Citrus Sinensis ID: 013755

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
Protein Sequence
MACESVMTLEKGANLSDIDGEEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEcccccccccEEEEcccccccccHHHHHHccccccEEEEEEEccccccccccccccccccccEEEEEEEEEEEEEcccccccccHHEHHHcccccccccccccEEEEEEEEEccccccccccccccccEEEEEEEEEEEEccEEEEcccccccccEEEEcccccHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccEEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccHEEEcHHHccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEEcccccccEEEEcccccccHHHHHHHHHcccccEEEEEEcHHcHHccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEccccccccccccEEEEEEEEEEcccEEccccccccccccEEEEEEEEEEcccEEEccccccccccEEEEEccccccHHHHHHHHHcccccEEEEEEccHcccccccccccccccccccEEEEEEEEEEEccccccEEEcccccHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHcc
Coil and Loop (DISEMBL)
macesvmtlekganlsdidgeeeepgeviesaaplkvgeerglgnsgiKKKLLkngvdwdtpefgdevTIHYVGtlldgtkfdstrdrydpltfklgtgqvatgldngiitMKKRECAVftftlpselrfgvegrdslppnsvvQFEVELVSWITVVDLSKDGGIVKKILEkgerdaspgdldEVLVKYQVMLGdgtmvaktpEEGVEFYLKDVSYIarledgtvfekkgydgeqplefitDEEQVIAGLDRVAATMKKEEWAIVTINHeygfgnveakrdlatipsCAKLYYEVEMMDFIKEkvpwemnnqgkieaagrkkeegnllfkngkyeragkkynkaadcvsedgsfvddEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAieadpqnrnh
Flexible Loop (DISEMBL)
macesvmtlekganlsdidgeeeepgeviesaaplkvgeerglgnsgikkkllkngvDWDTPEFGDEVTIHYVgtlldgtkfdsTRDRYDPltfklgtgqvatgldnGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITvvdlskdggivkkilekgerdaspgdldEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEygfgnveakrdlATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKieaagrkkeegnlLFKNGKYERAGKKYNKaadcvsedgsfvddeqKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAieadpqnrnh
Low Complexity Region (SEG)
MACESVMTLEKGANLSdidgeeeepgevieSAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH
Disordered region (IsUnstruct)
***********************************************IKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEK********DLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMN****************LLFKNGKY*****KYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKA**********
Disordered Region (DISOPRED)
******************************************LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF*DDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAI**DP*****
Disordered Region (DISEMBL)
*********EKGANLSDI**********IESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH
Disordered Region (DISPRO)
*AC***MTLEKGAN***************ESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MACESVMTLEKGANLSDIDGEEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	437	2.2.26 [Sep-21-2011]
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.819	0.640	0.447	1e-83
Q9FJL3	578	Peptidyl-prolyl cis-trans	yes	no	0.821	0.621	0.441	1e-82
Q38931	551	Peptidyl-prolyl cis-trans	no	no	0.819	0.649	0.429	1e-80
P30416	458	Peptidyl-prolyl cis-trans	yes	no	0.812	0.775	0.357	8e-53
Q9QVC8	458	Peptidyl-prolyl cis-trans	yes	no	0.812	0.775	0.355	1e-52
Q9TRY0	459	Peptidyl-prolyl cis-trans	yes	no	0.867	0.825	0.338	1e-52
Q02790	459	Peptidyl-prolyl cis-trans	yes	no	0.812	0.773	0.347	2e-52
P27124	458	Peptidyl-prolyl cis-trans	yes	no	0.810	0.772	0.346	1e-49
Q64378	456	Peptidyl-prolyl cis-trans	no	no	0.812	0.778	0.334	3e-49
Q9XSI2	457	Peptidyl-prolyl cis-trans	N/A	no	0.812	0.776	0.339	6e-49

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score =  310 bits (795), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 178/398 (44%), Positives = 244/398 (61%), Gaps = 40/398 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+LK G  W+ P+  DEV + Y   L DGT       + + + F +  G +   
Sbjct: 156 DGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGT----VVSKSEGVEFTVKDGHLCPA 211

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L   + TMKK E  +    +  +  FG  GR +      +PPN+ +  ++ELVSW TV +
Sbjct: 212 LAKAVKTMKKGEKVLLA--VKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTE 269

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           +  D  I+KK+L++ E    P +              G +V              V    
Sbjct: 270 IGDDKKILKKVLKEXEGYERPNE--------------GAVVT-------------VKITG 302

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           +L+DGTVF KKG+D ++P EF TDEE VI GLDR    MKK E A+VTI  EY +G+ E+
Sbjct: 303 KLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTES 362

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           K+D A +P  + + YEVE++ F+K+K  W++NN  KIEAAG KKEEGN LFK+GKY RA 
Sbjct: 363 KQD-AIVPPNSTVIYEVELVSFVKDKESWDLNNSEKIEAAGTKKEEGNALFKSGKYARAS 421

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398
           K+Y KAA  +  D SF +DE+K  K L+++C LN+AAC LKLKDY+ A +LC+KVL+ D 
Sbjct: 422 KRYEKAAKFIEYDTSFSEDEKKQSKQLKITCNLNNAACKLKLKDYKQAEKLCTKVLELDS 481

Query: 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
            NVKALYRRAQAY ++ADL LAE+DIKKA+E DP+NR+
Sbjct: 482 RNVKALYRRAQAYTQLADLELAEVDIKKALEIDPENRD 519

PPIases accelerate the folding of proteins during protein synthesis.
Triticum aestivum (taxid: 4565)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score =  307 bits (786), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 177/401 (44%), Positives = 246/401 (61%), Gaps = 42/401 (10%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVAT 103
           G+ G+ KK++  G  W+ P+  DEV + Y   L DGT       + D + F +  G    
Sbjct: 160 GDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGT----IVGKSDGVEFTVKEGHFCP 215

Query: 104 GLDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-------LPPNSVVQFEVELVSWITV 156
            L   + TMK+ E  + T  +  +  FG  GR +       +PPN+ +Q ++ELVSW TV
Sbjct: 216 ALSKAVKTMKRGEKVLLT--VKPQYGFGEFGRPASDGLQAAIPPNATLQIDLELVSWKTV 273

Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
           V+++ D  ++KKIL++GE                          + P EG    LK    
Sbjct: 274 VEVTDDRKVIKKILKEGEG------------------------YERPNEGAIVKLK---L 306

Query: 217 IARLEDGT-VFEKKGYD-GEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
           I +L+DGT VF KKG++  E+P EF  DEEQVI GL++    MKK E A++TI+ EY FG
Sbjct: 307 IGKLQDGTTVFVKKGHEEDEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYAFG 366

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKY 334
           + E+K++LA IP  + +YYEVE++ FIKEK  W+MN Q +IEAAG+KKEEGN+LFK GKY
Sbjct: 367 SSESKQELAVIPPNSTVYYEVELVSFIKEKESWDMNTQERIEAAGKKKEEGNVLFKAGKY 426

Query: 335 ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394
            RA K+Y +    +  D +F ++E+K  K L+++C LN AAC LKLKDY+ A +L +KVL
Sbjct: 427 ARASKRYERGVKYIEYDSTFDEEEKKKSKDLKIACNLNDAACKLKLKDYKEAAKLSTKVL 486

Query: 395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
           + D  NVKA+YRRA AY+E ADL LAELDIKKA+E DP N+
Sbjct: 487 EMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNK 527

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score =  300 bits (769), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 171/398 (42%), Positives = 243/398 (61%), Gaps = 40/398 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ KK+L  G  W+ P+  DEV + +   L DGT       + D + F +  G     
Sbjct: 153 DGGVFKKILAVGEKWENPKDLDEVLVKFEAKLEDGT----VVGKSDGVEFTVKDGHFCPA 208

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L   + TMKK E  + T  +  +  FG +G+ +      +PPN+ ++  +ELVSW TV +
Sbjct: 209 LTKAVKTMKKGEKVLLT--VKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWKTVSE 266

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  +VKK+L++G+    P +              G +V              V  I 
Sbjct: 267 VTDDNKVVKKVLKEGDGYERPNE--------------GAVVK-------------VKLIG 299

Query: 219 RLEDGTVFEKKGY-DGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277
           +L+DGTVF KKG+ + E+P EF TDEEQV+ GLDR    MKK E A+VTI+ EY FG+ E
Sbjct: 300 KLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNE 359

Query: 278 AKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERA 337
           ++++LA +P  + + YEV+++ F KE+  W+MN + KIEAA +KKEEGN  FK GKY  A
Sbjct: 360 SQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLA 419

Query: 338 GKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397
            K+Y KA   +  D SF ++E+K  K+L+V+C LN AAC LKLKDY+ A +LC+KVL+ +
Sbjct: 420 SKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELE 479

Query: 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
             NVKALYRRAQAYME++DL LAE D+KKA+E DP NR
Sbjct: 480 STNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNR 517

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30416|FKBP4_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5

 Score =  208 bits (529), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 141/394 (35%), Positives = 202/394 (51%), Gaps = 39/394 (9%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 30  DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 89

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLSK-- 161
            D  + TMK  E  V   T   E  +G  G    +PPN+ + FEVEL  +    DL++  
Sbjct: 90  WDIAVATMKVGE--VCHITCKPEYAYGAAGSPPKIPPNATLVFEVELFEF-KGEDLTEEE 146

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
           DGGI+++I  +GE  A P D              G MV    E  +E Y KD  +  R  
Sbjct: 147 DGGIIRRIRTRGEGYARPND--------------GAMV----EVALEGYHKDRLFDQREL 188

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
              V E +  D             +  GL+     M+K E +IV +   Y FG+V  +R 
Sbjct: 189 CFEVGEGESLD-------------LPCGLEEAIQRMEKGEHSIVYLKPSYAFGSVGKER- 234

Query: 282 LATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKY 341
              IP  A+L YEV +  F K K  WEM++  K+E +   KE G   FK GKY++A  +Y
Sbjct: 235 -FQIPPHAELRYEVRLKSFEKAKESWEMSSAEKLEQSNIVKERGTAYFKEGKYKQALLQY 293

Query: 342 NKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV 401
            K    +  + SF  +E + V +LR++  LN A C LKL+ +  AIE C+K L+ D +N 
Sbjct: 294 KKIVSWLEYESSFSGEEMQKVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE 353

Query: 402 KALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
           K L+RR +A++ + D  LA  D +K ++  P N+
Sbjct: 354 KGLFRRGEAHLAVNDFDLARADFQKVLQLYPSNK 387

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9QVC8|FKBP4_RAT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Rattus norvegicus GN=Fkbp4 PE=1 SV=3

 Score =  207 bits (528), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 140/394 (35%), Positives = 202/394 (51%), Gaps = 39/394 (9%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +T   GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 30  DEGVLKVIKREGTGTETAMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 89

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLSKD- 162
            D  + TMK  E  V   T   E  +G  G    +PPN+ + FEVEL  +    DL++D 
Sbjct: 90  WDIAVATMKVGE--VCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF-KGEDLTEDE 146

Query: 163 -GGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
            GGI+++I  +GE  A P D              G MV    E  +E Y  D  +  R  
Sbjct: 147 DGGIIRRIRTRGEGYARPND--------------GAMV----EVALEGYYNDRLFDQREL 188

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
              V E +  D             +  GL+     M+K E +IV +   Y FG+V  +R 
Sbjct: 189 CFEVGEGESLD-------------LPCGLEEAIQRMEKGEHSIVYLKPSYAFGSVGKER- 234

Query: 282 LATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKY 341
              IP  A+L YEV +  F K K  WEMN++ K+E +   KE G + FK GKY++A  +Y
Sbjct: 235 -FQIPPHAELRYEVHLKSFEKAKASWEMNSEEKLEQSNIVKERGTVYFKEGKYKQALLQY 293

Query: 342 NKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV 401
            K    +  + SF  +E + V +LR++  LN A C LKL+ +  AIE C+K L+ D +N 
Sbjct: 294 KKIVSWLEYESSFSGEEMQKVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE 353

Query: 402 KALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
           K L+RR +A++ + D  LA  D +K ++  P N+
Sbjct: 354 KGLFRRGEAHLAVNDFDLARADFQKVLQLYPSNK 387

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). Plays a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly. The PPIase activity controls neuronal growth cones via regulation of TRPC1 channel opening.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TRY0|FKBP4_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Bos taurus GN=FKBP4 PE=1 SV=4

 Score =  207 bits (527), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 144/426 (33%), Positives = 220/426 (51%), Gaps = 47/426 (11%)

Query: 18  IDGEEEEPGEVIESAAPLKVGEERGLGNS-----GIKKKLLKNGVDWDTPEFGDEVTIHY 72
           +  EE +  E    +APL++    G+  S     G+ K + + G   +TP  GD V +HY
Sbjct: 1   MTAEETKAAESGAQSAPLRL---EGVDISPKQDEGVLKVIKREGTGTETPMIGDRVFVHY 57

Query: 73  VGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGV 132
            G LLDGTKFDS+ DR D  +F LG G+V    D  + TMK  E  V   T   E  +G+
Sbjct: 58  TGWLLDGTKFDSSLDRKDRFSFDLGKGEVIKAWDIAVATMKVGE--VCHITCKPEYAYGL 115

Query: 133 EGRD-SLPPNSVVQFEVELVSWITVVDLSK--DGGIVKKILEKGERDASPGDLDEVLVKY 189
            G    +PPN+ + FEVEL  +    DL++  DGGI+++I  +GE  A P +        
Sbjct: 116 AGSPPKIPPNATLVFEVELFEF-KGEDLTEEEDGGIIRRIRTRGEGYAKPNE-------- 166

Query: 190 QVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAG 249
                 G +V    E  +E Y KD  +  R     V E +  D             +  G
Sbjct: 167 ------GALV----EVALEGYFKDQVFDRRELRFEVGEGESMD-------------LPCG 203

Query: 250 LDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEM 309
           L++    M+K E +IV +   Y FG+  A ++   IP  A+L YE+ +  F K K  WEM
Sbjct: 204 LEKAIQRMEKGEHSIVYLKPRYAFGS--AGKEKFQIPPNAELKYEIHLKSFEKAKESWEM 261

Query: 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSC 369
           +++ K+E +   KE G + FK GKY++A  +Y K    +  + SF D++ +  ++LR++ 
Sbjct: 262 SSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFSDEDAEKAQALRLAS 321

Query: 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429
            LN A C LKL+ +  AIE C+K L+ D +N K L+RR +A++ + D  LA  D +K ++
Sbjct: 322 HLNLAMCHLKLQAFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKVLQ 381

Query: 430 ADPQNR 435
             P N+
Sbjct: 382 LYPSNK 387

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q02790|FKBP4_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3

 Score =  206 bits (525), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 137/394 (34%), Positives = 205/394 (52%), Gaps = 39/394 (9%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   + P  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 30  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 89

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLSK-- 161
            D  I TMK  E  V   T   E  +G  G    +PPN+ + FEVEL  +    DL++  
Sbjct: 90  WDIAIATMKVGE--VCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF-KGEDLTEEE 146

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
           DGGI+++I  +GE  A P +              G +V    E  +E Y KD  +  R  
Sbjct: 147 DGGIIRRIQTRGEGYAKPNE--------------GAIV----EVALEGYYKDKLFDQREL 188

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
              + E +  D             +  GL+R    M+K E +IV +   Y FG+V   ++
Sbjct: 189 RFEIGEGENLD-------------LPYGLERAIQRMEKGEHSIVYLKPSYAFGSV--GKE 233

Query: 282 LATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKY 341
              IP  A+L YE+ +  F K K  WEMN++ K+E +   KE G + FK GKY++A  +Y
Sbjct: 234 KFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQY 293

Query: 342 NKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV 401
            K    +  + SF ++E +  ++LR++  LN A C LKL+ +  AIE C+K L+ D +N 
Sbjct: 294 KKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE 353

Query: 402 KALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
           K L+RR +A++ + D  LA  D +K ++  P N+
Sbjct: 354 KGLFRRGEAHLAVNDFELARADFQKVLQLYPNNK 387

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening. Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P27124|FKBP4_RABIT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Oryctolagus cuniculus GN=FKBP4 PE=1 SV=3

 Score =  197 bits (501), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 137/395 (34%), Positives = 206/395 (52%), Gaps = 41/395 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 30  DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 89

Query: 105 LDNGIITMKKRE-CAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLS-- 160
            D  + TMK  E C +   T   E  +G  G    +PPN+ + FEVEL  +    DL+  
Sbjct: 90  WDIAVATMKVGELCRI---TCKPEYAYGSAGSPPKIPPNATLVFEVELFEF-KGEDLTDD 145

Query: 161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARL 220
           +DGGI+++I  +GE  A P D              G +V    E  +E Y KD  +  R 
Sbjct: 146 EDGGIIRRIRTRGEGYARPND--------------GAIV----EVALEGYYKDRLFDQRE 187

Query: 221 EDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKR 280
               V E +  D             +  GL++    M+K E +I+ +   Y FGN  A +
Sbjct: 188 LRFEVGEGESLD-------------LPCGLEKAIQRMEKGEHSILYLKPSYAFGN--AGK 232

Query: 281 DLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKK 340
           +   IP  A+L YEV +  F K K  WEM+++ K+E +   KE G + FK GKY++A  +
Sbjct: 233 EKFQIPPYAELKYEVHLKSFEKAKESWEMSSEEKLEQSAIVKERGTVYFKEGKYKQALLQ 292

Query: 341 YNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400
           Y K    +  + SF  +E +  ++LR++  LN A C LKL+ +  A+E C+K L+ D +N
Sbjct: 293 YKKIVSWLEYESSFSSEEVQKAQALRLASHLNLAMCHLKLQAFSAAVESCNKALELDSNN 352

Query: 401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
            K L+RR +A++ + D  LA  D +K ++  P N+
Sbjct: 353 EKGLFRRGEAHLAVNDFDLARADFQKVLQLYPSNK 387

Immunophilin protein with PPIase and co-chaperone activities. Component of unligated steroid receptors heterocomplexes thought interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments. The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Oryctolagus cuniculus (taxid: 9986)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q64378|FKBP5_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Mus musculus GN=Fkbp5 PE=1 SV=1

 Score =  196 bits (498), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 131/392 (33%), Positives = 196/392 (50%), Gaps = 37/392 (9%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   + P FGD+V +HY G L DG KFDS+ DR  P  F LG GQV   
Sbjct: 30  DRGVLKIVKRVGTSDEAPMFGDKVYVHYKGMLSDGKKFDSSHDRKKPFAFSLGQGQVIKA 89

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDG 163
            D G+ TMKK E  +       E  +G  G    +P N+ + FE+EL+ +    DL +D 
Sbjct: 90  WDIGVSTMKKGE--ICHLLCKPEYAYGSAGHLQKIPSNATLFFEIELLDF-KGEDLFEDS 146

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           G++++I  KGE  ++P +   V V  +   G           G  F  +DV ++      
Sbjct: 147 GVIRRIKRKGEGYSNPNEGATVKVHLEGCCG-----------GRTFDCRDVVFVV----- 190

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
                +G D + P+           G+D+    M++EE  I+ +   YGFG  EA +   
Sbjct: 191 ----GEGEDHDIPI-----------GIDKALVKMQREEQCILYLGPRYGFG--EAGKPKF 233

Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNK 343
            I   A+L YEV +  F K K  WEM+ + K+  A   KE+G + FK GKY +A  +Y K
Sbjct: 234 GIDPNAELMYEVTLKSFEKAKESWEMDTKEKLTQAAIVKEKGTVYFKGGKYTQAVIQYRK 293

Query: 344 AADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA 403
               +  +    + E K  +S  ++ +LN A C LKL++Y  A+E C K L  D  N K 
Sbjct: 294 IVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYNKAVECCDKALGLDSANEKG 353

Query: 404 LYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
           LYRR +A + + D   A+ D +K +  +PQNR
Sbjct: 354 LYRRGEAQLLMNDFESAKGDFEKVLAVNPQNR 385

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSI2|FKBP5_SAGOE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saguinus oedipus GN=FKBP5 PE=2 SV=2

 Score =  195 bits (496), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 133/392 (33%), Positives = 202/392 (51%), Gaps = 37/392 (9%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F +G GQV   
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNGKKFDSSHDRNEPFVFSIGKGQVIKA 89

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDG 163
            D G+ TMKK E  +       E  +G  G    +P N+ + FEVEL+++    DL +DG
Sbjct: 90  WDIGVSTMKKGE--ICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLNF-KGEDLLEDG 146

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           GI+++   +GE  ++P +   V +  +   G           G  F  +DV++       
Sbjct: 147 GIIRRTKRRGEGYSNPNEGARVQIHLEGRCG-----------GRVFDCRDVAF------- 188

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
           TV E  G D + P+           G+D+    M++EE  I+ +   YGFG  EA +   
Sbjct: 189 TVGE--GEDHDIPI-----------GIDKALEKMQREEQCILHLGPRYGFG--EAGKPKF 233

Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNK 343
            I   A+L YEV +  F K K  WEM+ + K+E A   KEEG + FK GKY +A  +Y K
Sbjct: 234 GIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEEGTVYFKGGKYVQAVIQYGK 293

Query: 344 AADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA 403
               +  +    + E K  +S  ++ +LN A C LKL++Y  A+E C K L  D  N K 
Sbjct: 294 IVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYAKAVECCDKALGLDSANEKG 353

Query: 404 LYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
           LYRR +A + + +   A+ D +K +E +PQN+
Sbjct: 354 LYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saguinus oedipus (taxid: 9490)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
255538020	598	peptidylprolyl isomerase, putative [Rici	0.823	0.602	0.539	1e-107
224067192	573	predicted protein [Populus trichocarpa]	0.823	0.628	0.523	1e-103
225458880	600	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.823	0.6	0.498	3e-97
357437549	609	70 kDa peptidyl-prolyl isomerase [Medica	0.816	0.586	0.494	2e-96
356552270	582	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.823	0.618	0.503	4e-95
356564113	583	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.826	0.619	0.492	7e-94
297840663	584	hypothetical protein ARALYDRAFT_338459 [	0.821	0.614	0.493	9e-94
414869595	559	TPA: hypothetical protein ZEAMMB73_59337	0.823	0.644	0.455	3e-86
255589766	574	peptidylprolyl isomerase, putative [Rici	0.821	0.625	0.458	5e-86
226500876	553	LOC100283417 [Zea mays] gi|195634685|gb|	0.819	0.647	0.457	7e-86

>gi|255538020|ref|XP_002510075.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223550776|gb|EEF52262.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/397 (53%), Positives = 270/397 (68%), Gaps = 37/397 (9%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI K++++     + P   DEV + Y   L DGT    T +  + + F +  G +   
Sbjct: 153 DGGIVKRIIEKPEKIERPGDLDEVLVKYEVKLADGTIVAKTPE--EGIEFHVKDGHLCPA 210

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L   ++TM+  E       +  +  FG EG+D+      +PPNSV+  ++EL+S+  VVD
Sbjct: 211 LPKAVMTMRGGEKV--KLIVHPQYAFGEEGKDANDGILPVPPNSVLNMDLELISFKPVVD 268

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  + KKIL++GE                     GT VA       E  L  +SY A
Sbjct: 269 VTGDTKVFKKILKEGE---------------------GTNVAN------EGALVTISYTA 301

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           RL+DGT+FEK+G DGEQPL+F+TDEEQVIAGLDR AATMKK E A++TIN EYGFG+VE 
Sbjct: 302 RLQDGTIFEKRGLDGEQPLQFVTDEEQVIAGLDRAAATMKKGERAVLTINPEYGFGSVEV 361

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           K+D ATIP  + L YE+EM+DFIKEK PWEMNN+ KIEAAGRKKEEGNLLFK+GK++RAG
Sbjct: 362 KQDHATIPPSSVLVYEIEMLDFIKEKTPWEMNNKEKIEAAGRKKEEGNLLFKSGKFQRAG 421

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398
           KKY+KAAD + E+ SF DDEQKL+KSLRVSCWLN AAC LKL D+QG I LCSKVLD + 
Sbjct: 422 KKYDKAADYIVEEVSFDDDEQKLIKSLRVSCWLNGAACSLKLGDFQGTINLCSKVLDVEF 481

Query: 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
            NVKALYRRAQAYM+ ADL+ AELDIKKA+E DP NR
Sbjct: 482 DNVKALYRRAQAYMQTADLVSAELDIKKALEIDPHNR 518

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067192|ref|XP_002302401.1| predicted protein [Populus trichocarpa] gi|222844127|gb|EEE81674.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/397 (52%), Positives = 263/397 (66%), Gaps = 37/397 (9%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+++ G   D P   DEV + Y   L DGT    T +  + + F +  G +   
Sbjct: 157 DGGIIKKIVEKGDKHDRPGDLDEVLVKYQVALADGTIVAKTLE--EGIEFYVKDGHLCPA 214

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L    +TMK+ E       +  +  FG EG+D+      +PPNS +  ++EL S+  V+D
Sbjct: 215 LPKATMTMKRGEKV--KLVVQPQYAFGQEGKDASDAICPVPPNSTLYIDLELTSFKPVID 272

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  + KKIL++GE                     G++VA    EG       +SY A
Sbjct: 273 VTGDAKVFKKILKEGE---------------------GSLVAN---EGATV---TISYTA 305

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           RLEDGTVFE+KG D  QPL+FITDEEQVIAGLDR  ATMKK E+AI+T+  EYGFGNVE 
Sbjct: 306 RLEDGTVFERKGIDDGQPLQFITDEEQVIAGLDRAVATMKKGEYAILTVKPEYGFGNVET 365

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           KRDLA +P  + L YEVEM DFIKEK PWEMNNQ KI+AA RKKEEGNLLFK+GKY RAG
Sbjct: 366 KRDLAIVPPSSILVYEVEMSDFIKEKTPWEMNNQEKIKAAERKKEEGNLLFKSGKYLRAG 425

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398
           KKY+KAA  V E+  F DDEQKLV ++RV+CWLN AAC LKL D+QGAI+LCSKVLD + 
Sbjct: 426 KKYDKAASYVGEEEVFGDDEQKLVTAMRVTCWLNKAACSLKLNDFQGAIKLCSKVLDIEF 485

Query: 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
           +N+KALYRRAQA ++  DL+ A++DIKKA+E DPQNR
Sbjct: 486 YNIKALYRRAQALIQTTDLVSADMDIKKALEVDPQNR 522

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458880|ref|XP_002283423.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase [Vitis vinifera] gi|302142176|emb|CBI19379.3| unnamed protein product [Vitis vinifera]

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 198/397 (49%), Positives = 262/397 (65%), Gaps = 37/397 (9%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+L+ G     P   DE+ + Y   L+D T    T +  + + F +  GQ  + 
Sbjct: 158 DGGIIKKILEKGNRNVQPGDLDELLVKYKVKLVDDTIVAQTPE--EGIEFYMKDGQFCSA 215

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           +   I TMK  E       +  +  FG  GRD+      +PP+SV+  ++ELVS+  V+D
Sbjct: 216 MPKAIKTMKSGEKV--KLIVQPQYAFGDVGRDAENEFPLIPPSSVLIIDLELVSFKPVID 273

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  + KKIL +G                 +   +G  V              V Y A
Sbjct: 274 VTGDSKVFKKILVEGAN--------------TIAANEGATVT-------------VRYTA 306

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           +LEDGT+FEKKG+DGE PL+FITDEEQVI+GLD+  ATM K E +IVTI+ EYG+G++E 
Sbjct: 307 KLEDGTIFEKKGFDGENPLQFITDEEQVISGLDQAVATMTKGERSIVTIHPEYGYGSIEV 366

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
            +D++ +P  + + YEVEM+DF+KEK PWEM++Q KIE AGRKKEEGNLLFK+GKY+RA 
Sbjct: 367 MQDISIVPPSSIIIYEVEMLDFVKEKAPWEMSDQEKIETAGRKKEEGNLLFKSGKYQRAR 426

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398
           KKY+KAAD VSE G F D + K+V++L+VSCWLN AACCLKL ++ GAI+LCSKVLD + 
Sbjct: 427 KKYDKAADYVSECGIFGDGDHKVVETLQVSCWLNGAACCLKLNNFPGAIKLCSKVLDIEF 486

Query: 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
           HNVKALYRRAQAYM+ ADL LA+LDIKKA+EADPQNR
Sbjct: 487 HNVKALYRRAQAYMKTADLDLAQLDIKKALEADPQNR 523

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437549|ref|XP_003589050.1| 70 kDa peptidyl-prolyl isomerase [Medicago truncatula] gi|355478098|gb|AES59301.1| 70 kDa peptidyl-prolyl isomerase [Medicago truncatula]

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 195/394 (49%), Positives = 257/394 (65%), Gaps = 37/394 (9%)

Query: 48  IKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDN 107
           I KK+++ G   D P   DEV + Y   L  GT    T +    + F +  G +   L  
Sbjct: 151 IIKKIMEKGKGNDRPGDLDEVLVKYQVALEAGTVVAETPE--GGVEFYVNDGHLLPRLPK 208

Query: 108 GIITMKKRECAVFTFTLPSELRFGVEGRD------SLPPNSVVQFEVELVSWITVVDLSK 161
            I+TM + E A     +  +  FG +GR+      S+PP+S++   +ELVS+  V++++ 
Sbjct: 209 VIMTMTRGEKA--ELIVQPQYAFGEKGREAGSGFRSIPPDSMLYINIELVSFKPVINVTG 266

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
           D  ++KKI ++GE   +  +   V V+Y  M                           LE
Sbjct: 267 DFTVIKKIFKEGEGAFTANEGANVTVRYTAM---------------------------LE 299

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
           DGTVFEK+G D  QPL+F+TDEEQVI GLDR  ATMKK E AI++I+ +Y FGNVE K+D
Sbjct: 300 DGTVFEKRGIDETQPLKFVTDEEQVITGLDRAVATMKKGERAIISIHPDYAFGNVEVKQD 359

Query: 282 LATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKY 341
           LA +P  +K+ Y++EM+DFIKEK PWE+N+  KI+ A RKKEEGNLLFK+GKY+RA KKY
Sbjct: 360 LAIVPPGSKVVYDIEMVDFIKEKAPWELNSNEKIKVAERKKEEGNLLFKSGKYQRAAKKY 419

Query: 342 NKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV 401
           +KAAD VS DGS  DDE+KL KSLRVSCWLN AACCLKL D+ GAI+LC++VLD + HNV
Sbjct: 420 DKAADFVSRDGSLGDDEEKLAKSLRVSCWLNGAACCLKLNDFPGAIKLCTQVLDVEFHNV 479

Query: 402 KALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
           KALYRRAQAY+E  D +LA++DIKKA+E DPQNR
Sbjct: 480 KALYRRAQAYIETEDFLLADVDIKKALEVDPQNR 513

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552270|ref|XP_003544491.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 200/397 (50%), Positives = 254/397 (63%), Gaps = 37/397 (9%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ KK+++ G   + P   DEV + Y   L DGT    T +    + F +  G +   
Sbjct: 148 DGGVVKKIMEKGSGNERPGDLDEVLVKYQVVLDDGTVVVETPE--GGVEFHVKDGHLFPI 205

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRD------SLPPNSVVQFEVELVSWITVVD 158
           L   I+TM + E A     +  +  FG +GR+      S+PPNSV+   +ELVS+  V++
Sbjct: 206 LPKVIMTMTRGEKA--ELIVQPQYAFGEKGREAGSGLCSIPPNSVLHVNIELVSFKPVIN 263

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  ++KKIL++GE                     G   A    EG       V + A
Sbjct: 264 VTGDSKVIKKILKEGE---------------------GVFTAN---EGANVT---VRFTA 296

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
            LEDGTVFEK+G    QPLEFITDEEQVI GLDR  ATMKK E AIV+I+ +Y FGNVE 
Sbjct: 297 MLEDGTVFEKRGIGETQPLEFITDEEQVITGLDRAVATMKKGERAIVSIHPDYAFGNVEV 356

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           +RDLA +P  A + Y+VEMMDFIKEK PWE+N++ KIE AGR KEEGN+LFK G Y+RAG
Sbjct: 357 RRDLAIVPPGATVVYDVEMMDFIKEKAPWELNSKEKIEVAGRMKEEGNVLFKGGNYQRAG 416

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398
           KKY KAAD V EDGSF DDEQK  ++LRVSCWLN AAC LKL D+ GAI+LCS+VLD + 
Sbjct: 417 KKYEKAADFVEEDGSFGDDEQKQAQTLRVSCWLNGAACSLKLNDFPGAIKLCSQVLDVEF 476

Query: 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
            NVKA YRRAQAY+E  D +LA++DIKKA+  DPQNR
Sbjct: 477 CNVKAFYRRAQAYIETGDYLLADVDIKKALVVDPQNR 513

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564113|ref|XP_003550301.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  350 bits (899), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 196/398 (49%), Positives = 255/398 (64%), Gaps = 37/398 (9%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ KK+L+ G   + P   DEV + Y   L DGT    T +    + F +  G +   
Sbjct: 149 DGGVVKKILEKGSGIERPGDLDEVLVKYRVVLGDGTVVVETLE--GGVEFHMKDGHLFPI 206

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRD------SLPPNSVVQFEVELVSWITVVD 158
           L   I+TM + E A     L  +  FG +GR+      S+PPNSV+   +ELVS+  V++
Sbjct: 207 LPKVIMTMTRGEKA--ELILQPQYAFGEKGREAGSGLCSIPPNSVLHVNIELVSFKPVIN 264

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  ++KKIL++GE                         A T  EG       VS+ A
Sbjct: 265 VTGDSKVIKKILKEGEG------------------------AFTANEGANVT---VSFTA 297

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
            LEDGTVFEK+G     PLEFITDEEQVI GLDR  ATMKK E AI++I+ +Y FG+VE 
Sbjct: 298 MLEDGTVFEKRGIGETLPLEFITDEEQVITGLDRAVATMKKGERAIISIHPDYAFGDVEV 357

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           +RD+A +P  + + Y++EMMDFIKEK PWE+N++ KIE AGR KEEGN+LFK G Y+RAG
Sbjct: 358 RRDIAIVPPGSNVVYDIEMMDFIKEKAPWELNSKEKIEVAGRMKEEGNVLFKVGNYQRAG 417

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398
           KKY KAAD V EDGSF  DEQK  ++L+VSCWLNSAAC LKL D+ GAI+LCS+VLD + 
Sbjct: 418 KKYEKAADFVDEDGSFGFDEQKQAQTLKVSCWLNSAACSLKLNDFPGAIKLCSQVLDVEF 477

Query: 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
            NVKA YRRAQAY+E  D +LA++DIKKA+  DPQNR+
Sbjct: 478 CNVKAFYRRAQAYIETGDYLLADVDIKKALVVDPQNRD 515

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840663|ref|XP_002888213.1| hypothetical protein ARALYDRAFT_338459 [Arabidopsis lyrata subsp. lyrata] gi|297334054|gb|EFH64472.1| hypothetical protein ARALYDRAFT_338459 [Arabidopsis lyrata subsp. lyrata]

 Score =  350 bits (898), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 196/397 (49%), Positives = 255/397 (64%), Gaps = 38/397 (9%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+++ G     P   DEV + Y   LLD T    + D+   + F +  G +   
Sbjct: 162 DGGIIKKIIEKGDKNGKPSDLDEVLVKYQVELLDSTIVAKSPDQ--GIQFCVNDGHLCPA 219

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L   I++M   E       +  +  FG EGR S      +PPNSV+  +V LVS+  V+D
Sbjct: 220 LPLAIVSMHPGEKV--KLIVQPQYGFGEEGRSSSGIINAVPPNSVLNIDVLLVSYKPVID 277

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           +  D  + KKIL  GE  +              +  DG  V              VSY+A
Sbjct: 278 VVGDSKVFKKILRDGEGSS--------------VADDGATVT-------------VSYVA 310

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           +LEDGT+FE+K    E+PL F+TDEEQVI GLD+ AATMKK E A++ I+ EYGFGNVE 
Sbjct: 311 KLEDGTIFERKEVGEEEPLVFVTDEEQVITGLDKAAATMKKGEKAVLKISPEYGFGNVEV 370

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           +RDLA +P C+ L YEVEM+DF+KEK P EMNN+ KIEAA RKKEEGNLL+KN KY+RA 
Sbjct: 371 QRDLAKVPQCSTLIYEVEMLDFVKEKTPREMNNEEKIEAANRKKEEGNLLYKNQKYQRAA 430

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398
           KKYNKAAD + E G F  DE+K +K+LRVSC+LN+AAC LKLK+++  I LCS+VLD + 
Sbjct: 431 KKYNKAADFI-ETGKFEGDEEKQLKALRVSCFLNAAACSLKLKNFRETIILCSEVLDIEF 489

Query: 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
            NVKALYRRAQ+++E+ DLI AE+DIKKA+EADP+NR
Sbjct: 490 QNVKALYRRAQSHIEVGDLISAEMDIKKALEADPENR 526

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414869595|tpg|DAA48152.1| TPA: hypothetical protein ZEAMMB73_593378 [Zea mays]

 Score =  325 bits (832), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 183/402 (45%), Positives = 251/402 (62%), Gaps = 42/402 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+LK G  W+ P+  DEV + Y   L DGT       + + + F +  G     
Sbjct: 158 DGGIFKKILKEGEKWENPKDPDEVLVKYEARLEDGT----VVSKSEGVEFTVKDGYFCPA 213

Query: 105 LDNGIITMKKRECAVFTFT----LPSELRFGVEGRDS------LPPNSVVQFEVELVSWI 154
           L   + TMKK E  + T      +P +  FG +GR +      +PPN+ +  ++EL+SW 
Sbjct: 214 LAKAVKTMKKAEKVLLTVKPQCEIPFQNGFGEKGRPAAGEEGAVPPNASLLIDLELISWK 273

Query: 155 TVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
           TV ++  D  I+KK+L++GE    P +              G +V             +V
Sbjct: 274 TVTEIGDDKKILKKVLKEGEGYERPNE--------------GAVV-------------EV 306

Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
             I +L+DG VF KKG+D E+P +F TDEE+VIAGLDR    MKK E A+VTI  EY FG
Sbjct: 307 KIIGKLQDGAVFTKKGHD-EEPFKFKTDEEEVIAGLDRAVLNMKKGEVALVTIPPEYAFG 365

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKY 334
           + E+K+DLA +P  + + YEVE++ F+K+K  W++NN+ KIEAAG+KKEEGN LFK+GKY
Sbjct: 366 STESKQDLAVVPPNSTVIYEVELISFVKDKESWDLNNEEKIEAAGKKKEEGNALFKSGKY 425

Query: 335 ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394
            RA K+Y KAA  +  D SF +DE+K  K L++SC LN+AAC LKLKDY+ A +LC+KVL
Sbjct: 426 ARASKRYEKAAKYIEYDTSFSEDEKKQSKQLKISCNLNNAACKLKLKDYKEAAKLCTKVL 485

Query: 395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
           + D  NVKALYRR QAY+++ADL LAE DIKKA+E DP NR+
Sbjct: 486 ELDSQNVKALYRRVQAYIQLADLELAEADIKKALEIDPDNRD 527

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255589766|ref|XP_002535081.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223524081|gb|EEF27302.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  324 bits (831), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 183/399 (45%), Positives = 252/399 (63%), Gaps = 40/399 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+L  G  W+ P+  DEV +++   L DGT       + D + F +  G     
Sbjct: 154 DGGIFKKILVEGEKWENPKDLDEVLVNFEAQLEDGT----VVAKSDGVEFAVKEGHFCPA 209

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L   + TMKK+E  + T  +  +  FG +G+ +      +PPN+ +Q  +ELVSW TV +
Sbjct: 210 LAKAVKTMKKKEKVLLT--VKPQYGFGEKGKPASNGEGAVPPNATLQITLELVSWKTVSE 267

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           ++ D  ++KKIL++GE    P D              G++V              +  I 
Sbjct: 268 VTDDKKVMKKILKEGEGYERPND--------------GSLVK-------------LKLIG 300

Query: 219 RLEDGTVFEKKGYDGEQPL-EFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277
           +L+DGTVF KKG+D E+ L EF TDEEQVI GLDR    MKK E A+VTI  EY FG  E
Sbjct: 301 KLQDGTVFLKKGHDNEEELFEFTTDEEQVIEGLDRAVLAMKKGEVALVTIAPEYAFGASE 360

Query: 278 AKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERA 337
           +K++LA IP  + +YYEVE++ F+KEK  W+MN Q KIEAAG+KKEEGN+LFK GKY RA
Sbjct: 361 SKQELAVIPPNSTVYYEVELVSFVKEKESWDMNTQEKIEAAGKKKEEGNILFKAGKYARA 420

Query: 338 GKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397
            K+Y KA   +  D SF ++E+K  K+L+V+C LN+AAC L+LK+Y+ A +LC+KVLD +
Sbjct: 421 SKRYEKAVKHIEYDSSFSEEEKKQAKALKVACNLNNAACKLRLKEYKEAEKLCTKVLDLE 480

Query: 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
             NVKALYRRAQAY+++ADL LAE DIKKA+E +P NR+
Sbjct: 481 SRNVKALYRRAQAYIQLADLDLAEFDIKKALEIEPDNRD 519

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226500876|ref|NP_001149790.1| LOC100283417 [Zea mays] gi|195634685|gb|ACG36811.1| peptidyl-prolyl isomerase [Zea mays] gi|414869593|tpg|DAA48150.1| TPA: peptidyl-prolyl isomerase [Zea mays] gi|414869594|tpg|DAA48151.1| TPA: peptidyl-prolyl isomerase [Zea mays]

 Score =  323 bits (829), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 182/398 (45%), Positives = 250/398 (62%), Gaps = 40/398 (10%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+LK G  W+ P+  DEV + Y   L DGT       + + + F +  G     
Sbjct: 158 DGGIFKKILKEGEKWENPKDPDEVLVKYEARLEDGT----VVSKSEGVEFTVKDGYFCPA 213

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELVSWITVVD 158
           L   + TMKK E  + T  +  +  FG +GR +      +PPN+ +  ++EL+SW TV +
Sbjct: 214 LAKAVKTMKKAEKVLLT--VKPQYGFGEKGRPAAGEEGAVPPNASLLIDLELISWKTVTE 271

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           +  D  I+KK+L++GE    P +              G +V             +V  I 
Sbjct: 272 IGDDKKILKKVLKEGEGYERPNE--------------GAVV-------------EVKIIG 304

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           +L+DG VF KKG+D E+P +F TDEE+VIAGLDR    MKK E A+VTI  EY FG+ E+
Sbjct: 305 KLQDGAVFTKKGHD-EEPFKFKTDEEEVIAGLDRAVLNMKKGEVALVTIPPEYAFGSTES 363

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
           K+DLA +P  + + YEVE++ F+K+K  W++NN+ KIEAAG+KKEEGN LFK+GKY RA 
Sbjct: 364 KQDLAVVPPNSTVIYEVELISFVKDKESWDLNNEEKIEAAGKKKEEGNALFKSGKYARAS 423

Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398
           K+Y KAA  +  D SF +DE+K  K L++SC LN+AAC LKLKDY+ A +LC+KVL+ D 
Sbjct: 424 KRYEKAAKYIEYDTSFSEDEKKQSKQLKISCNLNNAACKLKLKDYKEAAKLCTKVLELDS 483

Query: 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
            NVKALYRR QAY+++ADL LAE DIKKA+E DP NR+
Sbjct: 484 QNVKALYRRVQAYIQLADLELAEADIKKALEIDPDNRD 521

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
UNIPROTKB|Q6K5Q1	682	P0579G08.8 "Putative peptidylp	0.510	0.326	0.553	4.8e-114
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.572	0.431	0.544	1.9e-67
UNIPROTKB|Q9XFE4	585	OSJNBa0091C07.4 "OSJNBa0091C07	0.572	0.427	0.534	4e-67
TAIR|locus:2090265	562	ROF1 "AT3G25230" [Arabidopsis	0.565	0.439	0.527	9.7e-64
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.565	0.427	0.525	2e-63
UNIPROTKB|A8J0I6	569	FKB62 "Peptidyl-prolyl cis-tra	0.526	0.404	0.410	6.1e-60
UNIPROTKB|F1NIM4	442	FKBP4 "Uncharacterized protein	0.542	0.536	0.342	2e-57
UNIPROTKB|F1NP08	464	FKBP4 "Uncharacterized protein	0.542	0.510	0.342	2e-57
UNIPROTKB|P27124	458	FKBP4 "Peptidyl-prolyl cis-tra	0.494	0.471	0.346	3.3e-55
ZFIN|ZDB-GENE-030131-514	450	fkbp4 "FK506 binding protein 4	0.471	0.457	0.349	4.2e-55

UNIPROTKB|Q6K5Q1 P0579G08.8 "Putative peptidylprolyl isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 634 (228.2 bits), Expect = 4.8e-114, Sum P(2) = 4.8e-114
 Identities = 124/224 (55%), Positives = 164/224 (73%)

Query:   214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
             V  I +LEDGT+F  +G+DG++P EF TDE+QV+ GLD+   +MKK E A+VTI  EY F
Sbjct:   351 VKLIGKLEDGTIFVTRGHDGDEPFEFKTDEDQVVEGLDKAVLSMKKGEVALVTIPPEYAF 410

Query:   274 GNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMN-NQGKIEAAGRKKEEGNLLFKNG 332
             G+ E ++DL+ +P  + +YYEVE++ F KEK  W+M  N  KIEAA +KK+EGN  FK  
Sbjct:   411 GSDETRQDLSVVPPNSTVYYEVELVSFDKEKESWDMKENTEKIEAAAKKKDEGNAWFKME 470

Query:   333 KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392
             KY RA K+Y KA + +  D SF ++E++L K L+VSC LN+AAC LKLKDY+ A ELC++
Sbjct:   471 KYARASKRYGKALNFIQYDSSFSEEEKQLSKPLKVSCKLNNAACKLKLKDYKEAKELCTE 530

Query:   393 VLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
             VL+ D  NVKA YRRAQA+M + D  LAELDIKKA+E DP NR+
Sbjct:   531 VLELDSMNVKAFYRRAQAHMYLVDFDLAELDIKKALEIDPDNRD 574

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 140/257 (54%), Positives = 182/257 (70%)

Query:   180 GDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEF 239
             GD  ++L K   +L +GT   + P EG    +  V    +L+DGT+F KKG+D  +P EF
Sbjct:   275 GDDKKILKK---VLTEGTGYER-PNEGA---VVKVKITGKLQDGTIFTKKGHDEPEPFEF 327

Query:   240 ITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMD 299
              TDEE+VI G+DR    MK  E A+VTI  EY FG+ E+K+DLA +P  + + YEVE++ 
Sbjct:   328 KTDEEEVIDGIDRAVLNMKNGEVALVTIPPEYAFGSTESKQDLAVVPPNSTVIYEVELVS 387

Query:   300 FIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQ 359
             F+K+K  W++NN  KIE AG KKEEGN LFK GKY RA K+Y KAA  +  D SF +DE+
Sbjct:   388 FVKDKESWDLNNTEKIETAGAKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEK 447

Query:   360 KLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLIL 419
             K  K L+V+C LN+AAC LKLKDY+ A +LC+KVL+ D  NVKALYRRAQAYM++ADL L
Sbjct:   448 KQSKQLKVTCNLNNAACKLKLKDYKQAEKLCTKVLELDSQNVKALYRRAQAYMQLADLEL 507

Query:   420 AELDIKKAIEADPQNRN 436
             AE+DIKKA+E DP NR+
Sbjct:   508 AEVDIKKALEIDPDNRD 524

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q9XFE4 OSJNBa0091C07.4 "OSJNBa0091C07.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 138/258 (53%), Positives = 188/258 (72%)

Query:   180 GDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEF 239
             GD D+ ++K  +  G+G    + P +G    +  V +I +LEDGTVF KKG+DG++P EF
Sbjct:   279 GD-DKRILKKVLKEGEGY---ERPNDGA---VVRVRFIGKLEDGTVFSKKGHDGDEPFEF 331

Query:   240 ITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMD 299
              TDEEQVI GLDR   TMKK E A+V +  ++ FG+ E K+DLA +P+ + ++YEVE++ 
Sbjct:   332 RTDEEQVIEGLDRTVVTMKKGEVALVRLPPQHAFGSTETKQDLAVVPANSTVWYEVELVS 391

Query:   300 FIKEKVPWEM-NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDE 358
             F KEK  W++ +N  KIEAA +KK+EGN+ FK GKY +A K+Y KAA  +  D SF DDE
Sbjct:   392 FEKEKESWDLKDNAEKIEAAAKKKDEGNVWFKMGKYAKASKRYEKAAKYIEYDSSFTDDE 451

Query:   359 QKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLI 418
             +K  K+L+VSC LN+AAC LKLK+Y+ A +LC+KVL+ +  NVKALYRR QAY+E+ADL 
Sbjct:   452 KKQSKALKVSCKLNNAACKLKLKEYREAEKLCTKVLELESTNVKALYRRTQAYIELADLE 511

Query:   419 LAELDIKKAIEADPQNRN 436
             LAELD+KKA+E DP NR+
Sbjct:   512 LAELDVKKALEIDPDNRD 529

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 134/254 (52%), Positives = 178/254 (70%)

Query:   183 DEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGY-DGEQPLEFIT 241
             D  +VK  +  GDG    + P EG    +  V  I +L+DGTVF KKG+ + E+P EF T
Sbjct:   270 DNKVVKKVLKEGDGY---ERPNEGA---VVKVKLIGKLQDGTVFLKKGHGENEEPFEFKT 323

Query:   242 DEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI 301
             DEEQV+ GLDR    MKK E A+VTI+ EY FG+ E++++LA +P  + + YEV+++ F 
Sbjct:   324 DEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEVDLLTFD 383

Query:   302 KEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKL 361
             KE+  W+MN + KIEAA +KKEEGN  FK GKY  A K+Y KA   +  D SF ++E+K 
Sbjct:   384 KERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFSEEEKKQ 443

Query:   362 VKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAE 421
              K+L+V+C LN AAC LKLKDY+ A +LC+KVL+ +  NVKALYRRAQAYME++DL LAE
Sbjct:   444 AKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDLDLAE 503

Query:   422 LDIKKAIEADPQNR 435
              D+KKA+E DP NR
Sbjct:   504 FDVKKALEIDPNNR 517

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 134/255 (52%), Positives = 179/255 (70%)

Query:   183 DEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGT-VFEKKGYD-GEQPLEFI 240
             D  ++K  +  G+G    + P EG    LK    I +L+DGT VF KKG++  E+P EF 
Sbjct:   279 DRKVIKKILKEGEGY---ERPNEGAIVKLK---LIGKLQDGTTVFVKKGHEEDEEPFEFK 332

Query:   241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
              DEEQVI GL++    MKK E A++TI+ EY FG+ E+K++LA IP  + +YYEVE++ F
Sbjct:   333 IDEEQVIEGLEKAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVELVSF 392

Query:   301 IKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQK 360
             IKEK  W+MN Q +IEAAG+KKEEGN+LFK GKY RA K+Y +    +  D +F ++E+K
Sbjct:   393 IKEKESWDMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKK 452

Query:   361 LVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILA 420
               K L+++C LN AAC LKLKDY+ A +L +KVL+ D  NVKA+YRRA AY+E ADL LA
Sbjct:   453 KSKDLKIACNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLA 512

Query:   421 ELDIKKAIEADPQNR 435
             ELDIKKA+E DP N+
Sbjct:   513 ELDIKKALEIDPDNK 527

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|A8J0I6 FKB62 "Peptidyl-prolyl cis-trans isomerase, FKBP-type" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 443 (161.0 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
 Identities = 98/239 (41%), Positives = 147/239 (61%)

Query:   201 KTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKE 260
             + P EG    L+    +  L DG VF K G +G + L F+T+EEQV  GL+     MKK 
Sbjct:   260 RRPNEGASVTLRVTGKV--LPDGPVFMKHG-EGSE-LRFVTEEEQVPEGLELAVMKMKKG 315

Query:   261 EWAIVTINHE-YGFGN----VEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKI 315
             E A+VT+N   YG+G+    V  +     +P+ ++L +EV+++DF   K  WEM++  K 
Sbjct:   316 ETAVVTVNDPAYGYGDKPRTVSVEGSEVEVPAGSRLQFEVDLVDFTNAKETWEMSDIEKA 375

Query:   316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
              AA ++K++GN  FK+GK  RA   +++A   VS D SF D+ + + K ++ SCWLN AA
Sbjct:   376 HAAKQRKDKGNAFFKSGKLARAQSCWDRAVAAVSYDKSFPDEAKAIGKEVKRSCWLNLAA 435

Query:   376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
               LK   ++ A++ C+ VLD D  +VKALYRRAQA+M +AD   AE D+K+A+E +P +
Sbjct:   436 LDLKRAHWKDAVKHCTSVLDIDPTSVKALYRRAQAHMGMADFFEAEQDVKRALELEPDS 494

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|F1NIM4 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 355 (130.0 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
 Identities = 84/245 (34%), Positives = 132/245 (53%)

Query:   195 DGTMVAKTPEEGVEFYLK-DVSYIARLEDGTVFEKKGYDGEQPLEFIT---DEEQVIAGL 250
             DG ++ +  ++G E YLK +   +  ++    +  + +D ++ L F     D   +  GL
Sbjct:   140 DGGIIRRIRKKG-EGYLKPNEGALVEIQFEGRYRDRAFD-KRELRFEIGEGDNYDLPHGL 197

Query:   251 DRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMN 310
             ++    M+K E +I  +   YGFG+   ++    IP  A+L YEV++  F K K  WEMN
Sbjct:   198 EKAIQKMEKSEESIFYLKPNYGFGSTGKEK--FQIPPDAELQYEVKLKSFEKAKESWEMN 255

Query:   311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCW 370
              + K+E +   KE G   FK GKY+RA  +Y K    +  +    D+E    KSLR++  
Sbjct:   256 TEEKLEQSCMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLAAH 315

Query:   371 LNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430
             LN A C LKLK+Y  A+E C+K L+ D  N K L+RR +A++ + D  LA  D +K I+ 
Sbjct:   316 LNLAMCHLKLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELARGDFQKVIQL 375

Query:   431 DPQNR 435
              P N+
Sbjct:   376 YPSNK 380

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1NP08 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 355 (130.0 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
 Identities = 84/245 (34%), Positives = 132/245 (53%)

Query:   195 DGTMVAKTPEEGVEFYLK-DVSYIARLEDGTVFEKKGYDGEQPLEFIT---DEEQVIAGL 250
             DG ++ +  ++G E YLK +   +  ++    +  + +D ++ L F     D   +  GL
Sbjct:   140 DGGIIRRIRKKG-EGYLKPNEGALVEIQFEGRYRDRAFD-KRELRFEIGEGDNYDLPHGL 197

Query:   251 DRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMN 310
             ++    M+K E +I  +   YGFG+   ++    IP  A+L YEV++  F K K  WEMN
Sbjct:   198 EKAIQKMEKSEESIFYLKPNYGFGSTGKEK--FQIPPDAELQYEVKLKSFEKAKESWEMN 255

Query:   311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCW 370
              + K+E +   KE G   FK GKY+RA  +Y K    +  +    D+E    KSLR++  
Sbjct:   256 TEEKLEQSCMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLAAH 315

Query:   371 LNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430
             LN A C LKLK+Y  A+E C+K L+ D  N K L+RR +A++ + D  LA  D +K I+ 
Sbjct:   316 LNLAMCHLKLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELARGDFQKVIQL 375

Query:   431 DPQNR 435
              P N+
Sbjct:   376 YPSNK 380

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

UNIPROTKB|P27124 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4" [Oryctolagus cuniculus (taxid:9986)]

 Score = 339 (124.4 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
 Identities = 79/228 (34%), Positives = 127/228 (55%)

Query:   218 ARLEDGTVFEK--KGY--D---GEQPLEFITDEEQVI---AGLDRVAATMKKEEWAIVTI 267
             AR  DG + E   +GY  D    ++ L F   E + +    GL++    M+K E +I+ +
Sbjct:   162 ARPNDGAIVEVALEGYYKDRLFDQRELRFEVGEGESLDLPCGLEKAIQRMEKGEHSILYL 221

Query:   268 NHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNL 327
                Y FGN  A ++   IP  A+L YEV +  F K K  WEM+++ K+E +   KE G +
Sbjct:   222 KPSYAFGN--AGKEKFQIPPYAELKYEVHLKSFEKAKESWEMSSEEKLEQSAIVKERGTV 279

Query:   328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAI 387
              FK GKY++A  +Y K    +  + SF  +E +  ++LR++  LN A C LKL+ +  A+
Sbjct:   280 YFKEGKYKQALLQYKKIVSWLEYESSFSSEEVQKAQALRLASHLNLAMCHLKLQAFSAAV 339

Query:   388 ELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
             E C+K L+ D +N K L+RR +A++ + D  LA  D +K ++  P N+
Sbjct:   340 ESCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKVLQLYPSNK 387

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=ISS

GO:0010977 "negative regulation of neuron projection development" evidence=IDA

GO:0031111 "negative regulation of microtubule polymerization or depolymerization" evidence=IDA

GO:0044295 "axonal growth cone" evidence=ISS

GO:0048156 "tau protein binding" evidence=IPI

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

ZFIN|ZDB-GENE-030131-514 fkbp4 "FK506 binding protein 4" [Danio rerio (taxid:7955)]

 Score = 330 (121.2 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
 Identities = 74/212 (34%), Positives = 124/212 (58%)

Query:   227 EKKGYDGEQPLEF-ITDEEQV--IAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
             E + +D E+ L+F + D E +    G+++    M++ E A+ TI  +YGFG   +++   
Sbjct:   174 EDRVFD-ERELKFEVGDGENLGLPLGVEKALQAMEQGEEALFTIKPKYGFGTAGSEK--Y 230

Query:   284 TIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNK 343
              IP  A L Y+++M  F K K  WEMN   K+E +   KE+G   FK GKY++A  +Y +
Sbjct:   231 NIPPNATLQYKIKMKAFEKAKESWEMNTIEKLEQSVIVKEKGTQYFKEGKYKQAIVQYKR 290

Query:   344 AADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA 403
                 +  + S   D+++  K+LR++ +LN A C LKL+D   A+E C K L+ D +N KA
Sbjct:   291 IVSWLEHESSMQPDDEEKAKALRLAAYLNLAMCYLKLQDANPALENCDKALELDANNEKA 350

Query:   404 LYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
             L+RR +A + + +  +A++D ++ IE  P N+
Sbjct:   351 LFRRGEALVVMKEFDMAKVDFQRVIELYPANK 382

GO:0006457 "protein folding" evidence=IEA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0016020 "membrane" evidence=IBA

GO:0005528 "FK506 binding" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9TRY0	FKBP4_BOVIN	5, ., 2, ., 1, ., 8	0.3380	0.8672	0.8257	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.921
4th Layer	5.2.1.8	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.II.4140.1 hypothetical protein (538 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	437
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	2e-26
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	5e-21
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	6e-14
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-13
PRK10902	269	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-	5e-10
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	4e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-08
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	5e-08
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	2e-07
TIGR03516	177	TIGR03516, ppisom_GldI, peptidyl-prolyl isomerase,	4e-07
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	9e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-06
PRK15095	156	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-	5e-06
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	1e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-05
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	2e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.001
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.002

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score =  101 bits (254), Expect = 2e-26
 Identities = 44/95 (46%), Positives = 58/95 (61%), Gaps = 4/95 (4%)

Query: 59  WDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA 118
            +  + GD VT+HY G L DGT FDS++DR  P  F LG+GQV  G D G++ MK  E  
Sbjct: 2   PEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGE-- 59

Query: 119 VFTFTLPSELRFGVEGR--DSLPPNSVVQFEVELV 151
               T+P EL +G EG     +PPN+ + FEVEL+
Sbjct: 60  KRKLTIPPELAYGEEGLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 90.6 bits (225), Expect = 5e-21
 Identities = 50/108 (46%), Positives = 63/108 (58%), Gaps = 6/108 (5%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG++ K+LK G D   P+ GD VT+HY GTL+DGT FDS+ DR  P  F L  G V  G 
Sbjct: 101 SGLQYKVLKAG-DGAAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPL--GGVIPGW 157

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVS 152
           D G+  MK         T+P EL +G  G    +PPNS + FEVEL+ 
Sbjct: 158 DEGLQGMKVGG--KRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLD 203

Length = 205

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 66.9 bits (164), Expect = 6e-14
 Identities = 32/84 (38%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           V Y  +LEDGTVF+    D  +P EF     QVI G D     MK  E   +TI  E  +
Sbjct: 13  VHYTGKLEDGTVFDS-SKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEKRKLTIPPELAY 71

Query: 274 GNVEAKRDLATIPSCAKLYYEVEM 297
           G          IP  A L +EVE+
Sbjct: 72  GEEGLAGG--VIPPNATLVFEVEL 93

Length = 94

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 15/112 (13%)

Query: 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK 381
              GNL +K G Y+ A + Y KA +        +D +           + N AA   KL 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALE--------LDPDNA-------DAYYNLAAAYYKLG 48

Query: 382 DYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433
            Y+ A+E   K L+ D  N KA Y    AY ++     A    +KA+E DP 
Sbjct: 49  KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 59.8 bits (145), Expect = 5e-10
 Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 5/107 (4%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           +G+  K+ K G   + P+  D V ++Y GTL+DG +FD++  R +PL+F+L    V  G 
Sbjct: 146 TGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGW 202

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVS 152
             G+  +KK         +P EL +G  G   +P NS + F+VEL+ 
Sbjct: 203 TEGLKNIKKG--GKIKLVIPPELAYGKAGVPGIPANSTLVFDVELLD 247

Length = 269

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           GD V++HY   + DG   D+T + Y PLTF +G GQ+  GL+  ++  +  E   FT  +
Sbjct: 6   GDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGE--EFTVEI 63

Query: 125 PSELRFGV 132
           P E  FG 
Sbjct: 64  PPEDAFGE 71

Length = 174

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 369 CWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEI-ADLILAELDIKKA 427
              N      KL DY  AIE   K L+ D  N +A Y  A AY+++  D   A  D++KA
Sbjct: 5   ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKA 64

Query: 428 IEADP 432
           +E DP
Sbjct: 65  LELDP 69

Length = 69

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 52.5 bits (126), Expect = 5e-08
 Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 12/110 (10%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG++ ++L  G +   P   D V +HY G L+DGT FDS+  R +P  F +    V  G 
Sbjct: 102 SGLQFRVLTQG-EGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNG--VIPGW 158

Query: 106 DNGIITM---KKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELV 151
              +  M    K E      T+P EL +G  G   S+PP S + FEVEL+
Sbjct: 159 IEALTLMPVGSKWE-----LTIPHELAYGERGAGASIPPFSTLVFEVELL 203

Length = 206

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 14/115 (12%)

Query: 187 VKYQVM-LGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQ 245
           ++Y+V+  GDG    K     V        Y   L DGTVF+   YD  QP EF      
Sbjct: 103 LQYKVLKAGDGAAPKKGDTVTVH-------YTGTLIDGTVFD-SSYDRGQPAEFPLG--G 152

Query: 246 VIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
           VI G D     MK      +TI  E  +G    +     IP  + L +EVE++D 
Sbjct: 153 VIPGWDEGLQGMKVGGKRKLTIPPELAYG---ERGVPGVIPPNSTLVFEVELLDV 204

Length = 205

>gnl|CDD|132555 TIGR03516, ppisom_GldI, peptidyl-prolyl isomerase, gliding motility-associated

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 54  KNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMK 113
           K+  +  TPEFGD VT  Y    LDG    S  +   P T+K+    + +GL +G+  MK
Sbjct: 78  KDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEE-LGPQTYKVDQQDLFSGLRDGLKLMK 136

Query: 114 KRECAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVS 152
           + E A F F  PS   +G  G ++ + PN  +   V L++
Sbjct: 137 EGETATFLF--PSHKAYGYYGDQNKIGPNLPIISTVTLLN 174

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype. Length = 177

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 50.8 bits (121), Expect = 9e-07
 Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 19/151 (12%)

Query: 274 GNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGK 333
           G  E K+  +T P  A +    E+ + I E     ++ + + + A + KE+GN  ++N  
Sbjct: 86  GKTEEKK--STAPKNAPVEPADELPE-IDESSVANLSEEERKKYAAKLKEKGNKAYRNKD 142

Query: 334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393
           + +A K Y+KA +C   D  +               + N AAC   L D++  +E  +  
Sbjct: 143 FNKAIKLYSKAIEC-KPDPVY---------------YSNRAACHNALGDWEKVVEDTTAA 186

Query: 394 LDCDCHNVKALYRRAQAYMEIADLILAELDI 424
           L+ D    KAL RRA AY  +     A LD+
Sbjct: 187 LELDPDYSKALNRRANAYDGLGKYADALLDL 217

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 25/66 (37%), Positives = 31/66 (46%)

Query: 369 CWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAI 428
             LN      KL DY  A+E   K L+ D  N  A Y  A AY ++     A  D +KA+
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 429 EADPQN 434
           E DP N
Sbjct: 62  ELDPDN 67

Length = 100

>gnl|CDD|237908 PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 20/116 (17%)

Query: 68  VTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSE 127
           V +H+   L DG+  +STR+   P  F+LG G ++ GL+  ++ +K  +    TF+L  E
Sbjct: 11  VLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKK--TFSLEPE 68

Query: 128 LRFGVEGRDSLPPNSVVQF------------EVELVSWITVVDLSKDGGIVKKILE 171
             FGV   D      ++Q+            E+  +   T +D S+  G++++I  
Sbjct: 69  AAFGVPSPD------LIQYFSRRDFMDAGEPEIGAIMLFTAMDGSEMPGVIREING 118

Length = 156

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 18/68 (26%), Positives = 32/68 (47%)

Query: 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429
           WL  AACC  LK+Y+ AI+  +     D  + +  +  A+  + + +   A   +  AIE
Sbjct: 54  WLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIE 113

Query: 430 ADPQNRNH 437
              +N  +
Sbjct: 114 ICGENPEY 121

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 16/83 (19%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
           + A   K  GN LFK G Y+ A + Y KA +   ++                  + N A 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDN---------------AEAYYNLAL 45

Query: 376 CCLKL-KDYQGAIELCSKVLDCD 397
             LKL KDY+ A+E   K L+ D
Sbjct: 46  AYLKLGKDYEEALEDLEKALELD 68

Length = 69

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           + Y  ++EDG V +    +   PL FI    Q+I GL+      +  E   V I  E  F
Sbjct: 11  LHYTLKVEDGEVVDTTDENYG-PLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAF 69

Query: 274 G 274
           G
Sbjct: 70  G 70

Length = 174

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 25/143 (17%), Positives = 38/143 (26%), Gaps = 1/143 (0%)

Query: 296 EMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV 355
            +++     +         +E      E        G          K            
Sbjct: 24  ALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLE 83

Query: 356 DDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRA-QAYMEI 414
              +  +        LN       L  Y+ A+EL  K L  D     A    A  A  E+
Sbjct: 84  KALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYEL 143

Query: 415 ADLILAELDIKKAIEADPQNRNH 437
            D   A    +KA+E DP+    
Sbjct: 144 GDYEEALELYEKALELDPELNEL 166

Length = 291

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 39.4 bits (90), Expect = 0.002
 Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSA 374
           +E      E    L   G    A  +Y +A + +       +   KL         LN  
Sbjct: 157 LELDPELNELAEALLALGALLEALGRYEEALELL-------EKALKLNPDDDAEALLNLG 209

Query: 375 ACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP 432
              LKL  Y+ A+E   K L+ D  N +ALY  A   +E+     A   ++KA+E DP
Sbjct: 210 LLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267

Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	437
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.95
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.95
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.95
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.95
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.9
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.9
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.89
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.89
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.88
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.88
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.87
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.85
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.79
KOG0553	304	consensus TPR repeat-containing protein [General f	99.79
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.78
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.77
KOG4234	271	consensus TPR repeat-containing protein [General f	99.75
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.73
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.7
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.66
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.63
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.63
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.6
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.6
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.58
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.57
PRK15359	144	type III secretion system chaperone protein SscB;	99.53
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.5
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.5
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.46
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.45
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.43
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.43
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.39
PRK11189	296	lipoprotein NlpI; Provisional	99.35
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.33
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.27
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.27
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.25
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.25
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.23
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.21
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.19
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.16
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.15
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.15
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.14
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.14
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.11
KOG1125	579	consensus TPR repeat-containing protein [General f	99.09
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.07
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.06
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.03
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.02
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.01
PRK15331	165	chaperone protein SicA; Provisional	99.01
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.0
PRK12370	553	invasion protein regulator; Provisional	98.98
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.98
PRK15359	144	type III secretion system chaperone protein SscB;	98.98
KOG4555	175	consensus TPR repeat-containing protein [Function	98.96
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	98.96
PRK10803	263	tol-pal system protein YbgF; Provisional	98.94
PF13512	142	TPR_18: Tetratricopeptide repeat	98.93
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.93
KOG1126	638	consensus DNA-binding cell division cycle control	98.93
KOG1126	638	consensus DNA-binding cell division cycle control	98.93
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	98.92
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.91
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.89
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.89
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.88
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.88
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.87
PF13371	73	TPR_9: Tetratricopeptide repeat	98.87
PRK12370	553	invasion protein regulator; Provisional	98.86
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.83
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	98.82
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.81
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.8
PRK11189	296	lipoprotein NlpI; Provisional	98.8
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.79
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.78
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.78
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.77
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.77
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.75
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.75
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.74
PLN02789	320	farnesyltranstransferase	98.74
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.73
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.72
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.72
PRK01490	435	tig trigger factor; Provisional	98.7
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.69
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.69
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.68
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.68
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	98.68
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.67
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.67
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.67
KOG2076	895	consensus RNA polymerase III transcription factor	98.66
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.66
PF12688	120	TPR_5: Tetratrico peptide repeat	98.65
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.65
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.65
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.64
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.64
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.64
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.63
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.59
PF13371	73	TPR_9: Tetratricopeptide repeat	98.59
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.58
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.58
KOG2003	840	consensus TPR repeat-containing protein [General f	98.57
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.54
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.54
KOG2076	895	consensus RNA polymerase III transcription factor	98.53
KOG0553	304	consensus TPR repeat-containing protein [General f	98.53
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.52
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.52
PLN02789	320	farnesyltranstransferase	98.5
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.47
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.44
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.43
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.42
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.42
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.39
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.39
PRK14574	822	hmsH outer membrane protein; Provisional	98.39
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.38
KOG1310	758	consensus WD40 repeat protein [General function pr	98.38
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.37
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.37
KOG1129	478	consensus TPR repeat-containing protein [General f	98.33
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.32
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.3
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.28
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.27
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.27
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.27
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.27
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.26
KOG1129	478	consensus TPR repeat-containing protein [General f	98.2
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.2
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.2
PF13431	34	TPR_17: Tetratricopeptide repeat	98.19
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.19
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.18
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.17
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.17
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.16
PRK14574	822	hmsH outer membrane protein; Provisional	98.12
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	98.11
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.11
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.1
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.09
KOG1125	579	consensus TPR repeat-containing protein [General f	98.05
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.05
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.05
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.03
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.02
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.01
PRK11906	458	transcriptional regulator; Provisional	98.01
PF13428	44	TPR_14: Tetratricopeptide repeat	98.0
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.99
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.99
PRK11906	458	transcriptional regulator; Provisional	97.98
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.98
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.89
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.87
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.87
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.87
KOG4555	175	consensus TPR repeat-containing protein [Function	97.87
PF12688	120	TPR_5: Tetratrico peptide repeat	97.87
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.86
PRK10803	263	tol-pal system protein YbgF; Provisional	97.86
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.83
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.81
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.78
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.77
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.76
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.74
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.74
PF13512	142	TPR_18: Tetratricopeptide repeat	97.73
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.71
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.71
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.71
PRK15331	165	chaperone protein SicA; Provisional	97.69
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.68
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.67
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	97.67
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.66
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.64
PF13428	44	TPR_14: Tetratricopeptide repeat	97.6
KOG4234	271	consensus TPR repeat-containing protein [General f	97.6
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.59
KOG2003	840	consensus TPR repeat-containing protein [General f	97.55
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.54
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.54
PRK10941	269	hypothetical protein; Provisional	97.53
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.52
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.52
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.48
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.47
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.45
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.4
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.4
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.39
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.39
PRK01490	435	tig trigger factor; Provisional	97.38
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.37
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.37
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.33
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.31
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.28
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.28
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.26
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.24
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.22
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.21
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.2
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.18
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.17
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.12
PF13431	34	TPR_17: Tetratricopeptide repeat	97.12
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.11
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.1
KOG1586	288	consensus Protein required for fusion of vesicles	97.06
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.06
KOG1586	288	consensus Protein required for fusion of vesicles	97.03
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.02
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.01
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.95
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.95
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.91
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	96.88
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.84
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.84
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.79
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.79
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.77
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.72
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.7
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.66
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.64
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.63
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.62
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.59
KOG3364	149	consensus Membrane protein involved in organellar	96.58
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.54
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.5
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.48
PRK04841	903	transcriptional regulator MalT; Provisional	96.46
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.46
PRK04841	903	transcriptional regulator MalT; Provisional	96.24
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.15
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.1
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.1
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.08
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	96.07
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.92
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.92
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.87
KOG1585	308	consensus Protein required for fusion of vesicles	95.86
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.78
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.78
COG2912	269	Uncharacterized conserved protein [Function unknow	95.75
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.68
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.58
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.52
KOG2471	696	consensus TPR repeat-containing protein [General f	95.51
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.48
PRK10941	269	hypothetical protein; Provisional	95.45
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.45
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.45
KOG2471	696	consensus TPR repeat-containing protein [General f	95.42
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.41
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.24
PLN03218	1060	maturation of RBCL 1; Provisional	95.08
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.07
KOG3364	149	consensus Membrane protein involved in organellar	95.05
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	95.01
PLN03077	857	Protein ECB2; Provisional	94.95
COG3947	361	Response regulator containing CheY-like receiver a	94.95
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.93
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.81
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.8
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.75
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.73
PLN03218	1060	maturation of RBCL 1; Provisional	94.72
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	94.65
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.29
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.24
KOG1585	308	consensus Protein required for fusion of vesicles	94.24
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.23
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.17
KOG1915	677	consensus Cell cycle control protein (crooked neck	93.93
KOG1915	677	consensus Cell cycle control protein (crooked neck	93.91
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	93.85
KOG2796	366	consensus Uncharacterized conserved protein [Funct	93.83
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.77
KOG4814	872	consensus Uncharacterized conserved protein [Funct	93.69
PLN03077	857	Protein ECB2; Provisional	93.33
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	93.3
KOG2300	629	consensus Uncharacterized conserved protein [Funct	93.12
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.09
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.93
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.79
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	92.75
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	92.72
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.69
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	92.62
KOG2300	629	consensus Uncharacterized conserved protein [Funct	92.54
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.49
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	92.3
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	92.19
KOG4507	886	consensus Uncharacterized conserved protein, conta	91.89
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	91.73
KOG1550	552	consensus Extracellular protein SEL-1 and related	91.19
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.18
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	91.03
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	90.98
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	90.94
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	90.75
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.13
COG2912	269	Uncharacterized conserved protein [Function unknow	89.99
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	89.45
COG5191	435	Uncharacterized conserved protein, contains HAT (H	89.04
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	88.98
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	88.6
COG3898	531	Uncharacterized membrane-bound protein [Function u	88.51
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	88.35
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	87.82
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	87.8
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	87.8
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	87.49
COG3898	531	Uncharacterized membrane-bound protein [Function u	87.46
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	87.39
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	87.21
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	87.1
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	86.8
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	86.78
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	86.77
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	86.65
PF04212	69	MIT: MIT (microtubule interacting and transport) d	86.61
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	86.5
KOG1550	552	consensus Extracellular protein SEL-1 and related	86.34
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	86.0
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	85.88
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	85.76
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	85.59
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	85.57
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	85.43
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	85.32
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	84.94
KOG2422	665	consensus Uncharacterized conserved protein [Funct	84.9
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	84.75
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	84.6
COG3118	304	Thioredoxin domain-containing protein [Posttransla	84.49
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	83.6
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	83.54
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	83.25
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	82.44
TIGR02710	380	CRISPR-associated protein, TIGR02710 family. Membe	82.1
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	81.85
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	81.8
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	81.63
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	81.55
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	80.88
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	80.8
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	80.72

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.4e-59  Score=436.32  Aligned_cols=323  Identities=47%  Similarity=0.761  Sum_probs=297.4

Q ss_pred             EccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCC
Q 013755           54 KNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVE  133 (437)
Q Consensus        54 ~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~  133 (437)
                      ++|+|+++|..||.|.+||++++.||+.|+||.+ +.|+.|.+|.|.+|.||+.++..|+.|+                .
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~g~----------------~   63 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKKGE----------------A   63 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccccc----------------c
Confidence            4799999999999999999999999999999999 7999999999999999999999999844                3


Q ss_pred             CCC-CCCCCCcEEEEEEEeceeeeeccCCCccceEEEEecccc-CCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEE
Q 013755          134 GRD-SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGER-DASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYL  211 (437)
Q Consensus       134 ~~~-~i~~~~~~~f~v~l~~~~~~~d~~~dg~v~k~i~~~G~g-~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~  211 (437)
                      +.+ .||++.++.|+|+|.          ||+++|+|+++|.| ..+|..+..|.++|.+.+.++               
T Consensus        64 ~~pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~---------------  118 (397)
T KOG0543|consen   64 GSPPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG---------------  118 (397)
T ss_pred             CCCCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc---------------
Confidence            444 799999999999987          89999999999999 889999888888776666554               


Q ss_pred             EEEEEEEEecCccEEeecCCCCCCCeEEEcCC-CCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCce
Q 013755          212 KDVSYIARLEDGTVFEKKGYDGEQPLEFITDE-EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAK  290 (437)
Q Consensus       212 ~~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~-~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~  290 (437)
                                   +|+++    ...+.|.+|+ ..||.||+.||++|++||++.|+|+|+|+||..+...  +.|||+++
T Consensus       119 -------------~f~~~----~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~--p~IPPnA~  179 (397)
T KOG0543|consen  119 -------------VFDQR----ELRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEP--PLIPPNAT  179 (397)
T ss_pred             -------------ceecc----ccceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCC--CCCCCCce
Confidence                         34433    3458888888 5899999999999999999999999999999544432  48999999


Q ss_pred             EEEEEEEeeee-cccCCCCCChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHH
Q 013755          291 LYYEVEMMDFI-KEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSC  369 (437)
Q Consensus       291 l~~~vel~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~  369 (437)
                      +.|+|+|++|. +....|.+..++++..+...++.||.+|+.|+|..|+..|++|+..+.+...+++++......++..+
T Consensus       180 l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~  259 (397)
T KOG0543|consen  180 LLYEVELLDFELKEDESWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLAC  259 (397)
T ss_pred             EEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHH
Confidence            99999999999 88999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCCC
Q 013755          370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH  437 (437)
Q Consensus       370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~  437 (437)
                      ++|+|.||+++++|.+|+..|+++|+++|+|+|||||+|+||+.+++|+.|+.+|++|++++|+|+++
T Consensus       260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~  327 (397)
T KOG0543|consen  260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAA  327 (397)
T ss_pred             hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999753

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=8.8e-28  Score=209.85  Aligned_cols=247  Identities=25%  Similarity=0.373  Sum_probs=202.0

Q ss_pred             CccceEEEEeccccC-CCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755          162 DGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (437)
Q Consensus       162 dg~v~k~i~~~G~g~-~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~  240 (437)
                      ..++.|+|+..|.|. ..-.+|..|++||.....+.                         .+++.|+| ...+.|++++
T Consensus         9 ~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e-------------------------~~tviDDs-Rk~gkPmeii   62 (329)
T KOG0545|consen    9 VEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDE-------------------------ERTVIDDS-RKVGKPMEII   62 (329)
T ss_pred             chhhhHhhccCCCccCccccCCceEEEEEEecccCc-------------------------ccccccch-hhcCCCeEEe
Confidence            356789999999983 23446777777776554332                         23455555 5678999999


Q ss_pred             cCCCCcchHHHHHhcccccCcEEEEEEcCC----CCCCcc-------cccc--------c----c-----------ccCC
Q 013755          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHE----YGFGNV-------EAKR--------D----L-----------ATIP  286 (437)
Q Consensus       241 lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~----~~yg~~-------~~~~--------~----~-----------~~ip  286 (437)
                      +|..--.+-|+.+|.+|+++|.+.|+|+-.    |.|-+.       |..+        .    +           ....
T Consensus        63 iGkkFkL~VwE~il~tM~v~EvaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~k  142 (329)
T KOG0545|consen   63 IGKKFKLEVWEIILTTMRVHEVAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQK  142 (329)
T ss_pred             eccccccHHHHHHHHHHhhhhHHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhh
Confidence            999999999999999999999999999732    222111       0000        0    0           0011


Q ss_pred             CCceEEEEEEEeeeecc----cCCCCCChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccC---CCCChHHH
Q 013755          287 SCAKLYYEVEMMDFIKE----KVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED---GSFVDDEQ  359 (437)
Q Consensus       287 ~~~~l~~~vel~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~---~~~~~~~~  359 (437)
                      ..++|+|.|+|+.++..    .++|+|+.+++++....+.++||.+|+.|+|.+|...|+.|+.++.+.   ....+.+|
T Consensus       143 nPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW  222 (329)
T KOG0545|consen  143 NPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW  222 (329)
T ss_pred             CCCceEeehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH
Confidence            23589999999999754    578999999999999999999999999999999999999999887553   23446899


Q ss_pred             HHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          360 KLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       360 ~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      .++......+++|.++|++..++|-+++++|..+|..+|.|.+|||++|+++...-+.++|.++|.++|+++|.-
T Consensus       223 ~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  223 LELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             HHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999964

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=5.8e-28  Score=177.58  Aligned_cols=105  Identities=41%  Similarity=0.768  Sum_probs=102.1

Q ss_pred             CeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCC
Q 013755           47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPS  126 (437)
Q Consensus        47 g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~  126 (437)
                      |+.++++..|+|...|+.||+|++||++.+.||+.|+||.+++.||.|.+|.|++|.||++++..|.+|+++++  +|.|
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakL--ti~p   79 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKL--TISP   79 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhcccccccee--eecc
Confidence            78999999999988899999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             CCCCCCCCCC-CCCCCCcEEEEEEEece
Q 013755          127 ELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (437)
Q Consensus       127 ~~ayg~~~~~-~i~~~~~~~f~v~l~~~  153 (437)
                      ++|||..+.+ .||||++|+|+|||+++
T Consensus        80 d~aYG~~G~p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   80 DYAYGPRGHPGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             ccccCCCCCCCccCCCcEEEEEEEEEec
Confidence            9999999988 99999999999999875

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.2e-27  Score=198.49  Aligned_cols=176  Identities=28%  Similarity=0.408  Sum_probs=133.9

Q ss_pred             EEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCCCCCcEEEEEEEeceeeeecc---CCCccceEEEE
Q 013755           94 FKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVVDL---SKDGGIVKKIL  170 (437)
Q Consensus        94 ~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~~~~~~~f~v~l~~~~~~~d~---~~dg~v~k~i~  170 (437)
                      |.+|.+.+|++++.++.+|..|+++++  .+||+++||..+..   ....+++.+.+.......-.   ..+..+.-.++
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkv--v~pp~l~fg~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~   75 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKV--VIPPHLGFGEGGRG---DLNILVITILLVLLFRASAAEKWNPDEELQIGVL   75 (188)
T ss_pred             CcccceEEecCHHHHhhhhhcccccee--ccCCcccccccccc---cccceEEEeeeeehhhhhhhhhcCCCCceeEEEE
Confidence            357888999999999999999999999  99999999955432   22235666665554432211   12222222222


Q ss_pred             eccc-cCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEEcCCCCcchH
Q 013755          171 EKGE-RDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAG  249 (437)
Q Consensus       171 ~~G~-g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~g  249 (437)
                      ..-. .......+|.+.                           +||++.+.||+.|||| |+++.|++|+||.++||+|
T Consensus        76 ~~p~~C~~kak~GD~l~---------------------------~HY~g~leDGt~fdSS-~~rg~P~~f~LG~gqVIkG  127 (188)
T KOG0549|consen   76 KKPEECPEKAKKGDTLH---------------------------VHYTGSLEDGTKFDSS-YSRGAPFTFTLGTGQVIKG  127 (188)
T ss_pred             ECCccccccccCCCEEE---------------------------EEEEEEecCCCEEeee-ccCCCCEEEEeCCCceecc
Confidence            2211 112222233322                           4888888999999999 9999999999999999999


Q ss_pred             HHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeecccC
Q 013755          250 LDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKV  305 (437)
Q Consensus       250 l~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~~~  305 (437)
                      ||++|.+|++||+..++|||+++||+.|.+.   .||+++.|+|+|+|+.+.....
T Consensus       128 ~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~~~---~IP~~A~LiFdiELv~i~~~~~  180 (188)
T KOG0549|consen  128 WDQGLLGMCVGEKRKLIIPPHLGYGERGAPP---KIPGDAVLIFDIELVKIERGPP  180 (188)
T ss_pred             HhHHhhhhCcccceEEecCccccCccCCCCC---CCCCCeeEEEEEEEEEeecCCC
Confidence            9999999999999999999999999999886   5999999999999999987643

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=5.5e-28  Score=207.01  Aligned_cols=112  Identities=44%  Similarity=0.671  Sum_probs=106.2

