  W +NW SI +GVFIMLASTIGG RNI+A
Sbjct: 372 GFFGGFGFAPTSFFLPSIMWLIIKKPRRFSVTWFVNWISIIVGVFIMLASTIGGLRNIIA 431

Query: 429 DASTYSFY 436
           D+STYSFY
Sbjct: 432 DSSTYSFY 439
Amino acid transporter.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description
>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2 Back     alignment and function description
>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2 Back     alignment and function description
>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1 Back     alignment and function description
>sp|Q84WE9|LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
224099345435 lysine/histidine transporter [Populus tr 0.995 1.0 0.837 0.0
224111726423 lysine/histidine transporter [Populus tr 0.965 0.997 0.845 0.0
225423911438 PREDICTED: lysine histidine transporter- 1.0 0.997 0.819 0.0
449434650437 PREDICTED: lysine histidine transporter- 1.0 1.0 0.800 0.0
356495960437 PREDICTED: lysine histidine transporter- 1.0 1.0 0.798 0.0
147858122420 hypothetical protein VITISV_012213 [Viti 0.949 0.988 0.838 0.0
357488425439 Lysine/histidine transporter [Medicago t 1.0 0.995 0.783 0.0
356535563419 PREDICTED: lysine histidine transporter- 0.956 0.997 0.825 0.0
388513405439 unknown [Lotus japonicus] 1.0 0.995 0.781 0.0
255576517418 amino acid transporter, putative [Ricinu 0.956 1.0 0.807 0.0
>gi|224099345|ref|XP_002311447.1| lysine/histidine transporter [Populus trichocarpa] gi|222851267|gb|EEE88814.1| lysine/histidine transporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/437 (83%), Positives = 398/437 (91%), Gaps = 2/437 (0%)

Query: 1   MVSASPSPQKEVESNKKWSDGEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPG 60
           MVSASPS  KE +S  KW++G+P RRAKWWYSTFH VTAMIGAGVLSLPYAMAYLGWGPG
Sbjct: 1   MVSASPS--KEDQSIGKWTEGDPARRAKWWYSTFHTVTAMIGAGVLSLPYAMAYLGWGPG 58

Query: 61  TMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVG 120
             VLV+SW  TLNTMWQMI LHECVPG RFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVG
Sbjct: 59  ITVLVLSWCMTLNTMWQMIELHECVPGTRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVG 118

Query: 121 CDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180
           CDIVYMVTGGK LKKF+EM C+ C P+RQ++WILIFG +HFFLSQLP+ NSV+ VSLAAA
Sbjct: 119 CDIVYMVTGGKSLKKFMEMTCASCTPIRQSYWILIFGGIHFFLSQLPNFNSVAGVSLAAA 178

Query: 181 VMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQ 240
           VMSL YSTIAWAGSL+HG+I+NVSYAYK+TS+ADYMFRVFNALG+ISFAFAGHAV LEIQ
Sbjct: 179 VMSLGYSTIAWAGSLAHGQIDNVSYAYKNTSAADYMFRVFNALGEISFAFAGHAVVLEIQ 238

Query: 241 ATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLI 300
           ATIPST EKPSKI MWKGALGAYF+NAICYFPVALIGYWAFGQDVDDNVLM LKRP WLI
Sbjct: 239 ATIPSTTEKPSKIPMWKGALGAYFINAICYFPVALIGYWAFGQDVDDNVLMELKRPAWLI 298

Query: 301 AAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVT 360
           A+ANLMVVVHVIGSYQV+AMPVF +LE MM+KR +FPPG A+R+V RS YVAFTLFVGVT
Sbjct: 299 ASANLMVVVHVIGSYQVYAMPVFDMLERMMMKRFSFPPGLALRLVTRSTYVAFTLFVGVT 358

Query: 361 FPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLASTI 420
           FPFFGDLLGFFGGFGF PTSYFLP +MWL+IKKPKRFS KW INWA IF+GVFIM+ASTI
Sbjct: 359 FPFFGDLLGFFGGFGFAPTSYFLPCVMWLIIKKPKRFSTKWFINWACIFVGVFIMMASTI 418