Q ss_pred             CCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCc
Q 013755           37 VGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRE  116 (437)
Q Consensus        37 ~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~  116 (437)
                      ....+.++++|++|++++.|+| +.|..||.|+|||++++.||++||||+++|.|+.|.+|  ++|+||.++|.+|++|+
T Consensus        92 k~~~v~~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~  168 (205)
T COG0545          92 KEKGVKTLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGG  168 (205)
T ss_pred             ccCCceECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCc
Confidence            3445678999999999999999 99999999999999999999999999999999999999  99999999999999999


Q ss_pred             eEEEEEecCCCCCCCCCCCC-CCCCCCcEEEEEEEece
Q 013755          117 CAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (437)
Q Consensus       117 ~~~~~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~  153 (437)
                      ++++  +|||++|||..+.+ .||||++|+|+|+|+++
T Consensus       169 k~~l--~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         169 KRKL--TIPPELAYGERGVPGVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             eEEE--EeCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence            9999  99999999999966 69999999999999876

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.90  E-value=1.5e-23  Score=186.57  Aligned_cols=111  Identities=35%  Similarity=0.555  Sum_probs=105.1

Q ss_pred             CCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCce
Q 013755           38 GEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKREC  117 (437)
Q Consensus        38 ~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~  117 (437)
                      ...+.++++|++|+++++|+| ..|..||.|.|||++++.||++|+||+.++.|+.|.+|  ++++||+++|.+|++|++
T Consensus        94 ~~gv~~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k  170 (206)
T PRK11570         94 KEGVNSTESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSK  170 (206)
T ss_pred             cCCcEECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCE
Confidence            445678999999999999999 89999999999999999999999999998899999997  799999999999999999


Q ss_pred             EEEEEecCCCCCCCCCCCC-CCCCCCcEEEEEEEece
Q 013755          118 AVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (437)
Q Consensus       118 ~~~~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~  153 (437)
                      ++|  +|||++|||..+.+ .|||+++++|+|+|+++
T Consensus       171 ~~~--~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        171 WEL--TIPHELAYGERGAGASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             EEE--EECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence            999  99999999999887 89999999999999876

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.6e-23  Score=154.26  Aligned_cols=107  Identities=30%  Similarity=0.506  Sum_probs=97.3

Q ss_pred             cceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEEcCC
Q 013755          164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE  243 (437)
Q Consensus       164 ~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~  243 (437)
                      ++-+.++..|+|...|..++.|++                           ||++.|.||+.|||+ .+++.|+.|.+|.
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~---------------------------hYtg~L~dG~kfDSs-~dr~kPfkf~IGk   53 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTV---------------------------HYTGTLQDGKKFDSS-RDRGKPFKFKIGK   53 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEE---------------------------EEEeEecCCcEeecc-cccCCCeeEEecC
Confidence            367889999999999999998887                           556667788889988 8999999999999


Q ss_pred             CCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755          244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (437)
Q Consensus       244 ~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~  301 (437)
                      +.||.|||+++..|.+||++.+.|+|+|+||..|.+.   .||||++|.|+|||++++
T Consensus        54 geVIkGwdegv~qmsvGekakLti~pd~aYG~~G~p~---~IppNatL~FdVEll~v~  108 (108)
T KOG0544|consen   54 GEVIKGWDEGVAQMSVGEKAKLTISPDYAYGPRGHPG---GIPPNATLVFDVELLKVN  108 (108)
T ss_pred             cceeechhhcchhccccccceeeeccccccCCCCCCC---ccCCCcEEEEEEEEEecC
Confidence            9999999999999999999999999999999999776   799999999999999863

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=7.6e-23  Score=180.15  Aligned_cols=108  Identities=34%  Similarity=0.608  Sum_probs=104.3

Q ss_pred             eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEc-CCcEEecccCCCCCeE-EEeCCccccccHHHHhccccCCceEE
Q 013755           42 GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLL-DGTKFDSTRDRYDPLT-FKLGTGQVATGLDNGIITMKKRECAV  119 (437)
Q Consensus        42 ~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~-~G~~~~st~~~~~p~~-~~~g~~~~~~g~~~~l~~m~~G~~~~  119 (437)
                      .++++||+|+.++.|.| +.+..|+.|.|||++++. +|++|+++... .|+. |.+|.+.+|+||+.+|.||++|++++
T Consensus       116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr  193 (226)
T KOG0552|consen  116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR  193 (226)
T ss_pred             eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence            47899999999999999 999999999999999998 99999999886 8999 99999999999999999999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCCCCcEEEEEEEece
Q 013755          120 FTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSW  153 (437)
Q Consensus       120 ~~~~ip~~~ayg~~~~~~i~~~~~~~f~v~l~~~  153 (437)
                      |  +|||++|||..+.+.||+|++|+|+|+|+.+
T Consensus       194 v--iIPp~lgYg~~g~~~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  194 V--IIPPELGYGKKGVPEIPPNSTLVFDVELLSV  225 (226)
T ss_pred             E--EeCccccccccCcCcCCCCCcEEEEEEEEec
Confidence            9  9999999999999999999999999999875

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1.3e-22  Score=169.87  Aligned_cols=110  Identities=36%  Similarity=0.608  Sum_probs=98.4

Q ss_pred             cCCCeEEEEEEccC-CCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEE
Q 013755           44 GNSGIKKKLLKNGV-DWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTF  122 (437)
Q Consensus        44 ~~~g~~~~~~~~G~-g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~  122 (437)
                      +.++++..++..-+ =..+.+.||.|.+||++.+.||++|+||+.+++|+.|.+|.+++|+||+.+|.+|.+||++++  
T Consensus        66 ~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl--  143 (188)
T KOG0549|consen   66 PDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKL--  143 (188)
T ss_pred             CCCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEE--
Confidence            34556666665422 137789999999999999999999999999999999999999999999999999999999999  


Q ss_pred             ecCCCCCCCCCCCC-CCCCCCcEEEEEEEeceee
Q 013755          123 TLPSELRFGVEGRD-SLPPNSVVQFEVELVSWIT  155 (437)
Q Consensus       123 ~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~~  155 (437)
                      .|||+++||+++.+ .||+++.|+|+|+|.++..
T Consensus       144 ~IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~~  177 (188)
T KOG0549|consen  144 IIPPHLGYGERGAPPKIPGDAVLIFDIELVKIER  177 (188)
T ss_pred             ecCccccCccCCCCCCCCCCeeEEEEEEEEEeec
Confidence            99999999999977 7999999999999999864

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=4.1e-22  Score=187.74  Aligned_cols=271  Identities=22%  Similarity=0.248  Sum_probs=191.1

Q ss_pred             ecCCCeEEEEEEccCC-CCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCC-ccccccHHHHhccccCCceEEE
Q 013755           43 LGNSGIKKKLLKNGVD-WDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGT-GQVATGLDNGIITMKKRECAVF  120 (437)
Q Consensus        43 ~~~~g~~~~~~~~G~g-~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~-~~~~~g~~~~l~~m~~G~~~~~  120 (437)
                      +.+++|.++|+++|.| ...|.+|.+|.|||.+++.++ +|+++.   -.|.|.+|. ..+|.||+.+|..|++|+.+.|
T Consensus        81 l~Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~---~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v  156 (397)
T KOG0543|consen   81 LLDGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRE---LRFEFGEGEDIDVIEGLEIALRMMKVGEVALV  156 (397)
T ss_pred             ccCCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccc---cceEEecCCccchhHHHHHHHHhcCccceEEE
Confidence            3499999999999999 788999999999999999777 777653   337888887 5799999999999999999999


Q ss_pred             EEecCCCCCCCCCC-CC-CCCCCCcEEEEEEEeceeeeeccCCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCee
Q 013755          121 TFTLPSELRFGVEG-RD-SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTM  198 (437)
Q Consensus       121 ~~~ip~~~ayg~~~-~~-~i~~~~~~~f~v~l~~~~~~~d~~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~  198 (437)
                        +|+|.|+||+.+ ++ .|||++++.|+|+|+++....+.+..-... .++...                       +.
T Consensus       157 --~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~-e~l~~A-----------------------~~  210 (397)
T KOG0543|consen  157 --TIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAE-ERLEAA-----------------------DR  210 (397)
T ss_pred             --EeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchH-HHHHHH-----------------------HH
Confidence              999999999444 44 999999999999999985222211100000 000000                       00


Q ss_pred             eeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEEcCCC-CcchHHHHHhcccccCcEEEEEEcCCCCCCccc
Q 013755          199 VAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEE-QVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE  277 (437)
Q Consensus       199 v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~-~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~  277 (437)
                      +.                    ..|+.            -|.-|.- ....-.+.|+.-|          ..+..     
T Consensus       211 ~k--------------------e~Gn~------------~fK~gk~~~A~~~Yerav~~l----------~~~~~-----  243 (397)
T KOG0543|consen  211 KK--------------------ERGNV------------LFKEGKFKLAKKRYERAVSFL----------EYRRS-----  243 (397)
T ss_pred             HH--------------------HhhhH------------HHhhchHHHHHHHHHHHHHHh----------hcccc-----
Confidence            00                    01111            0111110 1122223333222          11110     


Q ss_pred             cccccccCCCCceEEEEEEEeeeecccCCCCCChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChH
Q 013755          278 AKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDD  357 (437)
Q Consensus       278 ~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~  357 (437)
                             .++                    +-.....--....+.+.+..+.+.++|..|+..+.++|.+.|.+.     
T Consensus       244 -------~~~--------------------ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~-----  291 (397)
T KOG0543|consen  244 -------FDE--------------------EEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV-----  291 (397)
T ss_pred             -------CCH--------------------HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch-----
Confidence                   000                    000011123345677899999999999999999999999988764     


Q ss_pred             HHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH-HHHHHHHHHhCC
Q 013755          358 EQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILA-ELDIKKAIEADP  432 (437)
Q Consensus       358 ~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A-~~~~~~al~l~P  432 (437)
                                .+++.+|.+++.+++|+.|+.+|++|++++|.|-.+...+..|..+..++.+. .+.|.+.+..-+
T Consensus       292 ----------KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  292 ----------KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             ----------hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence                      77999999999999999999999999999999988888888888888777665 678888876544

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.88  E-value=2.6e-22  Score=174.38  Aligned_cols=111  Identities=31%  Similarity=0.447  Sum_probs=102.9

Q ss_pred             ceeecCCCeEEEEEEc--cCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCce
Q 013755           40 ERGLGNSGIKKKLLKN--GVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKREC  117 (437)
Q Consensus        40 ~~~~~~~g~~~~~~~~--G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~  117 (437)
                      ....+++|++|++++.  |+| .+|+.||.|++||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++||+
T Consensus        63 ~~~~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~  140 (177)
T TIGR03516        63 KYETSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGET  140 (177)
T ss_pred             CceECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCE
Confidence            3467999999999976  666 78999999999999999999999999875 6999999999999999999999999999


Q ss_pred             EEEEEecCCCCCCCCCCCC-CCCCCCcEEEEEEEecee
Q 013755          118 AVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (437)
Q Consensus       118 ~~~~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~  154 (437)
                      ++|  +|||++|||.++.+ .||+|++++|+|+|+++.
T Consensus       141 ~~~--~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       141 ATF--LFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             EEE--EECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence            999  99999999999876 899999999999999874

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.87  E-value=2e-21  Score=179.22  Aligned_cols=112  Identities=33%  Similarity=0.598  Sum_probs=105.3

Q ss_pred             CceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceE
Q 013755           39 EERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA  118 (437)
Q Consensus        39 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~  118 (437)
                      ..+.++++|++|+|+++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.++  +++|||+++|.+|++|+++
T Consensus       139 ~gv~~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~  215 (269)
T PRK10902        139 KGVKTTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKI  215 (269)
T ss_pred             CCcEECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEE
Confidence            34567999999999999999 89999999999999999999999999998899999986  7999999999999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCCCCCCcEEEEEEEeceee
Q 013755          119 VFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWIT  155 (437)
Q Consensus       119 ~~~~~ip~~~ayg~~~~~~i~~~~~~~f~v~l~~~~~  155 (437)
                      +|  +||++++||..+.+.||++++++|+|+|.++..
T Consensus       216 ~l--~IP~~laYG~~g~~gIppns~LvfeVeLl~V~~  250 (269)
T PRK10902        216 KL--VIPPELAYGKAGVPGIPANSTLVFDVELLDVKP  250 (269)
T ss_pred             EE--EECchhhCCCCCCCCCCCCCcEEEEEEEEEecc
Confidence            99  999999999998889999999999999998853

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=7e-21  Score=163.42  Aligned_cols=106  Identities=36%  Similarity=0.528  Sum_probs=94.9

Q ss_pred             CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (437)
Q Consensus       161 ~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~  240 (437)
                      -.+++..++++.|.|. .|..++.|++                           ||+|+|.||++||+| ++++.|+.|.
T Consensus        99 ~~sgl~y~~~~~G~G~-~~~~~~~V~v---------------------------hY~G~l~~G~vFDsS-~~rg~p~~f~  149 (205)
T COG0545          99 LPSGLQYKVLKAGDGA-APKKGDTVTV---------------------------HYTGTLIDGTVFDSS-YDRGQPAEFP  149 (205)
T ss_pred             CCCCcEEEEEeccCCC-CCCCCCEEEE---------------------------EEEEecCCCCccccc-cccCCCceee
Confidence            4577889999999884 5666666665                           778888999999999 9999999999


Q ss_pred             cCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeee
Q 013755          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF  300 (437)
Q Consensus       241 lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~  300 (437)
                      ||  .+|+||+++|..|++|++..++|||+++||..+.+.   .||||++|+|+|+|+++
T Consensus       150 l~--~vI~Gw~egl~~M~vG~k~~l~IP~~laYG~~g~~g---~Ippns~LvFeVeLl~v  204 (205)
T COG0545         150 LG--GVIPGWDEGLQGMKVGGKRKLTIPPELAYGERGVPG---VIPPNSTLVFEVELLDV  204 (205)
T ss_pred             cC--CeeehHHHHHhhCCCCceEEEEeCchhccCcCCCCC---CCCCCCeEEEEEEEEec
Confidence            97  999999999999999999999999999999999775   59999999999999986

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.79  E-value=5.1e-19  Score=139.18  Aligned_cols=92  Identities=47%  Similarity=0.805  Sum_probs=86.5

Q ss_pred             CCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCC-
Q 013755           58 DWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD-  136 (437)
Q Consensus        58 g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~-  136 (437)
                      |.++|+.||.|+|||++++.+|++|++++..+.|+.|.+|.+++++||+++|.+|++|++++|  .||++++||..+.. 
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~--~vp~~~ayg~~~~~~   78 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREF--YVPPELAYGEKGLEP   78 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEE--EEEGGGTTTTTTBCT
T ss_pred             CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeee--EeCChhhcCccccCC
Confidence            446799999999999999999999999988879999999999999999999999999999999  99999999999874 


Q ss_pred             -CCCCCCcEEEEEEEe
Q 013755          137 -SLPPNSVVQFEVELV  151 (437)
Q Consensus       137 -~i~~~~~~~f~v~l~  151 (437)
                       .||++++++|+|+|+
T Consensus        79 ~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   79 PKIPPNSTLVFEIELL   94 (94)
T ss_dssp             TTBTTTSEEEEEEEEE
T ss_pred             CCcCCCCeEEEEEEEC
Confidence             699999999999985

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.79  E-value=5.5e-19  Score=160.39  Aligned_cols=108  Identities=34%  Similarity=0.431  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK  392 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~  392 (437)
                      +....++.++.+||.+++.++|++|+..|.+||.+.|.+.               ..|+|+|.+|.++|+|+.|+++|+.
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA---------------VyycNRAAAy~~Lg~~~~AVkDce~  140 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA---------------VYYCNRAAAYSKLGEYEDAVKDCES  140 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc---------------hHHHHHHHHHHHhcchHHHHHHHHH
Confidence            6788999999999999999999999999999999999876               5699999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          393 VLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       393 al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ||.+||.+.++|.|+|.+|..+|+|++|++.|++||+++|+|+
T Consensus       141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence            9999999999999999999999999999999999999999986

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.78  E-value=4.3e-19  Score=151.34  Aligned_cols=131  Identities=25%  Similarity=0.337  Sum_probs=96.0

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCCC
Q 013755           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (437)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~~  140 (437)
                      .++.||.|+|||++++.||++|+||+..+.|+.|.+|.+++++||+++|.+|++|++++|  .|||++|||.++...+..
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v--~ipp~~ayG~~d~~~v~~   81 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTF--SLEPEAAFGVPSPDLIQY   81 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEE--EEChHHhcCCCChHHEEE
Confidence            678999999999999999999999998779999999999999999999999999999999  999999999987652111


Q ss_pred             CCcEEEEE-EEeceeeeecc-CCCccc-eEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeec
Q 013755          141 NSVVQFEV-ELVSWITVVDL-SKDGGI-VKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (437)
Q Consensus       141 ~~~~~f~v-~l~~~~~~~d~-~~dg~v-~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~  201 (437)
                      .+.-.|.- ....+.....+ ..+|.. .-+|+.-        +++.|++|+||+++|.++.|+
T Consensus        82 vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~i--------~~~~v~vD~NHPLAGk~L~f~  137 (156)
T PRK15095         82 FSRRDFMDAGEPEIGAIMLFTAMDGSEMPGVIREI--------NGDSITVDFNHPLAGQTVHFD  137 (156)
T ss_pred             ecHHHCCcccCCCCCCEEEEECCCCCEEEEEEEEE--------cCCEEEEECCCcCCCCEEEEE
Confidence            11111100 00111111111 123433 2234333        457999999999999998774

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=7.7e-19  Score=148.39  Aligned_cols=131  Identities=28%  Similarity=0.375  Sum_probs=97.5

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCCC
Q 013755           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (437)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~~  140 (437)
                      .+++||.|+++|++++.||++|++|...+.|+.|.+|.+++++||+++|.+|.+|++.++  .|||+.|||++++..|..
T Consensus         2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V--~IpPE~AfGe~~~~lvq~   79 (174)
T COG1047           2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTV--EIPPEDAFGEYDPDLVQR   79 (174)
T ss_pred             cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEE--EeCchHhcCCCChHHeEE
Confidence            578999999999999999999999988668999999999999999999999999999999  999999999998763222


Q ss_pred             CCcEEEEEE-Eeceeeeecc-CCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeec
Q 013755          141 NSVVQFEVE-LVSWITVVDL-SKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (437)
Q Consensus       141 ~~~~~f~v~-l~~~~~~~d~-~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~  201 (437)
                      -+.-.|.-. -..+.+.... .+++.+.-+|+.-        .++.|++||||++++.++.|+
T Consensus        80 vp~~~F~~~~~~~vGm~~~~~~~~~~~~~~V~~V--------~~~~V~VDfNHpLAGktL~fe  134 (174)
T COG1047          80 VPRDEFQGVGELEVGMEVEAEGGDGEIPGVVTEV--------SGDRVTVDFNHPLAGKTLHFE  134 (174)
T ss_pred             ecHHHhCcCCCCCCCcEEEEcCCCceeeEEEEEE--------cCCEEEEeCCCcCCCCeEEEE
Confidence            111112110 0111111111 1232233333322        357999999999999998885

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.75  E-value=9.5e-18  Score=143.09  Aligned_cols=114  Identities=40%  Similarity=0.550  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK  392 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~  392 (437)
                      ..+..+..++..||.+|+.|+|.+|...|..||.+.|..+          .+++..+|.|+|.|+++++.|+.|+..|.+
T Consensus        90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~dcsK  159 (271)
T KOG4234|consen   90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIEDCSK  159 (271)
T ss_pred             HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHHHHHh
Confidence            3478899999999999999999999999999999998765          366788999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          393 VLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       393 al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ||+++|.+.+|+.|||.+|.++..|++|+.+|++.++++|.+.+
T Consensus       160 aiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e  203 (271)
T KOG4234|consen  160 AIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE  203 (271)
T ss_pred             hHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence            99999999999999999999999999999999999999998753

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.73  E-value=4.6e-18  Score=148.56  Aligned_cols=130  Identities=16%  Similarity=0.155  Sum_probs=95.8

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCCC
Q 013755           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (437)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~~  140 (437)
                      +++++++|+|+|++++.+|++|++|+.. .|+.|.+|.++++|+|+++|.+|++|++++|  .|||+.|||+++...+..
T Consensus         2 kI~~~~vV~l~Y~l~~~dG~v~dst~~~-~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v--~l~peeAyGe~d~~lV~~   78 (196)
T PRK10737          2 KVAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDV--AVGANDAYGQYDENLVQR   78 (196)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEecCCC-CCeEEEeCCCcchHHHHHHHcCCCCCCEEEE--EEChHHhcCCCChHHEEE
Confidence            4789999999999999999999999864 8999999999999999999999999999999  999999999998762211


Q ss_pred             CCcEEEE-EEEeceeeeecc-CCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeec
Q 013755          141 NSVVQFE-VELVSWITVVDL-SKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (437)
Q Consensus       141 ~~~~~f~-v~l~~~~~~~d~-~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~  201 (437)
                      .+.-.|. ++-+.+.+.... ..++.+..+|+.-        +.+.|+||+||+|++.++.|+
T Consensus        79 vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev--------~~d~V~vD~NHPLAG~~L~F~  133 (196)
T PRK10737         79 VPKDVFMGVDELQVGMRFLAETDQGPVPVEITAV--------EDDHVVVDGNHMLAGQNLKFN  133 (196)
T ss_pred             ecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEE--------cCCEEEEECCCcCCCCEEEEE
Confidence            1111120 000111111111 2334333334333        457999999999999998875

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.70  E-value=1.6e-16  Score=141.64  Aligned_cols=106  Identities=32%  Similarity=0.522  Sum_probs=92.7

Q ss_pred             CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (437)
Q Consensus       161 ~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~  240 (437)
                      .+.++..+|+++|.|. .|..++.|.++                           |++++.||++||++ |.++.|+.|.
T Consensus       100 t~sGl~y~vi~~G~G~-~p~~~d~V~v~---------------------------Y~g~l~dG~vfdss-~~~g~P~~f~  150 (206)
T PRK11570        100 TESGLQFRVLTQGEGA-IPARTDRVRVH---------------------------YTGKLIDGTVFDSS-VARGEPAEFP  150 (206)
T ss_pred             CCCCcEEEEEeCCCCC-CCCCCCEEEEE---------------------------EEEEECCCCEEEec-cCCCCCeEEE
Confidence            4567899999999995 67888888775                           55556678888888 8889999999


Q ss_pred             cCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeee
Q 013755          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF  300 (437)
Q Consensus       241 lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~  300 (437)
                      +|  .+++||+++|.+|++|+++.|+||++++||+.+...   .|||+++|+|+|+|+++
T Consensus       151 l~--~vipG~~eaL~~M~~G~k~~~~IP~~lAYG~~g~~~---~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        151 VN--GVIPGWIEALTLMPVGSKWELTIPHELAYGERGAGA---SIPPFSTLVFEVELLEI  205 (206)
T ss_pred             ee--chhhHHHHHHcCCCCCCEEEEEECHHHcCCCCCCCC---CcCCCCeEEEEEEEEEE
Confidence            95  689999999999999999999999999999998764   69999999999999987

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.66  E-value=1.1e-15  Score=132.99  Aligned_cols=109  Identities=19%  Similarity=0.263  Sum_probs=87.0

Q ss_pred             CCccceEEEEeccccC-CCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEE
Q 013755          161 KDGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEF  239 (437)
Q Consensus       161 ~dg~v~k~i~~~G~g~-~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f  239 (437)
                      ...++...++..+.|. ..|..++.|.++|..                           ++.||++|+++ +. ..|..|
T Consensus        67 t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~---------------------------~~~dG~v~~ss-~~-~~P~~f  117 (177)
T TIGR03516        67 SQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDI---------------------------RALDGDVIYSE-EE-LGPQTY  117 (177)
T ss_pred             CCCccEEEEEEecCCCCCcCCCCCEEEEEEEE---------------------------EeCCCCEEEeC-CC-CCCEEE
Confidence            3445566666553332 467788887775544                           45566666666 44 459999


Q ss_pred             EcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755          240 ITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (437)
Q Consensus       240 ~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~  301 (437)
                      .+|.+.+++||+++|.+|++||++.|.+|+++|||..+...   .|||+++|+|+|+|+++.
T Consensus       118 ~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~iP~~~AYG~~g~~~---~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       118 KVDQQDLFSGLRDGLKLMKEGETATFLFPSHKAYGYYGDQN---KIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             EeCCcchhHHHHHHHcCCCCCCEEEEEECHHHcCCCCCCCC---CcCcCCcEEEEEEEEEec
Confidence            99999999999999999999999999999999999988764   699999999999999985

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=2e-15  Score=133.31  Aligned_cols=105  Identities=30%  Similarity=0.478  Sum_probs=86.6

Q ss_pred             CccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEec-CccEEeecCCCCCCCeE-E
Q 013755          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE-DGTVFEKKGYDGEQPLE-F  239 (437)
Q Consensus       162 dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~-~g~~fd~~~~~~~~p~~-f  239 (437)
                      .+++...=++.|.| ..|..++.|.+                           +|.|++. +|.+||++  ..+.|+. |
T Consensus       119 ~~Gl~y~D~~vG~G-~~a~~G~rV~v---------------------------~Y~Gkl~~~GkvFd~~--~~~kp~~~f  168 (226)
T KOG0552|consen  119 PGGLRYEDLRVGSG-PSAKKGKRVSV---------------------------RYIGKLKGNGKVFDSN--FGGKPFKLF  168 (226)
T ss_pred             CCCcEEEEEEecCC-CCCCCCCEEEE---------------------------EEEEEecCCCeEeecc--cCCCCcccc
Confidence            34555555666766 35555666665                           5566665 78889987  5677888 9


Q ss_pred             EcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeee
Q 013755          240 ITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF  300 (437)
Q Consensus       240 ~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~  300 (437)
                      .+|.+.||+||+.++.+|++|.+.+|+|||.++||..+..    .||||++|+|+|+|+.+
T Consensus       169 ~lg~g~VIkG~d~gv~GMkvGGkRrviIPp~lgYg~~g~~----~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  169 RLGSGEVIKGWDVGVEGMKVGGKRRVIIPPELGYGKKGVP----EIPPNSTLVFDVELLSV  225 (226)
T ss_pred             ccCCCCCCchHHHhhhhhccCCeeEEEeCccccccccCcC----cCCCCCcEEEEEEEEec
Confidence            9999999999999999999999999999999999998887    59999999999999876

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.63  E-value=4.6e-15  Score=116.58  Aligned_cols=93  Identities=31%  Similarity=0.526  Sum_probs=78.3

Q ss_pred             CCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEEcCCCCcchHHHHHhc
Q 013755          176 DASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAA  255 (437)
Q Consensus       176 ~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~  255 (437)
                      ...|+.+|.|.++|..++                           .+|++|+++ +..+.|++|.+|.+.+++||+.+|.
T Consensus         2 ~~~~~~gd~V~i~y~~~~---------------------------~~g~~~~~~-~~~~~~~~~~~g~~~~i~g~e~al~   53 (94)
T PF00254_consen    2 PRTPKEGDTVTIHYTGRL---------------------------EDGKVFDSS-YQEGEPFEFRLGSGQVIPGLEEALI   53 (94)
T ss_dssp             SSSBSTTSEEEEEEEEEE---------------------------TTSEEEEET-TTTTSEEEEETTSSSSSHHHHHHHT
T ss_pred             CccCCCCCEEEEEEEEEE---------------------------CCCcEEEEe-eecCcceeeeeccCccccchhhhcc
Confidence            345777788877665544                           455666666 6788999999999999999999999


Q ss_pred             ccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEe
Q 013755          256 TMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMM  298 (437)
Q Consensus       256 ~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~  298 (437)
                      +|+.||++.|.+|++++||+.+...  ..||++++|+|+|+|+
T Consensus        54 ~m~~Ge~~~~~vp~~~ayg~~~~~~--~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   54 GMKVGEKREFYVPPELAYGEKGLEP--PKIPPNSTLVFEIELL   94 (94)
T ss_dssp             TSBTTEEEEEEEEGGGTTTTTTBCT--TTBTTTSEEEEEEEEE
T ss_pred             cccCCCEeeeEeCChhhcCccccCC--CCcCCCCeEEEEEEEC
Confidence            9999999999999999999988743  2599999999999985

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.60  E-value=1.3e-14  Score=134.19  Aligned_cols=108  Identities=30%  Similarity=0.516  Sum_probs=93.3

Q ss_pred             CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (437)
Q Consensus       161 ~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~  240 (437)
                      .+.++.++|+++|.|. .|..+|.|.++|                           .+++.||++|+++ +.++.|+.|.
T Consensus       144 t~sGl~y~Vi~~G~G~-~p~~gD~V~V~Y---------------------------~g~l~dG~vfdss-~~~g~p~~f~  194 (269)
T PRK10902        144 TSTGLLYKVEKEGTGE-APKDSDTVVVNY---------------------------KGTLIDGKEFDNS-YTRGEPLSFR  194 (269)
T ss_pred             CCCccEEEEEeCCCCC-CCCCCCEEEEEE---------------------------EEEeCCCCEeecc-ccCCCceEEe
Confidence            4567899999999995 688888888755                           5555677888887 7888999999


Q ss_pred             cCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeecc
Q 013755          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKE  303 (437)
Q Consensus       241 lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~  303 (437)
                      ++  .+++||+.+|.+|++|+++.|+||++++||..+..    .||++++|+|+|+|+++...
T Consensus       195 l~--~vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~~----gIppns~LvfeVeLl~V~~~  251 (269)
T PRK10902        195 LD--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVP----GIPANSTLVFDVELLDVKPA  251 (269)
T ss_pred             cC--CcchHHHHHHhcCCCCcEEEEEECchhhCCCCCCC----CCCCCCcEEEEEEEEEeccC
Confidence            95  69999999999999999999999999999998764    49999999999999999753

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=3.5e-15  Score=144.73  Aligned_cols=106  Identities=34%  Similarity=0.481  Sum_probs=100.5

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      +.+...+..|+.+|+.|+|..|+.+|.+|+...|++.               .+|.|+|.||.+++++..|+.+|+++++
T Consensus       356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da---------------~lYsNRAac~~kL~~~~~aL~Da~~~ie  420 (539)
T KOG0548|consen  356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA---------------RLYSNRAACYLKLGEYPEALKDAKKCIE  420 (539)
T ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3467778899999999999999999999999998875               7799999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ++|++.++|+|.|.|+..+.+|++|++.|.+++++||++.+
T Consensus       421 L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e  461 (539)
T KOG0548|consen  421 LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE  461 (539)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence            99999999999999999999999999999999999999865

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=7.6e-15  Score=140.57  Aligned_cols=102  Identities=34%  Similarity=0.516  Sum_probs=96.8

Q ss_pred             CChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHH
Q 013755          309 MNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIE  388 (437)
Q Consensus       309 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~  388 (437)
                      +..+++.+.+..++.+||.+|+.|+|++||.+|.+||.+.|+.+-+               |.|+|.||..+|+|++.++
T Consensus       106 ~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF---------------YsNraAcY~~lgd~~~Vie  170 (606)
T KOG0547|consen  106 MLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF---------------YSNRAACYESLGDWEKVIE  170 (606)
T ss_pred             cChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh---------------hhhHHHHHHHHhhHHHHHH
Confidence            5678889999999999999999999999999999999999987644               9999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 013755          389 LCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIK  425 (437)
Q Consensus       389 ~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~  425 (437)
                      +|.+||+++|++++||+||+.++..+|++++|+.+..
T Consensus       171 d~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~t  207 (606)
T KOG0547|consen  171 DCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVT  207 (606)
T ss_pred             HHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhh
Confidence            9999999999999999999999999999999998875

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.57  E-value=5.2e-15  Score=135.97  Aligned_cols=111  Identities=32%  Similarity=0.390  Sum_probs=104.3

Q ss_pred             hHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHH
Q 013755          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC  390 (437)
Q Consensus       311 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~  390 (437)
                      .++.+.....++++||.||++|+|++||.+|.+++...|.++               ..+.|+|.+|++++.|..|..+|
T Consensus        90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np---------------V~~~NRA~AYlk~K~FA~AE~DC  154 (536)
T KOG4648|consen   90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP---------------VYHINRALAYLKQKSFAQAEEDC  154 (536)
T ss_pred             HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCc---------------cchhhHHHHHHHHHHHHHHHHhH
Confidence            456678888899999999999999999999999999999876               45899999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          391 SKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       391 ~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +.|+.+|..+.+||.||+.+...+|+..+|.++++.+|+|+|++.+
T Consensus       155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E  200 (536)
T KOG4648|consen  155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIE  200 (536)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence            9999999999999999999999999999999999999999998753

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.53  E-value=1e-13  Score=117.76  Aligned_cols=102  Identities=18%  Similarity=0.214  Sum_probs=96.3

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      .+...|..++..|+|++|+..|++++...|.+.               .+++++|.++.++|++++|+..|+++++++|+
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSW---------------RAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            356789999999999999999999999988754               77999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ++.+++++|.++..+|++++|+..|+++++++|++++
T Consensus        91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~  127 (144)
T PRK15359         91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS  127 (144)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            9999999999999999999999999999999999864

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.50  E-value=1.2e-13  Score=135.19  Aligned_cols=103  Identities=18%  Similarity=0.298  Sum_probs=97.4

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ..++.+|+.+|..++|++|+.+|.+||.+.|.+.               .+|+++|.||+++|++++|+.++++++.++|
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~---------------~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P   67 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA---------------ELYADRAQANIKLGNFTEAVADANKAIELDP   67 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            4578899999999999999999999999988753               6799999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +++.+|+++|.+|+.+|+|++|+..|+++++++|+++.
T Consensus        68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~  105 (356)
T PLN03088         68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSR  105 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999999999999999999864

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.50  E-value=2.2e-13  Score=143.56  Aligned_cols=133  Identities=28%  Similarity=0.358  Sum_probs=115.3

Q ss_pred             CCCCceEEEEEEEeeeecccCCCCCChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHh
Q 013755          285 IPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKS  364 (437)
Q Consensus       285 ip~~~~l~~~vel~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~  364 (437)
                      +|+...+....++..+. ....|.++.+++...+..+++.|+.+|+.|+|++|+..|++++.+.|+ +            
T Consensus        95 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~------------  160 (615)
T TIGR00990        95 APKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P------------  160 (615)
T ss_pred             CCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h------------
Confidence            45555555555554433 355799999999999999999999999999999999999999999874 2            


Q ss_pred             hhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          365 LRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       365 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                         ..|+|+|.||+++|+|++|+.+|+++|+++|++.++|+++|.+|..+|+|++|+.+|.+++.+++.+
T Consensus       161 ---~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~  227 (615)
T TIGR00990       161 ---VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFR  227 (615)
T ss_pred             ---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence               4589999999999999999999999999999999999999999999999999999998887776543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.46  E-value=1.1e-12  Score=110.03  Aligned_cols=105  Identities=12%  Similarity=0.174  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      .+..+.++..|..++..|++++|...|+-...++|.+.               ..|+|||.|+..+|+|.+|+..|.+|+
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~---------------~y~~gLG~~~Q~~g~~~~AI~aY~~A~   96 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF---------------DYWFRLGECCQAQKHWGEAIYAYGRAA   96 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            35577889999999999999999999999999988764               669999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      .++|+++.++++.|.|++.+|+.+.|++.|+.|+...-.+
T Consensus        97 ~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363         97 QIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999887433

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=2.7e-13  Score=127.77  Aligned_cols=110  Identities=28%  Similarity=0.346  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK  392 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~  392 (437)
                      -..+.....++.||.+|+.|+|..|.++|..||.++|.+...           .+.+|.|+|.++.++|+..+|+..|+.
T Consensus       244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~-----------naklY~nra~v~~rLgrl~eaisdc~~  312 (486)
T KOG0550|consen  244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT-----------NAKLYGNRALVNIRLGRLREAISDCNE  312 (486)
T ss_pred             hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch-----------hHHHHHHhHhhhcccCCchhhhhhhhh
Confidence            456788899999999999999999999999999999986533           578999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          393 VLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       393 al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      |+.+||...++|.++|.||+.+++|++|+++|++|++++.+
T Consensus       313 Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  313 ALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999998765

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=7.3e-13  Score=121.65  Aligned_cols=108  Identities=29%  Similarity=0.370  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      -+.+..+++.||.||+.++|..|+..|.++|+..-.++.           +.+.+|.|+|.|++.+|+|..|+.+|.+|+
T Consensus        78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-----------lnavLY~NRAAa~~~l~NyRs~l~Dcs~al  146 (390)
T KOG0551|consen   78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-----------LNAVLYTNRAAAQLYLGNYRSALNDCSAAL  146 (390)
T ss_pred             HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            347999999999999999999999999999998766653           468999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      .++|.+.++++|-|.|++.|.++.+|..+++..++++-.
T Consensus       147 ~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  147 KLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             hcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            999999999999999999999999999999988877644

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=4.9e-13  Score=129.99  Aligned_cols=103  Identities=25%  Similarity=0.329  Sum_probs=98.3

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..++..||.+|..|+|+.|+.+|..|+.+.|.+.               .+|.|++.||.++++|++|+++..+..+++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nh---------------vlySnrsaa~a~~~~~~~al~da~k~~~l~   66 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNH---------------VLYSNRSAAYASLGSYEKALKDATKTRRLN   66 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCcc---------------chhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            45678999999999999999999999999998854               569999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |+++++|+|+|.+++.+|+|++|+..|.+.|+.+|+|+
T Consensus        67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~  104 (539)
T KOG0548|consen   67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNK  104 (539)
T ss_pred             CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchH
Confidence            99999999999999999999999999999999999986

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.39  E-value=6e-12  Score=105.67  Aligned_cols=105  Identities=23%  Similarity=0.345  Sum_probs=98.1

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      ....+...|..++..|++++|+..|++++...|.+.               .++.++|.++.+++++++|+..+++++..
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS---------------RYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            356688999999999999999999999999887653               67899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +|.++..++.+|.+|..+|++++|+..|+++++++|++..
T Consensus        81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            9999999999999999999999999999999999999864

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.35  E-value=1e-11  Score=118.69  Aligned_cols=105  Identities=20%  Similarity=0.147  Sum_probs=99.2

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..+..+|..+...|++++|+..|++++++.|+..               .+|+++|.++..+|++++|+..|+++++
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~Al~  126 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA---------------DAYNYLGIYLTQAGNFDAAYEAFDSVLE  126 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4467799999999999999999999999999988753               7799999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++|++..+++++|.++...|++++|+++|+++++++|+++
T Consensus       127 l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        127 LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999999999999999875

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.33  E-value=4.6e-12  Score=93.26  Aligned_cols=66  Identities=33%  Similarity=0.527  Sum_probs=63.9

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIA-DLILAELDIKKAIEADP  432 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg-~~~~A~~~~~~al~l~P  432 (437)
                      +.+|.++|.+++.+++|++|+.+|+++++++|+++.+++++|.+|..+| ++++|+++|++|++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4678999999999999999999999999999999999999999999999 79999999999999998

...

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=1.2e-11  Score=108.96  Aligned_cols=101  Identities=30%  Similarity=0.308  Sum_probs=94.9

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+.++++.||.+|...+|..|+.+|.+||.+.|...               ..|.|+|.||+++++|+.+..+|.+|++
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~---------------~Y~tnralchlk~~~~~~v~~dcrralq   72 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVA---------------SYYTNRALCHLKLKHWEPVEEDCRRALQ   72 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcc---------------hhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence            4578899999999999999999999999999998764               5589999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      ++|+.++++|.+|.+++....|++|+..+.+|+.+-
T Consensus        73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999997664

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.27  E-value=7.1e-11  Score=105.82  Aligned_cols=106  Identities=19%  Similarity=0.156  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHH-HhccC--HHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACC-LKLKD--YQGAIELCSK  392 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~~~~~--~~~Ai~~~~~  392 (437)
                      ..+..+...|..+...|++++|+..|++|+++.|++.               .+++++|.++ ...|+  +.+|+..+++
T Consensus        71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~---------------~~~~~lA~aL~~~~g~~~~~~A~~~l~~  135 (198)
T PRK10370         71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA---------------ELYAALATVLYYQAGQHMTPQTREMIDK  135 (198)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            3456788899999999999999999999999998764               6789999985 67787  5999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          393 VLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       393 al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +++++|+++.+++.+|.+++.+|+|++|+..++++++++|.+.+
T Consensus       136 al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        136 ALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            99999999999999999999999999999999999999997653

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.25  E-value=2.6e-11  Score=103.59  Aligned_cols=63  Identities=21%  Similarity=0.362  Sum_probs=56.7

Q ss_pred             EEEEEEecCccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccc
Q 013755          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE  277 (437)
Q Consensus       214 v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~  277 (437)
                      +||++++.||++||++ +..+.|+.|.+|.+++++||+.+|.+|++|+++.|.|||+.+||...
T Consensus        13 v~Y~~~~~dG~v~dst-~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d   75 (156)
T PRK15095         13 VHFTLKLDDGSTAEST-RNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS   75 (156)
T ss_pred             EEEEEEeCCCCEEEEC-CCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            4677777788889888 77789999999999999999999999999999999999999999754

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.25  E-value=1.6e-10  Score=94.24  Aligned_cols=107  Identities=14%  Similarity=0.122  Sum_probs=96.0

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ++.++..|..+++.|+|++|+..|.+++...|....            ...+++++|.++++.+++++|+..|++++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~   69 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY------------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKY   69 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC
Confidence            356789999999999999999999999998775432            23568899999999999999999999999999


Q ss_pred             CCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          398 CHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       398 p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      |++   +.+++.+|.++..++++++|+..|+++++..|++..
T Consensus        70 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        70 PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence            886   678999999999999999999999999999998863

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.23  E-value=1.2e-11  Score=121.83  Aligned_cols=104  Identities=17%  Similarity=0.077  Sum_probs=59.8

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      -+.++.+.||.|-..+.|++|+.+|.+|+.+.|+..               .++.|+|.+|+.+|..+-||.+|+++|++
T Consensus       251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A---------------~a~gNla~iYyeqG~ldlAI~~Ykral~~  315 (966)
T KOG4626|consen  251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA---------------VAHGNLACIYYEQGLLDLAIDTYKRALEL  315 (966)
T ss_pred             chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch---------------hhccceEEEEeccccHHHHHHHHHHHHhc
Confidence            356778888888888888888888888888777643               33444444444444444444444444444


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +|+.+.||.++|.++..+|+..+|.++|++||.+.|+++
T Consensus       316 ~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha  354 (966)
T KOG4626|consen  316 QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA  354 (966)
T ss_pred             CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH
Confidence            444444444444444444444444444444444444443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.21  E-value=2.3e-10  Score=100.40  Aligned_cols=110  Identities=21%  Similarity=0.178  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK  392 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~  392 (437)
                      .....+..+...|..++..|+|++|+.+|++++...+....            ...++.++|.++.++|++++|+..+.+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~   97 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------------RSYILYNMGIIYASNGEHDKALEYYHQ   97 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45567788999999999999999999999999998664321            246789999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHhCCCC
Q 013755          393 VLDCDCHNVKALYRRAQAYMEIAD--------------LILAELDIKKAIEADPQN  434 (437)
Q Consensus       393 al~~~p~~~~a~~~~g~~~~~lg~--------------~~~A~~~~~~al~l~P~n  434 (437)
                      ++..+|++..+++.+|.+|..+++              +++|++.+++++.++|+|
T Consensus        98 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603         98 ALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            999999999999999999999888              688999999999999986

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.19  E-value=4.8e-11  Score=117.63  Aligned_cols=101  Identities=25%  Similarity=0.252  Sum_probs=55.4

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ++.+.+.||.+...|+++.|.++|.+|++..|..               +.+++|||.+|.++|++++|+.+|+.||.++
T Consensus       354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~---------------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~  418 (966)
T KOG4626|consen  354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF---------------AAAHNNLASIYKQQGNLDDAIMCYKEALRIK  418 (966)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh---------------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            3445555555666666666666666666555442               2445555555555555555555555555555


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      |..+++|.++|..|..+|+.+.|+.+|.+|+.++|.
T Consensus       419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt  454 (966)
T KOG4626|consen  419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT  454 (966)
T ss_pred             chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence            555555555555555555555555555555555543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.16  E-value=9e-11  Score=85.20  Aligned_cols=65  Identities=25%  Similarity=0.234  Sum_probs=60.9

Q ss_pred             hhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          371 LNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       371 ~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +.+|..+++.|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999985

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.15  E-value=2.9e-11  Score=116.92  Aligned_cols=105  Identities=27%  Similarity=0.357  Sum_probs=99.3

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      .+..++.+|+.+|+.+.|+.|+..|.+|+++.|++.               ..+.|+|.++++.++|..|+.++.+|+++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca---------------~~~anRa~a~lK~e~~~~Al~Da~kaie~   67 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCA---------------IYFANRALAHLKVESFGGALHDALKAIEL   67 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcce---------------eeechhhhhheeechhhhHHHHHHhhhhc
Confidence            467789999999999999999999999999999875               44889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +|...++|+|+|.+++.++++.+|+.+|++...+.|++++
T Consensus        68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~  107 (476)
T KOG0376|consen   68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPD  107 (476)
T ss_pred             CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHH
Confidence            9999999999999999999999999999999999999875

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.15  E-value=1.3e-10  Score=89.03  Aligned_cols=83  Identities=29%  Similarity=0.358  Sum_probs=73.4

Q ss_pred             CCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013755          331 NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQA  410 (437)
Q Consensus       331 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~  410 (437)
                      .++|+.|+..|++++...|.+.             ....++++|.||+++|+|++|+..+++ +..+|.+...++.+|.|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~-------------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~   67 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNP-------------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC   67 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTH-------------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCCh-------------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence            6899999999999999988531             135688899999999999999999999 99999999999999999


Q ss_pred             HHHhccHHHHHHHHHHH
Q 013755          411 YMEIADLILAELDIKKA  427 (437)
Q Consensus       411 ~~~lg~~~~A~~~~~~a  427 (437)
                      +..+|+|++|+..|++|
T Consensus        68 ~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   68 LLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHTT-HHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHhcC
Confidence            99999999999999886

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.14  E-value=9.3e-10  Score=96.16  Aligned_cols=110  Identities=21%  Similarity=0.092  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK  392 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~  392 (437)
                      .....+..+...|..++..|+|++|+..|++|+.+.+....            ...+++|+|.+|..+|++++|+.+|++
T Consensus        30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~------------~~~~~~~lg~~~~~~g~~~eA~~~~~~   97 (168)
T CHL00033         30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD------------RSYILYNIGLIHTSNGEHTKALEYYFQ   97 (168)
T ss_pred             chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh------------hHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44567888999999999999999999999999998654221            235799999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHH-------HhccHH-------HHHHHHHHHHHhCCCC
Q 013755          393 VLDCDCHNVKALYRRAQAYM-------EIADLI-------LAELDIKKAIEADPQN  434 (437)
Q Consensus       393 al~~~p~~~~a~~~~g~~~~-------~lg~~~-------~A~~~~~~al~l~P~n  434 (437)
                      ++.++|.+..+++++|.++.       .+|+++       +|+..|++++.++|.+
T Consensus        98 Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033         98 ALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            99999999999999999998       777766       6666667788888865

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.14  E-value=5.1e-10  Score=85.96  Aligned_cols=99  Identities=33%  Similarity=0.445  Sum_probs=91.3

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      .+...|..++..|++++|+..++++++..|...               .+++++|.++...+++++|+.++++++...|.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   66 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---------------DAYYNLAAAYYKLGKYEEALEDYEKALELDPD   66 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            467889999999999999999999999876542               56889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      +..+++.+|.++..++++++|...+.+++++.|+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999999998874

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.11  E-value=7e-10  Score=117.08  Aligned_cols=119  Identities=12%  Similarity=0.023  Sum_probs=69.9

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC------------ChHHH-------HHHHhhhHHHhhhHHHHH
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF------------VDDEQ-------KLVKSLRVSCWLNSAACC  377 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~~~~~-------~~~~~~~~~~~~nla~~~  377 (437)
                      .+..+...|..++..|++++|+..|++++.+.|.....            +.++.       .........+++++|.++
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~  409 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH  409 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            44567778888888999999999999999887754310            00000       001111234555555555


Q ss_pred             HhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          378 LKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       378 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +.+|++++|+.+|+++++++|++..+++++|.++..+|++++|+..|++++++.|+++
T Consensus       410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~  467 (615)
T TIGR00990       410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP  467 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence            5555555555555555555555555555555555555555555555555555555543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.09  E-value=1.9e-10  Score=113.07  Aligned_cols=102  Identities=18%  Similarity=0.193  Sum_probs=94.6

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      +....+|..|+-.++|++|+.+|+.||...|++.               .+|+.||..+..-.+..+||..|++||++.|
T Consensus       431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~---------------~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP  495 (579)
T KOG1125|consen  431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY---------------LLWNRLGATLANGNRSEEAISAYNRALQLQP  495 (579)
T ss_pred             hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH---------------HHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence            3444578889999999999999999999999875               6799999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ..+++.|++|.+++.+|.|.+|+.+|-.||.+.+.+.
T Consensus       496 ~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~  532 (579)
T KOG1125|consen  496 GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR  532 (579)
T ss_pred             CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence            9999999999999999999999999999999988743

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.07  E-value=4.7e-10  Score=103.79  Aligned_cols=105  Identities=20%  Similarity=0.275  Sum_probs=99.1

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..++...+.|+.++.+|+|..|+.+|..|++.+|++.               .+++.+|.+|+.+|+-..|+.+++++|+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y---------------~aifrRaT~yLAmGksk~al~Dl~rVle  100 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNY---------------QAIFRRATVYLAMGKSKAALQDLSRVLE  100 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhH---------------HHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence            5578889999999999999999999999999988753               6789999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +.|+..-|...+|.+++++|++++|.++|+++|+.+|++.
T Consensus       101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~  140 (504)
T KOG0624|consen  101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG  140 (504)
T ss_pred             cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc
Confidence            9999999999999999999999999999999999999764

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.06  E-value=4.7e-10  Score=82.42  Aligned_cols=67  Identities=30%  Similarity=0.412  Sum_probs=62.4

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc-CHHHHHHHHHHHHH
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKVLD  395 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~Ai~~~~~al~  395 (437)
                      .+..+...|..++..++|++|+..|+++++++|.+               ..+++++|.||.+++ ++.+|+.+++++++
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---------------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---------------AEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---------------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            36788999999999999999999999999998875               478999999999999 79999999999999


Q ss_pred             hCC
Q 013755          396 CDC  398 (437)
Q Consensus       396 ~~p  398 (437)
                      ++|
T Consensus        67 l~P   69 (69)
T PF13414_consen   67 LDP   69 (69)
T ss_dssp             HST
T ss_pred             cCc
Confidence            998

...

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.03  E-value=1.9e-09  Score=117.40  Aligned_cols=104  Identities=8%  Similarity=-0.020  Sum_probs=92.0

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+...|..+.+.|++++|+..|++++.+.|++.               .+++|+|.++..+|++++|+..|+++++++
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~---------------~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~  673 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS---------------NYQAALGYALWDSGDIAQSREMLERAHKGL  673 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            34566778888888888888888888888877653               678999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      |+++.+++++|.++..+|++++|+..|+++++++|++..
T Consensus       674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~  712 (987)
T PRK09782        674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL  712 (987)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence            999999999999999999999999999999999998753

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.02  E-value=2.6e-09  Score=98.66  Aligned_cols=108  Identities=19%  Similarity=0.135  Sum_probs=97.4

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..++..|..++..|+|++|+..|++++...|.++.            ...+++++|.+|++++++++|+..++++++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~   98 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------------AEQAQLDLAYAYYKSGDYAEAIAAADRFIR   98 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999886542            235689999999999999999999999999


Q ss_pred             hCCCCHH---HHHHHHHHHHHh--------ccHHHHHHHHHHHHHhCCCCC
Q 013755          396 CDCHNVK---ALYRRAQAYMEI--------ADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       396 ~~p~~~~---a~~~~g~~~~~l--------g~~~~A~~~~~~al~l~P~n~  435 (437)
                      .+|+++.   +++.+|.++..+        +++++|+..|++++..+|++.
T Consensus        99 ~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  149 (235)
T TIGR03302        99 LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE  149 (235)
T ss_pred             HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence            9998876   799999999987        899999999999999999875

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=1.5e-09  Score=106.56  Aligned_cols=108  Identities=20%  Similarity=0.164  Sum_probs=86.6

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      .+++.|..+|..+.|.+|...|+.++...+....-.        ..-...++|||.+|.++++|.+||.+++++|.+.|.
T Consensus       416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~--------~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k  487 (611)
T KOG1173|consen  416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK--------IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK  487 (611)
T ss_pred             hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc--------cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            345566666667777777777777764433221100        012356899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++.++-..|.+|..+|+++.|++.|.+||.++|+|.
T Consensus       488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~  523 (611)
T KOG1173|consen  488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI  523 (611)
T ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence            999999999999999999999999999999999983

>PRK15331 chaperone protein SicA; Provisional

Probab=99.01  E-value=3.4e-09  Score=89.54  Aligned_cols=99  Identities=12%  Similarity=0.101  Sum_probs=92.2

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      +..+..+..|..+|..|+|++|...|+-...+++.++               ..++.||.|+..+++|++|+..|..|..
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~---------------~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~   99 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP---------------DYTMGLAAVCQLKKQFQKACDLYAVAFT   99 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567789999999999999999999999888877664               5589999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755          396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIE  429 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~  429 (437)
                      ++++++...|+.|+||+.+|+.+.|+..|..++.
T Consensus       100 l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        100 LLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             cccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999987

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=1.7e-09  Score=104.33  Aligned_cols=106  Identities=23%  Similarity=0.196  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      ...+..+...|..+|-.|++-.|...+.+++.+.|...               .+|..+|.+|...++-.+-.++|++|.
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~---------------~lyI~~a~~y~d~~~~~~~~~~F~~A~  387 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN---------------SLYIKRAAAYADENQSEKMWKDFNKAE  387 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc---------------hHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence            45578888999999999999999999999999988765               458999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .+||.|+..||.||+.++-+++|++|+++|++|+.|+|+|.
T Consensus       388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~  428 (606)
T KOG0547|consen  388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA  428 (606)
T ss_pred             hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh
Confidence            99999999999999999999999999999999999999874

>PRK12370 invasion protein regulator; Provisional

Probab=98.98  E-value=3.7e-09  Score=109.94  Aligned_cols=92  Identities=13%  Similarity=0.003  Sum_probs=84.9

Q ss_pred             hCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013755          330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQ  409 (437)
Q Consensus       330 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~  409 (437)
                      ..+++++|+..+++|+++.|++.               .++..+|.++..+|++++|+..|++|++++|+++.+++.+|.
T Consensus       316 ~~~~~~~A~~~~~~Al~ldP~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  380 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELDHNNP---------------QALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGW  380 (553)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34568999999999999998764               668899999999999999999999999999999999999999


Q ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          410 AYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       410 ~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ++..+|++++|+..|+++++++|.++.
T Consensus       381 ~l~~~G~~~eAi~~~~~Al~l~P~~~~  407 (553)
T PRK12370        381 NLFMAGQLEEALQTINECLKLDPTRAA  407 (553)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCChh
Confidence            999999999999999999999998753

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.98  E-value=5.7e-09  Score=92.02  Aligned_cols=108  Identities=25%  Similarity=0.180  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK  392 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~  392 (437)
                      ..-..+.....+|..|+..|++..|...+++||+.+|+..               .+|.-+|..|.++|+.+.|-+.|++
T Consensus        30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~---------------~a~~~~A~~Yq~~Ge~~~A~e~Yrk   94 (250)
T COG3063          30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY---------------LAHLVRAHYYQKLGENDLADESYRK   94 (250)
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---------------HHHHHHHHHHHHcCChhhHHHHHHH
Confidence            4456678888999999999999999999999999988754               3344455555555555555555555


Q ss_pred             HHHhCCCC------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          393 VLDCDCHN------------------------------------VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       393 al~~~p~~------------------------------------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |+.++|++                                    ...+-|+|.|.++.|+++.|..+|+++|+++|+++
T Consensus        95 Alsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~  173 (250)
T COG3063          95 ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP  173 (250)
T ss_pred             HHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence            55555544                                    45566777777777777777777777777777765

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.98  E-value=2.3e-09  Score=91.10  Aligned_cols=81  Identities=15%  Similarity=0.042  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 013755          338 GKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADL  417 (437)
Q Consensus       338 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~  417 (437)
                      ..+|++++++.|..                  +.++|.++.++|++++|+.+|++++.++|.+..+++.+|.++..+|++
T Consensus        13 ~~~~~~al~~~p~~------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~   74 (144)
T PRK15359         13 EDILKQLLSVDPET------------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY   74 (144)
T ss_pred             HHHHHHHHHcCHHH------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence            45688888887642                  567899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCC
Q 013755          418 ILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       418 ~~A~~~~~~al~l~P~n~~  436 (437)
                      ++|+..|+++++++|++++
T Consensus        75 ~~A~~~y~~Al~l~p~~~~   93 (144)
T PRK15359         75 TTAINFYGHALMLDASHPE   93 (144)
T ss_pred             HHHHHHHHHHHhcCCCCcH
Confidence            9999999999999999875

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.96  E-value=1.6e-08  Score=81.06  Aligned_cols=106  Identities=19%  Similarity=0.162  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHH
Q 013755          312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS  391 (437)
Q Consensus       312 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~  391 (437)
                      ...++....+-.+|..+...|+.+.|++.|.++|.+.|..               .++|+|+|.++..+|+.++|+++.+
T Consensus        37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r---------------aSayNNRAQa~RLq~~~e~ALdDLn  101 (175)
T KOG4555|consen   37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPER---------------ASAYNNRAQALRLQGDDEEALDDLN  101 (175)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc---------------hHhhccHHHHHHHcCChHHHHHHHH
Confidence            3567888888899999999999999999999999999875               4789999999999999999999999


Q ss_pred             HHHHhCCCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          392 KVLDCDCHNV----KALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       392 ~al~~~p~~~----~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      +|+++.-...    .++..+|..|..+|+-+.|..+|+.|-++-.
T Consensus       102 ~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  102 KALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence            9999975443    6799999999999999999999999988754

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=5.5e-09  Score=88.82  Aligned_cols=63  Identities=30%  Similarity=0.462  Sum_probs=54.1

Q ss_pred             EEEEEEecCccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccc
Q 013755          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE  277 (437)
Q Consensus       214 v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~  277 (437)
                      ++|+.++.||++||++ .....|+.|.+|.+++++||+.||.+|.+|++..|.|||+-|||...
T Consensus        11 i~Y~~~~~dg~v~Dtt-~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~   73 (174)
T COG1047          11 LHYTLKVEDGEVVDTT-DENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD   73 (174)
T ss_pred             EEEEEEecCCcEEEcc-cccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence            4566666667777776 33478999999999999999999999999999999999999999764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.94  E-value=1.2e-08  Score=95.16  Aligned_cols=105  Identities=9%  Similarity=0.020  Sum_probs=92.9

Q ss_pred             HHHHHHhhHH-HhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          319 GRKKEEGNLL-FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       319 ~~~~~~g~~~-~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+..|..+ ++.|+|++|+..|++.+...|+...            ...+++.+|.+|+..|+|++|+..|.+++...
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~------------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y  210 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY------------QPNANYWLGQLNYNKGKKDDAAYYFASVVKNY  210 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4456666665 6789999999999999999987642            24678999999999999999999999999998


Q ss_pred             CCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          398 CHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       398 p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |++   +.+++++|.++..+|++++|+..|+++++..|++.
T Consensus       211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            875   78899999999999999999999999999999875

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.93  E-value=2.7e-08  Score=82.36  Aligned_cols=106  Identities=20%  Similarity=0.202  Sum_probs=96.0

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...++..|...++.|+|.+|+..|+......|...-            ...+.+.|+.+|++.++|.+|+..+++-++++
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y------------a~qAqL~l~yayy~~~~y~~A~a~~~rFirLh   77 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY------------AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH   77 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            567889999999999999999999999998887543            24678899999999999999999999999999


Q ss_pred             CCCH---HHHHHHHHHHHHhcc---------------HHHHHHHHHHHHHhCCCCC
Q 013755          398 CHNV---KALYRRAQAYMEIAD---------------LILAELDIKKAIEADPQNR  435 (437)
Q Consensus       398 p~~~---~a~~~~g~~~~~lg~---------------~~~A~~~~~~al~l~P~n~  435 (437)
                      |+++   -|+|.+|.+++.+..               ..+|..+|++.+..-|+++
T Consensus        78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence            9885   679999999999987               8999999999999999875

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.93  E-value=3e-09  Score=98.53  Aligned_cols=115  Identities=22%  Similarity=0.252  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHH
Q 013755          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC  390 (437)
Q Consensus       311 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~  390 (437)
                      .-.+++.+......+......++|.+++..+++.++..|.....           +...+--++.|+..-+++.+||+.|
T Consensus       262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i-----------r~~~~r~~c~C~~~d~~~~eAiqqC  330 (504)
T KOG0624|consen  262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI-----------RYNGFRVLCTCYREDEQFGEAIQQC  330 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce-----------eeeeeheeeecccccCCHHHHHHHH
Confidence            34567777888888999999999999999999999998875432           3445667889999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          391 SKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       391 ~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      .++|.++|+++.+|..+|.+|+.-..|+.|+.+|++|++++++|..
T Consensus       331 ~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~  376 (504)
T KOG0624|consen  331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR  376 (504)
T ss_pred             HHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence            9999999999999999999999999999999999999999999864

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.93  E-value=1.4e-09  Score=108.63  Aligned_cols=120  Identities=18%  Similarity=0.106  Sum_probs=100.1

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC---------CChHHHHH-HH---------hhhHHHhhhHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS---------FVDDEQKL-VK---------SLRVSCWLNSAAC  376 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~---------~~~~~~~~-~~---------~~~~~~~~nla~~  376 (437)
                      ...+.+...||.|--+++++.|+.+|++|+.++|...-         ...++.+. ..         .-.-.+|+-+|.+
T Consensus       419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v  498 (638)
T KOG1126|consen  419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV  498 (638)
T ss_pred             CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence            44679999999999999999999999999999885321         01122211 11         1113578999999


Q ss_pred             HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       377 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |+++++++.|.-+|++|++++|.|.-.+...|.++.++|+.++|+..|++|+.+||.|+
T Consensus       499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~  557 (638)
T KOG1126|consen  499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP  557 (638)
T ss_pred             eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999886

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.93  E-value=1e-09  Score=109.56  Aligned_cols=68  Identities=26%  Similarity=0.449  Sum_probs=51.6

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC----------------------------------CHHHHHHHHHHHHH
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCH----------------------------------NVKALYRRAQAYME  413 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~----------------------------------~~~a~~~~g~~~~~  413 (437)
                      ..|+.+|.||..+++++.||++|++|+++||+                                  +-.|||-+|.+|++
T Consensus       422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K  501 (638)
T KOG1126|consen  422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK  501 (638)
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence            44666666666666666666666666666664                                  44778999999999


Q ss_pred             hccHHHHHHHHHHHHHhCCCCC
Q 013755          414 IADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       414 lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +++++.|.-+|++|++++|.|.
T Consensus       502 qek~e~Ae~~fqkA~~INP~ns  523 (638)
T KOG1126|consen  502 QEKLEFAEFHFQKAVEINPSNS  523 (638)
T ss_pred             cchhhHHHHHHHhhhcCCccch
Confidence            9999999999999999999874

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=98.92  E-value=5.8e-09  Score=91.59  Aligned_cols=62  Identities=19%  Similarity=0.423  Sum_probs=52.4

Q ss_pred             EEEEEEecCccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccc
Q 013755          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE  277 (437)
Q Consensus       214 v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~  277 (437)
                      ++|+.++.+|++||++  ....|+.|.+|.++++|+|+.+|.+|.+|++..|.|+|+.|||...
T Consensus        11 l~Y~l~~~dG~v~dst--~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d   72 (196)
T PRK10737         11 LAYQVRTEDGVLVDES--PVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (196)
T ss_pred             EEEEEEeCCCCEEEec--CCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            3555555566667766  3478999999999999999999999999999999999999999754

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.91  E-value=6.9e-09  Score=108.99  Aligned_cols=107  Identities=7%  Similarity=0.020  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      +..+..++..|....+.|.+++|...+..++.+.|+..               .++.+++.++.+++++++|+..++++|
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~---------------~a~~~~a~~L~~~~~~eeA~~~~~~~l  147 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS---------------EAFILMLRGVKRQQGIEAGRAEIELYF  147 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH---------------HHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence            34477788889999999999999999999999988753               678888888888888888888888888


Q ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ..+|+++.+++.+|.++.++|+|++|++.|++++..+|++++
T Consensus       148 ~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~  189 (694)
T PRK15179        148 SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFEN  189 (694)
T ss_pred             hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHH
Confidence            888888888888888888888888888888888887776553

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.89  E-value=2.8e-08  Score=90.29  Aligned_cols=117  Identities=15%  Similarity=0.141  Sum_probs=58.4

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC------------ChHH-H------HHHHhhhHHHhhhHHHHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF------------VDDE-Q------KLVKSLRVSCWLNSAACCL  378 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~~~~-~------~~~~~~~~~~~~nla~~~~  378 (437)
                      +..+...|..++..|+|++|+..|++++...|.....            +.++ .      .........++.++|.++.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            4555566666666666666666666666655432100            0000 0      0000001134455555555


Q ss_pred             hccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          379 KLKDYQGAIELCSKVLDCD--CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       379 ~~~~~~~Ai~~~~~al~~~--p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      .+|++++|+..+.+++...  +.....++.+|.++..+|++++|...|++++..+|++
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  168 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR  168 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            5555555555555555432  3334455555555555566666666666666555554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.89  E-value=1.7e-08  Score=89.06  Aligned_cols=100  Identities=21%  Similarity=0.221  Sum_probs=75.6

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      .+.+-|..+..+|+|++|...|.+|+.. |.-.            .....+-|+|.|.+++|+++.|..+++++|+++|+
T Consensus       105 VLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~------------~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~  171 (250)
T COG3063         105 VLNNYGAFLCAQGRPEEAMQQFERALAD-PAYG------------EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ  171 (250)
T ss_pred             hhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCC------------CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence            3444444455555555555555555442 2111            12456889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          400 NVKALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      ++.++..++..+++.|+|-.|...+++...--+
T Consensus       172 ~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~  204 (250)
T COG3063         172 FPPALLELARLHYKAGDYAPARLYLERYQQRGG  204 (250)
T ss_pred             CChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence            999999999999999999999999998765433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.88  E-value=2.4e-08  Score=90.64  Aligned_cols=103  Identities=20%  Similarity=0.249  Sum_probs=82.1

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      .+...|..++..|++++|+..|++++...+..             .....+.++|.++..+|++++|+..+.+++..+|+
T Consensus       101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  167 (234)
T TIGR02521       101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP-------------QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ  167 (234)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhccccc-------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            34455566666666666666666666532111             12356888999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +..+++.+|.++..+|++++|+..+++++.+.|.++
T Consensus       168 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  203 (234)
T TIGR02521       168 RPESLLELAELYYLRGQYKDARAYLERYQQTYNQTA  203 (234)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999999999999977654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.88  E-value=1.3e-08  Score=91.25  Aligned_cols=92  Identities=14%  Similarity=0.113  Sum_probs=83.4

Q ss_pred             hCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013755          330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQ  409 (437)
Q Consensus       330 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~  409 (437)
                      ..++.++++..++++++..|.+.               ..|.++|.+|..+|++++|+..|+++++++|+++.+++.+|.
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~---------------~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~  115 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNS---------------EQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT  115 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            36777889999999999988764               679999999999999999999999999999999999999999


Q ss_pred             HH-HHhcc--HHHHHHHHHHHHHhCCCCCC
Q 013755          410 AY-MEIAD--LILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       410 ~~-~~lg~--~~~A~~~~~~al~l~P~n~~  436 (437)
                      ++ ...|+  +++|++.++++++++|+|.+
T Consensus       116 aL~~~~g~~~~~~A~~~l~~al~~dP~~~~  145 (198)
T PRK10370        116 VLYYQAGQHMTPQTREMIDKALALDANEVT  145 (198)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHhCCCChh
Confidence            85 67787  59999999999999999865

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=2.1e-09  Score=95.16  Aligned_cols=253  Identities=17%  Similarity=0.179  Sum_probs=158.7

Q ss_pred             cCCCeEEEEEEccCCCCCC--CCCCEEEEEEEEEEc--CCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEE
Q 013755           44 GNSGIKKKLLKNGVDWDTP--EFGDEVTIHYVGTLL--DGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAV  119 (437)
Q Consensus        44 ~~~g~~~~~~~~G~g~~~~--~~gd~V~v~y~~~~~--~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~  119 (437)
                      .-.||+++++..|.| +-|  ..|..|++||.....  .++++|+|+.-|.|..+++|...-.+-|+..|..|+++|.+.
T Consensus         8 ~~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Evaq   86 (329)
T KOG0545|consen    8 NVEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQ   86 (329)
T ss_pred             cchhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHH
Confidence            456999999999999 554  689999999987775  467999999999999999999999999999999999999999


Q ss_pred             EEEecCCC----CCC----------CCCC-----------------------CC-CCCCCCcEEEEEEEeceeeeeccCC
Q 013755          120 FTFTLPSE----LRF----------GVEG-----------------------RD-SLPPNSVVQFEVELVSWITVVDLSK  161 (437)
Q Consensus       120 ~~~~ip~~----~ay----------g~~~-----------------------~~-~i~~~~~~~f~v~l~~~~~~~d~~~  161 (437)
                      |  +|.--    |.|          |...                       -. ....-++++|.++|..+..+.+...
T Consensus        87 F--~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~  164 (329)
T KOG0545|consen   87 F--WCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQR  164 (329)
T ss_pred             h--hhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhcc
Confidence            8  54321    111          1110                       00 0111367888888888754433221


Q ss_pred             CccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEe-cCccEEeecCCCCCCCeEEE
Q 013755          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARL-EDGTVFEKKGYDGEQPLEFI  240 (437)
Q Consensus       162 dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~-~~g~~fd~~~~~~~~p~~f~  240 (437)
                      +            .|....+ ..              ....+               .+ ..|..            -|.
T Consensus       165 e------------~Wqlsdd-eK--------------mkav~---------------~l~q~GN~------------lfk  190 (329)
T KOG0545|consen  165 E------------TWQLSDD-EK--------------MKAVP---------------VLHQEGNR------------LFK  190 (329)
T ss_pred             c------------cccCCch-Hh--------------hhhhH---------------HHHHhhhh------------hhh
Confidence            1            0100000 00              00000               00 00000            011


Q ss_pred             cCCC-CcchHHHHH---hcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeecccCCCCCCh-HHHH
Q 013755          241 TDEE-QVIAGLDRV---AATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNN-QGKI  315 (437)
Q Consensus       241 lg~~-~~~~gl~~~---l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~~~~-~~~~  315 (437)
                      .|.. ........|   |..+...|                                           .+|+-.. +-..
T Consensus       191 ~~~ykEA~~~YreAi~~l~~L~lkE-------------------------------------------kP~e~eW~eLdk  227 (329)
T KOG0545|consen  191 LGRYKEASSKYREAIICLRNLQLKE-------------------------------------------KPGEPEWLELDK  227 (329)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHhcc-------------------------------------------CCCChHHHHHHH
Confidence            1110 111111111   11111100                                           1111100 1111


Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      .....+.+....++..++|-+++++....|...|.+               ..+|+.+|.++...=+.++|..++.++|+
T Consensus       228 ~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~n---------------vKA~frRakAhaa~Wn~~eA~~D~~~vL~  292 (329)
T KOG0545|consen  228 MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGN---------------VKAYFRRAKAHAAVWNEAEAKADLQKVLE  292 (329)
T ss_pred             hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCch---------------HHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence            233456678888999999999999999999988765               47899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHH
Q 013755          396 CDCHNVKALYRRAQAY  411 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~  411 (437)
                      ++|.-..+-.+--.++
T Consensus       293 ldpslasvVsrElr~l  308 (329)
T KOG0545|consen  293 LDPSLASVVSRELRLL  308 (329)
T ss_pred             cChhhHHHHHHHHHHH
Confidence            9998877665544443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.87  E-value=5.7e-09  Score=77.49  Aligned_cols=64  Identities=22%  Similarity=0.381  Sum_probs=60.7

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          373 SAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       373 la~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      |...|++.++|++|+.++++++.++|+++.+++.+|.++..+|+|.+|+.+|++++++.|++++
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence            3568899999999999999999999999999999999999999999999999999999998764

>PRK12370 invasion protein regulator; Provisional

Probab=98.86  E-value=2e-08  Score=104.52  Aligned_cols=103  Identities=9%  Similarity=-0.109  Sum_probs=90.6

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..+...|..+...|++++|+..|++|+++.|++.               .+++++|.++..+|++++|+..++++++++
T Consensus       338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~  402 (553)
T PRK12370        338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA---------------DIKYYYGWNLFMAGQLEEALQTINECLKLD  402 (553)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            34456678889999999999999999999998764               668999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEAD-PQNR  435 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~  435 (437)
                      |.++.+++.++.+++.+|++++|+..+++++... |+++
T Consensus       403 P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~  441 (553)
T PRK12370        403 PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNP  441 (553)
T ss_pred             CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCH
Confidence            9998888888888888999999999999999875 5554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.83  E-value=2.3e-08  Score=109.03  Aligned_cols=91  Identities=12%  Similarity=0.119  Sum_probs=78.5

Q ss_pred             hCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013755          330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQ  409 (437)
Q Consensus       330 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~  409 (437)
                      ..|++++|+..|++++...|+                ..+++++|.++.++|++++|+..++++++++|+++.+++++|.
T Consensus       588 ~~Gr~~eAl~~~~~AL~l~P~----------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~  651 (987)
T PRK09782        588 IPGQPELALNDLTRSLNIAPS----------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY  651 (987)
T ss_pred             hCCCHHHHHHHHHHHHHhCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            335666666666666655542                3678999999999999999999999999999999999999999


Q ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          410 AYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       410 ~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ++..+|++++|+..|+++++++|++++
T Consensus       652 aL~~~G~~eeAi~~l~~AL~l~P~~~~  678 (987)
T PRK09782        652 ALWDSGDIAQSREMLERAHKGLPDDPA  678 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999864

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=9.8e-09  Score=101.92  Aligned_cols=90  Identities=23%  Similarity=0.427  Sum_probs=78.5

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCCCC
Q 013755           62 PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPN  141 (437)
Q Consensus        62 ~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~~~  141 (437)
                      ++.||.|+|+|+++. ||..|.+...  ..+.|.||+|++||||+.+|.||+.|++..|++++|.+|.-+..      ++
T Consensus       158 a~~gD~v~IDf~g~i-Dg~~fegg~a--e~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------aG  228 (441)
T COG0544         158 AENGDRVTIDFEGSV-DGEEFEGGKA--ENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------AG  228 (441)
T ss_pred             cccCCEEEEEEEEEE-cCeeccCccc--cCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh------CC
Confidence            999999999999965 9999888655  45999999999999999999999999999998899998776665      67


Q ss_pred             CcEEEEEEEeceeeeeccC
Q 013755          142 SVVQFEVELVSWITVVDLS  160 (437)
Q Consensus       142 ~~~~f~v~l~~~~~~~d~~  160 (437)
                      .+..|.|+|..+....-+.
T Consensus       229 K~a~F~V~vkeVk~~elpE  247 (441)
T COG0544         229 KEATFKVKVKEVKKRELPE  247 (441)
T ss_pred             CceEEEEEEEEEeecCCCC
Confidence            8899999999987655444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.81  E-value=1e-08  Score=74.21  Aligned_cols=64  Identities=17%  Similarity=0.319  Sum_probs=57.9

Q ss_pred             HHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV  401 (437)
Q Consensus       323 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~  401 (437)
                      ..|..+++.|+|++|+..|+++++..|.+               ..+++.+|.|+.++|++++|+..|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDN---------------PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTH---------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            57899999999999999999999998764               47899999999999999999999999999999985

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=2e-08  Score=96.53  Aligned_cols=97  Identities=22%  Similarity=0.245  Sum_probs=71.9

Q ss_pred             HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHH
Q 013755          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA  403 (437)
Q Consensus       324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a  403 (437)
                      .||-|--+++.++|+..|++||+++|...               .+|.-+|.-|..+++-..|+..|++|++++|.+-+|
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~---------------~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA  400 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKLNPKYL---------------SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA  400 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhcCcchh---------------HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence            46777778888899999999998887643               556677777777777777777777777777777777


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          404 LYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       404 ~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ||.+|++|.-|+.+.=|+-+|++|+++.|+|+
T Consensus       401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs  432 (559)
T KOG1155|consen  401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDS  432 (559)
T ss_pred             HhhhhHHHHHhcchHHHHHHHHHHHhcCCCch
Confidence            77777777777777777777777777777664

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.80  E-value=2.9e-08  Score=94.98  Aligned_cols=93  Identities=13%  Similarity=-0.045  Sum_probs=82.2

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013755          332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAY  411 (437)
Q Consensus       332 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~  411 (437)
                      ++.+.++..+.++|...+.++           ......|+++|.+|..+|++.+|+..|+++++++|+++.+|+.+|.++
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~-----------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  108 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTD-----------EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYL  108 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCc-----------HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            466778888999887554332           123577999999999999999999999999999999999999999999


Q ss_pred             HHhccHHHHHHHHHHHHHhCCCCC
Q 013755          412 MEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       412 ~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ..+|++++|+..|+++++++|++.
T Consensus       109 ~~~g~~~~A~~~~~~Al~l~P~~~  132 (296)
T PRK11189        109 TQAGNFDAAYEAFDSVLELDPTYN  132 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999875

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.79  E-value=7.2e-08  Score=86.84  Aligned_cols=102  Identities=18%  Similarity=0.124  Sum_probs=94.1

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+..+|...+..|+|..|+..++++....|.+.               .+|+-+|.+|.+.|+++.|...|.+++++.
T Consensus       100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~---------------~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~  164 (257)
T COG5010         100 RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW---------------EAWNLLGAALDQLGRFDEARRAYRQALELA  164 (257)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh---------------hhhhHHHHHHHHccChhHHHHHHHHHHHhc
Confidence            34555699999999999999999999999999876               569999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      |+++.++.|+|..|+-.|+++.|...+..+...-+.|
T Consensus       165 ~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad  201 (257)
T COG5010         165 PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD  201 (257)
T ss_pred             cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Confidence            9999999999999999999999999999998776654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.78  E-value=5.7e-08  Score=102.93  Aligned_cols=98  Identities=13%  Similarity=0.096  Sum_probs=49.8

Q ss_pred             HHHhhHHHhCCcHHH----HHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          322 KEEGNLLFKNGKYER----AGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       322 ~~~g~~~~~~g~~~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...|..++..|++++    |+..|++++...|.+.               .++.++|.++.++|++++|+..++++++++
T Consensus       250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~l~~~g~~~eA~~~l~~al~l~  314 (656)
T PRK15174        250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV---------------RIVTLYADALIRTGQNEKAIPLLQQSLATH  314 (656)
T ss_pred             HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            344555555555553    4555555555544321               334455555555555555555555555555


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      |+++.+++.+|.+|..+|++++|+..|++++..+|++
T Consensus       315 P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~  351 (656)
T PRK15174        315 PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT  351 (656)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            5555555555555555555555555555555554443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.78  E-value=4e-09  Score=97.90  Aligned_cols=109  Identities=19%  Similarity=0.205  Sum_probs=101.6

Q ss_pred             ChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHH
Q 013755          310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL  389 (437)
Q Consensus       310 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~  389 (437)
                      ..++.++++...+-.+..++..|.++.|+.+|..|+.+.|...               .+|.+++.++++++++..|+.+
T Consensus       106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a---------------~l~~kr~sv~lkl~kp~~airD  170 (377)
T KOG1308|consen  106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLA---------------ILYAKRASVFLKLKKPNAAIRD  170 (377)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchh---------------hhcccccceeeeccCCchhhhh
Confidence            3567889999999999999999999999999999999988753               5689999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          390 CSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       390 ~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      |..|++++|+..+.|-.++.++..+|+|++|..+|..|++++-+
T Consensus       171 ~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  171 CDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             hhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999998743

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=4.3e-08  Score=94.30  Aligned_cols=99  Identities=17%  Similarity=0.102  Sum_probs=68.8

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+...|..|...++-..|+..|++|++++|.+.               .+|+-||++|.-++.+.-|+-+|++|+++.
T Consensus       364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy---------------RAWYGLGQaYeim~Mh~YaLyYfqkA~~~k  428 (559)
T KOG1155|consen  364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY---------------RAWYGLGQAYEIMKMHFYALYYFQKALELK  428 (559)
T ss_pred             hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH---------------HHHhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence            34555678889999999999999999999998765               446666666666666666666666666666


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      |++...|.-+|.||.++++.++|+.+|++|+...
T Consensus       429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~  462 (559)
T KOG1155|consen  429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG  462 (559)
T ss_pred             CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence            6666666666666666666666666666665543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.77  E-value=6.1e-08  Score=102.72  Aligned_cols=103  Identities=14%  Similarity=0.014  Sum_probs=95.0

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..+...|..++..|++++|+..|++++...|.+.               .++.++|.+|.++|++++|+..|+++++.+
T Consensus       284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~---------------~a~~~La~~l~~~G~~~eA~~~l~~al~~~  348 (656)
T PRK15174        284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP---------------YVRAMYARALRQVGQYTAASDEFVQLAREK  348 (656)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            45677889999999999999999999999988753               568899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |++..+++++|.++..+|++++|+..|+++++++|++.
T Consensus       349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            99998888899999999999999999999999999864

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.75  E-value=1.5e-07  Score=86.78  Aligned_cols=105  Identities=11%  Similarity=0.077  Sum_probs=91.3

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc--------cCHHHHHHHH
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL--------KDYQGAIELC  390 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--------~~~~~Ai~~~  390 (437)
                      ..+...|..+++.+++++|+..|+++++..|++...            ..+++++|.+++++        +++++|+..+
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~  138 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF  138 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence            456888999999999999999999999999876532            24678899999876        8999999999


Q ss_pred             HHHHHhCCCCHHHH-----------------HHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          391 SKVLDCDCHNVKAL-----------------YRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       391 ~~al~~~p~~~~a~-----------------~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++++..+|++..++                 +.+|..|+.+|++.+|+..|+++++..|+++
T Consensus       139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~  200 (235)
T TIGR03302       139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTP  200 (235)
T ss_pred             HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCc
Confidence            99999999986442                 4678899999999999999999999988765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.75  E-value=8.9e-08  Score=108.06  Aligned_cols=117  Identities=21%  Similarity=0.207  Sum_probs=96.6

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHH-HHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQK-LVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~-~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      ...+...|..+++.|++++|+..|+++++..|.....  ..+. .+......++.++|.++.+.|++++|+..|++++++
T Consensus       303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~--~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~  380 (1157)
T PRK11447        303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR--DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV  380 (1157)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch--hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            4567788999999999999999999999988765421  1111 111122334567789999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +|++..+++.+|.+|..+|++++|++.|+++++++|++..
T Consensus       381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~  420 (1157)
T PRK11447        381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN  420 (1157)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999999999999998753

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.74  E-value=2.6e-08  Score=74.96  Aligned_cols=67  Identities=21%  Similarity=0.230  Sum_probs=58.0

Q ss_pred             hhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          365 LRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD-------CHNVKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       365 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      ..+.+++|+|.+|..+|+|++|+.+|++++++.       |..+.+++++|.++..+|++++|+..+++|+++.
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            346789999999999999999999999999762       1225789999999999999999999999999873

...