Query: 421 GGFRNIVADASTYSFYT 437
           GGFRNIV DAS+Y FYT
Sbjct: 419 GGFRNIVTDASSYRFYT 435

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224111726|ref|XP_002315954.1| lysine/histidine transporter [Populus trichocarpa] gi|222864994|gb|EEF02125.1| lysine/histidine transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225423911|ref|XP_002281867.1| PREDICTED: lysine histidine transporter-like 6 [Vitis vinifera] gi|297737853|emb|CBI27054.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449434650|ref|XP_004135109.1| PREDICTED: lysine histidine transporter-like 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356495960|ref|XP_003516838.1| PREDICTED: lysine histidine transporter-like 6-like [Glycine max] Back     alignment and taxonomy information
>gi|147858122|emb|CAN79675.1| hypothetical protein VITISV_012213 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357488425|ref|XP_003614500.1| Lysine/histidine transporter [Medicago truncatula] gi|355515835|gb|AES97458.1| Lysine/histidine transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|356535563|ref|XP_003536314.1| PREDICTED: lysine histidine transporter-like 6-like [Glycine max] Back     alignment and taxonomy information
>gi|388513405|gb|AFK44764.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255576517|ref|XP_002529150.1| amino acid transporter, putative [Ricinus communis] gi|223531429|gb|EEF33263.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
TAIR|locus:2031215440 AT1G25530 [Arabidopsis thalian 0.997 0.990 0.681 1.8e-165
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.961 0.952 0.540 1.1e-128
TAIR|locus:2154815446 LHT1 "lysine histidine transpo 0.974 0.955 0.531 1.6e-125
TAIR|locus:2008605441 AT1G67640 "AT1G67640" [Arabido 1.0 0.990 0.507 8e-124
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.974 0.965 0.515 5.7e-123
TAIR|locus:2008154453 AT1G48640 [Arabidopsis thalian 0.974 0.940 0.512 1.6e-118
TAIR|locus:2013056448 AT1G71680 [Arabidopsis thalian 0.993 0.968 0.470 4.4e-107
TAIR|locus:2008435451 AT1G61270 [Arabidopsis thalian 0.938 0.909 0.466 2e-102
TAIR|locus:2015383519 AT1G47670 [Arabidopsis thalian 0.956 0.805 0.330 6.9e-63
TAIR|locus:2132816478 LHT7 "LYS/HIS transporter 7" [ 0.876 0.801 0.283 1.1e-41
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1610 (571.8 bits), Expect = 1.8e-165, P = 1.8e-165
 Identities = 299/439 (68%), Positives = 340/439 (77%)

Query:     1 MVSASP-SPQKEVE--SNKKWSDGEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGW 57
             MVS+SP SP KE +  S +KW+  +P+R AKWWYSTFH VTAMIGAGVLSLPYAMAYLGW
Sbjct:     1 MVSSSPVSPSKETDRKSGEKWTAEDPSRPAKWWYSTFHTVTAMIGAGVLSLPYAMAYLGW 60

Query:    58 GPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIV 117
             GPGT VL ++W  TLNTMWQM+ LHECVPG RFDRYIDLGR+AFGPKLGPWIVLPQQLIV
Sbjct:    61 GPGTFVLAMTWGLTLNTMWQMVQLHECVPGTRFDRYIDLGRYAFGPKLGPWIVLPQQLIV 120

Query:   118 QVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINXXXXXXX 177
             QVGC+IVYMVTGGKCLK+FVE+ CS C P+RQ++WIL FG +HF LSQLP+ N       
Sbjct:   121 QVGCNIVYMVTGGKCLKQFVEITCSTCTPVRQSYWILGFGGVHFILSQLPNFNSVAGVSL 180

Query:   178 XXXXXXXXXXTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVAL 237
                       TIAW GS++HGR+ +VSY YK T+  D+ FRVFNALGQISFAFAGHAVAL
Sbjct:   181 AAAVMSLCYSTIAWGGSIAHGRVPDVSYDYKATNPGDFTFRVFNALGQISFAFAGHAVAL 240

Query:   238 EIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPG 297
             EIQAT+PSTPE+PSK+ MW+G +GAY VNA+CYFPVALI YWAFGQDVDDNVLM L+RP 
Sbjct:   241 EIQATMPSTPERPSKVPMWQGVIGAYVVNAVCYFPVALICYWAFGQDVDDNVLMNLQRPA 300

Query:   298 WLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGXXXXXXXXXXXXXFTLFV 357
             WLIAAANLMVVVHVIGSYQVFAMPVF LLE MM+ +  F  G             FTLF+
Sbjct:   301 WLIAAANLMVVVHVIGSYQVFAMPVFDLLERMMVNKFGFKHGVVLRFFTRTIYVAFTLFI 360

Query:   358 GVXXXXXXXXXXXXXXXXXXXXSYFLPSIMWLVIKKPKRFSPKWIINWASIFIGVFIMLA 417
             GV                    S+FLPSIMWL+IKKP+RFS  W +NW SI +GVFIMLA
Sbjct:   361 GVSFPFFGDLLGFFGGFGFAPTSFFLPSIMWLIIKKPRRFSVTWFVNWISIIVGVFIMLA 420

Query:   418 STIGGFRNIVADASTYSFY 436
             STIGG RNI+AD+STYSFY
Sbjct:   421 STIGGLRNIIADSSTYSFY 439
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132816 LHT7 "LYS/HIS transporter 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C6M2LHTL6_ARATHNo assigned EC number0.76400.97940.9727yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PtrLHT6
lysine/histidine transporter (435 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 2e-95
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 5e-18
PLN03074473 PLN03074, PLN03074, auxin influx permease; Provisi 4e-16
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  292 bits (749), Expect = 2e-95
 Identities = 138/412 (33%), Positives = 209/412 (50%), Gaps = 18/412 (4%)

Query: 25  RRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHEC 84
                W + F+ + A+IGAGVLSLPYA   LGW PG ++LVI  + +L T+  ++   + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 85  VPGV---RFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMAC 141
           V  V   R   Y DLG   FGPK G  ++L   L+   G  I Y++  G  L    +   
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPK-GKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFF 119

Query: 142 SHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIE 201
             C  +   ++I+IFG +   LS +P+++++S +SL AAV SL Y  I        G + 
Sbjct: 120 DTC-HISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSL-YIVILVLSVAELGVLT 177

Query: 202 NVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALG 261
                     +   + R+F A+G I FAF GHAV L IQ T+ S P K     M K  L 
Sbjct: 178 AQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKS-PSKFKA--MTKVLLT 234

Query: 262 AYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMP 321
           A  +  + Y  V L+GY AFG +V  N+L+ L +  WLI  ANL++V+H++ SY + A P
Sbjct: 235 AIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFP 294

Query: 322 VFHLLEGMMIKR----MNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFT 377
           +  ++E ++ ++     + P    +RVV RS  V  T  + ++ PF GD L   G     
Sbjct: 295 IRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGA 354