>PLN02789 farnesyltranstransferase

Probab=98.74  E-value=1.2e-07  Score=91.16  Aligned_cols=105  Identities=15%  Similarity=0.040  Sum_probs=91.2

Q ss_pred             HHHHHHHHhhHHHhCC-cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCH--HHHHHHHHHH
Q 013755          317 AAGRKKEEGNLLFKNG-KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY--QGAIELCSKV  393 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~--~~Ai~~~~~a  393 (437)
                      ....+..+|..+...+ ++++|+..+.+++..+|.+.               .+|++++.++.++++.  .+++.+++++
T Consensus        70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny---------------qaW~~R~~~l~~l~~~~~~~el~~~~ka  134 (320)
T PLN02789         70 NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY---------------QIWHHRRWLAEKLGPDAANKELEFTRKI  134 (320)
T ss_pred             hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch---------------HHhHHHHHHHHHcCchhhHHHHHHHHHH
Confidence            3445667777777777 57899999999998887754               5699999998888874  7889999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          394 LDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       394 l~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      |+.+|+|..||+.++.++..+++|++|++++.++|+++|+|..
T Consensus       135 l~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s  177 (320)
T PLN02789        135 LSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS  177 (320)
T ss_pred             HHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh
Confidence            9999999999999999999999999999999999999999864

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.73  E-value=1.4e-07  Score=85.97  Aligned_cols=105  Identities=13%  Similarity=0.137  Sum_probs=96.4

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ..+++.|..+++.|+|..|...|..-++..|+....            ..+++.||.|++.+|+|..|...|..+.+-.|
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P  209 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------------PNAYYWLGESLYAQGDYEDAAYIFARVVKDYP  209 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------------chhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence            338999999999999999999999999999986533            57899999999999999999999999999988


Q ss_pred             CC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          399 HN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       399 ~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++   +.+++.+|.|...+|+.++|...|+++++--|+..
T Consensus       210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            77   57799999999999999999999999999999865

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.72  E-value=9.7e-08  Score=100.46  Aligned_cols=103  Identities=10%  Similarity=-0.108  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      .+........+..+++.+++++|+..+++++...|++.               ..++++|.++.++|+|++|+..|++++
T Consensus       117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~---------------~~~~~~a~~l~~~g~~~~A~~~y~~~~  181 (694)
T PRK15179        117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA---------------REILLEAKSWDEIGQSEQADACFERLS  181 (694)
T ss_pred             CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH---------------HHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            45567788899999999999999999999999998764               679999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      ..+|++++++..+|.++..+|+.++|...|++|+++..
T Consensus       182 ~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        182 RQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999998753

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.72  E-value=4.9e-08  Score=81.71  Aligned_cols=83  Identities=16%  Similarity=0.051  Sum_probs=75.1

Q ss_pred             HHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH
Q 013755          339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLI  418 (437)
Q Consensus       339 ~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~  418 (437)
                      ..|++++...|.+               ..+.+.+|.++++.+++++|+..+++++..+|.++.+++++|.++..+|+++
T Consensus         4 ~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~   68 (135)
T TIGR02552         4 ATLKDLLGLDSEQ---------------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE   68 (135)
T ss_pred             hhHHHHHcCChhh---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            3577888877654               2558899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCC
Q 013755          419 LAELDIKKAIEADPQNRN  436 (437)
Q Consensus       419 ~A~~~~~~al~l~P~n~~  436 (437)
                      +|+..|++++.++|.+.+
T Consensus        69 ~A~~~~~~~~~~~p~~~~   86 (135)
T TIGR02552        69 EAIDAYALAAALDPDDPR   86 (135)
T ss_pred             HHHHHHHHHHhcCCCChH
Confidence            999999999999998754

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK01490 tig trigger factor; Provisional

Probab=98.70  E-value=5.8e-08  Score=97.97  Aligned_cols=91  Identities=25%  Similarity=0.491  Sum_probs=74.2

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCC
Q 013755           60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLP  139 (437)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~  139 (437)
                      +.++.||.|+|+|+++. +|+.|+++..  .++.|.+|.+.+++||+++|.||++|++++|++.+|.+  |+...    -
T Consensus       156 ~~~~~gD~V~vd~~~~~-~g~~~~~~~~--~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~--~~~~~----l  226 (435)
T PRK01490        156 RPAENGDRVTIDFVGSI-DGEEFEGGKA--EDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPED--YHAED----L  226 (435)
T ss_pred             ccCCCCCEEEEEEEEEE-CCEECcCCCC--CceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccc--ccccc----C
Confidence            35899999999999997 8999887644  67999999999999999999999999999995555554  43322    1


Q ss_pred             CCCcEEEEEEEeceeeeecc
Q 013755          140 PNSVVQFEVELVSWITVVDL  159 (437)
Q Consensus       140 ~~~~~~f~v~l~~~~~~~d~  159 (437)
                      ++.+..|.|++.++....-+
T Consensus       227 agk~~~f~v~v~~V~~~~~p  246 (435)
T PRK01490        227 AGKEATFKVTVKEVKEKELP  246 (435)
T ss_pred             CCCeEEEEEEEEEeccCCCC
Confidence            67889999999998765433

>TIGR00115 tig trigger factor

Probab=98.69  E-value=5.7e-08  Score=97.24  Aligned_cols=100  Identities=23%  Similarity=0.368  Sum_probs=78.9

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCC
Q 013755           60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLP  139 (437)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~  139 (437)
                      +.++.||.|+|+|+++. +|+.|+++..  .++.|.+|.+.+++||+++|.||++|++++|  .++....|+..+.    
T Consensus       145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~~--~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~--~v~~p~~~~~~~~----  215 (408)
T TIGR00115       145 RAAEKGDRVTIDFEGFI-DGEAFEGGKA--ENFSLELGSGQFIPGFEEQLVGMKAGEEKEI--KVTFPEDYHAEEL----  215 (408)
T ss_pred             cccCCCCEEEEEEEEEE-CCEECcCCCC--CCeEEEECCCCcchhHHHHhCCCCCCCeeEE--EecCccccCcccC----
Confidence            46899999999999986 8999988653  7899999999999999999999999999999  6655555664432    


Q ss_pred             CCCcEEEEEEEeceeeeeccCCCccceEE
Q 013755          140 PNSVVQFEVELVSWITVVDLSKDGGIVKK  168 (437)
Q Consensus       140 ~~~~~~f~v~l~~~~~~~d~~~dg~v~k~  168 (437)
                      ++.+..|.|++.++....-+.=|..+.+.
T Consensus       216 ~gk~~~f~v~i~~I~~~~~peldDefak~  244 (408)
T TIGR00115       216 AGKEATFKVTVKEVKEKELPELDDEFAKE  244 (408)
T ss_pred             CCCeEEEEEEEEEeccCCCCCCCHHHHHh
Confidence            67889999999998765433333333333

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.69  E-value=5.7e-08  Score=92.20  Aligned_cols=114  Identities=23%  Similarity=0.155  Sum_probs=69.2

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC-----------Ch-HH----HHHHH---hhhHHHhhhHHHHH
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-----------VD-DE----QKLVK---SLRVSCWLNSAACC  377 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-----------~~-~~----~~~~~---~~~~~~~~nla~~~  377 (437)
                      ....+...|..+.+.|++++|+..|++|++..|.+...           .. ++    .....   .-...++..+|.+|
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~  224 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAY  224 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHh
Confidence            34567788999999999999999999999999975431           11 11    01111   11234567788888


Q ss_pred             HhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          378 LKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       378 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      ..+|++++|+.++++++..+|+++..+..+|.++...|++++|...++++++.
T Consensus       225 ~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  225 LQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            88888888888888888888888888888888888888888888888888753

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.68  E-value=3.4e-07  Score=82.48  Aligned_cols=107  Identities=21%  Similarity=0.180  Sum_probs=88.8

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      ....++..|..++..|+|.+|+..|++.+...|..+-            ...+.+.+|.++++.++|.+|+..+++.++.
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------------APQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999887642            3577899999999999999999999999999


Q ss_pred             CCCCH---HHHHHHHHHHHHhcc-----------HHHHHHHHHHHHHhCCCCC
Q 013755          397 DCHNV---KALYRRAQAYMEIAD-----------LILAELDIKKAIEADPQNR  435 (437)
Q Consensus       397 ~p~~~---~a~~~~g~~~~~lg~-----------~~~A~~~~~~al~l~P~n~  435 (437)
                      .|+++   .++|.+|.+++.+.+           ..+|+..|+..+..-|+++
T Consensus        72 yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~  124 (203)
T PF13525_consen   72 YPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE  124 (203)
T ss_dssp             -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred             CCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence            99875   689999999877643           4589999999999999875

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.68  E-value=6.2e-08  Score=94.46  Aligned_cols=64  Identities=13%  Similarity=0.034  Sum_probs=61.5

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA---LYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a---~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      ..+++|+|.+|+++|+|++|+..|++||+++|++..+   ||++|.||..+|++++|+++|++|+++
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5779999999999999999999999999999999865   999999999999999999999999997

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1e-08  Score=95.69  Aligned_cols=126  Identities=33%  Similarity=0.354  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCCh---HH-HHHHHhhhHHHhhhHHHHHHhccCHHHH
Q 013755          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD---DE-QKLVKSLRVSCWLNSAACCLKLKDYQGA  386 (437)
Q Consensus       311 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~---~~-~~~~~~~~~~~~~nla~~~~~~~~~~~A  386 (437)
                      ....+...+..++.|+..|+.++|..|...|.++++.....+....   ++ +..+..++..++.|++.|-++.+.+..|
T Consensus       215 ~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a  294 (372)
T KOG0546|consen  215 FDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGA  294 (372)
T ss_pred             cchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcc
Confidence            4456778888999999999999999999999999998763221111   11 3457788888999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          387 IELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       387 i~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +..+..+++.++...++||+++.+++.+.++++|+++++.|....|++.+
T Consensus       295 ~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~  344 (372)
T KOG0546|consen  295 RFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA  344 (372)
T ss_pred             eeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence            99999999999999999999999999999999999999999999998753

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.67  E-value=1.3e-07  Score=102.07  Aligned_cols=103  Identities=11%  Similarity=0.051  Sum_probs=95.1

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..+...|..+...|++++|+..|++++...|.+.               .++.+++.++...+++++|+..++++++.+
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~la~~l~~~g~~~eA~~~l~~~l~~~  113 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND---------------DYQRGLILTLADAGQYDEALVKAKQLVSGA  113 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            34478889999999999999999999999988754               557899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      |+++. ++.+|.++...|++++|+..|+++++++|++++
T Consensus       114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~  151 (765)
T PRK10049        114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQ  151 (765)
T ss_pred             CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999 999999999999999999999999999999864

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.67  E-value=1.7e-07  Score=95.31  Aligned_cols=103  Identities=22%  Similarity=0.150  Sum_probs=95.4

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHH--HHHHHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIE--LCSKVLD  395 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~--~~~~al~  395 (437)
                      +..++..|..+..+|++.+|.+.|..|+.++|++.               .+...+|.|+.+.|+-.-|..  ....+++
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv---------------~s~~Ala~~lle~G~~~la~~~~~L~dalr  748 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV---------------PSMTALAELLLELGSPRLAEKRSLLSDALR  748 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc---------------HHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence            45668889999999999999999999999999875               557889999999999888887  9999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +||.|++|||.+|.++..+|+.++|.++|..|+++++.+|
T Consensus       749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            9999999999999999999999999999999999999987

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.67  E-value=2.3e-07  Score=104.80  Aligned_cols=119  Identities=18%  Similarity=0.178  Sum_probs=97.2

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCC-----------hHHH-H---------------HHHhhhHHHh
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV-----------DDEQ-K---------------LVKSLRVSCW  370 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-----------~~~~-~---------------~~~~~~~~~~  370 (437)
                      ...+...|..++..|++++|+..|+++++..|.+....           .++. .               ....+....+
T Consensus       385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~  464 (1157)
T PRK11447        385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRL  464 (1157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHH
Confidence            34567789999999999999999999999887643210           0000 0               0112224456


Q ss_pred             hhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          371 LNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       371 ~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      .++|.++...|++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++++
T Consensus       465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~  530 (1157)
T PRK11447        465 AQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE  530 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            778999999999999999999999999999999999999999999999999999999999998864

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.66  E-value=2.8e-07  Score=95.29  Aligned_cols=104  Identities=16%  Similarity=0.154  Sum_probs=66.1

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..+..+||.+|..|++++|+..+.++++.+|...               .+|..||.||.++|+.++|+...-.|-.
T Consensus       137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~---------------~ay~tL~~IyEqrGd~eK~l~~~llAAH  201 (895)
T KOG2076|consen  137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP---------------IAYYTLGEIYEQRGDIEKALNFWLLAAH  201 (895)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch---------------hhHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            3478899999999999999999999999999988764               3355555555555555444444444444


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      ++|++...|.+++.....+|++++|+-+|.+|++++|.|
T Consensus       202 L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n  240 (895)
T KOG2076|consen  202 LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN  240 (895)
T ss_pred             cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc
Confidence            444444444444444444444444444444444444443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.66  E-value=2.4e-07  Score=100.08  Aligned_cols=104  Identities=9%  Similarity=0.007  Sum_probs=97.1

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+...|..+...|++++|+..+++++...|.+.               .+++++|.++..+|++++|+..++++++++
T Consensus       359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~---------------~l~~~lA~l~~~~g~~~~A~~~l~~al~l~  423 (765)
T PRK10049        359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ---------------GLRIDYASVLQARGWPRAAENELKKAEVLE  423 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence            44566788899999999999999999999988764               679999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      |++..+++.+|.+++.+++|++|+..++++++..|+|+.
T Consensus       424 Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~  462 (765)
T PRK10049        424 PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG  462 (765)
T ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999999999999864

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.65  E-value=5.7e-07  Score=73.21  Aligned_cols=99  Identities=18%  Similarity=0.014  Sum_probs=86.6

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ..+++.|..+-..|+.++|+.+|++++......            ..+..++.++|.++..+|++++|+..+++++...|
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~------------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p   69 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSG------------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFP   69 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            357889999999999999999999999864332            12456889999999999999999999999999988


Q ss_pred             C---CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755          399 H---NVKALYRRAQAYMEIADLILAELDIKKAIE  429 (437)
Q Consensus       399 ~---~~~a~~~~g~~~~~lg~~~~A~~~~~~al~  429 (437)
                      +   +......++.++..+|++++|+..+-.++.
T Consensus        70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   70 DDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8   778888899999999999999999988774

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.65  E-value=3.5e-08  Score=72.09  Aligned_cols=59  Identities=34%  Similarity=0.384  Sum_probs=55.1

Q ss_pred             HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       377 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +++.|+|++|+..|++++..+|++..+++.+|.||...|++++|...+++++..+|+++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~   59 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP   59 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence            35789999999999999999999999999999999999999999999999999999864

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.65  E-value=3.1e-07  Score=78.07  Aligned_cols=98  Identities=18%  Similarity=0.193  Sum_probs=82.1

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      .......|..++..|+|++|+..|++++...++.            .+...+.++||.+++.+++|++|+..++. +.-.
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~------------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~  114 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDP------------ELKPLARLRLARILLQQGQYDEALATLQQ-IPDE  114 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCc
Confidence            4556778999999999999999999999865332            23456788999999999999999999966 3334


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAI  428 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al  428 (437)
                      +-.+.++..+|.+|..+|++++|+..|++||
T Consensus       115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  115 AFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            4456788999999999999999999999985

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.64  E-value=6.9e-08  Score=70.48  Aligned_cols=68  Identities=31%  Similarity=0.330  Sum_probs=60.2

Q ss_pred             HHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013755          328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRR  407 (437)
Q Consensus       328 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~  407 (437)
                      +++.|+|++|+..|++++...|.+.               .+++.+|.||+++|++++|...+++++..+|+++..+..+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~---------------~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNP---------------EARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSH---------------HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            4788999999999999999998764               6788999999999999999999999999999988887777


Q ss_pred             HHH
Q 013755          408 AQA  410 (437)
Q Consensus       408 g~~  410 (437)
                      +++
T Consensus        66 a~i   68 (68)
T PF14559_consen   66 AQI   68 (68)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            653

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.64  E-value=7.5e-08  Score=84.08  Aligned_cols=132  Identities=19%  Similarity=0.129  Sum_probs=109.6

Q ss_pred             CCCceEEEEEEEeeeecccCCCCCChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhh
Q 013755          286 PSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSL  365 (437)
Q Consensus       286 p~~~~l~~~vel~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~  365 (437)
                      |-+..+.-+|.|..+.+....-.|+.+   +++..++++|+.|=..|-+..|.-.|.++|.+.|..+             
T Consensus        36 ~~qp~lqqEV~iarlsqlL~~~~l~~e---eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~-------------   99 (297)
T COG4785          36 PLQPTLQQEVILARMSQILASRALTDE---ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP-------------   99 (297)
T ss_pred             cCCccHHHHHHHHHHHHHHHhccCChH---HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH-------------
Confidence            333333334444444333333334333   4588899999999999999999999999999988754             


Q ss_pred             hHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       366 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                        .+++-+|.-+...|+|+.|.+.|+.++++||.+.-|+.+||.+++.-|+|.-|.+++.+-.+-||++|
T Consensus       100 --~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785         100 --EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             --HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence              77999999999999999999999999999999999999999999999999999999999999999987

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.64  E-value=5.9e-07  Score=83.10  Aligned_cols=106  Identities=14%  Similarity=0.117  Sum_probs=91.3

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..++..|..++..|+|++|+..|++++...|..+            ....+.+++|.+|+++++|.+|+..+++.++.+
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            55678899999999999999999999999988653            234667899999999999999999999999999


Q ss_pred             CCC---HHHHHHHHHHHHHhcc------------------HHHHHHHHHHHHHhCCCCC
Q 013755          398 CHN---VKALYRRAQAYMEIAD------------------LILAELDIKKAIEADPQNR  435 (437)
Q Consensus       398 p~~---~~a~~~~g~~~~~lg~------------------~~~A~~~~~~al~l~P~n~  435 (437)
                      |++   +.++|.+|.++..++.                  -.+|+..|++.++.-|+.+
T Consensus       100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~  158 (243)
T PRK10866        100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ  158 (243)
T ss_pred             cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence            987   4779999999766641                  3578899999999999864

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.63  E-value=3.9e-07  Score=90.52  Aligned_cols=104  Identities=15%  Similarity=0.096  Sum_probs=65.3

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  400 (437)
                      +...+..+.+.|+|++|+..|++++...|....          ......++++|.++.+++++++|+..|+++++.+|++
T Consensus       144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  213 (389)
T PRK11788        144 LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR----------VEIAHFYCELAQQALARGDLDAARALLKKALAADPQC  213 (389)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch----------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence            334444455555555555555555444332110          0112345667777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      ..+++.+|.+|..+|++++|++.|+++++.+|.+
T Consensus       214 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        214 VRASILLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            7777777777777777777777777777776654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.59  E-value=4.5e-07  Score=99.20  Aligned_cols=104  Identities=27%  Similarity=0.258  Sum_probs=70.9

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..+...|..++..|+|++|+..|++++...|...               .+++.+|.+++..|++++|+..++++++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~  187 (899)
T TIGR02917       123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSL---------------YAKLGLAQLALAENRFDEARALIDEVLT  187 (899)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---------------hhHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4466778899999999999999999999998877643               3355556666666666666666666666


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      .+|.+..+++.+|.++..+|++++|+..|++++.++|++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~  226 (899)
T TIGR02917       188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN  226 (899)
T ss_pred             hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence            666666666666666666666666666666666665554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.59  E-value=3e-07  Score=68.11  Aligned_cols=70  Identities=24%  Similarity=0.387  Sum_probs=63.3

Q ss_pred             hhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHH
Q 013755          325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKAL  404 (437)
Q Consensus       325 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~  404 (437)
                      ...+++.++|++|+..+++++.+.|.+.               .++..+|.|+.++|+|.+|+..++++++.+|++..+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~---------------~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDP---------------ELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccc---------------hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence            4678999999999999999999999865               5689999999999999999999999999999998887


Q ss_pred             HHHHH
Q 013755          405 YRRAQ  409 (437)
Q Consensus       405 ~~~g~  409 (437)
                      ..++.
T Consensus        67 ~~~a~   71 (73)
T PF13371_consen   67 ALRAM   71 (73)
T ss_pred             HHHHh
Confidence            66554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.58  E-value=6.6e-07  Score=88.93  Aligned_cols=113  Identities=15%  Similarity=0.050  Sum_probs=61.2

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC------------C-hHHH---HHHH----hhhHHHhhhHHHHHHhc
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF------------V-DDEQ---KLVK----SLRVSCWLNSAACCLKL  380 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~-~~~~---~~~~----~~~~~~~~nla~~~~~~  380 (437)
                      +...|..+++.+++++|+..|+++++..|.....            . ++..   ....    .....++..++.+|.++
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~  262 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL  262 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence            4456666677777777777777777665542210            0 0000   0000    00112345556666666


Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          381 KDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       381 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      |++++|+..++++++.+|+... +..++.++...|++++|+..|+++++..|++
T Consensus       263 g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~  315 (389)
T PRK11788        263 GDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSL  315 (389)
T ss_pred             CCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence            6666666666666666665433 3556666666666666666666666666654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=1.2e-07  Score=90.15  Aligned_cols=115  Identities=18%  Similarity=0.172  Sum_probs=96.2

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+.+++-+|..++...+.+.|+.+|+++|.+.|.....   ...-...-....+-+.|.-.++.|+|..|.+.|..+|.
T Consensus       201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s---k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~  277 (486)
T KOG0550|consen  201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS---KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN  277 (486)
T ss_pred             chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhH---HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence            446778889999999999999999999999998875421   11111122334567889999999999999999999999


Q ss_pred             hCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          396 CDCHN----VKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       396 ~~p~~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      ++|+|    ++.|+++|.++..+|+..+|+.+++.|+.|||.
T Consensus       278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s  319 (486)
T KOG0550|consen  278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS  319 (486)
T ss_pred             CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence            99987    577999999999999999999999999999985

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.57  E-value=9.8e-08  Score=91.48  Aligned_cols=103  Identities=19%  Similarity=0.208  Sum_probs=92.2

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ..+.+.||..|..|++++|...|++||.-+...               ..+++|+|+.+..+|+.++|+++|-+.-.+--
T Consensus       491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc---------------~ealfniglt~e~~~~ldeald~f~klh~il~  555 (840)
T KOG2003|consen  491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASC---------------TEALFNIGLTAEALGNLDEALDCFLKLHAILL  555 (840)
T ss_pred             HHhhcCCceeeecCcHHHHHHHHHHHHcCchHH---------------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH
Confidence            345668899999999999999999999865433               47799999999999999999999999877777


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +++..++.++.+|..+.+..+|+++|.++..+-|+++.
T Consensus       556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~  593 (840)
T KOG2003|consen  556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPA  593 (840)
T ss_pred             hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHH
Confidence            89999999999999999999999999999999999873

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.54  E-value=4.4e-07  Score=76.54  Aligned_cols=70  Identities=13%  Similarity=0.114  Sum_probs=66.5

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ....+.+|..++..|++++|...|+.+..+||.++..|+++|.|+..+|+|.+|+..|.+|+.++|+|+.
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~  104 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ  104 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence            3557889999999999999999999999999999999999999999999999999999999999999975

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.54  E-value=5.7e-07  Score=98.36  Aligned_cols=100  Identities=21%  Similarity=0.199  Sum_probs=74.8

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      .+...|..+...|++++|+..|++++...|.+               ..++.+++..+.+.++ .+|+..+++++++.|+
T Consensus       772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~  835 (899)
T TIGR02917       772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPDN---------------AVVLNNLAWLYLELKD-PRALEYAEKALKLAPN  835 (899)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence            44555666666777777777777776665543               2557777888888888 7788888888888888


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++..+..+|.++..+|++++|+..|+++++++|.++
T Consensus       836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~  871 (899)
T TIGR02917       836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAA  871 (899)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Confidence            888888888888888888888888888888888765

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.53  E-value=4.4e-07  Score=93.81  Aligned_cols=104  Identities=22%  Similarity=0.282  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      .....-+.+.+..+...|+|..|+.+|..+....+...              .-+|+++|.||..++.+++|+.+|.++|
T Consensus       411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~--------------~~vw~~~a~c~~~l~e~e~A~e~y~kvl  476 (895)
T KOG2076|consen  411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN--------------AFVWYKLARCYMELGEYEEAIEFYEKVL  476 (895)
T ss_pred             hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc--------------hhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            35677889999999999999999999999887654432              4679999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      .++|++..+...++.++..+|++++|++.+.+...-|+
T Consensus       477 ~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~  514 (895)
T KOG2076|consen  477 ILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDG  514 (895)
T ss_pred             hcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence            99999999999999999999999999999988764443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.53  E-value=2.5e-07  Score=84.97  Aligned_cols=65  Identities=28%  Similarity=0.347  Sum_probs=61.3

Q ss_pred             hhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      +-+-|.-+++.++|.+|+..|++||+++|+|+-.|.+||.+|.+||+|+.|+++++.|+.+||+.
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y  148 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY  148 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH
Confidence            33678888999999999999999999999999999999999999999999999999999999964

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=1.2e-06  Score=80.90  Aligned_cols=106  Identities=20%  Similarity=0.101  Sum_probs=92.3

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc---cCHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL---KDYQGAIELCSK  392 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~---~~~~~Ai~~~~~  392 (437)
                      ..++.+.-.|..|+..+++..|...|.+|+++.|+++               .++.-+|.+++.+   ..-.++...+++
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~---------------~~~~g~aeaL~~~a~~~~ta~a~~ll~~  218 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP---------------EILLGLAEALYYQAGQQMTAKARALLRQ  218 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            3355677789999999999999999999999998865               4566777766554   346789999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          393 VLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       393 al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +|.+||.|+.+++.+|..++..|+|.+|+..++..|.+.|.+..
T Consensus       219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            99999999999999999999999999999999999999997753

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.52  E-value=6.3e-07  Score=67.33  Aligned_cols=74  Identities=26%  Similarity=0.335  Sum_probs=61.4

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..+...|..++..|+|++|+..|++|+.+......        .....+.++.|+|.||..+|++++|+.+++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45778899999999999999999999999998533321        1233478899999999999999999999999998


Q ss_pred             hC
Q 013755          396 CD  397 (437)
Q Consensus       396 ~~  397 (437)
                      +.
T Consensus        75 i~   76 (78)
T PF13424_consen   75 IF   76 (78)
T ss_dssp             HH
T ss_pred             hh
Confidence            63

...

>PLN02789 farnesyltranstransferase

Probab=98.50  E-value=7.1e-07  Score=85.74  Aligned_cols=93  Identities=13%  Similarity=0.090  Sum_probs=85.1

Q ss_pred             HHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc-CHHHHHHHHHHHHHhCCCCHHHHHH
Q 013755          328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKVLDCDCHNVKALYR  406 (437)
Q Consensus       328 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~Ai~~~~~al~~~p~~~~a~~~  406 (437)
                      +...+++++|+..+.++|.++|.+.               .+|++++.++..++ ++++|+..++++++.+|++..+|+.
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~y---------------taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~  111 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNY---------------TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH  111 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhH---------------HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence            5667899999999999999998764               77999999999998 6899999999999999999999999


Q ss_pred             HHHHHHHhccH--HHHHHHHHHHHHhCCCCC
Q 013755          407 RAQAYMEIADL--ILAELDIKKAIEADPQNR  435 (437)
Q Consensus       407 ~g~~~~~lg~~--~~A~~~~~~al~l~P~n~  435 (437)
                      ++.++..+++.  ++++..++++++++|+|-
T Consensus       112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy  142 (320)
T PLN02789        112 RRWLAEKLGPDAANKELEFTRKILSLDAKNY  142 (320)
T ss_pred             HHHHHHHcCchhhHHHHHHHHHHHHhCcccH
Confidence            99999999974  788999999999999874

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.47  E-value=4.7e-07  Score=79.03  Aligned_cols=99  Identities=11%  Similarity=0.045  Sum_probs=80.9

Q ss_pred             HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC---
Q 013755          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN---  400 (437)
Q Consensus       324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---  400 (437)
                      ..+.+|-.+.|..+...+...++..+.             .....+++++|.++..+++|++|+..|++++.+.|+.   
T Consensus         5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~   71 (168)
T CHL00033          5 QRNDNFIDKTFTIVADILLRILPTTSG-------------EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR   71 (168)
T ss_pred             cccccccccccccchhhhhHhccCCch-------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh
Confidence            445667777777777777655543222             2246789999999999999999999999999997763   


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +.+++++|.+|..+|++++|+..|++++.++|.+.
T Consensus        72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~  106 (168)
T CHL00033         72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP  106 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence            45899999999999999999999999999998764

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.44  E-value=5.2e-06  Score=84.94  Aligned_cols=117  Identities=12%  Similarity=0.037  Sum_probs=90.8

Q ss_pred             HHHHHHHhhHHHhCCc---HHHHHHHHHHHHHhhccCCC--------------CC---hHHHHHHHh------------h
Q 013755          318 AGRKKEEGNLLFKNGK---YERAGKKYNKAADCVSEDGS--------------FV---DDEQKLVKS------------L  365 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~---~~~A~~~y~~al~~~~~~~~--------------~~---~~~~~~~~~------------~  365 (437)
                      +-.++.+|..++....   +.+|+.+|++|++++|+...              ..   ...+..+..            .
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~  418 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV  418 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence            3345667777766544   88999999999999887421              11   111111111            1


Q ss_pred             hHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       366 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ...+|.-+|..+...|++++|...+++|+.++| +..+|+.+|.++...|++++|++.|++|+.++|.++
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            124566778888889999999999999999999 588999999999999999999999999999999876

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.43  E-value=1.4e-06  Score=85.53  Aligned_cols=84  Identities=20%  Similarity=0.197  Sum_probs=76.9

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+..+|..++..|+|++|+..+++|+.+.|...               .+|+++|.+|+++|+|++|+.+|+++++++
T Consensus        36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~---------------~a~~~lg~~~~~lg~~~eA~~~~~~al~l~  100 (356)
T PLN03088         36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLA---------------KAYLRKGTACMKLEEYQTAKAALEKGASLA  100 (356)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH---------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            46778999999999999999999999999988653               679999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcc
Q 013755          398 CHNVKALYRRAQAYMEIAD  416 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~  416 (437)
                      |++..+...++.|...+.+
T Consensus       101 P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088        101 PGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             CCCHHHHHHHHHHHHHHHh
Confidence            9999999999999877744

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.42  E-value=1.1e-06  Score=66.97  Aligned_cols=67  Identities=37%  Similarity=0.474  Sum_probs=63.8

Q ss_pred             HhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          369 CWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       369 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +++++|.++..++++++|+..++++++..|.+..+++.+|.++...+++++|+..|++++.+.|.+.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   68 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA   68 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence            4789999999999999999999999999999999999999999999999999999999999998764

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.42  E-value=1.7e-06  Score=74.07  Aligned_cols=87  Identities=28%  Similarity=0.277  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc----------cCHHHHHHHHHHHHHhCCCCHHH
Q 013755          334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL----------KDYQGAIELCSKVLDCDCHNVKA  403 (437)
Q Consensus       334 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~----------~~~~~Ai~~~~~al~~~p~~~~a  403 (437)
                      |+.|.+.|+.....+|.+.               ..++|=|.+++.+          .-+++|+.-+++||.++|+...|
T Consensus         7 FE~ark~aea~y~~nP~Da---------------dnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA   71 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDA---------------DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA   71 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-H---------------HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHHHHHHhCcHhH---------------HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            6778888888888888763               3344444444433          44788999999999999999999


Q ss_pred             HHHHHHHHHHhcc-----------HHHHHHHHHHHHHhCCCCC
Q 013755          404 LYRRAQAYMEIAD-----------LILAELDIKKAIEADPQNR  435 (437)
Q Consensus       404 ~~~~g~~~~~lg~-----------~~~A~~~~~~al~l~P~n~  435 (437)
                      ++++|.+|..++.           |++|..+|++|..++|+|.
T Consensus        72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne  114 (186)
T PF06552_consen   72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE  114 (186)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence            9999999988876           8999999999999999984

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.39  E-value=1.8e-06  Score=78.00  Aligned_cols=100  Identities=13%  Similarity=0.116  Sum_probs=84.0

Q ss_pred             HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV  401 (437)
Q Consensus       322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~  401 (437)
                      ...++.++..|+-+.++....+++...+.+.               .++.-+|..++..|+|..|+..+.++..++|++.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~---------------~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~  134 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDR---------------ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW  134 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccH---------------HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh
Confidence            4466666777777777776666665555442               3345589999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          402 KALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ++|.-+|.+|.++|++++|...|.+++++.|+++.
T Consensus       135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~  169 (257)
T COG5010         135 EAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS  169 (257)
T ss_pred             hhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch
Confidence            99999999999999999999999999999999874

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.39  E-value=2.1e-06  Score=69.72  Aligned_cols=68  Identities=21%  Similarity=0.233  Sum_probs=63.7

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ..++++|..+.+++++++|+..|.+++..+|++   ..+++.+|.++...+++++|+..|++++..+|+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~   73 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP   73 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence            458899999999999999999999999999877   57999999999999999999999999999999874

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.39  E-value=2.1e-06  Score=92.14  Aligned_cols=119  Identities=10%  Similarity=0.022  Sum_probs=91.0

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC-C------------hHHHHHHHh------hhHHHhhhHHHHH
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-V------------DDEQKLVKS------LRVSCWLNSAACC  377 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-~------------~~~~~~~~~------~~~~~~~nla~~~  377 (437)
                      .+...+.++...++.|+|+.|+..|+++++..|..... .            ++....++.      .....+..+|.+|
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly  112 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY  112 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            45578899999999999999999999999999886311 0            011111111      1122333446788


Q ss_pred             HhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          378 LKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       378 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ..+|+|++|+..|+++++.+|+++.+++.++.++..+++.++|+..++++..++|.+.
T Consensus       113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~  170 (822)
T PRK14574        113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ  170 (822)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH
Confidence            8889999999999999999999999998888889999999999999999988888754

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.38  E-value=1.3e-06  Score=91.13  Aligned_cols=107  Identities=20%  Similarity=0.245  Sum_probs=90.5

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..+...++.+|-.|+|..+..++..|+.....            ..+.+..++++|.+|..+|+|++|..+|.+++..+
T Consensus       270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~  337 (1018)
T KOG2002|consen  270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTEN------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD  337 (1018)
T ss_pred             cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence            345556777888888888888888888776422            23456779999999999999999999999999999


Q ss_pred             CCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          398 CHN-VKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       398 p~~-~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      |++ .-+++.+|+.|...|+++.|+.+|++.++..|+|.+
T Consensus       338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e  377 (1018)
T KOG2002|consen  338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE  377 (1018)
T ss_pred             CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH
Confidence            998 888999999999999999999999999999999864

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.38  E-value=8.5e-07  Score=86.71  Aligned_cols=109  Identities=23%  Similarity=0.120  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc---cCHHHHHH
Q 013755          312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL---KDYQGAIE  388 (437)
Q Consensus       312 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~---~~~~~Ai~  388 (437)
                      -+..+.++..+.+||..|..+....|+..|.+++...|..               ..+|.|+|.++++.   ++.-.|+.
T Consensus       368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---------------~~~l~nraa~lmkRkW~~d~~~Alr  432 (758)
T KOG1310|consen  368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA---------------IYLLENRAAALMKRKWRGDSYLALR  432 (758)
T ss_pred             hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch---------------hHHHHhHHHHHHhhhccccHHHHHH
Confidence            4667889999999999999999999999999999988764               46789999998884   67889999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          389 LCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       389 ~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +|..|++++|...+|+|+++.++..++++.+|+++...+....|.+.
T Consensus       433 Dch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  433 DCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             hHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence            99999999999999999999999999999999999887777777553

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.37  E-value=5.7e-06  Score=81.12  Aligned_cols=118  Identities=12%  Similarity=-0.069  Sum_probs=93.7

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC-------------Ch--HHHHH-H------HhhhHHHhhhHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-------------VD--DEQKL-V------KSLRVSCWLNSAA  375 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~--~~~~~-~------~~~~~~~~~nla~  375 (437)
                      .+....+|..++..|++++|+..+++++...|.+...             ..  ..... +      ......++.++|.
T Consensus        43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~  122 (355)
T cd05804          43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF  122 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence            3445567889999999999999999999988765411             00  00001 1      1111235567888


Q ss_pred             HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       376 ~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++..+|++++|+..++++++++|+++.++..+|.++...|++++|+..+++++.+.|.++
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~  182 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS  182 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence            999999999999999999999999999999999999999999999999999999987543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.37  E-value=4.4e-06  Score=84.27  Aligned_cols=110  Identities=21%  Similarity=0.160  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      ...+..+.+.|..|.+.|+|++|..+|++|+++.......+       .......+.|++..+..++++++|+.++.+++
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~-------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al  352 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS-------HPEVAAQLSELAAILQSMNEYEEAKKLLQKAL  352 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC-------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            46678889999999999999999999999999976522221       22345778999999999999999999999999


Q ss_pred             HhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          395 DCD--------CHNVKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       395 ~~~--------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      ++-        +.-++.+.++|.+|+.+|+|++|.+.|++|+.+.
T Consensus       353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            762        2336889999999999999999999999999875

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.33  E-value=4.9e-06  Score=77.16  Aligned_cols=100  Identities=16%  Similarity=0.119  Sum_probs=91.5

Q ss_pred             HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV  401 (437)
Q Consensus       322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~  401 (437)
                      .+.|..|++.|-+.+|...++.+|...|.                ...+.-|+.+|.+..+...|+..+.+.|+..|.++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~----------------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V  290 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH----------------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV  290 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCc----------------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh
Confidence            46799999999999999999999988664                35578899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCCC
Q 013755          402 KALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH  437 (437)
Q Consensus       402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~  437 (437)
                      ..+..+|.++..++++++|++.|+.+++++|.|-++
T Consensus       291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEa  326 (478)
T KOG1129|consen  291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEA  326 (478)
T ss_pred             hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcccee
Confidence            999999999999999999999999999999998764

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.32  E-value=6.1e-06  Score=80.92  Aligned_cols=100  Identities=16%  Similarity=0.033  Sum_probs=87.5

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+...|..+...|++++|+..|++++...|.+.               .++..+|.++...|++++|+.++++++...
T Consensus       114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~---------------~~~~~la~i~~~~g~~~eA~~~l~~~l~~~  178 (355)
T cd05804         114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDA---------------WAVHAVAHVLEMQGRFKEGIAFMESWRDTW  178 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc---------------HHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence            44555778899999999999999999999988764               568899999999999999999999999998


Q ss_pred             CCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          398 CHNV----KALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       398 p~~~----~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      |.++    ..++.+|.++..+|++++|+..|++++...|
T Consensus       179 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         179 DCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             CCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            7443    3567899999999999999999999987666

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.30  E-value=7.1e-06  Score=80.08  Aligned_cols=104  Identities=16%  Similarity=0.090  Sum_probs=66.5

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      .....+..+..++..|+++.|...++..+...|+++               ..+.-++.++++.++..+|++.+++++.+
T Consensus       305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~---------------~~~~~~~~i~~~~nk~~~A~e~~~kal~l  369 (484)
T COG4783         305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP---------------YYLELAGDILLEANKAKEAIERLKKALAL  369 (484)
T ss_pred             chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            344556666667777777777777777666666543               23344556666666666666666666666


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +|+..-..+++|++|++.|++.+|+..++..+.-+|+|+
T Consensus       370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp  408 (484)
T COG4783         370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP  408 (484)
T ss_pred             CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence            666666666666666666666666666666666666665

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.28  E-value=4.9e-06  Score=81.42  Aligned_cols=73  Identities=16%  Similarity=0.206  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK  392 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~  392 (437)
                      .....+..+.+.|..|++.|+|++|+..|++||++.|++...            ..+|+|+|.||.++|++++|+.++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA------------~~A~yNLAcaya~LGr~dEAla~Lrr  137 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA------------QAAYYNKACCHAYREEGKKAADCLRT  137 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            344568889999999999999999999999999999876411            24699999999999999999999999


Q ss_pred             HHHhC
Q 013755          393 VLDCD  397 (437)
Q Consensus       393 al~~~  397 (437)
                      |+++.
T Consensus       138 ALels  142 (453)
T PLN03098        138 ALRDY  142 (453)
T ss_pred             HHHhc
Confidence            99983

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.27  E-value=4.5e-05  Score=64.71  Aligned_cols=113  Identities=18%  Similarity=0.092  Sum_probs=90.5

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC-------CChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHH
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-------FVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL  389 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~-------~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~  389 (437)
                      ....+...|......++...++..+++++.+.....-       .-......+......++..++..+...|++++|+..
T Consensus         5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~   84 (146)
T PF03704_consen    5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL   84 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            4556667788888899999999999999998654321       112344667778888899999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755          390 CSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE  429 (437)
Q Consensus       390 ~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~  429 (437)
                      |++++..+|.+..++..+-.+|..+|++.+|++.|+++..
T Consensus        85 ~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   85 LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.27  E-value=6.5e-06  Score=83.06  Aligned_cols=109  Identities=17%  Similarity=0.142  Sum_probs=87.9

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      .........|..|+.+|+|+.|+..|++|++.........       .........++|..|..+++|.+|+..|++||.
T Consensus       197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~-------hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~  269 (508)
T KOG1840|consen  197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLK-------HLVVASMLNILALVYRSLGKYDEAVNLYEEALT  269 (508)
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCcc-------CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3445556699999999999999999999999864332211       122234455799999999999999999999997


Q ss_pred             h--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          396 C--------DCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       396 ~--------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      +        +|.-+-++.++|.+|...|+|++|..++++|+++-
T Consensus       270 i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  270 IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY  313 (508)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence            6        34446789999999999999999999999999874

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.27  E-value=1.5e-06  Score=53.90  Aligned_cols=33  Identities=33%  Similarity=0.494  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          402 KALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      ++|+++|.+|..++++++|+.+|++|++++|+|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            566777777777777777777777777777653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.27  E-value=3.7e-06  Score=85.43  Aligned_cols=100  Identities=17%  Similarity=0.300  Sum_probs=89.9

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      +.+..|...+.+++|++|..+++..++++|-.               ...|+++|.|..++++++.|.++|.+++.++|+
T Consensus       487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq---------------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd  551 (777)
T KOG1128|consen  487 AQRSLALLILSNKDFSEADKHLERSLEINPLQ---------------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD  551 (777)
T ss_pred             HHHhhccccccchhHHHHHHHHHHHhhcCccc---------------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence            44555666778899999999999999998754               366999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      +..+|.+++.+|..+++-.+|...+++|++-+-+|
T Consensus       552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~  586 (777)
T KOG1128|consen  552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH  586 (777)
T ss_pred             chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence            99999999999999999999999999999887544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.26  E-value=4.8e-06  Score=72.92  Aligned_cols=70  Identities=16%  Similarity=0.158  Sum_probs=64.0

Q ss_pred             hHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       366 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ...+++++|.++...|++++|+.+|++++.+.|+.   ..+++++|.++..+|++++|+..|++++.+.|++.
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  106 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP  106 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence            45678999999999999999999999999987753   47899999999999999999999999999999764

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.20  E-value=5.2e-06  Score=76.97  Aligned_cols=106  Identities=15%  Similarity=0.135  Sum_probs=91.5

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      ..+.+.+.|..++..++|+-++..|++|+....+..            ..+.+|+|+|.+....|++.-|.++++-+|..
T Consensus       357 speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~  424 (478)
T KOG1129|consen  357 SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTS  424 (478)
T ss_pred             ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc------------hhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence            345677888889999999999999999998765432            24688999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      |+++..+|.++|..-...|+.++|...+..|-.+.|+-
T Consensus       425 d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m  462 (478)
T KOG1129|consen  425 DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM  462 (478)
T ss_pred             CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence            99999999999999999999999999999999888864

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=5.2e-06  Score=82.12  Aligned_cols=98  Identities=16%  Similarity=0.157  Sum_probs=80.2