Query: 378 PTSYFLPSIMWLVIKKPKRFSPKW-----IINWASIFIGVFIMLASTIGGFR 424
           P ++ LP +  L +KK K+ S +      I++   I IG+ +M     G   
Sbjct: 355 PLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 437
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.96
PRK09664415 tryptophan permease TnaB; Provisional 99.95
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.95
PRK10483414 tryptophan permease; Provisional 99.95
PRK15132403 tyrosine transporter TyrP; Provisional 99.95
PRK13629443 threonine/serine transporter TdcC; Provisional 99.92
TIGR00814397 stp serine transporter. The HAAAP family includes 99.9
PRK10655438 potE putrescine transporter; Provisional 99.85
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.83
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.83
PRK10249458 phenylalanine transporter; Provisional 99.81
PRK10644445 arginine:agmatin antiporter; Provisional 99.81
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.8
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.8
TIGR00909429 2A0306 amino acid transporter. 99.8
PRK11387471 S-methylmethionine transporter; Provisional 99.8
PRK15049499 L-asparagine permease; Provisional 99.78
PRK11021410 putative transporter; Provisional 99.78
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.78
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.77
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.77
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.77
PRK10238456 aromatic amino acid transporter; Provisional 99.76
PRK10836489 lysine transporter; Provisional 99.76
PRK10746461 putative transport protein YifK; Provisional 99.76
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.76
TIGR00911501 2A0308 L-type amino acid transporter. 99.75
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.75
PRK10580457 proY putative proline-specific permease; Provision 99.74
TIGR00913478 2A0310 amino acid permease (yeast). 99.72
TIGR00930 953 2a30 K-Cl cotransporter. 99.71
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.69
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.68
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.66
COG0833541 LysP Amino acid transporters [Amino acid transport 99.64
COG0531466 PotE Amino acid transporters [Amino acid transport 99.63
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.59
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.57
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.57
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.52
PRK15238496 inner membrane transporter YjeM; Provisional 99.51
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.48
PF03845320 Spore_permease: Spore germination protein; InterPr 99.44
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.36
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.91
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.88
KOG3832319 consensus Predicted amino acid transporter [Genera 98.87
COG3949349 Uncharacterized membrane protein [Function unknown 98.85
PRK11375484 allantoin permease; Provisional 98.75
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.67
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.58
TIGR00813407 sss transporter, SSS family. have different number 98.58
PRK12488549 acetate permease; Provisional 98.53
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.42
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.4
PRK09395551 actP acetate permease; Provisional 98.39
COG1457442 CodB Purine-cytosine permease and related proteins 98.35
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.34
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.26
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.26
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 98.21
PRK10484523 putative transporter; Provisional 98.17
PRK11017404 codB cytosine permease; Provisional 98.16
PRK15419502 proline:sodium symporter PutP; Provisional 98.14
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.06
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.94
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.85
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.83
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.76
COG4147529 DhlC Predicted symporter [General function predict 97.66
PRK00701439 manganese transport protein MntH; Reviewed 97.42
PF01566358 Nramp: Natural resistance-associated macrophage pr 97.31
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.11
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 96.96
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 96.82
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 96.79
TIGR00835425 agcS amino acid carrier protein. Members of the AG 96.67
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 96.65
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 96.62
PRK15015 701 carbon starvation protein A; Provisional 95.68
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 95.53
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 95.5
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 95.4
PRK15433439 branched-chain amino acid transport system 2 carri 95.33
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 95.16
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 94.02
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 93.82
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 92.13
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 91.23
PHA02764399 hypothetical protein; Provisional 90.23
COG1966 575 CstA Carbon starvation protein, predicted membrane 90.17
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 87.39
KOG2466572 consensus Uridine permease/thiamine transporter/al 84.91
PRK15433439 branched-chain amino acid transport system 2 carri 84.07
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-54  Score=431.46  Aligned_cols=392  Identities=18%  Similarity=0.212  Sum_probs=323.0

Q ss_pred             CceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHhCCCcc
Q 013753           27 AKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLG  106 (437)
Q Consensus        27 ~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~G~~~g  106 (437)
                      .|..++++|++|+++|+|+|++|++|+++||++|++++++++.++.|+.+++.+++++. +.  ++|+|++++++|| +|
T Consensus        60 gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~-~~--~sY~~la~~~~G~-~g  135 (467)
T PTZ00206         60 GGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT-NI--RTYEGVARVLLGP-WG  135 (467)
T ss_pred             CcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CC--CCHHHHHHHHhCH-HH
Confidence            56688999999999999999999999999999999999999999999999999987753 23  3999999999997 68


Q ss_pred             CcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCC---C-cccchhhHHHHHHHHHHhhcCCCcchhhHHHHHHHHH
Q 013753          107 PWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHC---K-PLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVM  182 (437)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~---~-~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~  182 (437)
                      ++++++.+.+.++|.|++|.++.+|.++.+++......   . ..++..+.++..++++|+++.|++++++++|.+++.+
T Consensus       136 ~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~  215 (467)
T PTZ00206        136 SYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSF  215 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHH
Confidence            89999999999999999999999999998886422110   0 1123344456677899999999999999999999986


Q ss_pred             HHHHHHHHHHhhhccccccCcc---cccc---CCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchh
Q 013753          183 SLSYSTIAWAGSLSHGRIENVS---YAYK---HTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMW  256 (437)
Q Consensus       183 ~~~~~~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~  256 (437)
                      ++...+.+++....++.+++.+   ....   +....+...+.+.++++++|||.||.+++++++|    ||||+.+++.
T Consensus       216 i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~----M~~~t~~~~~  291 (467)
T PTZ00206        216 MVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMD----MTNRSVGKFV  291 (467)
T ss_pred             HHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHh----hcccchhHHH
Confidence            6655555555555444333211   1110   0011122346889999999999999999999999    8998888888


Q ss_pred             hhhHHHHHHHHHHHHhHHHHHhhhcCCCCchhhhhccC-CChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhcCC
Q 013753          257 KGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALK-RPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMN  335 (437)
Q Consensus       257 ~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~-~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~~  335 (437)
                      ++...++.+++++|.++|++||+.||++++++++.|++ .++....++++++.+.++.+||++.+|+|+.+++.+..+.+
T Consensus       292 ~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~  371 (467)
T PTZ00206        292 LASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDAR  371 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcc
Confidence            99999999999999999999999999999999999994 56778888899999999999999999999999998754432


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHhhccchhHHhhhhcccccchhHhhhhhhhhhhhc---CCCCCCHHHHHHHHHHHHHH
Q 013753          336 FPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFLPSIMWLVIK---KPKRFSPKWIINWASIFIGV  412 (437)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~---~~~~~~~~~~~~~~~~~~g~  412 (437)
                       +.+++++...+..+.+.++++|+.+|+++.+++++||++++.++|++|+++|++..   +++...++++.++.++++|+
T Consensus       372 -~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv  450 (467)
T PTZ00206        372 -KVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGV  450 (467)
T ss_pred             -cCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHh
Confidence             33456666667677778899999999999999999999999999999999999842   22323345577999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 013753          413 FIMLASTIGGFRNIV  427 (437)
Q Consensus       413 ~~~v~gt~~~i~~~~  427 (437)
                      +..+.|||+++++.+
T Consensus       451 ~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        451 IAIVFGTGATIWGVT  465 (467)
T ss_pred             heEEecchhHhhHHh
Confidence            999999999999876

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query437
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.87
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.78
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.7
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.05
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.24
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 98.1
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 96.9
4ain_A539 Glycine betaine transporter BETP; membrane protein 83.67
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.87  E-value=8e-21  Score=188.68  Aligned_cols=357  Identities=15%  Similarity=0.098  Sum_probs=223.3

Q ss_pred             ccccCCceeehhhhhhhhccccccchHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHh
Q 013753           22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF  101 (437)
Q Consensus        22 ~~~~~~~~~~~~~~l~~~~iG~Gil~lP~a~~~~G~~~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~  101 (437)
                      +++|+.+.++..+..+++++|+|++.+|...++.|. .+++.+++.++........+.|...+.|+.+  +..++.++.+
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~   81 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCF   81 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHS
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHc
Confidence            467889999999999999999999999998888886 4888888999999999999999998888866  8899999999


Q ss_pred             CCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHhccCCCcccchhhH-HHHHHHHHHhhcCCCcchhhHHHHHHH
Q 013753          102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWI-LIFGSLHFFLSQLPDINSVSSVSLAAA  180 (437)
Q Consensus       102 G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~i~~~i~~pl~~~~~l~~l~~~s~~~~  180 (437)
                      ||+.| ++..+..++........+....++++..+++...     .+...+. .+...+..-....+..+...+++.+..
T Consensus        82 G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~  155 (445)
T 3l1l_A           82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-----DPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVAT  155 (445)
T ss_dssp             CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG-----SHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc-----ccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            99877 5666666666666666666666665554433211     0001111 111222222223346777777777666