Q ss_pred             HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC-----
Q 013755          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC-----  398 (437)
Q Consensus       324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-----  398 (437)
                      .|..|.+.+++..|.+.|.+|+.+.|.++               -++..+|.+.+..+.|.+|+.+++.+|+.-+     
T Consensus       386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dp---------------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e  450 (611)
T KOG1173|consen  386 LGMEYMRTNNLKLAEKFFKQALAIAPSDP---------------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE  450 (611)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCCcc---------------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc
Confidence            45556667777777777777777777765               4578899999999999999999999994321     


Q ss_pred             --CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          399 --HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       399 --~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                        .....+.++|.+|.+++.|++|+..|+++|.+.|.|.+
T Consensus       451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~  490 (611)
T KOG1173|consen  451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS  490 (611)
T ss_pred             ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence              23455899999999999999999999999999998864

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.20  E-value=5.7e-06  Score=78.51  Aligned_cols=102  Identities=18%  Similarity=0.143  Sum_probs=66.4

Q ss_pred             HHHhhHHHhCCcHH---HHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          322 KEEGNLLFKNGKYE---RAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       322 ~~~g~~~~~~g~~~---~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      .+....+....-+.   +-.....-.-+.....+..            ..+...++.++..+|+++++...+.......|
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~------------~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~  211 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD------------PDARNALAWLLIDMGDYDEAREALKRLLKAAP  211 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence            44444444444443   4445554444555555543            35566777778888888887777777777777


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .++..+..+|.+|..+|++++|+.+|+++++.+|+|+
T Consensus       212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~  248 (280)
T PF13429_consen  212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP  248 (280)
T ss_dssp             TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred             CHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence            7777778888888888888888888888888888775

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.19  E-value=1.5e-06  Score=53.84  Aligned_cols=34  Identities=21%  Similarity=0.194  Sum_probs=31.8

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Q 013755          389 LCSKVLDCDCHNVKALYRRAQAYMEIADLILAEL  422 (437)
Q Consensus       389 ~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~  422 (437)
                      +|++||+++|+|+.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4789999999999999999999999999999973

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.19  E-value=1.3e-05  Score=74.41  Aligned_cols=116  Identities=19%  Similarity=0.146  Sum_probs=83.1

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC---------ChHHHHH---------------HHhhhHHHhhhH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF---------VDDEQKL---------------VKSLRVSCWLNS  373 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~~~~~~---------------~~~~~~~~~~nl  373 (437)
                      ...+.+.|..|+..|-|+.|...|....+........         ...+|++               ..-..+..|+.|
T Consensus       107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCEL  186 (389)
T COG2956         107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCEL  186 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Confidence            4555666666777776666666666554421100000         0011111               122345678888


Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          374 AACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       374 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      |..+....++++|+....+|++.||+++.|-..+|.+++..|+|+.|++.++.+++.||+
T Consensus       187 Aq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~  246 (389)
T COG2956         187 AQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE  246 (389)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence            988989999999999999999999999999999999999999999999999999998875

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.18  E-value=1.6e-05  Score=77.73  Aligned_cols=96  Identities=24%  Similarity=0.154  Sum_probs=83.0

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  400 (437)
                      +-..+..+++.++..+|++.+++++...|+..               .+.+|+|.+|++.|++.+|+...+..+..+|++
T Consensus       343 ~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~---------------~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d  407 (484)
T COG4783         343 LELAGDILLEANKAKEAIERLKKALALDPNSP---------------LLQLNLAQALLKGGKPQEAIRILNRYLFNDPED  407 (484)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc---------------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence            34467889999999999999999999998764               668999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          401 VKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      +..|..+|++|..+|+-.+|...+-..+.+.
T Consensus       408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~~~  438 (484)
T COG4783         408 PNGWDLLAQAYAELGNRAEALLARAEGYALA  438 (484)
T ss_pred             chHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence            9999999999888888766666655555443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.17  E-value=1.2e-05  Score=84.02  Aligned_cols=109  Identities=18%  Similarity=0.099  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH
Q 013755          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (437)
Q Consensus       314 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  393 (437)
                      ....++.++..|..+...|+|++|...|.+++...++...              -.++-+|+.|++.|+++.|+.+|+++
T Consensus       303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~--------------l~~~GlgQm~i~~~dle~s~~~fEkv  368 (1018)
T KOG2002|consen  303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV--------------LPLVGLGQMYIKRGDLEESKFCFEKV  368 (1018)
T ss_pred             hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc--------------ccccchhHHHHHhchHHHHHHHHHHH
Confidence            3456778999999999999999999999999999887632              34788999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHhCCCCCC
Q 013755          394 LDCDCHNVKALYRRAQAYMEIA----DLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       394 l~~~p~~~~a~~~~g~~~~~lg----~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ++..|++...+.-+|..|...+    .-+.|...+.++++..|.|.+
T Consensus       369 ~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~  415 (1018)
T KOG2002|consen  369 LKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSE  415 (1018)
T ss_pred             HHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHH
Confidence            9999999999999999999886    678899999999999987754

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.17  E-value=1.3e-05  Score=78.66  Aligned_cols=95  Identities=18%  Similarity=0.165  Sum_probs=83.3

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  400 (437)
                      ..-.+..++..++-.+|++..+++|...|.+               ..++...|..+++.++++.|+..++++.++.|++
T Consensus       203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d---------------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~  267 (395)
T PF09295_consen  203 AVLLARVYLLMNEEVEAIRLLNEALKENPQD---------------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSE  267 (395)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            3446777888889999999999999887765               3667788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          401 VKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      .++|+.++.||..+|+|++|+..++.+--+
T Consensus       268 f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  268 FETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            999999999999999999999888765443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.16  E-value=5e-06  Score=51.39  Aligned_cols=34  Identities=35%  Similarity=0.448  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      +++++.+|.+++.+|+|++|+.+|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            3567778888888888888888888888887775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.12  E-value=1.8e-05  Score=85.10  Aligned_cols=102  Identities=5%  Similarity=-0.076  Sum_probs=86.0

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ..+...|..+...|+|++|+..|+++++..|.++               .++.-++..|..++++++|+..+++++..+|
T Consensus       103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~---------------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp  167 (822)
T PRK14574        103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTNP---------------DLISGMIMTQADAGRGGVVLKQATELAERDP  167 (822)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHhhcCCHHHHHHHHHHhcccCc
Confidence            3445567888999999999999999999998874               4566778999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      .+... ..++.++..++++.+|+..|+++++++|+|.+
T Consensus       168 ~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e  204 (822)
T PRK14574        168 TVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEE  204 (822)
T ss_pred             chHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence            86554 44566666678887799999999999999864

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=98.11  E-value=4e-05  Score=73.38  Aligned_cols=115  Identities=11%  Similarity=0.133  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC---ChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHH
Q 013755          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF---VDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC  390 (437)
Q Consensus       314 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~---~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~  390 (437)
                      .-++.......|..+|++++|..|+-.|..||++...-.-.   .......+..+..-+.-.|..||+++++.+.|+.+.
T Consensus       172 iDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~  251 (569)
T PF15015_consen  172 IDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHS  251 (569)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence            34566667788999999999999999999999987643211   112334455556667778999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 013755          391 SKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAI  428 (437)
Q Consensus       391 ~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al  428 (437)
                      .+.+.++|.++.-+.+.|.|+..+.+|.+|-..+--|.
T Consensus       252 hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  252 HRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             hhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999987665543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.11  E-value=2.6e-05  Score=74.10  Aligned_cols=111  Identities=24%  Similarity=0.347  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHhhHHHhC-CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKN-GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  393 (437)
                      ...+..+...|..|... +++++|+.+|++|+.+......         ......++.++|.++.++++|++|+..|+++
T Consensus       111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~  181 (282)
T PF14938_consen  111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---------PHSAAECLLKAADLYARLGRYEEAIEIYEEV  181 (282)
T ss_dssp             HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            35567778888888888 9999999999999999765431         2334578889999999999999999999999


Q ss_pred             HHhCCC------CH-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          394 LDCDCH------NV-KALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       394 l~~~p~------~~-~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      ....-+      ++ +.+++.+.|++.+|++..|...|++....+|.-
T Consensus       182 ~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  182 AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            875322      13 346788889999999999999999999998854

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.10  E-value=0.00011  Score=62.39  Aligned_cols=102  Identities=17%  Similarity=0.076  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK  392 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~  392 (437)
                      .+...+...+......+..+++..+...+.+.+.-.|...            ....+.+.+|.+++..|++++|+..+++
T Consensus         6 ~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~------------ya~~A~l~lA~~~~~~g~~~~A~~~l~~   73 (145)
T PF09976_consen    6 QQAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP------------YAALAALQLAKAAYEQGDYDEAKAALEK   73 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4556677888888888899999999999999888877652            2356788899999999999999999999


Q ss_pred             HHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHH
Q 013755          393 VLDCDCHN---VKALYRRAQAYMEIADLILAELDIKK  426 (437)
Q Consensus       393 al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~  426 (437)
                      ++...|+.   ..+.+++|.+++.+|+|++|+..++.
T Consensus        74 ~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   74 ALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            99987655   46899999999999999999999966

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.09  E-value=4.5e-06  Score=51.66  Aligned_cols=33  Identities=27%  Similarity=0.494  Sum_probs=30.1

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  400 (437)
                      .+|+++|.+|..+++|++|+.+|++||+++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            578999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.05  E-value=2.7e-05  Score=77.43  Aligned_cols=97  Identities=24%  Similarity=0.248  Sum_probs=90.9

Q ss_pred             HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV  401 (437)
Q Consensus       322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~  401 (437)
                      +.+|..+++.|+..+|+-+|+.|+..+|.+               +.+|..||.++...++-..||..+.++|+++|+|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~h---------------aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl  353 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQH---------------AEAWQKLGITQAENENEQNAISALRRCLELDPTNL  353 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHH---------------HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH
Confidence            568999999999999999999999998875               47899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          402 KALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      .|+..+|.+|...|.-.+|+..|++=+...|.
T Consensus       354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~  385 (579)
T KOG1125|consen  354 EALMALAVSYTNEGLQNQALKMLDKWIRNKPK  385 (579)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc
Confidence            99999999999999999999999998877764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.05  E-value=5.9e-05  Score=70.11  Aligned_cols=106  Identities=18%  Similarity=0.141  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH
Q 013755          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (437)
Q Consensus       314 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  393 (437)
                      +++.++.+-+.+..+....++++|+..+.+|+..+|.+.               .+-.-+|.+++..|+|++|++.++.+
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv---------------RAsi~lG~v~~~~g~y~~AV~~~e~v  240 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV---------------RASIILGRVELAKGDYQKAVEALERV  240 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce---------------ehhhhhhHHHHhccchHHHHHHHHHH
Confidence            456777888889999999999999999999999988764               44668999999999999999999999


Q ss_pred             HHhCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          394 LDCDCHN-VKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       394 l~~~p~~-~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      ++.||.. +.++-.+..||..+|+.++.+..+.++.+..++.
T Consensus       241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~  282 (389)
T COG2956         241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA  282 (389)
T ss_pred             HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence            9999987 5788899999999999999999999999887653

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.05  E-value=3.9e-05  Score=72.82  Aligned_cols=107  Identities=25%  Similarity=0.262  Sum_probs=75.7

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc-cCHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL-KDYQGAIELCSKVL  394 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-~~~~~Ai~~~~~al  394 (437)
                      ..+..+.+.++. ++..++++|+.+|++|+.+......+         ...+.++.++|.+|... +++++|+.+|++|+
T Consensus        73 ~Aa~~~~~Aa~~-~k~~~~~~Ai~~~~~A~~~y~~~G~~---------~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~  142 (282)
T PF14938_consen   73 EAAKAYEEAANC-YKKGDPDEAIECYEKAIEIYREAGRF---------SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAA  142 (282)
T ss_dssp             HHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHCT-H---------HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            334444443333 44447777777777777776443322         33467889999999998 99999999999999


Q ss_pred             HhCC--CC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          395 DCDC--HN----VKALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       395 ~~~p--~~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      ++..  +.    ...+.+.|.++..+++|++|+..|+++....-
T Consensus       143 ~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l  186 (282)
T PF14938_consen  143 ELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL  186 (282)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred             HHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence            8732  12    36678999999999999999999999987543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.03  E-value=9.4e-06  Score=77.43  Aligned_cols=110  Identities=15%  Similarity=0.196  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK  392 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~  392 (437)
                      ++..+...+-+.||.||-.|+|+.|+...+.-|.+.....+         +.-...++.|+|.||.-+|+|+.|+++|.+
T Consensus       190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~  260 (639)
T KOG1130|consen  190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---------RAAERRAHSNLGNCHIFLGNFELAIEHYKL  260 (639)
T ss_pred             hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---------HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence            44555666777889999999999999998888887654321         111236788999999999999999999998


Q ss_pred             HHHhC----CC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          393 VLDCD----CH--NVKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       393 al~~~----p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      ++.+.    ..  .+...|.+|.+|.-+.++++|+.++.+-|.+.
T Consensus       261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            76542    12  24567888999999999999999888877664

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=6.2e-05  Score=67.72  Aligned_cols=116  Identities=21%  Similarity=0.206  Sum_probs=91.6

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCCh-------------HHHHHHHhh------hHHHhhhHHHHHHh
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD-------------DEQKLVKSL------RVSCWLNSAACCLK  379 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-------------~~~~~~~~~------~~~~~~nla~~~~~  379 (437)
                      ...+-.|..+-..|.|++|++.|...|.-+|.+..+..             +..+.+.++      -..+|..+|..|+.
T Consensus        87 RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~  166 (289)
T KOG3060|consen   87 RVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS  166 (289)
T ss_pred             hHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            34456777888889999999999998887776542211             111222211      14678999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCC
Q 013755          380 LKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIA---DLILAELDIKKAIEADPQN  434 (437)
Q Consensus       380 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg---~~~~A~~~~~~al~l~P~n  434 (437)
                      +++|++|.-++++++-+.|.++-.+-|+|..++-+|   +++-|+++|.++++++|.|
T Consensus       167 ~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~  224 (289)
T KOG3060|consen  167 EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN  224 (289)
T ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence            999999999999999999999999999999998877   5778999999999999954

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.01  E-value=2.7e-05  Score=83.27  Aligned_cols=112  Identities=14%  Similarity=0.003  Sum_probs=84.3

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCC--------------------------h-HHHHHHHhhhH---
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV--------------------------D-DEQKLVKSLRV---  367 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--------------------------~-~~~~~~~~~~~---  367 (437)
                      ...+......+...+++++|+..+..++...|+...+-                          . ..+ .+-+...   
T Consensus        31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i  109 (906)
T PRK14720         31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKI  109 (906)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHH
Confidence            44555566666677777777777777777665533210                          0 001 1111111   


Q ss_pred             -------HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          368 -------SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       368 -------~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                             .+++.||.||-++|++++|...|+++|+++|+|+.++.++|..|... ++++|+.++++|+...
T Consensus       110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence                   57888999999999999999999999999999999999999999999 9999999999998763

>PRK11906 transcriptional regulator; Provisional

Probab=98.01  E-value=4.7e-05  Score=74.75  Aligned_cols=88  Identities=18%  Similarity=0.123  Sum_probs=50.5

Q ss_pred             cHHHHHHHHHHHH---HhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc---------cCHHHHHHHHHHHHHhCCCC
Q 013755          333 KYERAGKKYNKAA---DCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL---------KDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       333 ~~~~A~~~y~~al---~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~---------~~~~~Ai~~~~~al~~~p~~  400 (437)
                      ..+.|+.+|.+|+   .++|..               +.+|.-+|.||+..         ..-.+|+...++|++++|.+
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~---------------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D  337 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLK---------------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD  337 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCccc---------------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            3467788888888   444432               34455555554442         12344555555666666666


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +.|++.+|.++...++++.|...|++|+.++|+.+
T Consensus       338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A  372 (458)
T PRK11906        338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIA  372 (458)
T ss_pred             HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccH
Confidence            66666666666656666666666666666666543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.00  E-value=1.4e-05  Score=52.79  Aligned_cols=43  Identities=26%  Similarity=0.254  Sum_probs=39.0

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQA  410 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~  410 (437)
                      .+++.+|.+|..+|++++|++.|+++++.+|+|+.+++.+|.+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            3578999999999999999999999999999999999988863

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=7.2e-05  Score=67.31  Aligned_cols=56  Identities=20%  Similarity=0.160  Sum_probs=43.9

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          380 LKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       380 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +|+--+||+....-|+..+++..||..++.+|+.+|+|++|.-+|++++-+.|-|+
T Consensus       133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~  188 (289)
T KOG3060|consen  133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP  188 (289)
T ss_pred             cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence            44445555555555555666668899999999999999999999999999999875

>TIGR00540 hemY_coli hemY protein

Probab=97.99  E-value=4.8e-05  Score=76.31  Aligned_cols=115  Identities=10%  Similarity=-0.006  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC-----------ChH----------HHHHHHhhhH--HHhh
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-----------VDD----------EQKLVKSLRV--SCWL  371 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-----------~~~----------~~~~~~~~~~--~~~~  371 (437)
                      .+........|..+...|++++|+..++++++..|++...           ..+          .+.+......  .++.
T Consensus       260 ~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~  339 (409)
T TIGR00540       260 RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR  339 (409)
T ss_pred             hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence            3456777888999999999999999999999988876521           110          1112222333  5566


Q ss_pred             hHHHHHHhccCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          372 NSAACCLKLKDYQGAIELCS--KVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       372 nla~~~~~~~~~~~Ai~~~~--~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      .+|..++++|+|++|.++++  ++++.+|++.. +..+|.++..+|+.++|.+.+++++.+
T Consensus       340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            78888888888888888888  57778886655 558888888888888888888888754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK11906 transcriptional regulator; Provisional

Probab=97.98  E-value=3.8e-05  Score=75.42  Aligned_cols=88  Identities=14%  Similarity=0.047  Sum_probs=80.6

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013755          332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAY  411 (437)
Q Consensus       332 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~  411 (437)
                      ..-.+|.++-.+|+++++.++               .++..+|.++...++++.|+..+++|+.++|+.+.++|..|..+
T Consensus       318 ~~~~~a~~~A~rAveld~~Da---------------~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~  382 (458)
T PRK11906        318 LAAQKALELLDYVSDITTVDG---------------KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH  382 (458)
T ss_pred             HHHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence            345778888899999988775               67889999999999999999999999999999999999999999


Q ss_pred             HHhccHHHHHHHHHHHHHhCCCC
Q 013755          412 MEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       412 ~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      ...|+.++|++.+++|++++|.-
T Consensus       383 ~~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        383 FHNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             HHcCCHHHHHHHHHHHhccCchh
Confidence            99999999999999999999964

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.98  E-value=4.1e-05  Score=81.87  Aligned_cols=57  Identities=12%  Similarity=0.008  Sum_probs=48.3

Q ss_pred             hhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          364 SLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       364 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .-.+.+++|+|..|... ++++|+.++.+|+..              +...++|.++.....+.+..+|.+-
T Consensus       147 ~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~  203 (906)
T PRK14720        147 RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDF  203 (906)
T ss_pred             cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccc
Confidence            34467889999999999 999999999999887              6777789999999999998888764

>TIGR00540 hemY_coli hemY protein

Probab=97.89  E-value=0.00021  Score=71.67  Aligned_cols=120  Identities=19%  Similarity=0.160  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC------------ChHHH----HHHHhh----hHHHhhh
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF------------VDDEQ----KLVKSL----RVSCWLN  372 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~~~~~----~~~~~~----~~~~~~n  372 (437)
                      .+...+.....+|...+..|+|+.|.+...++.+..|.....            +.+..    ....+.    ...+...
T Consensus        79 r~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~  158 (409)
T TIGR00540        79 RKRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIA  158 (409)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHH
Confidence            455677788889999999999999999999988876542100            00000    010000    0112333


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          373 SAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       373 la~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      ++..++..+++++|+..+++.++..|+++.++..++.++...|+|++|++.+.+.++...
T Consensus       159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~  218 (409)
T TIGR00540       159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL  218 (409)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence            477777788888888888888888888888888888888888888888888888776643

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.87  E-value=2.8e-05  Score=47.93  Aligned_cols=33  Identities=30%  Similarity=0.521  Sum_probs=30.1

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  400 (437)
                      .+++++|.+|+++|+|++|+.+|+++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            468899999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.87  E-value=0.00084  Score=53.30  Aligned_cols=108  Identities=17%  Similarity=0.195  Sum_probs=80.0

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh---
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC---  396 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~---  396 (437)
                      .....|...+..|-|++|...|++|+......+.   ++.-.-.-+-.-||--|+.++..+|+|++++...+++|..   
T Consensus        11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~---eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen   11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPA---EEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-T---TS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCh---HhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence            3445677788899999999999999998654332   1111222334567888999999999999999999999864   


Q ss_pred             ----CCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          397 ----DCHN----VKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       397 ----~p~~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                          +.+.    ..+.|++|.++..+|+.++|+..|+++-++
T Consensus        88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                3332    467799999999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.87  E-value=0.00013  Score=72.82  Aligned_cols=60  Identities=15%  Similarity=0.050  Sum_probs=43.3

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          373 SAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       373 la~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      .+..+...|++++|+..++++++.+|+++.++..++.+|...|+|++|++.+.+..+..+
T Consensus       159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~  218 (398)
T PRK10747        159 RVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV  218 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence            366777777777777777777777777777777777777777777777766666665544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.87  E-value=5.1e-05  Score=61.30  Aligned_cols=61  Identities=30%  Similarity=0.188  Sum_probs=57.3

Q ss_pred             hHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          372 NSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       372 nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      .-|.+....|+.+.|++.|.++|.+.|.++.+|.++++++...|+-++|++++++|+++.-
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag  108 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG  108 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC
Confidence            4577788899999999999999999999999999999999999999999999999999854

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.87  E-value=9.5e-05  Score=60.22  Aligned_cols=67  Identities=19%  Similarity=0.138  Sum_probs=60.7

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      .+++++|.++-.+|+.++|+..|++++......   ..++..+|.+|..+|++++|+..+++++.-.|++
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~   71 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD   71 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence            458899999999999999999999999975443   6899999999999999999999999999988873

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.86  E-value=0.00035  Score=63.50  Aligned_cols=107  Identities=20%  Similarity=0.166  Sum_probs=91.4

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      -+..+++.|...++.|+|.+|++.|+......|..+-.            -.+.+.++.++++.++|++|+...++-+.+
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~------------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l  100 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS------------EQAQLDLAYAYYKNGEYDLALAYIDRFIRL  100 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            37789999999999999999999999999887776432            366789999999999999999999999999


Q ss_pred             CCCCH---HHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhCCCCC
Q 013755          397 DCHNV---KALYRRAQAYMEIAD--------LILAELDIKKAIEADPQNR  435 (437)
Q Consensus       397 ~p~~~---~a~~~~g~~~~~lg~--------~~~A~~~~~~al~l~P~n~  435 (437)
                      .|+++   -++|.+|.+++..=+        -.+|...|+..+.--|+.+
T Consensus       101 yP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105         101 YPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             CCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence            99875   568999999775532        4678899999999999875

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.86  E-value=8e-05  Score=69.55  Aligned_cols=69  Identities=13%  Similarity=-0.001  Sum_probs=62.5

Q ss_pred             HHhhhHHHHH-HhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          368 SCWLNSAACC-LKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       368 ~~~~nla~~~-~~~~~~~~Ai~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ...++.|..+ ++.++|++|+..|++.+...|++   +.++|.+|.+|+.+|+|++|+..|+++++..|+++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~  215 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK  215 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence            4567888876 66799999999999999999998   589999999999999999999999999999998753

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.83  E-value=0.00013  Score=72.87  Aligned_cols=114  Identities=10%  Similarity=-0.044  Sum_probs=86.5

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC----------CC-h------HHHHHHHhhhHHHhhhHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS----------FV-D------DEQKLVKSLRVSCWLNSAACCL  378 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~----------~~-~------~~~~~~~~~~~~~~~nla~~~~  378 (437)
                      +........|..+...|+.++|....+++++..++ +.          -+ .      +.+.+.......+++.+|..+.
T Consensus       261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~  339 (398)
T PRK10747        261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-ERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM  339 (398)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            44556677888999999999999999999984332 21          01 0      1122333333567888899999


Q ss_pred             hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          379 KLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       379 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      +.++|.+|..+++++++.+|++ ..+..++.++.++|+.++|.++|+++|.+.
T Consensus       340 ~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        340 KHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            9999999999999999999875 446679999999999999999999998764

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.81  E-value=2.2e-05  Score=73.32  Aligned_cols=62  Identities=27%  Similarity=0.280  Sum_probs=59.1

Q ss_pred             hhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          371 LNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       371 ~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      -..|..|+++|+|++||++|.+++..+|.|+-.+.+||.+|+++..|..|..++..|+.|+-
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~  162 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK  162 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence            46789999999999999999999999999999999999999999999999999999999874

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.78  E-value=0.0001  Score=75.30  Aligned_cols=122  Identities=12%  Similarity=0.075  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC---------CC----hHHHHHHHhhhHHHhhhHHHHHHhcc
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS---------FV----DDEQKLVKSLRVSCWLNSAACCLKLK  381 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~---------~~----~~~~~~~~~~~~~~~~nla~~~~~~~  381 (437)
                      .++...+-.....|...|+..+|...-.+-++. +.++.         .+    +..++-.......+...+|......+
T Consensus       421 ~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek-~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~  499 (777)
T KOG1128|consen  421 FERLEMWDPVILCYLLLGQHGKAEEINRQELEK-DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNK  499 (777)
T ss_pred             HHhHHHHHHHHHHHHHhcccchHHHHHHHHhcC-CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccch
Confidence            344555555666677788888888877777762 22221         11    12223333333444455555566679


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCCC
Q 013755          382 DYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH  437 (437)
Q Consensus       382 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~  437 (437)
                      +|.+|.++++..++++|-....||++|.|..++++++.|..+|.+++.++|+|.++
T Consensus       500 ~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ea  555 (777)
T KOG1128|consen  500 DFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEA  555 (777)
T ss_pred             hHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhh
Confidence            99999999999999999999999999999999999999999999999999999764

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.77  E-value=0.00014  Score=67.24  Aligned_cols=70  Identities=23%  Similarity=0.168  Sum_probs=64.2

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV---KALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~---~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ...++..|..+++.|+|++|+..|++++...|...   .+.+.+|.+|+++++|++|+..|++.+++.|+++.
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~  104 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN  104 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence            34577899999999999999999999999999886   44699999999999999999999999999999986

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.76  E-value=4.8e-05  Score=46.93  Aligned_cols=33  Identities=30%  Similarity=0.427  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          402 KALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      ++|+.+|.+|..+|++++|+..|+++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            467777777777777777777777777777743

...

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=0.0002  Score=68.67  Aligned_cols=117  Identities=18%  Similarity=0.219  Sum_probs=90.7

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHH---------HHHHHhhhH----------HHhhhHHHHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDE---------QKLVKSLRV----------SCWLNSAACCL  378 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~---------~~~~~~~~~----------~~~~nla~~~~  378 (437)
                      ...+-..|..+|..|++.+|+-.|+++..++|+....-+..         .+....+..          .-|+--+...+
T Consensus       232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~  311 (564)
T KOG1174|consen  232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY  311 (564)
T ss_pred             HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence            45567789999999999999999999999888754321110         011111111          11233344566


Q ss_pred             hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          379 KLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       379 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      ..++|..|+.+.+|++..+|++..+|...|.++..+++.++|+-.|+.|..+.|..
T Consensus       312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r  367 (564)
T KOG1174|consen  312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR  367 (564)
T ss_pred             hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh
Confidence            78999999999999999999999999999999999999999999999999998854

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.74  E-value=0.00038  Score=62.67  Aligned_cols=106  Identities=16%  Similarity=0.090  Sum_probs=83.2

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc-----------CHHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-----------DYQGA  386 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-----------~~~~A  386 (437)
                      .......|..+|+.++|..|+..|++.++..|..+..            ..+++.+|.|++++.           ...+|
T Consensus        42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A  109 (203)
T PF13525_consen   42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKA  109 (203)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------------hhHHHHHHHHHHHhCccchhcccChHHHHHH
Confidence            4566788999999999999999999999999987632            466777888766643           35689


Q ss_pred             HHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          387 IELCSKVLDCDCHNVKA-----------------LYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       387 i~~~~~al~~~p~~~~a-----------------~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +..|+..+...|++..+                 -+..|.-|++.|.|..|+.-++.+++.-|+.+
T Consensus       110 ~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~  175 (203)
T PF13525_consen  110 IEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP  175 (203)
T ss_dssp             HHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred             HHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence            99999999999988522                 36678889999999999999999999988753

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.73  E-value=0.0003  Score=58.45  Aligned_cols=70  Identities=20%  Similarity=0.116  Sum_probs=64.7

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH  437 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~  437 (437)
                      ..+++.|...++.|+|.+|++.++.+....|-.   ..|.+.++.+|++.++|++|+..+++-++|.|+++.+
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            458899999999999999999999999998865   5889999999999999999999999999999999863

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.71  E-value=8.2e-05  Score=56.64  Aligned_cols=61  Identities=26%  Similarity=0.295  Sum_probs=49.5

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  393 (437)
                      ....+...|..+|+.|+|++|+..+++ +...+..               ..+++-+|.|++++|+|++|+..++++
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~---------------~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN---------------PDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH---------------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            344666789999999999999999999 6665532               355667799999999999999999875

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.71  E-value=0.00024  Score=68.10  Aligned_cols=110  Identities=15%  Similarity=0.165  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK  392 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~  392 (437)
                      ++...-.++-+.||.+.-.|+|+.|+++|++++.+.-....         +...+...+.||.+|.-+.+|++||.|..+
T Consensus       230 DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~---------r~vEAQscYSLgNtytll~e~~kAI~Yh~r  300 (639)
T KOG1130|consen  230 DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN---------RTVEAQSCYSLGNTYTLLKEVQKAITYHQR  300 (639)
T ss_pred             hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc---------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            34445556778999999999999999999999987643321         123345678899999999999999999998


Q ss_pred             HHHhC------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          393 VLDCD------CHNVKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       393 al~~~------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      -|.+.      -....+++.+|.+|-.+|+.++|+.+.++.+++.
T Consensus       301 HLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  301 HLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            77653      2346899999999999999999999998888763

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.0003  Score=65.25  Aligned_cols=89  Identities=18%  Similarity=0.119  Sum_probs=76.6

Q ss_pred             cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 013755          333 KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYM  412 (437)
Q Consensus       333 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~  412 (437)
                      ..+.-+...+.-|..+|++.               .-|.-||.+|+.++++..|...|.+|+++.|+|+..+..+|.+++
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~---------------egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~  201 (287)
T COG4235         137 EMEALIARLETHLQQNPGDA---------------EGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALY  201 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCc---------------hhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            35556666777788888775               348899999999999999999999999999999999999999987


Q ss_pred             Hhc---cHHHHHHHHHHHHHhCCCCCC
Q 013755          413 EIA---DLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       413 ~lg---~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ...   .-.+|...|++++.+||+|..
T Consensus       202 ~~a~~~~ta~a~~ll~~al~~D~~~ir  228 (287)
T COG4235         202 YQAGQQMTAKARALLRQALALDPANIR  228 (287)
T ss_pred             HhcCCcccHHHHHHHHHHHhcCCccHH
Confidence            664   367899999999999999853

>PRK15331 chaperone protein SicA; Provisional

Probab=97.69  E-value=0.00027  Score=60.12  Aligned_cols=70  Identities=10%  Similarity=-0.160  Sum_probs=65.2

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ....+..|.-++..|++++|...|.-..-++|.|++.++.+|.|+..+++|++|+..|-.|..++++|+-
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~  106 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR  106 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence            4556788889999999999999999999999999999999999999999999999999999999998863

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.68  E-value=0.00055  Score=58.92  Aligned_cols=101  Identities=16%  Similarity=0.177  Sum_probs=85.9

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ......|+.+...|+|.+|..+|++++.-.=.+ +             ...++.+|.+.+..+++..|....++..+.+|
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~-d-------------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p  155 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAH-D-------------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP  155 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC-C-------------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence            445678999999999999999999999743111 1             25678899999999999999999999999988


Q ss_pred             C--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          399 H--NVKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       399 ~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      .  .+......|.+|..+|.+.+|...|+.++...|+
T Consensus       156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg  192 (251)
T COG4700         156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG  192 (251)
T ss_pred             ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence            4  4778888999999999999999999999988775

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.67  E-value=0.00029  Score=71.94  Aligned_cols=70  Identities=23%  Similarity=0.172  Sum_probs=66.5

Q ss_pred             hHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       366 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ...+++.+|++|...|++++|+.+.++||+..|..+..|+.+|.+|...|++.+|.+.++.|-.+|+.|+
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR  262 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR  262 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence            4567899999999999999999999999999999999999999999999999999999999999998774

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR00115 tig trigger factor

Probab=97.67  E-value=0.00072  Score=67.78  Aligned_cols=72  Identities=17%  Similarity=0.252  Sum_probs=57.3

Q ss_pred             CccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755          222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (437)
Q Consensus       222 ~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~  301 (437)
                      +|..|+++   ...++.|.+|.+.+++||+.+|.+|++|+...|.++....|+..+        -.|.++.|.|+|..+.
T Consensus       162 dg~~~~~~---~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~--------~~gk~~~f~v~i~~I~  230 (408)
T TIGR00115       162 DGEAFEGG---KAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEE--------LAGKEATFKVTVKEVK  230 (408)
T ss_pred             CCEECcCC---CCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCccc--------CCCCeEEEEEEEEEec
Confidence            45555543   357899999999999999999999999999999998665665322        2577899999999998


Q ss_pred             ccc
Q 013755          302 KEK  304 (437)
Q Consensus       302 ~~~  304 (437)
                      ...
T Consensus       231 ~~~  233 (408)
T TIGR00115       231 EKE  233 (408)
T ss_pred             cCC
Confidence            653

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.66  E-value=0.0002  Score=72.21  Aligned_cols=101  Identities=13%  Similarity=-0.006  Sum_probs=55.1

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ..++.++...|..++|.+.+...++.|+-.|...+               .+.-.|..+..+|+-++|..++..++..|+
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge---------------slAmkGL~L~~lg~~~ea~~~vr~glr~d~   72 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE---------------SLAMKGLTLNCLGKKEEAYELVRLGLRNDL   72 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch---------------hHHhccchhhcccchHHHHHHHHHHhccCc
Confidence            34566777788888888888888888887665542               122333444444444444444444444444


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      .+.-.|.-+|..+..-.+|++|+.+|+.||.++|+|
T Consensus        73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN  108 (700)
T KOG1156|consen   73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN  108 (700)
T ss_pred             ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc
Confidence            444444444444444444444444444444444444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.64  E-value=0.00025  Score=72.92  Aligned_cols=103  Identities=18%  Similarity=0.119  Sum_probs=89.4

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      .+...+..+.+.+.-++|..+..+|-.+.+..               ...|+.+|.++...|++.+|.+.|..|+.+||+
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~---------------~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~  716 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLS---------------ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD  716 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcchhh---------------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence            34455666666777788888999988887653               477999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHH--HHHHHHHhCCCCCCC
Q 013755          400 NVKALYRRAQAYMEIADLILAEL--DIKKAIEADPQNRNH  437 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg~~~~A~~--~~~~al~l~P~n~~~  437 (437)
                      ++....-+|.++...|+-.-|..  .+..|+++||.|+++
T Consensus       717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ea  756 (799)
T KOG4162|consen  717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEA  756 (799)
T ss_pred             CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHH
Confidence            99999999999999998888877  999999999999864

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.60  E-value=6.7e-05  Score=49.43  Aligned_cols=36  Identities=25%  Similarity=0.300  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +.+++.+|.+|..+|++++|++.|+++++.+|+|++
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~   36 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPE   36 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            367899999999999999999999999999999975

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.60  E-value=0.00036  Score=60.73  Aligned_cols=74  Identities=23%  Similarity=0.195  Sum_probs=65.8

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      .+...+-++|..+++.++++.|+..+.+||.+.|...               .++..+|.+|.++.+|+.|+.+|.++++
T Consensus       132 ~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~---------------kAl~RRAeayek~ek~eealeDyKki~E  196 (271)
T KOG4234|consen  132 ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE---------------KALERRAEAYEKMEKYEEALEDYKKILE  196 (271)
T ss_pred             HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH---------------HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            4566788899999999999999999999999988643               6677899999999999999999999999


Q ss_pred             hCCCCHHHH
Q 013755          396 CDCHNVKAL  404 (437)
Q Consensus       396 ~~p~~~~a~  404 (437)
                      .+|.+-.|-
T Consensus       197 ~dPs~~ear  205 (271)
T KOG4234|consen  197 SDPSRREAR  205 (271)
T ss_pred             hCcchHHHH
Confidence            999887553

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.59  E-value=0.00016  Score=68.63  Aligned_cols=68  Identities=21%  Similarity=0.255  Sum_probs=54.3

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhCCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADL-ILAELDIKKAIEADPQNR  435 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~-~~A~~~~~~al~l~P~n~  435 (437)
                      .+++.+|.|++.+|+|++|...+.++++.+|+++.++.++..+...+|+. +.+.+.+.+....+|+++
T Consensus       202 ~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~  270 (290)
T PF04733_consen  202 KLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP  270 (290)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence            55777889999999999999999999999999999999999988888888 556677777777787764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.55  E-value=0.00053  Score=66.44  Aligned_cols=120  Identities=14%  Similarity=-0.006  Sum_probs=86.1

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCC-------hHHHHHHHh------------hhHHHhhhHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV-------DDEQKLVKS------------LRVSCWLNSAAC  376 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-------~~~~~~~~~------------~~~~~~~nla~~  376 (437)
                      ..++.+.+.++.|-...+..+|++.|.++..+.|+++..-       +.+-...+.            -.+...-.||.-
T Consensus       556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ay  635 (840)
T KOG2003|consen  556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAY  635 (840)
T ss_pred             hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHH
Confidence            3455667777777778888888888888888877765210       000000000            011222356667


Q ss_pred             HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       377 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |....=|++|+.++++|--+.|+..+.....+.|+...|+|++|.+.|+..-.--|.|-
T Consensus       636 yidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl  694 (840)
T KOG2003|consen  636 YIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL  694 (840)
T ss_pred             HHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence            77777889999999999999999889888899999999999999999999888888764

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.54  E-value=0.00022  Score=62.83  Aligned_cols=72  Identities=13%  Similarity=-0.022  Sum_probs=67.6

Q ss_pred             hhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          364 SLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       364 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +.++.+++.+|..|-.+|-+.-|.-++.++|.+.|+.+.++..+|.-+...|+|+.|.+.|+..+++||.+.
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~  133 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  133 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence            346788899999999999999999999999999999999999999999999999999999999999999864

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.54  E-value=0.00019  Score=74.20  Aligned_cols=116  Identities=31%  Similarity=0.421  Sum_probs=103.2

Q ss_pred             ChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh--ccCHHHHH
Q 013755          310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK--LKDYQGAI  387 (437)
Q Consensus       310 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--~~~~~~Ai  387 (437)
                      .....+.++..++.+||.+|..++|..|.-.|..++.+.|.+..           ....++.|.+.||++  +++|..++
T Consensus        45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~-----------~~a~~~~~~~s~~m~~~l~~~~~~~  113 (748)
T KOG4151|consen   45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH-----------VVATLRSNQASCYMQLGLGEYPKAI  113 (748)
T ss_pred             chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccch-----------hhhhHHHHHHHHHhhcCccchhhhc
Confidence            45677888999999999999999999999999999999986432           235678899988876  57899999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          388 ELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       388 ~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ..|+-|+...|...+++++++.+|..++.++-|++++.-....+|++.+
T Consensus       114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~  162 (748)
T KOG4151|consen  114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVS  162 (748)
T ss_pred             CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence            9999999999999999999999999999999999999999999999854

>PRK10941 hypothetical protein; Provisional

Probab=97.53  E-value=0.00044  Score=64.53  Aligned_cols=74  Identities=15%  Similarity=0.109  Sum_probs=68.2

Q ss_pred             hhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCCC
Q 013755          364 SLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH  437 (437)
Q Consensus       364 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~  437 (437)
                      ++....+.|+=.+|.+.++|+.|+.+++..|.++|+++.-+--+|.+|.++|.+..|+.+++..++..|+++++
T Consensus       178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a  251 (269)
T PRK10941        178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS  251 (269)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence            34556678999999999999999999999999999999988889999999999999999999999999998753

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=8.3e-05  Score=66.31  Aligned_cols=63  Identities=21%  Similarity=0.284  Sum_probs=59.2

Q ss_pred             hHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          372 NSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       372 nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      .-|.+++.-.+|..|+.+|.+||.++|..+..|-+++.||+++++|+.+..++++|++++|+.
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~   77 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL   77 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH
Confidence            456778888999999999999999999999999999999999999999999999999999975

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.52  E-value=0.00031  Score=66.74  Aligned_cols=96  Identities=20%  Similarity=0.194  Sum_probs=71.0

Q ss_pred             HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh--cc--CHHHHHHHHHHHHHhCCC
Q 013755          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK--LK--DYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--~~--~~~~Ai~~~~~al~~~p~  399 (437)
                      .-..+++.++++.|.+.++.+-+..++                 .+..+++.++..  .|  ++.+|.-.|++..+..+.
T Consensus       137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD-----------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~  199 (290)
T PF04733_consen  137 AVQILLKMNRPDLAEKELKNMQQIDED-----------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS  199 (290)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHCCSCC-----------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCc-----------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC
Confidence            444667788888888777776554322                 335555554433  33  699999999998888888


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ++..+..+|.|++.+|+|++|.+.+++|+..+|+|++
T Consensus       200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d  236 (290)
T PF04733_consen  200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD  236 (290)
T ss_dssp             SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence            9999999999999999999999999999999998764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.48  E-value=0.00072  Score=61.30  Aligned_cols=115  Identities=17%  Similarity=0.184  Sum_probs=86.7

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC------------CChHH--------H----HHH--HhhhHHHhhhH
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS------------FVDDE--------Q----KLV--KSLRVSCWLNS  373 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~------------~~~~~--------~----~~~--~~~~~~~~~nl  373 (437)
                      ..+...+.+.-.|.|.-.+..|.+.++.+|....            +.+.+        .    ..+  -.....++.|.
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            3455666667777777777777777775532110            00100        0    001  12234567889


Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          374 AACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       374 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      +.+|.-.++|..|...+++++..||.++.+-.+.|.|++.+|+..+|++.++.+++..|..
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999964

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.47  E-value=0.00017  Score=44.33  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=30.3

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  400 (437)
                      .+|+++|.+|.++|++++|+.+++++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            568999999999999999999999999999964

...