Q ss_pred             HHHHHHHHHHHHhhhccccccCccccccCCCchhhHhHHHHHHHHHHHHhcCCcchHhhhhhCCCCCCCCcccchhhhhH
Q 013753          181 VMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGAL  260 (437)
Q Consensus       181 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~  260 (437)
                      ...+..++++++..+...++++....+. .....++.++..++...+|+|.|++......+|    +|||+| +.+|++.
T Consensus       156 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e----~k~p~r-~ip~a~~  229 (445)
T 3l1l_A          156 VLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGV----VKNPKR-NVPIATI  229 (445)
T ss_dssp             HHHHHHHHHHHHTTSTTCCCCCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGG----BSSHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhChhhcccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHH----hcCccc-cccHHHH
Confidence            6555544444443333222221111111 111224677889999999999999999999999    899987 7899999


Q ss_pred             HHHHHHHHHHHhHHHHHhhhcCCCCc----hh---hhhccCCChHHHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhc
Q 013753          261 GAYFVNAICYFPVALIGYWAFGQDVD----DN---VLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKR  333 (437)
Q Consensus       261 ~~~~~~~~~Y~~~g~~gy~~fg~~~~----~~---il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~  333 (437)
                      .+...+.++|++..+......+.+..    ++   +..... .++...+..+...+..+.+.........+.+..+-+++
T Consensus       230 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg  308 (445)
T 3l1l_A          230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDG  308 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999998887777764321    11   111111 13444555666666666665555555555554443322


Q ss_pred             C-------CCCCchhhHHHHHHHHHHHHHHHHhhcc----chhHHhhhhcccccchhHhhhhhhhhhhhcCCCC
Q 013753          334 M-------NFPPGAAVRVVARSAYVAFTLFVGVTFP----FFGDLLGFFGGFGFTPTSYFLPSIMWLVIKKPKR  396 (437)
Q Consensus       334 ~-------~~~~~~~~~~~~~~~~~~~~~~la~~~p----~~~~~~~~~Ga~~~~~~~~i~P~l~~l~~~~~~~  396 (437)
                      .       ..+++.+.+.+.....+...+.+....|    .++.+.++.+  ....+.|.++++.+++.|++++
T Consensus       309 ~lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          309 LFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             SSCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred             CCcHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence            1       0123344444443333222222221222    3566666654  3456889999999999887654
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query437
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 97.4
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.40  E-value=0.06  Score=51.15  Aligned_cols=110  Identities=15%  Similarity=0.122  Sum_probs=63.4

Q ss_pred             Cceeehhhhhhhhccccc-cchHHHHHHhcChh----HHHHHHHHHHHHHHHHHHHHhhchhccCCcccCCHHHHHHHHh
Q 013753           27 AKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWG----PGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF  101 (437)
Q Consensus        27 ~~~~~~~~~l~~~~iG~G-il~lP~a~~~~G~~----~g~~~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~  101 (437)
                      .+..+-++..++..+|-| +.-.|+-..+-|..    +-.+.+++.+.-..+-=..+.+..++.+-   +.+..+.....
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i---~~~~~i~~~~~   81 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGH---GTTPAIFYLLW   81 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTC---CSHHHHHHHHS
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcc---cHHHHHHHHhc
Confidence            355667888999999999 67799987655533    33333344444444444455554443332   26777666655


Q ss_pred             CCCccCcchhhHHHHHHHHHHHHHHHhhcccHHHHHHHh
Q 013753          102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMA  140 (437)
Q Consensus       102 G~~~g~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~  140 (437)
                      +.+..+ .+.+.....++..++.|.+..+-.+.......
T Consensus        82 ~~~~~~-giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s~  119 (509)
T d2a65a1          82 RNRFAK-ILGVFGLWIPLVVAIYYVYIESWTLGFAIKFL  119 (509)
T ss_dssp             CSHHHH-HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcchh-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            433332 23334445556666677777776665555443