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.45  E-value=0.00037  Score=64.18  Aligned_cols=93  Identities=22%  Similarity=0.260  Sum_probs=77.7

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      .+....+.|..+|+.|+|+.|++.|+.|++..-..+               -+-+|+|.|+++.++|..|+++..+.++.
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp---------------llAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP---------------LLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhcCCCc---------------hhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            356678899999999999999999999999866554               44789999999999999999999988865


Q ss_pred             ----CCCC-------------------------HHHHHHHHHHHHHhccHHHHHHHH
Q 013755          397 ----DCHN-------------------------VKALYRRAQAYMEIADLILAELDI  424 (437)
Q Consensus       397 ----~p~~-------------------------~~a~~~~g~~~~~lg~~~~A~~~~  424 (437)
                          .|..                         ..|+..++.+++..++++.|.+.+
T Consensus       208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL  264 (459)
T ss_pred             hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence                3321                         266788899999999999998764

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.40  E-value=0.00073  Score=46.18  Aligned_cols=43  Identities=23%  Similarity=0.335  Sum_probs=34.9

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQA  410 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~  410 (437)
                      .+++.+|..++++|+|.+|..+++.+|+++|+|..|......+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            4578899999999999999999999999999998887655444

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.40  E-value=0.0012  Score=62.58  Aligned_cols=120  Identities=17%  Similarity=0.208  Sum_probs=92.5

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC----------C-Ch----H-------------HHHHHHhhhHH
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS----------F-VD----D-------------EQKLVKSLRVS  368 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~----------~-~~----~-------------~~~~~~~~~~~  368 (437)
                      ++....+.|..++...++.+|+..+.+.|....+...          . .+    +             ...+....+..
T Consensus         5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE   84 (518)
T ss_pred             hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778888999999999999999888876543211          0 00    0             01223345567


Q ss_pred             HhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          369 CWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV-----KALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       369 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~-----~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ++.|++..+.++.+|.+++.++.-.+.+-...+     .++..+|.++..++.|+++++.|++|+++.-++.|
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D  157 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD  157 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence            899999999999999999999999998744333     67888999999999999999999999998776654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.39  E-value=0.00076  Score=61.91  Aligned_cols=67  Identities=16%  Similarity=0.133  Sum_probs=63.4

Q ss_pred             hhhHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      .++.|.-+++.|+|..|...|..-+...|++   +.|+|++|.+++.+|+|++|...|..+.+-.|+++-
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCC
Confidence            7899999999999999999999999999987   589999999999999999999999999999998864

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=0.0018  Score=65.38  Aligned_cols=103  Identities=17%  Similarity=0.107  Sum_probs=89.7

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ..+++.|..+|+.++|..|++.|...+...+.+...         ..-+....+++.||+++.+.+.|++++.+|=+.+|
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~---------~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~  425 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS---------DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR  425 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhh---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence            457889999999999999999999999998875421         12267788999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          399 HNVKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      .++-.-+.+-++....+.-++|+....+.+..
T Consensus       426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            99988888889999999999999988877654

>PRK01490 tig trigger factor; Provisional

Probab=97.38  E-value=0.0014  Score=66.20  Aligned_cols=72  Identities=14%  Similarity=0.243  Sum_probs=55.4

Q ss_pred             CccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755          222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (437)
Q Consensus       222 ~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~  301 (437)
                      +|..|+++   ...++.|.+|.+.+++||+.+|.+|++|+...|.++..-.|+...        -.|....|.|.|..+.
T Consensus       173 ~g~~~~~~---~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~--------lagk~~~f~v~v~~V~  241 (435)
T PRK01490        173 DGEEFEGG---KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAED--------LAGKEATFKVTVKEVK  241 (435)
T ss_pred             CCEECcCC---CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccccc--------CCCCeEEEEEEEEEec
Confidence            44555433   346899999999999999999999999999999886544554322        2467899999999998


Q ss_pred             ccc
Q 013755          302 KEK  304 (437)
Q Consensus       302 ~~~  304 (437)
                      ...
T Consensus       242 ~~~  244 (435)
T PRK01490        242 EKE  244 (435)
T ss_pred             cCC
Confidence            653

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.37  E-value=0.00073  Score=68.29  Aligned_cols=93  Identities=17%  Similarity=0.169  Sum_probs=52.0

Q ss_pred             HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV  401 (437)
Q Consensus       322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~  401 (437)
                      .-.|..+-..++|++|+.+|+.||.+.+++               ..++.-+|....++++|+-....-.+.|++.|.+-
T Consensus        79 Hv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN---------------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r  143 (700)
T KOG1156|consen   79 HVLGLLQRSDKKYDEAIKCYRNALKIEKDN---------------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR  143 (700)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH
Confidence            334444555555666666666666555443               24455555555566666555555555556666555


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755          402 KALYRRAQAYMEIADLILAELDIKKAIE  429 (437)
Q Consensus       402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~  429 (437)
                      -.|+..|.++..+|+|..|...++...+
T Consensus       144 a~w~~~Avs~~L~g~y~~A~~il~ef~~  171 (700)
T KOG1156|consen  144 ASWIGFAVAQHLLGEYKMALEILEEFEK  171 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666666666666666555544443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.37  E-value=0.0013  Score=66.67  Aligned_cols=115  Identities=17%  Similarity=0.142  Sum_probs=88.7

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC---------CChHHHHHHHhhhHH---------HhhhHHHHHHhccC
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS---------FVDDEQKLVKSLRVS---------CWLNSAACCLKLKD  382 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~---------~~~~~~~~~~~~~~~---------~~~nla~~~~~~~~  382 (437)
                      +.-.+..++..|+...|...+.+|++..|+...         +...+.+..+.+...         +|+.-+....-+++
T Consensus       587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~  666 (913)
T KOG0495|consen  587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN  666 (913)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence            344566778888888998888888888776432         122333444444433         45555666666899


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          383 YQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       383 ~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .++|++.|+++|+..|+..+.|..+|+++..+++.+.|.+.|...++..|+..
T Consensus       667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i  719 (913)
T KOG0495|consen  667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI  719 (913)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc
Confidence            99999999999999999999999999999999999999999999999988764

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.33  E-value=0.00033  Score=69.86  Aligned_cols=95  Identities=13%  Similarity=0.056  Sum_probs=84.8

Q ss_pred             HHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013755          328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRR  407 (437)
Q Consensus       328 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~  407 (437)
                      +-..|+-..|+.++.+|+...|....              .-+.|||.++++.+-...|-..+.++|.++...+-.+|-+
T Consensus       617 wr~~gn~~~a~~cl~~a~~~~p~~~~--------------v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~  682 (886)
T KOG4507|consen  617 WRAVGNSTFAIACLQRALNLAPLQQD--------------VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSL  682 (886)
T ss_pred             eeecCCcHHHHHHHHHHhccChhhhc--------------ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhc
Confidence            44578899999999999988775432              2377999999999999999999999999998889999999


Q ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          408 AQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       408 g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      |.+|+.+.+.+.|++.|++|++++|+|++
T Consensus       683 g~~~l~l~~i~~a~~~~~~a~~~~~~~~~  711 (886)
T KOG4507|consen  683 GNAYLALKNISGALEAFRQALKLTTKCPE  711 (886)
T ss_pred             chhHHHHhhhHHHHHHHHHHHhcCCCChh
Confidence            99999999999999999999999999874

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.31  E-value=0.00065  Score=71.66  Aligned_cols=95  Identities=14%  Similarity=0.070  Sum_probs=81.9

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  400 (437)
                      +..+|-.+.+.+++..|+..|+.|++..|.+.               .+|..+|.+|...|+|..|++.|++|..++|.+
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~---------------n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s  629 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY---------------NLWLGLGEAYPESGRYSHALKVFTKASLLRPLS  629 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhcCCchhH---------------HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence            34478888888999999999999999988764               668889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          401 VKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      .-+-|..|.....+|+|.+|++.+...+..
T Consensus       630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~  659 (1238)
T KOG1127|consen  630 KYGRFKEAVMECDNGKYKEALDALGLIIYA  659 (1238)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            888999999999999999999888877653

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.28  E-value=0.0016  Score=66.03  Aligned_cols=98  Identities=15%  Similarity=0.041  Sum_probs=83.9

Q ss_pred             HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHH
Q 013755          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA  403 (437)
Q Consensus       324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a  403 (437)
                      .++.....++.++|+++++++|+..|...               .+|+.+|+++.++++.+.|...|...++..|+.+-.
T Consensus       657 s~~~er~ld~~eeA~rllEe~lk~fp~f~---------------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL  721 (913)
T KOG0495|consen  657 SANLERYLDNVEEALRLLEEALKSFPDFH---------------KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL  721 (913)
T ss_pred             HhHHHHHhhhHHHHHHHHHHHHHhCCchH---------------HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH
Confidence            34444556778888888888888887654               679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          404 LYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       404 ~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      |..++..-...|+.-.|...|+++.--+|.|..
T Consensus       722 WllLakleEk~~~~~rAR~ildrarlkNPk~~~  754 (913)
T KOG0495|consen  722 WLLLAKLEEKDGQLVRARSILDRARLKNPKNAL  754 (913)
T ss_pred             HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch
Confidence            999999999999999999999999999998753

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.28  E-value=0.0026  Score=62.74  Aligned_cols=87  Identities=22%  Similarity=0.173  Sum_probs=77.9

Q ss_pred             CCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 013755          331 NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQA  410 (437)
Q Consensus       331 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~  410 (437)
                      .++|+.|+..+++.....|.                  +..-+|.+++.+++-.+|++...++|+.+|.+...+...+..
T Consensus       182 t~~~~~ai~lle~L~~~~pe------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f  243 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPE------------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF  243 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCc------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            46799999999997776543                  245589999999999999999999999999999999999999


Q ss_pred             HHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          411 YMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       411 ~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++..++++.|+...++|.++.|++-
T Consensus       244 Ll~k~~~~lAL~iAk~av~lsP~~f  268 (395)
T PF09295_consen  244 LLSKKKYELALEIAKKAVELSPSEF  268 (395)
T ss_pred             HHhcCCHHHHHHHHHHHHHhCchhH
Confidence            9999999999999999999999863

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.26  E-value=0.00067  Score=41.20  Aligned_cols=32  Identities=31%  Similarity=0.424  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          403 ALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       403 a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      |+|++|.++..+|++++|+..|+++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            66777777777777777777777777776653

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.24  E-value=0.0023  Score=67.72  Aligned_cols=100  Identities=17%  Similarity=0.076  Sum_probs=87.2

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccC-HHHHHHHHHHHHHhCC
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD-YQGAIELCSKVLDCDC  398 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-~~~Ai~~~~~al~~~p  398 (437)
                      .....|......++|++|++..+++|+.+|++.               .++..+|.++..++. .++|-++|-.|.+++|
T Consensus         4 ~aLK~Ak~al~nk~YeealEqskkvLk~dpdNY---------------nA~vFLGvAl~sl~q~le~A~ehYv~AaKldp   68 (1238)
T KOG1127|consen    4 TALKSAKDALRNKEYEEALEQSKKVLKEDPDNY---------------NAQVFLGVALWSLGQDLEKAAEHYVLAAKLDP   68 (1238)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcc---------------hhhhHHHHHHHhccCCHHHHHHHHHHHHhcCh
Confidence            345567788899999999999999999999875               568899999999998 9999999999999999


Q ss_pred             CCHHHHHHHHHHHHH---hccHHHHHHHHHHHHHhCCCC
Q 013755          399 HNVKALYRRAQAYME---IADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~---lg~~~~A~~~~~~al~l~P~n  434 (437)
                      +|.-||-.++..|..   ...++++-..|.+++.+.|+.
T Consensus        69 dnlLAWkGL~nLye~~~dIl~ld~~~~~yq~~~l~le~q  107 (1238)
T KOG1127|consen   69 DNLLAWKGLGNLYERYNDILDLDRAAKCYQRAVLILENQ  107 (1238)
T ss_pred             hhhHHHHHHHHHHHccchhhhhhHhHHHHHHHHHhhhhh
Confidence            999999888888876   557888999999988877654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.00096  Score=62.90  Aligned_cols=88  Identities=22%  Similarity=0.165  Sum_probs=71.0

Q ss_pred             hHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHH
Q 013755          326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALY  405 (437)
Q Consensus       326 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~  405 (437)
                      ..+..+.+|.-|+.+++-.+.....       +.       ..+-..+|.|++++|+|++|+..|+-+.+.+..+.+...
T Consensus        30 edfls~rDytGAislLefk~~~~~E-------EE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~v   95 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDRE-------EE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGV   95 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchh-------hh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccch
Confidence            3466778999999988877644221       11       244567899999999999999999999988777889999


Q ss_pred             HHHHHHHHhccHHHHHHHHHHH
Q 013755          406 RRAQAYMEIADLILAELDIKKA  427 (437)
Q Consensus       406 ~~g~~~~~lg~~~~A~~~~~~a  427 (437)
                      ++|.|++.+|.|.+|...-.+|
T Consensus        96 nLAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   96 NLACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999998776654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.21  E-value=0.00036  Score=47.70  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          402 KALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ..+|.+|.++.++|+|++|+.+++.+|+++|+|..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q   36 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ   36 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence            46899999999999999999999999999999964

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.20  E-value=0.0023  Score=58.29  Aligned_cols=71  Identities=23%  Similarity=0.164  Sum_probs=65.9

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH  437 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~  437 (437)
                      ..-+++-|...++.|+|.+|+..|+.+....|..   .++...++.++++.++|++|+..+++-+.+.|+++++
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            4668999999999999999999999999998866   5899999999999999999999999999999999874

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.18  E-value=0.0045  Score=53.94  Aligned_cols=103  Identities=16%  Similarity=0.120  Sum_probs=80.6

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ......+..++..+++++|+..++.++..-.+            ..++..+-.+||.+.++++++++|+...+..-.-.-
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w  157 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQTKD------------ENLKALAALRLARVQLQQKKADAALKTLDTIKEESW  157 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccchh------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH
Confidence            34556788899999999999999999965321            134556678999999999999999988766543211


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                       .+..--.+|.++..+|+-++|+..|++|++.++++
T Consensus       158 -~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         158 -AAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             -HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence             12335678999999999999999999999987654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.0026  Score=61.31  Aligned_cols=101  Identities=13%  Similarity=0.028  Sum_probs=58.9

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ..+.-.|+.+...++.++|+-.|+.|..+.|..               ..+|--|-.||+..+++.+|.-..+.++..-|
T Consensus       335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r---------------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~  399 (564)
T KOG1174|consen  335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYR---------------LEIYRGLFHSYLAQKRFKEANALANWTIRLFQ  399 (564)
T ss_pred             hHHHhccHHHHhccchHHHHHHHHHHHhcchhh---------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh
Confidence            344555555555666666666666555554432               34555666666666666666666666666666


Q ss_pred             CCHHHHHHHH-HHH-HHhccHHHHHHHHHHHHHhCCCC
Q 013755          399 HNVKALYRRA-QAY-MEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       399 ~~~~a~~~~g-~~~-~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      .+++++-..| .++ ..-.--++|...++++|.++|..
T Consensus       400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y  437 (564)
T KOG1174|consen  400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY  437 (564)
T ss_pred             cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc
Confidence            6666666664 222 22233456666666666666653

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.12  E-value=0.0019  Score=61.17  Aligned_cols=102  Identities=19%  Similarity=0.176  Sum_probs=83.9

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC-
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH-  399 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-  399 (437)
                      +...|+.+...+.|++|++.|++|+++.....+.         -+...++..||..+-++.++++|+-+..+|+++--. 
T Consensus       125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~---------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~  195 (518)
T KOG1941|consen  125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA---------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY  195 (518)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc---------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence            3347888899999999999999999987654432         233567889999999999999999999999887321 


Q ss_pred             ---C------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          400 ---N------VKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       400 ---~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                         +      .-++|+++.++..+|+.-+|.++++.|.++.
T Consensus       196 ~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  196 GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence               1      3568999999999999999999999998763

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.12  E-value=0.00033  Score=43.25  Aligned_cols=34  Identities=29%  Similarity=0.385  Sum_probs=30.2

Q ss_pred             HHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHH
Q 013755          340 KYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIE  388 (437)
Q Consensus       340 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~  388 (437)
                      +|++||++.|++.               .+|+|+|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~---------------~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNA---------------EAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCH---------------HHHHHHHHHHHHCcCHHhhcC
Confidence            4899999999875               779999999999999999863

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.11  E-value=0.00034  Score=43.81  Aligned_cols=25  Identities=28%  Similarity=0.286  Sum_probs=12.8

Q ss_pred             hhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          370 WLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       370 ~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      |.+||.+|.++|+|++|+.+|+++|
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555533

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.002  Score=60.37  Aligned_cols=69  Identities=20%  Similarity=0.246  Sum_probs=60.3

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN----VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +.-|-.-|.-|++.++|..|+..|.+.|.....+    +-.|.+||.|.+.+|+|..|+.++.+|+.++|.+.
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~  153 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL  153 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence            3445567889999999999999999999876544    45689999999999999999999999999999874

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.06  E-value=0.0081  Score=53.75  Aligned_cols=102  Identities=18%  Similarity=0.133  Sum_probs=77.3

Q ss_pred             HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc-cCHHHHHHHHHHHHHhCCCC--
Q 013755          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL-KDYQGAIELCSKVLDCDCHN--  400 (437)
Q Consensus       324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-~~~~~Ai~~~~~al~~~p~~--  400 (437)
                      .+...|+..+..+|++++++++++..+...+         ...+.-+..+|..|..- .++++||.+|++|-+.....  
T Consensus        79 eA~~cykk~~~~eAv~cL~~aieIyt~~Grf---------~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees  149 (288)
T KOG1586|consen   79 EAANCYKKVDPEEAVNCLEKAIEIYTDMGRF---------TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES  149 (288)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHhhhHH---------HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh
Confidence            3444667778999999999999987665443         23345567788888764 89999999999998764432  


Q ss_pred             ----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          401 ----VKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       401 ----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                          -+.+..-|.--..+++|.+|++.|++.....-+|
T Consensus       150 ~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n  187 (288)
T KOG1586|consen  150 VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN  187 (288)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                3667777888888999999999999987765544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=0.0038  Score=58.97  Aligned_cols=63  Identities=17%  Similarity=0.168  Sum_probs=36.4

Q ss_pred             hHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          372 NSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       372 nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      .||.+++..-.|++||+.|.++|.-+|+..-.-..+|.||.++.-|+-+-+.++--|..-|++
T Consensus       156 SLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS  218 (557)
T KOG3785|consen  156 SLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS  218 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence            344444444556666666666666666555555556666666666666666666555555554

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.03  E-value=0.0098  Score=53.24  Aligned_cols=105  Identities=23%  Similarity=0.290  Sum_probs=80.2

Q ss_pred             HHHhhHHHhC-CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755          322 KEEGNLLFKN-GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       322 ~~~g~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  400 (437)
                      ...|..|-.. .++++|+.+|++|-+......         .......+++..|..-.++++|.+|+..|+++....-+|
T Consensus       117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee---------s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n  187 (288)
T KOG1586|consen  117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE---------SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN  187 (288)
T ss_pred             hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3445555444 688999999999998875532         223345677888888888999999999999998766555


Q ss_pred             H------HH-HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          401 V------KA-LYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       401 ~------~a-~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .      +- ++..|.||+...+.-.|...+++-.+++|.-.
T Consensus       188 ~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~  229 (288)
T KOG1586|consen  188 NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT  229 (288)
T ss_pred             hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence            3      33 56678888888999899999999999999754

>smart00028 TPR Tetratricopeptide repeats

Probab=97.02  E-value=0.0012  Score=39.09  Aligned_cols=32  Identities=38%  Similarity=0.507  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          402 KALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      .+++++|.++..++++++|+..|+++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35566666666666666666666666666654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.01  E-value=0.001  Score=41.56  Aligned_cols=30  Identities=20%  Similarity=0.108  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          403 ALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       403 a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      +|.++|.+|..+|+|++|+..|+++|.+..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            588999999999999999999999775543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.95  E-value=0.0081  Score=60.41  Aligned_cols=113  Identities=23%  Similarity=0.164  Sum_probs=83.9

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC---------ChHHHHH----HHhhh-----HHHhhhHHHHHHhc
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF---------VDDEQKL----VKSLR-----VSCWLNSAACCLKL  380 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~~~~~~----~~~~~-----~~~~~nla~~~~~~  380 (437)
                      ..++..-+.+-+.++|++|.....+.|...|++...         ..+..+.    +....     ....+..|.|++++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            566677778888999999999999999887765421         1111111    11111     11125789999999


Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          381 KDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       381 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      ++.++|+..++   -+++...+.+..+|+.++++++|++|++.|+..++-+.++
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd  143 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD  143 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence            99999999988   5666778899999999999999999999999987765443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.95  E-value=0.0019  Score=59.86  Aligned_cols=68  Identities=21%  Similarity=0.133  Sum_probs=62.4

Q ss_pred             hhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCCC
Q 013755          370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH  437 (437)
Q Consensus       370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~  437 (437)
                      -++.|.-..+.|+.++|...|+.||.++|+++.++..+|+....-++.-+|-.+|-+||.++|.|.+|
T Consensus       119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA  186 (472)
T KOG3824|consen  119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA  186 (472)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence            45666677789999999999999999999999999999999999999999999999999999998754

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.91  E-value=0.0014  Score=39.67  Aligned_cols=32  Identities=28%  Similarity=0.417  Sum_probs=30.0

Q ss_pred             HhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755          369 CWLNSAACCLKLKDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       369 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  400 (437)
                      +++++|.||.++|++++|+..++++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            57899999999999999999999999999974

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.0059  Score=61.14  Aligned_cols=62  Identities=13%  Similarity=0.194  Sum_probs=48.8

Q ss_pred             CCCCeEEEcCCCCcchHHHHHhcccccCcEEEEE--EcCCCCCCccccccccccCCCCceEEEEEEEeeeeccc
Q 013755          233 GEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVT--INHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEK  304 (437)
Q Consensus       233 ~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~--i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~~  304 (437)
                      ...-+.|.||.+.++||++.+|.+|+.|+...|.  +|.+|.-+.          -.|.+..|.|.|..+....
T Consensus       181 ~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~----------LaGK~a~F~V~vkeVk~~e  244 (441)
T COG0544         181 KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEE----------LAGKEATFKVKVKEVKKRE  244 (441)
T ss_pred             cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhH----------hCCCceEEEEEEEEEeecC
Confidence            4567899999999999999999999999998854  465554321          2456788999999987643

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.84  E-value=0.0032  Score=58.38  Aligned_cols=84  Identities=19%  Similarity=0.121  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK  392 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~  392 (437)
                      .+.+.+......|....+.|+.++|..+|+.|+.+.|..+               .++...|.....-++.-+|-++|-+
T Consensus       111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p---------------~~L~e~G~f~E~~~~iv~ADq~Y~~  175 (472)
T KOG3824|consen  111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNP---------------QILIEMGQFREMHNEIVEADQCYVK  175 (472)
T ss_pred             hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCH---------------HHHHHHhHHHHhhhhhHhhhhhhhe
Confidence            3455566666677888999999999999999999999875               6688889888888999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHH
Q 013755          393 VLDCDCHNVKALYRRAQAY  411 (437)
Q Consensus       393 al~~~p~~~~a~~~~g~~~  411 (437)
                      ||.++|.|.+|+.+++...
T Consensus       176 ALtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  176 ALTISPGNSEALVNRARTT  194 (472)
T ss_pred             eeeeCCCchHHHhhhhccc
Confidence            9999999999999988754

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.84  E-value=0.0048  Score=63.42  Aligned_cols=68  Identities=15%  Similarity=-0.032  Sum_probs=59.7

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      .+...|..+...|++++|...|++|+.+.|+                ..+|..+|.++...|++++|+..|++|+.++|.
T Consensus       422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps----------------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        422 IYEILAVQALVKGKTDEAYQAINKAIDLEMS----------------WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG  485 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            3455677778899999999999999999873                257999999999999999999999999999999


Q ss_pred             CHHH
Q 013755          400 NVKA  403 (437)
Q Consensus       400 ~~~a  403 (437)
                      ++..
T Consensus       486 ~pt~  489 (517)
T PRK10153        486 ENTL  489 (517)
T ss_pred             CchH
Confidence            8753

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.79  E-value=0.0076  Score=61.35  Aligned_cols=101  Identities=24%  Similarity=0.202  Sum_probs=81.4

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      --+...|..+...|+.++|+..|++++....           ...++..-+++.+|.|++-+.+|++|..++.+.++.+.
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~-----------~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~  336 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQS-----------EWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK  336 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchh-----------hHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence            3456788889999999999999999984321           23455677899999999999999999999999988653


Q ss_pred             CCHHH--HHHHHHHHHHhccH-------HHHHHHHHHHHHhC
Q 013755          399 HNVKA--LYRRAQAYMEIADL-------ILAELDIKKAIEAD  431 (437)
Q Consensus       399 ~~~~a--~~~~g~~~~~lg~~-------~~A~~~~~~al~l~  431 (437)
                       ..++  .|..|.|+..+++.       ++|...|+++-.+-
T Consensus       337 -WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  337 -WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             -cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence             4455  46678999999999       88888888876653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.79  E-value=0.024  Score=49.84  Aligned_cols=94  Identities=29%  Similarity=0.329  Sum_probs=46.2

Q ss_pred             HHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC-CHHHHH
Q 013755          327 LLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH-NVKALY  405 (437)
Q Consensus       327 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~  405 (437)
                      .++..++++.|+..|.+++...+....            ....+..++..+...+++..|+..+.+++...+. ...++.
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  206 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNE------------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL  206 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccc------------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence            666667777777777776664432000            1122233333344444555555555555555444 344455


Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          406 RRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       406 ~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      .++.++...++++.|+..+.+++...|
T Consensus       207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~  233 (291)
T COG0457         207 NLGLLYLKLGKYEEALEYYEKALELDP  233 (291)
T ss_pred             HhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence            555555555555555555555544444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.77  E-value=0.012  Score=59.18  Aligned_cols=116  Identities=19%  Similarity=0.133  Sum_probs=84.1

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCC------------hHHHHH----HHhhhHHHhhhHHHHHHhccCH
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV------------DDEQKL----VKSLRVSCWLNSAACCLKLKDY  383 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~------------~~~~~~----~~~~~~~~~~nla~~~~~~~~~  383 (437)
                      .+.-+|..+|+.++|++|+..|+..++-...+.+..            ..++.+    ..+---..++|.|..+...|+|
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky  191 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY  191 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence            556689999999999999999999876433221100            000000    0011235789999999999999


Q ss_pred             HHHHHHHHHHHHh-------CCCC--------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          384 QGAIELCSKVLDC-------DCHN--------VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       384 ~~Ai~~~~~al~~-------~p~~--------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .+|++.+++|+.+       +..+        .-....++.++..+|+-++|...|...++.+|.|.
T Consensus       192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE  258 (652)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence            9999999999543       1112        13467889999999999999999999999988764

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.037  Score=51.50  Aligned_cols=100  Identities=18%  Similarity=0.165  Sum_probs=80.0

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHH-------
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS-------  391 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~-------  391 (437)
                      +.....+..+...+++..|...|..++...|...               .+..-++.||...|+.+.|...+.       
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~---------------~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~  199 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENS---------------EAKLLLAECLLAAGDVEAAQAILAALPLQAQ  199 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc---------------hHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence            4456778889999999999999999999988764               446677788888777755444333       


Q ss_pred             ---------------------------HHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          392 ---------------------------KVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       392 ---------------------------~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                                                 +.+..||++..+-+.+|..|...|++++|++.+-..++.+-+
T Consensus       200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~  268 (304)
T COG3118         200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG  268 (304)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence                                       233448999999999999999999999999999888877543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.70  E-value=0.014  Score=53.22  Aligned_cols=56  Identities=14%  Similarity=0.147  Sum_probs=38.4

Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          381 KDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       381 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +++..|.-.|+..-+..|..+..+..++.|++.+++|++|...++.||.-++++++
T Consensus       187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe  242 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE  242 (299)
T ss_pred             hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence            34666777777666655566677777777777777777777777777777666653

>smart00028 TPR Tetratricopeptide repeats

Probab=96.66  E-value=0.0027  Score=37.37  Aligned_cols=33  Identities=36%  Similarity=0.488  Sum_probs=30.0

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  400 (437)
                      .+++++|.++..++++++|+.+++++++++|.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            457899999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.64  E-value=0.016  Score=59.42  Aligned_cols=98  Identities=15%  Similarity=0.021  Sum_probs=85.7

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      .-.++-.+..+-..|+|++|+....+||...|..               ..+|+..|.++-++|++.+|...++.|-.+|
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~---------------~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD  258 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL---------------VELYMTKARILKHAGDLKEAAEAMDEARELD  258 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence            3456778888889999999999999999998764               4779999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      +.+--.-...++.+++.|+.++|...+..-..-
T Consensus       259 ~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~  291 (517)
T PF12569_consen  259 LADRYINSKCAKYLLRAGRIEEAEKTASLFTRE  291 (517)
T ss_pred             hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence            988777777888889999999999988765443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.63  E-value=0.0034  Score=54.10  Aligned_cols=54  Identities=15%  Similarity=0.171  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc----------HHHHHHHHHHHHHhCCCCC
Q 013755          382 DYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIAD----------LILAELDIKKAIEADPQNR  435 (437)
Q Consensus       382 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~----------~~~A~~~~~~al~l~P~n~  435 (437)
                      -|+.|.+.++.....+|.++.+|++.|.+++.+.+          +++|+.-|++||.++|+..
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h   69 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH   69 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH
Confidence            37899999999999999999999999999998855          5779999999999999864

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.62  E-value=0.0016  Score=64.00  Aligned_cols=66  Identities=32%  Similarity=0.262  Sum_probs=60.9

Q ss_pred             hhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +-+-|.-.++-+.|+.|+..|.+||+++|+++..+-+|+.++.+.++|..|+.++.+|++++|...
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~   72 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI   72 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh
Confidence            346677788899999999999999999999999999999999999999999999999999999753

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.59  E-value=0.026  Score=49.66  Aligned_cols=103  Identities=26%  Similarity=0.201  Sum_probs=75.4

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHH-HHHhccCHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA-CCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-~~~~~~~~~~Ai~~~~~al  394 (437)
                      .....+...+..+...+++..|+..+.+++...+...               ......+. ++...+++..|+..+.+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~  157 (291)
T COG0457          93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD---------------LAEALLALGALYELGDYEEALELYEKAL  157 (291)
T ss_pred             chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445566777788888888888888888888765542               11223333 7888888888888888888


Q ss_pred             HhCC---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          395 DCDC---HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       395 ~~~p---~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      ..+|   .....++.++..+...++++.|+..+.+++...+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         158 ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             hcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            8776   35666777777778888888888888888887765

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.58  E-value=0.0076  Score=49.19  Aligned_cols=70  Identities=19%  Similarity=0.230  Sum_probs=56.7

Q ss_pred             HHHhhhHHHHHHhcc---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          367 VSCWLNSAACCLKLK---DYQGAIELCSKVLD-CDCH-NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       367 ~~~~~nla~~~~~~~---~~~~Ai~~~~~al~-~~p~-~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ....+|+|.|+.+..   +.++.+..++..++ -.|. .-..+|.+|..++++++|+.|+.+++..|+.+|+|+.
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q  106 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ  106 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence            456788888887754   46778888888886 4443 3467889999999999999999999999999999875

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.54  E-value=0.037  Score=50.03  Aligned_cols=98  Identities=16%  Similarity=0.116  Sum_probs=74.2

Q ss_pred             hHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccC-------HHHHHHHHHHHHHhCC
Q 013755          326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD-------YQGAIELCSKVLDCDC  398 (437)
Q Consensus       326 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-------~~~Ai~~~~~al~~~p  398 (437)
                      ..+-....+++|+..|.-||-........        ....+.+++.+|-+|..+++       +.+|+..|.+|++...
T Consensus        85 ~~~~~~Rt~~~ai~~YkLAll~~~~~~~~--------~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~  156 (214)
T PF09986_consen   85 RDFSGERTLEEAIESYKLALLCAQIKKEK--------PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENED  156 (214)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCc
Confidence            35556678999999999999875422111        12456788899999999988       4556677777766542


Q ss_pred             C------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          399 H------NVKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       399 ~------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      .      ....+|.+|..+.++|++++|+.+|.+++..-
T Consensus       157 ~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  157 FPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             CCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            2      25789999999999999999999999998654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.50  E-value=0.042  Score=52.94  Aligned_cols=114  Identities=13%  Similarity=-0.052  Sum_probs=88.6

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhcc---------CCCCCh-------HHHHHHHhhhHHHhhhHHHHHHh
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE---------DGSFVD-------DEQKLVKSLRVSCWLNSAACCLK  379 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~---------~~~~~~-------~~~~~~~~~~~~~~~nla~~~~~  379 (437)
                      .........+..+...|++++|.+...++|+..-+         ....+.       +.+.........+++.||..+++
T Consensus       261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k  340 (400)
T COG3071         261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK  340 (400)
T ss_pred             cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence            33555566777888999999999999999884211         111111       23334444455788999999999


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          380 LKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       380 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      .+.|.+|-.+++.|+...| +...+..+|.++.++|+..+|.+.++.+|.+
T Consensus       341 ~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         341 NKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             hhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            9999999999999999987 4677889999999999999999999999854

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.48  E-value=0.035  Score=43.95  Aligned_cols=103  Identities=17%  Similarity=0.164  Sum_probs=78.1

Q ss_pred             HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHH----HHhccCHHHHHHHHHHHHHhCCC
Q 013755          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAAC----CLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~----~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      .|..+|.+|++-+|++..+..+.....+...    + .+..+...+++.+|..    -.+.--.-.|++++.++..+.|.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~----~-~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~   76 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESS----W-LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD   76 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCch----H-HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence            5778999999999999999999886654321    1 2334444445455433    12223356789999999999999


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          400 NVKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      .+..+|.+|.=+-....|++++.-.+++|.+.
T Consensus        77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            99999999998888889999999999999763

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.46  E-value=0.033  Score=61.79  Aligned_cols=64  Identities=25%  Similarity=0.054  Sum_probs=46.7

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCH--------NVKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~--------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      .++.++|.++...|++++|...+++++.+...        ....+..+|.++...|++++|...+.+++.+.
T Consensus       532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence            45677888888888888888888888775211        12335567778888888888888888887764

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.46  E-value=0.0043  Score=55.25  Aligned_cols=61  Identities=16%  Similarity=0.194  Sum_probs=56.8

Q ss_pred             HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          375 ACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       375 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ....+.++.+.|.+.|.++|++-|.+...|||+|....+.|+++.|.+.|++.|+++|.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            3456788999999999999999999999999999999999999999999999999999874

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.24  E-value=0.053  Score=60.21  Aligned_cols=100  Identities=11%  Similarity=0.010  Sum_probs=79.7

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  400 (437)
                      ....|..++..|++++|...+++++...+...          ......++.++|.++...|++++|...+.+++......
T Consensus       455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~  524 (903)
T PRK04841        455 NALRAQVAINDGDPEEAERLAELALAELPLTW----------YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH  524 (903)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence            33467778899999999999999998644321          01133456789999999999999999999999763321


Q ss_pred             ------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          401 ------VKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       401 ------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                            ..++.++|.++...|++++|...+++++.+
T Consensus       525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                  356788999999999999999999999886

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.15  E-value=0.023  Score=52.72  Aligned_cols=86  Identities=12%  Similarity=0.035  Sum_probs=72.9

Q ss_pred             HHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013755          328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRR  407 (437)
Q Consensus       328 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~  407 (437)
                      +.+..+|..||++...-.+..|...               ..+.-||.||+...+|..|..+|++.-.+.|...+.-+..
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~r---------------AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~   84 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSR---------------AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ   84 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccch---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            4677888999998887777766432               4577899999999999999999999999999999988889


Q ss_pred             HHHHHHhccHHHHHHHHHHHH
Q 013755          408 AQAYMEIADLILAELDIKKAI  428 (437)
Q Consensus       408 g~~~~~lg~~~~A~~~~~~al  428 (437)
                      |+.+++.+.|.+|++......
T Consensus        85 AQSLY~A~i~ADALrV~~~~~  105 (459)
T KOG4340|consen   85 AQSLYKACIYADALRVAFLLL  105 (459)
T ss_pred             HHHHHHhcccHHHHHHHHHhc
Confidence            999999999999988765543

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.10  E-value=0.0018  Score=60.96  Aligned_cols=59  Identities=22%  Similarity=0.287  Sum_probs=55.0

Q ss_pred             HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       377 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .+..|.++.|++.|..+++++|.+...|-.++.+++++++...|+++|..|++++|+..
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa  182 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA  182 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc
Confidence            34567899999999999999999999999999999999999999999999999999764

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.10  E-value=0.091  Score=46.05  Aligned_cols=102  Identities=15%  Similarity=0.084  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      ......+...|+.|.+.|+++.|++.|.++.......            ......++++-.+.+..++|..+..+..+|-
T Consensus        33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~------------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP------------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3445677889999999999999999999988765332            3356778899999999999999999999987


Q ss_pred             HhCC--CCH----HHHHHHHHHHHHhccHHHHHHHHHHHH
Q 013755          395 DCDC--HNV----KALYRRAQAYMEIADLILAELDIKKAI  428 (437)
Q Consensus       395 ~~~p--~~~----~a~~~~g~~~~~lg~~~~A~~~~~~al  428 (437)
                      .+-.  .+.    +.....|..++..++|.+|...|-.++
T Consensus       101 ~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  101 SLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence            6532  222    233445777788899999998887665

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.08  E-value=0.092  Score=50.67  Aligned_cols=117  Identities=19%  Similarity=0.165  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCC-----------CCChH-----HHHHHHh----hhHHHh
Q 013755          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-----------SFVDD-----EQKLVKS----LRVSCW  370 (437)
Q Consensus       311 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~-----------~~~~~-----~~~~~~~----~~~~~~  370 (437)
                      ...+..++......|..-+-.|+|.+|.+...++-+.-+...           ...++     -..+..+    -...++
T Consensus        77 ~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~  156 (400)
T COG3071          77 SRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVE  156 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHH
Confidence            446778888889999999999999999999988765432210           00000     0011111    123345


Q ss_pred             hhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 013755          371 LNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKA  427 (437)
Q Consensus       371 ~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a  427 (437)
                      ..++......+++..|.....++++..|.++.++-..-.+|..+|+|.+....+.+.
T Consensus       157 ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L  213 (400)
T COG3071         157 LTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL  213 (400)
T ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            556666777777777777777777777777777777777777777777766665543

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=96.07  E-value=0.052  Score=43.50  Aligned_cols=81  Identities=15%  Similarity=0.009  Sum_probs=65.3

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH----HH
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV----LD  395 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a----l~  395 (437)
                      ++-..|+..++.+++-.|+-+|++|+.+.......+..+.+++-...+....|||.-+..+|+-+-.++|.+-|    +.
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999988765444445566666677777899999999999999999998755    55


Q ss_pred             hCCCC
Q 013755          396 CDCHN  400 (437)
Q Consensus       396 ~~p~~  400 (437)
                      +-|.-
T Consensus        83 LiPQC   87 (140)
T PF10952_consen   83 LIPQC   87 (140)
T ss_pred             hccCC
Confidence            55543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.92  E-value=0.038  Score=59.48  Aligned_cols=110  Identities=9%  Similarity=0.030  Sum_probs=75.6

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC---------------ChHHHHHHHh----hhHHHhhhHHHHHHhcc
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF---------------VDDEQKLVKS----LRVSCWLNSAACCLKLK  381 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------------~~~~~~~~~~----~~~~~~~nla~~~~~~~  381 (437)
                      +...-..+.+.|++++|.+.|+...+...-.+..               -++..+.+.+    -...+|..+..++...|
T Consensus       429 ~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g  508 (697)
T PLN03081        429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHK  508 (697)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Confidence            5555566666777777777776665422111110               0011111111    11345777878888899


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          382 DYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       382 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      +++.|...++++++++|++...|..+..+|...|++++|.+.++...+.
T Consensus       509 ~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        509 NLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             CcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999877654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.92  E-value=0.076  Score=39.17  Aligned_cols=69  Identities=16%  Similarity=0.250  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+....+.|..+|...+.++|+..++++|+..++.+            .+..++-.+..+|...|+|.+++.+..+=++
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~------------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE------------DRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567788999999999999999999999999876532            2456778888999999999999998876655


Q ss_pred             h
Q 013755          396 C  396 (437)
Q Consensus       396 ~  396 (437)
                      +
T Consensus        72 ~   72 (80)
T PF10579_consen   72 I   72 (80)
T ss_pred             H
Confidence            4

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.87  E-value=0.12  Score=47.31  Aligned_cols=88  Identities=16%  Similarity=0.173  Sum_probs=68.6

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013755          332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAY  411 (437)
Q Consensus       332 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~  411 (437)
                      ++++.|.-.|+..-...+..               ..+++-+|.|++.+++|++|....+.||..+++++.++.++-.+-
T Consensus       187 ek~qdAfyifeE~s~k~~~T---------------~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a  251 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEKTPPT---------------PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA  251 (299)
T ss_pred             hhhhhHHHHHHHHhcccCCC---------------hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            45777777777755532222               256788999999999999999999999999999999999999999


Q ss_pred             HHhccHHHHHH-HHHHHHHhCCCC
Q 013755          412 MEIADLILAEL-DIKKAIEADPQN  434 (437)
Q Consensus       412 ~~lg~~~~A~~-~~~~al~l~P~n  434 (437)
                      ..+|.-.++.. .+.+.....|++
T Consensus       252 ~~~Gkd~~~~~r~l~QLk~~~p~h  275 (299)
T KOG3081|consen  252 LHLGKDAEVTERNLSQLKLSHPEH  275 (299)
T ss_pred             HHhCCChHHHHHHHHHHHhcCCcc
Confidence            99998777664 444444555654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.86  E-value=0.21  Score=45.25  Aligned_cols=105  Identities=14%  Similarity=0.070  Sum_probs=67.6

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..+...++.+-..++|++|..++.+|.+...++..+         -..+..+-..+.....+..|.++..++++|..+.
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl---------fhAAKayEqaamLake~~klsEvvdl~eKAs~lY  101 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL---------FHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY  101 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4445555666666789999999999999776554321         1123445556666667788888888888887662


Q ss_pred             -----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          398 -----CHNVKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       398 -----p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                           |+-+-.-.-+|-=..+.-+.++|+..|++++.+-
T Consensus       102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavv  140 (308)
T KOG1585|consen  102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVV  140 (308)
T ss_pred             HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence                 3333333333333445567778888888877653

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.78  E-value=0.19  Score=47.46  Aligned_cols=121  Identities=19%  Similarity=0.141  Sum_probs=88.3

Q ss_pred             CCChHHHHHHHHHHHHHhhHHHhCC-cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHH
Q 013755          308 EMNNQGKIEAAGRKKEEGNLLFKNG-KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGA  386 (437)
Q Consensus       308 ~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A  386 (437)
                      .+++......+..+++.|..+++++ +|+.|...+++|+++.+.... .........+++..++..++.+|+..+.++..
T Consensus        25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~  103 (278)
T PF08631_consen   25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV  103 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            4566777889999999999999999 999999999999999643111 01122345677889999999999998886543


Q ss_pred             HHHHHHHH----HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          387 IELCSKVL----DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       387 i~~~~~al----~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      .+ |.+++    ...|+.+..++..=.++.+.++.+++.+.+.+.+.-
T Consensus       104 ~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen  104 EK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            33 44443    345776777655555666678888888888877754

It is also involved in sporulation [].

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.78  E-value=0.038  Score=42.51  Aligned_cols=50  Identities=18%  Similarity=0.172  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          386 AIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       386 Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .+..+++.++.+|++..+.|.+|.++...|++++|++.+-.+++.+++..
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~   56 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE   56 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence            45678889999999999999999999999999999999999998887763

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.75  E-value=0.031  Score=51.54  Aligned_cols=72  Identities=17%  Similarity=0.192  Sum_probs=65.9

Q ss_pred             hhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          365 LRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       365 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      .......|+=..+...++|+.|+.+.++.+.++|.++.-+--+|.+|..+|.+.-|+.++...++..|+++.
T Consensus       179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~  250 (269)
T COG2912         179 ILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI  250 (269)
T ss_pred             HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence            345566778888999999999999999999999999999999999999999999999999999999998864

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.68  E-value=0.18  Score=47.17  Aligned_cols=72  Identities=14%  Similarity=0.134  Sum_probs=66.6

Q ss_pred             HHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          359 QKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       359 ~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      ...+.+....++..++..+...++++.++...++.++++|-+..+|.++-.+|+..|+...|+..|++.-++
T Consensus       145 R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         145 RRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            355667788999999999999999999999999999999999999999999999999999999999988764

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.58  E-value=0.022  Score=36.30  Aligned_cols=29  Identities=28%  Similarity=0.281  Sum_probs=21.8

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      .++.|+|.+|..+|+|++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45778888888888888888888887765

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.52  E-value=0.3  Score=42.52  Aligned_cols=95  Identities=12%  Similarity=-0.060  Sum_probs=77.7

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ..+...++..|..+++..|...++...+..|.....             .-.+-+|.++..+|++.+|...++.++...|
T Consensus       125 a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p-------------d~~Ll~aR~laa~g~~a~Aesafe~a~~~yp  191 (251)
T COG4700         125 AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP-------------DGHLLFARTLAAQGKYADAESAFEVAISYYP  191 (251)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC-------------CchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence            345667888999999999999999998887654322             3366789999999999999999999999988


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 013755          399 HNVKALYRRAQAYMEIADLILAELDIKKA  427 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~a  427 (437)
                      + +.+-.+.+.-+.++|+.++|.+.+...
T Consensus       192 g-~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         192 G-PQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             C-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            4 778888899999999888887655443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.51  E-value=0.019  Score=56.53  Aligned_cols=98  Identities=14%  Similarity=0.103  Sum_probs=73.3

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHH-hhccC-CCCChHHH-HHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAAD-CVSED-GSFVDDEQ-KLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~-~~~~~-~~~~~~~~-~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  393 (437)
                      ......+.|..+|+.+.|..++.+|.+||+ ..... ..+..... .-...-...+++|.|..|+..|+.-.|.++|.++
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            344456788999999999999999999996 22110 01111000 1112223467899999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHh
Q 013755          394 LDCDCHNVKALYRRAQAYMEI  414 (437)
Q Consensus       394 l~~~p~~~~a~~~~g~~~~~l  414 (437)
                      ....-.|+..|.|+|.|+...
T Consensus       362 v~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  362 VHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHHhcCcHHHHHHHHHHHHH
Confidence            999999999999999998754

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.48  E-value=0.071  Score=56.32  Aligned_cols=92  Identities=15%  Similarity=0.085  Sum_probs=62.6

Q ss_pred             HHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013755          327 LLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYR  406 (437)
Q Consensus       327 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~  406 (437)
                      .....++|.+|+....+.++..|+..               .+..--|..++++|+.++|..+.+..-..-+++...+--
T Consensus        18 d~ld~~qfkkal~~~~kllkk~Pn~~---------------~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~   82 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKHPNAL---------------YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQF   82 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHCCCcH---------------HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHH
Confidence            34566788888888888888777643               223344667777777777774443333444556666777


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          407 RAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       407 ~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      +-.||..++++++|...|++++..+|+
T Consensus        83 l~~~y~d~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   83 LQNVYRDLGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence            777777777777777777777777776

>PRK10941 hypothetical protein; Provisional

Probab=95.45  E-value=0.17  Score=47.34  Aligned_cols=79  Identities=14%  Similarity=-0.066  Sum_probs=67.6

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ..-+.+.=..+.+.++|+.|+++.+..+.+.|+++               .-+.-+|.+|.+++.+..|+.+++.-++..
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp---------------~e~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDP---------------YEIRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            44556667788999999999999999999999876               225679999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 013755          398 CHNVKALYRRAQAY  411 (437)
Q Consensus       398 p~~~~a~~~~g~~~  411 (437)
                      |+.+.+-.-+.++.
T Consensus       246 P~dp~a~~ik~ql~  259 (269)
T PRK10941        246 PEDPISEMIRAQIH  259 (269)
T ss_pred             CCchhHHHHHHHHH
Confidence            99998876665554

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.45  E-value=0.24  Score=48.25  Aligned_cols=116  Identities=18%  Similarity=0.085  Sum_probs=85.0

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHH-hhccCCCCC------------------hHHHHHHHhhhHHHhhhHHHHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAAD-CVSEDGSFV------------------DDEQKLVKSLRVSCWLNSAACCL  378 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~nla~~~~  378 (437)
                      .....+.+..+...|+..+|+...+..+. .........                  ...........+.+++.+|.-..
T Consensus       184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~  263 (352)
T PF02259_consen  184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD  263 (352)
T ss_pred             cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence            45556677778888888889888888887 222210000                  00123334566778888888777


Q ss_pred             hc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH-----------------HHHHHHHHHHHHhCCC
Q 013755          379 KL------KDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADL-----------------ILAELDIKKAIEADPQ  433 (437)
Q Consensus       379 ~~------~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~-----------------~~A~~~~~~al~l~P~  433 (437)
                      .+      +.+++++..|.++++++|.+.++++..|..+..+=+.                 ..|+..|-+|+.+.++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            77      8899999999999999999999999999988766332                 3488999999998876

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.45  E-value=0.15  Score=50.89  Aligned_cols=119  Identities=18%  Similarity=0.092  Sum_probs=81.4

Q ss_pred             ChHHHHHHHHHHHHH------hhHHHhC---CcHHHHHHHHHHHHHhhccCCCCCh------HHHHH----HHhhhHHHh
Q 013755          310 NNQGKIEAAGRKKEE------GNLLFKN---GKYERAGKKYNKAADCVSEDGSFVD------DEQKL----VKSLRVSCW  370 (437)
Q Consensus       310 ~~~~~~~~~~~~~~~------g~~~~~~---g~~~~A~~~y~~al~~~~~~~~~~~------~~~~~----~~~~~~~~~  370 (437)
                      +.+.+++.+.+-.+.      |..++..   .-..+|..+|++|++.....-..+.      ..++.    ......-+.
T Consensus       183 np~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~K  262 (539)
T PF04184_consen  183 NPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAK  262 (539)
T ss_pred             CHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhH
Confidence            556666655544332      2222322   3368899999999987544221110      11111    112234456


Q ss_pred             hhHHHHHHhccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 013755          371 LNSAACCLKLKDYQGAIELCSKVLDCDCH--NVKALYRRAQAYMEIADLILAELDIKKAI  428 (437)
Q Consensus       371 ~nla~~~~~~~~~~~Ai~~~~~al~~~p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al  428 (437)
                      ..+|.|..++|+.++|++.+...++..|.  +...++++-.+++.++.|.++...+.+--
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            78999999999999999999999998875  56789999999999999999988887753

The molecular function of this protein is uncertain.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.42  E-value=0.041  Score=54.33  Aligned_cols=111  Identities=18%  Similarity=0.108  Sum_probs=76.9

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH-h-
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD-C-  396 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~-~-  396 (437)
                      ..+....+.+|..|+|.+|.+.+...---.......+      -+-.....++|+|.++++++.|.-+..+|.+||+ . 
T Consensus       241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T------~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c  314 (696)
T KOG2471|consen  241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTIT------PQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC  314 (696)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHhcccccccCcccc------chhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence            3455566777778888888776544211100000000      0112344578999999999999999999999996 1 


Q ss_pred             -------CC---------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          397 -------DC---------HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       397 -------~p---------~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                             .|         ..-..+|+.|..|+..|+.-.|.++|.++....-.||
T Consensus       315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP  369 (696)
T KOG2471|consen  315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP  369 (696)
T ss_pred             HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc
Confidence                   11         1236799999999999999999999999988765554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.41  E-value=0.099  Score=49.50  Aligned_cols=95  Identities=15%  Similarity=0.068  Sum_probs=65.8

Q ss_pred             HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh-ccCHHHHHHHHHHHHHhCCCCHH
Q 013755          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK-LKDYQGAIELCSKVLDCDCHNVK  402 (437)
Q Consensus       324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~Ai~~~~~al~~~p~~~~  402 (437)
                      ..+..-+.+..+.|...|.+|++.....               ..+|...|..-++ .++.+.|...|+.+++..|.+..
T Consensus         7 ~m~~~~r~~g~~~aR~vF~~a~~~~~~~---------------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~   71 (280)
T PF05843_consen    7 YMRFMRRTEGIEAARKVFKRARKDKRCT---------------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD   71 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCCS----------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHhCChHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH
Confidence            3344444555788888888887432211               2567777777555 56666688888888888888888


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          403 ALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       403 a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      .+.....-+..+++.+.|+..|++++..-|.
T Consensus        72 ~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~  102 (280)
T PF05843_consen   72 FWLEYLDFLIKLNDINNARALFERAISSLPK  102 (280)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc
Confidence            8888888888888888888888888865443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.24  E-value=0.12  Score=43.48  Aligned_cols=65  Identities=12%  Similarity=0.054  Sum_probs=53.1

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      .....+...+..+...|++++|+..+++++..+|.+.               .+|..+-.+|..+|++.+|+..|++...
T Consensus        60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E---------------~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   60 LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDE---------------EAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H---------------HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            4455667778888999999999999999999998764               5688889999999999999999998743

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.08  E-value=0.31  Score=54.57  Aligned_cols=61  Identities=8%  Similarity=-0.034  Sum_probs=38.8

Q ss_pred             HhhhHHHHHHhccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755          369 CWLNSAACCLKLKDYQGAIELCSKVLDCD-CHNVKALYRRAQAYMEIADLILAELDIKKAIE  429 (437)
Q Consensus       369 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~  429 (437)
                      .|..+-.+|.+.|++++|++.|++..+.+ +.+...|..+..+|.+.|++++|+..|++..+
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~  642 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK  642 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            45555666667777777777777666654 33455666666666666666666666666554

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.07  E-value=0.17  Score=50.28  Aligned_cols=87  Identities=21%  Similarity=0.235  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013755          335 ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEI  414 (437)
Q Consensus       335 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l  414 (437)
                      .+-...|++|+...+.+.               .+|.+-..-..+.+.+.+--..|.++|..+|+++..|..-|.-.+..
T Consensus        88 ~rIv~lyr~at~rf~~D~---------------~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~  152 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDV---------------KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEI  152 (568)
T ss_pred             HHHHHHHHHHHHhcCCCH---------------HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhh
Confidence            445677999998877654               55666665555666699999999999999999999999988888877


Q ss_pred             cc-HHHHHHHHHHHHHhCCCCCC
Q 013755          415 AD-LILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       415 g~-~~~A~~~~~~al~l~P~n~~  436 (437)
                      +. .+.|.+.|.++|+.+|+++.
T Consensus       153 n~ni~saRalflrgLR~npdsp~  175 (568)
T KOG2396|consen  153 NLNIESARALFLRGLRFNPDSPK  175 (568)
T ss_pred             ccchHHHHHHHHHHhhcCCCChH
Confidence            76 99999999999999999874

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.05  E-value=0.11  Score=42.50  Aligned_cols=80  Identities=14%  Similarity=0.140  Sum_probs=56.5

Q ss_pred             HHHHhhHHHhCC---cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          321 KKEEGNLLFKNG---KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       321 ~~~~g~~~~~~g---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      .++.+-.+.+..   +.++-+.+++..++..  .+           +-+..+.+.||..|+++++|++++++++..|+.+
T Consensus        35 ~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~--~~-----------~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e  101 (149)
T KOG3364|consen   35 QFNLAWALVRSRDTEDVQEGIVILEDLLKSA--HP-----------ERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE  101 (149)
T ss_pred             HHHHHHHHHcccchHHHHHhHHHHHHHhhhc--Cc-----------ccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            344555555443   4566677777777511  11           1134778899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 013755          398 CHNVKALYRRAQAYME  413 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~  413 (437)
                      |+|..|.-..-.+.-+
T Consensus       102 ~~n~Qa~~Lk~~ied~  117 (149)
T KOG3364|consen  102 PNNRQALELKETIEDK  117 (149)
T ss_pred             CCcHHHHHHHHHHHHH
Confidence            9999887655544433

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.01  E-value=0.12  Score=51.21  Aligned_cols=121  Identities=15%  Similarity=0.150  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhh-hHHHHHH-hccC-----HHHH
Q 013755          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWL-NSAACCL-KLKD-----YQGA  386 (437)
Q Consensus       314 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-nla~~~~-~~~~-----~~~A  386 (437)
                      .+.......+.|..+|..|+|.+|+..|+.+|...+-..--+.++..+++++...+.- -+|+-.. ..+.     .++.
T Consensus       200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~  279 (422)
T PF06957_consen  200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ  279 (422)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence            4455556677899999999999999999999999886654455666666666655432 2332211 1111     2222


Q ss_pred             HHHHHHHH-----HhCCCCHHHHHHHHH-HHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          387 IELCSKVL-----DCDCHNVKALYRRAQ-AYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       387 i~~~~~al-----~~~p~~~~a~~~~g~-~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      .+.++-|.     ++.|.+...-+|.|. ..++.++|..|...-++.|++.|+.
T Consensus       280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~  333 (422)
T PF06957_consen  280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP  333 (422)
T ss_dssp             HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence            23333322     334444443444444 3467889999999999999988864

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>PLN03077 Protein ECB2; Provisional

Probab=94.95  E-value=0.22  Score=55.10  Aligned_cols=62  Identities=11%  Similarity=0.063  Sum_probs=50.2

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE  429 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~  429 (437)
                      .+|..|-.++...++.+.|....+++++++|++...|..++.+|...|+|++|.+..+...+
T Consensus       658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        658 AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            34555555556678888888888899999999999999999999999999999888776654

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=94.95  E-value=0.11  Score=48.09  Aligned_cols=73  Identities=18%  Similarity=0.123  Sum_probs=62.9

Q ss_pred             hHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 013755          356 DDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAI  428 (437)
Q Consensus       356 ~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al  428 (437)
                      +++.+-+..+...++...|..|...|.+.+|++.|++++.++|-+...+..+-..|..+|+--.|+..|++.-
T Consensus       268 edererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         268 EDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            3455666777777788889999999999999999999999999999999999999999999888887776643

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.93  E-value=0.32  Score=48.57  Aligned_cols=103  Identities=19%  Similarity=0.145  Sum_probs=75.2

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh-CC
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC-DC  398 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-~p  398 (437)
                      ..+..|+.+.+.|+.++|++.|+..++..|....             ..++.||..|++.++.|.++.....+-=++ -|
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~-------------l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp  327 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-------------LNIRENLIEALLELQAYADVQALLAKYDDISLP  327 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch-------------hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence            3456899999999999999999999998875432             367899999999999999988777663222 24


Q ss_pred             CCHHHHHHHHHHHHH-hcc---------------HHHHHHHHHHHHHhCCCCC
Q 013755          399 HNVKALYRRAQAYME-IAD---------------LILAELDIKKAIEADPQNR  435 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~-lg~---------------~~~A~~~~~~al~l~P~n~  435 (437)
                      +.+...|..|....+ .++               -..|++.+.+|.+.+|.-+
T Consensus       328 kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp  380 (539)
T PF04184_consen  328 KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP  380 (539)
T ss_pred             chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence            555555555443322 111               2347789999999999765

The molecular function of this protein is uncertain.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.81  E-value=0.068  Score=33.96  Aligned_cols=30  Identities=27%  Similarity=0.154  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          401 VKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      ..++.++|.+|..+|++++|+..+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357899999999999999999999999976

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.80  E-value=0.18  Score=39.03  Aligned_cols=65  Identities=15%  Similarity=0.184  Sum_probs=50.3

Q ss_pred             HHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          327 LLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       327 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+.++|..|++.+.+.............      ......+++++|.++...|++++|+..+++|+.+-
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            457889999999999999987654332110      12234568899999999999999999999999874

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.75  E-value=0.057  Score=34.03  Aligned_cols=30  Identities=20%  Similarity=0.120  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          402 KALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      ..|.++|.+-+...+|++|+.+|++||++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467788888888888888888888888764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.73  E-value=0.22  Score=47.20  Aligned_cols=108  Identities=14%  Similarity=0.060  Sum_probs=78.1

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC---CC---------hH-HHHHHH----------hhhHHHhhhHHH
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS---FV---------DD-EQKLVK----------SLRVSCWLNSAA  375 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~---~~---------~~-~~~~~~----------~~~~~~~~nla~  375 (437)
                      +.....+..++.+|++.+|...+.+.|+-.|.+--   +.         .+ ....+.          ....-++--+|.
T Consensus       104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF  183 (491)
T KOG2610|consen  104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF  183 (491)
T ss_pred             HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence            45566777889999999999999999987775421   00         00 000111          111223345677


Q ss_pred             HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 013755          376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKK  426 (437)
Q Consensus       376 ~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~  426 (437)
                      ++...|-|.+|.+..++++++++.+.-+..-++.++...+++.++++...+
T Consensus       184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            888899999999999999999999988888899999999999999887765

>PLN03218 maturation of RBCL 1; Provisional

Probab=94.72  E-value=0.48  Score=53.14  Aligned_cols=110  Identities=15%  Similarity=0.108  Sum_probs=65.3

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhh--ccCCC----------C-C-hHHHHHHHh-------hhHHHhhhHHHHH
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCV--SEDGS----------F-V-DDEQKLVKS-------LRVSCWLNSAACC  377 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~--~~~~~----------~-~-~~~~~~~~~-------~~~~~~~nla~~~  377 (437)
                      ..+......|.+.|++++|+..|.+.....  |+...          . . ++.......       ....+|+.+..+|
T Consensus       615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay  694 (1060)
T PLN03218        615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC  694 (1060)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            455566666777777777777777665531  11000          0 0 000011111       1134567777777


Q ss_pred             HhccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755          378 LKLKDYQGAIELCSKVLDC--DCHNVKALYRRAQAYMEIADLILAELDIKKAIE  429 (437)
Q Consensus       378 ~~~~~~~~Ai~~~~~al~~--~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~  429 (437)
                      .+.|++++|+..|++..+.  .| +...|..+..+|.+.|++++|++.|++...
T Consensus       695 ~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~  747 (1060)
T PLN03218        695 SNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKR  747 (1060)
T ss_pred             HhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7888888888887776543  34 456677777777777888888777776654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=94.65  E-value=0.35  Score=52.17  Aligned_cols=116  Identities=9%  Similarity=-0.017  Sum_probs=81.2

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhh--ccCCC------------CChHHHHHHHhhh--------HHHhhhHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCV--SEDGS------------FVDDEQKLVKSLR--------VSCWLNSAA  375 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~--~~~~~------------~~~~~~~~~~~~~--------~~~~~nla~  375 (437)
                      ...+......|.+.|++++|+..|++.+...  |+...            .-++-..-...+.        ...|..+..
T Consensus       391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~  470 (697)
T PLN03081        391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE  470 (697)
T ss_pred             eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence            4567788889999999999999999987642  21100            0011111111111        125667778


Q ss_pred             HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       376 ~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +|.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++.++++|++.
T Consensus       471 ~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~  528 (697)
T PLN03081        471 LLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL  528 (697)
T ss_pred             HHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence            888889999998887654 2334 456788888888999999999999999999999864

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.29  E-value=0.16  Score=39.34  Aligned_cols=59  Identities=20%  Similarity=0.193  Sum_probs=47.8

Q ss_pred             HHhccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          377 CLKLKDYQGAIELCSKVLDCDCH---------NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       377 ~~~~~~~~~Ai~~~~~al~~~p~---------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ..+.++|..|++.+.+.+.....         ...++.++|.++...|++++|+..+++|+.+...+.
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~   75 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG   75 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence            45789999998888888765321         146789999999999999999999999998865443

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.24  E-value=0.26  Score=53.91  Aligned_cols=101  Identities=12%  Similarity=0.098  Sum_probs=76.0

Q ss_pred             HHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc-------cCHHHHHHHHHHHHH
Q 013755          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL-------KDYQGAIELCSKVLD  395 (437)
Q Consensus       323 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-------~~~~~Ai~~~~~al~  395 (437)
                      .-.++++..+.|++|+..|++.-...|....-            -.+.+.+|.+.+.+       ..+.+|+.-|++ |.
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  546 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEG------------YEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LH  546 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccc------------hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hc
Confidence            34566788899999999999999888764322            23445555554432       357778887776 34


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      --|.-+--|...|.+|..+++|++-+++|..|++--|++|+
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        547 GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence            44666777888999999999999999999999999998876

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.24  E-value=0.41  Score=43.44  Aligned_cols=99  Identities=19%  Similarity=0.215  Sum_probs=69.4

Q ss_pred             HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH----hC--
Q 013755          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD----CD--  397 (437)
Q Consensus       324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~----~~--  397 (437)
                      .+-.....-+.++|+++|++++.+...+..         .......+...+..+.++++|.+|-..+.+-..    .+  
T Consensus       116 KAak~lenv~Pd~AlqlYqralavve~~dr---------~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y  186 (308)
T KOG1585|consen  116 KAAKALENVKPDDALQLYQRALAVVEEDDR---------DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY  186 (308)
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhccch---------HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence            344455666888999999999988765432         233445677888899999999999887776432    22  


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      ++--+++.-.-.+|+...+|..|...++.+-++.
T Consensus       187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip  220 (308)
T KOG1585|consen  187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP  220 (308)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence            2334556555566677779999999999876653

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.23  E-value=0.78  Score=45.34  Aligned_cols=113  Identities=12%  Similarity=0.005  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHhhHHHhCCc-HHHHHHHHHHHHHhhccCCCCCh-------------------HHHH------------
Q 013755          313 GKIEAAGRKKEEGNLLFKNGK-YERAGKKYNKAADCVSEDGSFVD-------------------DEQK------------  360 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~-~~~A~~~y~~al~~~~~~~~~~~-------------------~~~~------------  360 (437)
                      ++.+.+.-+...|..+.+.|+ -++|+++++.++..-+.+..-..                   ...-            
T Consensus       374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~  453 (549)
T PF07079_consen  374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT  453 (549)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence            345667777888888888887 77888888888876554321000                   0000            


Q ss_pred             --HHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 013755          361 --LVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKK  426 (437)
Q Consensus       361 --~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~  426 (437)
                        .+.+....-.+.=|.-++..|+|.+|..++.=..+.+| ++.+|-.+|.|++...+|++|..+++.
T Consensus       454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence              00000011122223446779999999999999999999 899999999999999999999998875

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.17  E-value=0.072  Score=47.70  Aligned_cols=61  Identities=23%  Similarity=0.342  Sum_probs=54.1

Q ss_pred             hHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755          326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV  401 (437)
Q Consensus       326 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~  401 (437)
                      ...++.++++.|.+.|.+|+.+.|...               .-|+.+|....+.|+++.|.+.|+++|+++|.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~---------------~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWA---------------AGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhh---------------hhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            456788999999999999999988643               5589999999999999999999999999999763

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.93  E-value=0.62  Score=46.22  Aligned_cols=99  Identities=14%  Similarity=0.132  Sum_probs=85.7

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  400 (437)
                      +..-|.---.+++++.|.+.|++||..+..+               +.+|+..+.+-++.++...|...+++|+.+-|.-
T Consensus        76 WikYaqwEesq~e~~RARSv~ERALdvd~r~---------------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV  140 (677)
T KOG1915|consen   76 WIKYAQWEESQKEIQRARSVFERALDVDYRN---------------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV  140 (677)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhccccc---------------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence            3344455556788999999999999886443               4789999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      -+.||..-..-..+|+..-|.+.|++=++..|+.
T Consensus       141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e  174 (677)
T KOG1915|consen  141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE  174 (677)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH
Confidence            8999999888899999999999999999998864

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.91  E-value=0.46  Score=47.13  Aligned_cols=54  Identities=22%  Similarity=0.212  Sum_probs=47.1

Q ss_pred             HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       377 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      -.++++++.+...|++-|+..|.|..+|...|..-..||+.+.|...|.-|+..
T Consensus       447 ElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q  500 (677)
T KOG1915|consen  447 ELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ  500 (677)
T ss_pred             HHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence            456888999999999999999999999999999999999999999988888753

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=93.85  E-value=0.48  Score=50.35  Aligned_cols=99  Identities=16%  Similarity=0.044  Sum_probs=72.7

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  400 (437)
                      ..-.|-.+++.|++++|.. +-+++...+.+.              -..+--+-.||..++++++|...|++++..+|+ 
T Consensus        46 ~vLkaLsl~r~gk~~ea~~-~Le~~~~~~~~D--------------~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-  109 (932)
T KOG2053|consen   46 KVLKALSLFRLGKGDEALK-LLEALYGLKGTD--------------DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-  109 (932)
T ss_pred             HHHHHHHHHHhcCchhHHH-HHhhhccCCCCc--------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-
Confidence            3446778899999999994 444454433321              133556788999999999999999999999998 


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .+.++.+=.||.+-++|.+=.+.--+..+..|+++
T Consensus       110 eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~  144 (932)
T KOG2053|consen  110 EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA  144 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            88888888999988888664444333444566654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.83  E-value=0.6  Score=42.92  Aligned_cols=73  Identities=14%  Similarity=0.096  Sum_probs=57.6

Q ss_pred             hhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH----hCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          364 SLRVSCWLNSAACCLKLKDYQGAIELCSKVLD----CDC--HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       364 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~----~~p--~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +....+...|+.+.++.|+.+.|..+++++-+    ++.  .+.-.+.+++.+|...++|.+|...|.+++..||.|+-
T Consensus       209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~  287 (366)
T KOG2796|consen  209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV  287 (366)
T ss_pred             cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence            44556778899999999999999999995543    332  23455677777888888999999999999999998864

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.77  E-value=0.26  Score=50.28  Aligned_cols=86  Identities=10%  Similarity=-0.004  Sum_probs=70.1

Q ss_pred             CCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHH
Q 013755          331 NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN----VKALYR  406 (437)
Q Consensus       331 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~----~~a~~~  406 (437)
                      ....+.|.+.....+...|+..               -.++..|..+...|+.++|+..+++++......    .-.+|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~---------------lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~E  310 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSA---------------LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFE  310 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHH
Confidence            4566778888888888877643               346788999999999999999999998543322    355899


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          407 RAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       407 ~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      +|.++..+.+|++|..+|.+.++.+
T Consensus       311 l~w~~~~~~~w~~A~~~f~~L~~~s  335 (468)
T PF10300_consen  311 LAWCHMFQHDWEEAAEYFLRLLKES  335 (468)
T ss_pred             HHHHHHHHchHHHHHHHHHHHHhcc
Confidence            9999999999999999999998764

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.69  E-value=0.28  Score=50.15  Aligned_cols=69  Identities=20%  Similarity=0.143  Sum_probs=60.3

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN------VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ..++-|-|.-++++.+|..+++.|...+..-|.+      +|..-.++.||+.+.+.+.|++.+..|-+.+|.++
T Consensus       354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~  428 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP  428 (872)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence            3455677889999999999999999999876654      57778899999999999999999999999999874

>PLN03077 Protein ECB2; Provisional

Probab=93.33  E-value=0.85  Score=50.45  Aligned_cols=115  Identities=13%  Similarity=0.073  Sum_probs=68.2

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHh--hccCCCCC------------hHHHHHHHhh--------hHHHhhhHHHH
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADC--VSEDGSFV------------DDEQKLVKSL--------RVSCWLNSAAC  376 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~--~~~~~~~~------------~~~~~~~~~~--------~~~~~~nla~~  376 (437)
                      ..+......|.+.|+.++|+..|++..+.  .|+...+.            ++-+.-...+        ....|..+..+
T Consensus       555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~  634 (857)
T PLN03077        555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL  634 (857)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            45777788888999999999999987763  23221110            0111111111        12345666666


Q ss_pred             HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       377 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +.+.|++++|.+.+++. ...|+ +..|..+-.++..-++.+.|....+++++++|++.
T Consensus       635 l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~  691 (857)
T PLN03077        635 LGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSV  691 (857)
T ss_pred             HHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence            77777777777666653 34443 44454554555666677777777777777777764

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=93.30  E-value=1.2  Score=42.07  Aligned_cols=99  Identities=19%  Similarity=0.169  Sum_probs=74.0

Q ss_pred             HHHHhhHHHh-CCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          321 KKEEGNLLFK-NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       321 ~~~~g~~~~~-~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      +...|..-+. .++.+.|...|+++++..+.+.               ..++.....+.++++.+.|...|++++..-|.
T Consensus        38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~---------------~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~  102 (280)
T PF05843_consen   38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDP---------------DFWLEYLDFLIKLNDINNARALFERAISSLPK  102 (280)
T ss_dssp             HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H---------------HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc
Confidence            4455666555 6777779999999999988754               44566667778899999999999999988765


Q ss_pred             CH---HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          400 NV---KALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       400 ~~---~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      ..   ..|-+...-=...|+.+...+..+++.++-|++
T Consensus       103 ~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~  140 (280)
T PF05843_consen  103 EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED  140 (280)
T ss_dssp             HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence            54   355555666677899999999999999998874

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.12  E-value=1.5  Score=43.80  Aligned_cols=105  Identities=20%  Similarity=0.028  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc-CHHHHHHHH
Q 013755          312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELC  390 (437)
Q Consensus       312 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~Ai~~~  390 (437)
                      ..+++....+.--+..++...+++.|..++++|..+....+.+        ..++..++.-||.||.+.. .+..|....
T Consensus        41 s~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f--------ydvKf~a~SlLa~lh~~~~~s~~~~KalL  112 (629)
T KOG2300|consen   41 SFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF--------YDVKFQAASLLAHLHHQLAQSFPPAKALL  112 (629)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH--------HhhhhHHHHHHHHHHHHhcCCCchHHHHH
Confidence            3344444444444445567899999999999999988766654        2455677888999999887 899999999


Q ss_pred             HHHHHhCCCCH----HHHHHHHHHHHHhccHHHHHHHH
Q 013755          391 SKVLDCDCHNV----KALYRRAQAYMEIADLILAELDI  424 (437)
Q Consensus       391 ~~al~~~p~~~----~a~~~~g~~~~~lg~~~~A~~~~  424 (437)
                      .+|+++..+++    +.+|.+++.+.-..+|..|++.+
T Consensus       113 rkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL  150 (629)
T KOG2300|consen  113 RKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL  150 (629)
T ss_pred             HHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence            99999977664    77899999999999999998773

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.09  E-value=0.23  Score=47.05  Aligned_cols=86  Identities=19%  Similarity=-0.008  Sum_probs=67.7

Q ss_pred             HHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC-C---HHH
Q 013755          328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH-N---VKA  403 (437)
Q Consensus       328 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~---~~a  403 (437)
                      +...|-|++|...-.+|+++++.+.               .+...+|.++...+++.++.++..+.-..... .   .--
T Consensus       185 L~E~g~y~dAEk~A~ralqiN~~D~---------------Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHN  249 (491)
T KOG2610|consen  185 LEECGIYDDAEKQADRALQINRFDC---------------WASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHN  249 (491)
T ss_pred             HHHhccchhHHHHHHhhccCCCcch---------------HHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhh
Confidence            4567889999999999999987753               55677888888899999999988775433221 1   233


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHH
Q 013755          404 LYRRAQAYMEIADLILAELDIKKAI  428 (437)
Q Consensus       404 ~~~~g~~~~~lg~~~~A~~~~~~al  428 (437)
                      |..-|.+|.+-++|+.|+..|.+-+
T Consensus       250 yWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  250 YWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             hHHHHHhhhcccchhHHHHHHHHHH
Confidence            6778999999999999999998765

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.93  E-value=0.38  Score=29.92  Aligned_cols=33  Identities=18%  Similarity=-0.013  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHhccHHHHHHH--HHHHHHhCCCC
Q 013755          402 KALYRRAQAYMEIADLILAELD--IKKAIEADPQN  434 (437)
Q Consensus       402 ~a~~~~g~~~~~lg~~~~A~~~--~~~al~l~P~n  434 (437)
                      +.++.+|..+...|++++|+..  |+-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4566667777777777777777  44666666654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.79  E-value=2.1  Score=36.55  Aligned_cols=86  Identities=14%  Similarity=-0.028  Sum_probs=67.3

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      ....+.+........++.+.+...+...--+-|...               .+-.--|..+...++|.+|+..++.+.+.
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~---------------e~~~~~~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFP---------------ELDLFDGWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCch---------------HHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            355667777777888888888887776666666654               34566788899999999999999998888


Q ss_pred             CCCCHHHHHHHHHHHHHhccH
Q 013755          397 DCHNVKALYRRAQAYMEIADL  417 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~  417 (437)
                      .|..+-+--.++.|+..+++.
T Consensus        74 ~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   74 APGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             CCCChHHHHHHHHHHHHcCCh
Confidence            888887777788888888874

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=92.75  E-value=0.85  Score=50.92  Aligned_cols=99  Identities=16%  Similarity=0.114  Sum_probs=51.6

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ..+......|-+.+++++|.++|++.++-..+.               ..+|...|..++++++-++|.....+||+.-|
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~---------------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT---------------RKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch---------------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence            345566666777777777777777777665421               23344444444444444444444444444444


Q ss_pred             C--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          399 H--NVKALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       399 ~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      .  +.+..-..|+.-++.|+-+.++..|+-.|.-.|
T Consensus      1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP 1631 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP 1631 (1710)
T ss_pred             hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc
Confidence            4  344444444444444444444444444444444

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=92.72  E-value=1.2  Score=49.75  Aligned_cols=66  Identities=18%  Similarity=0.073  Sum_probs=60.6

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      .+|..|+-.|.+.+++++|.+.++.-++..-+..+.|.+.|..++...+-++|...+++||+--|.
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence            456778888999999999999999999988888899999999999999999999999999999887

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.69  E-value=1.8  Score=38.08  Aligned_cols=96  Identities=15%  Similarity=0.056  Sum_probs=65.3

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhh------hHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC-CH--H
Q 013755          332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSL------RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH-NV--K  402 (437)
Q Consensus       332 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~------~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~--~  402 (437)
                      .+.+.|-..|++++........-.....+.+..-      ..-..+.+|..+...+++++|+..++.++..-.+ +.  -
T Consensus        48 ~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l  127 (207)
T COG2976          48 EQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKAL  127 (207)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHH
Confidence            3445788889998887643322111222222111      1223456778899999999999999999965432 33  3


Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHH
Q 013755          403 ALYRRAQAYMEIADLILAELDIKKA  427 (437)
Q Consensus       403 a~~~~g~~~~~lg~~~~A~~~~~~a  427 (437)
                      +-.|+|.+...++++++|+..+...
T Consensus       128 ~~lRLArvq~q~~k~D~AL~~L~t~  152 (207)
T COG2976         128 AALRLARVQLQQKKADAALKTLDTI  152 (207)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcc
Confidence            4589999999999999999887643

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.62  E-value=0.64  Score=45.21  Aligned_cols=98  Identities=14%  Similarity=0.112  Sum_probs=76.8

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      -..+.+.|..|...|+++.|++.|.++-.+....            ...+..+.|+-.+-.-+++|.....+-.+|...-
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~------------khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~  217 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA------------KHVINMCLNLILVSIYMGNWGHVLSYISKAESTP  217 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch------------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc
Confidence            3456678889999999999999999987776543            2245678888888889999999998888887651


Q ss_pred             --------CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 013755          398 --------CHNVKALYRRAQAYMEIADLILAELDIKKA  427 (437)
Q Consensus       398 --------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a  427 (437)
                              .-.++...--|.+++.++.|..|..+|-.+
T Consensus       218 ~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  218 DANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             hhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                    012466777888999999999999887654

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.54  E-value=2.5  Score=42.21  Aligned_cols=100  Identities=22%  Similarity=0.183  Sum_probs=75.7

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+....-.|......+.|+.|..+|..|.+....            .++.+-+..|+|..|++.++-+.    +.++++
T Consensus       365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld  428 (629)
T KOG2300|consen  365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAED----LYKALD  428 (629)
T ss_pred             hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHH----HHHHHH
Confidence            33455566777788889999999999999987533            24467778899999999776433    344443


Q ss_pred             -hCCCC----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          396 -CDCHN----------VKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       396 -~~p~~----------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                       +.|.|          ..++|-.|.-.+..+++.||...+.+.|+..
T Consensus       429 ~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  429 LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence             45553          3568888888999999999999999999875

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.49  E-value=0.21  Score=31.50  Aligned_cols=30  Identities=20%  Similarity=0.245  Sum_probs=27.2

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      .+|..||.+.+..++|.+|+.+|.++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            468889999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=92.30  E-value=1.7  Score=42.62  Aligned_cols=101  Identities=18%  Similarity=0.107  Sum_probs=71.0

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh--------------C
Q 013755          332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC--------------D  397 (437)
Q Consensus       332 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--------------~  397 (437)
                      ..|+++...|..++...  ++.. --..-.....-+..++.++.++..+|++..|-+.+++||-.              +
T Consensus         8 ~~Y~~~q~~F~~~v~~~--Dp~~-l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~   84 (360)
T PF04910_consen    8 KAYQEAQEQFYAAVQSH--DPNA-LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSN   84 (360)
T ss_pred             HHHHHHHHHHHHHHHcc--CHHH-HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            45666666666666542  1100 00001112223577899999999999999999999998632              1


Q ss_pred             CC------------C---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CC
Q 013755          398 CH------------N---VKALYRRAQAYMEIADLILAELDIKKAIEADPQ-NR  435 (437)
Q Consensus       398 p~------------~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~  435 (437)
                      +.            |   ..++++....+.+.|-+..|+++++-.+.+||. |+
T Consensus        85 ~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP  138 (360)
T PF04910_consen   85 LTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP  138 (360)
T ss_pred             cccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence            11            1   267899999999999999999999999999998 54

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=92.19  E-value=1.2  Score=34.25  Aligned_cols=76  Identities=13%  Similarity=0.034  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHh
Q 013755          337 AGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN--VKALYRRAQAYMEI  414 (437)
Q Consensus       337 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~--~~a~~~~g~~~~~l  414 (437)
                      .+..+++++..+|.+.               .+.+.+|.+++..|++++|++.+-.++..++++  -.+--.+=.++..+
T Consensus         7 ~~~al~~~~a~~P~D~---------------~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l   71 (90)
T PF14561_consen    7 DIAALEAALAANPDDL---------------DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL   71 (90)
T ss_dssp             HHHHHHHHHHHSTT-H---------------HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence            3556778888877753               678899999999999999999999999998866  56666666677777


Q ss_pred             ccHHHHHHHHHHH
Q 013755          415 ADLILAELDIKKA  427 (437)
Q Consensus       415 g~~~~A~~~~~~a  427 (437)
                      |.-+.-...|++-
T Consensus        72 g~~~plv~~~RRk   84 (90)
T PF14561_consen   72 GPGDPLVSEYRRK   84 (90)
T ss_dssp             -TT-HHHHHHHHH
T ss_pred             CCCChHHHHHHHH
Confidence            7755444444443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=91.89  E-value=0.27  Score=49.83  Aligned_cols=101  Identities=15%  Similarity=0.073  Sum_probs=83.6

Q ss_pred             HHHHhhHHH-hCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          321 KKEEGNLLF-KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       321 ~~~~g~~~~-~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      +...+..|. .+|+..+|..+|..|+.+.+....             -.+++.+|.++.++|...+|--.+.-|+.-.|.
T Consensus       215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k-------------di~lLSlaTiL~RaG~sadA~iILhAA~~dA~~  281 (886)
T KOG4507|consen  215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNK-------------DIALLSLATVLHRAGFSADAAVILHAALDDADF  281 (886)
T ss_pred             HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccc-------------cchhhhHHHHHHHcccccchhheeehhccCCcc
Confidence            344444444 468999999999999999876432             256788999999999999998888888888887


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      -..-+|-++.++..+++|......|..+++.+|.-
T Consensus       282 ~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f  316 (886)
T KOG4507|consen  282 FTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGF  316 (886)
T ss_pred             ccccceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence            77779999999999999999999999999988853

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=91.73  E-value=1.9  Score=34.71  Aligned_cols=75  Identities=16%  Similarity=0.139  Sum_probs=56.6

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      +..+-..+..+...|+|++++..-.+||.+......++.++=    ++.+.+-+++|.++..+|+.++|+..|+++-++
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG----klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG----KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc----hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            344556677788999999999999999999876555544332    334577889999999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.19  E-value=1.8  Score=45.21  Aligned_cols=92  Identities=29%  Similarity=0.244  Sum_probs=73.1

Q ss_pred             HHHHhhHHHhCC-----cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc---CHHHHHHHHHH
Q 013755          321 KKEEGNLLFKNG-----KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK---DYQGAIELCSK  392 (437)
Q Consensus       321 ~~~~g~~~~~~g-----~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~---~~~~Ai~~~~~  392 (437)
                      ....|..|++..     ++..|+..|.+|......                 .+.+++|.||..-.   ++.+|.++|..
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-----------------~a~~~lg~~~~~g~~~~d~~~A~~yy~~  353 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-----------------DAQYLLGVLYETGTKERDYRRAFEYYSL  353 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-----------------hHHHHHHHHHHcCCccccHHHHHHHHHH
Confidence            445777777743     788899999999887532                 45788999988755   67899999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHhC
Q 013755          393 VLDCDCHNVKALYRRAQAYMEI----ADLILAELDIKKAIEAD  431 (437)
Q Consensus       393 al~~~p~~~~a~~~~g~~~~~l----g~~~~A~~~~~~al~l~  431 (437)
                      |...  .+..|.+++|.||..-    .+...|..++++|-+..
T Consensus       354 Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  354 AAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            8876  5789999999998743    47889999999998876

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.18  E-value=2.9  Score=39.46  Aligned_cols=85  Identities=22%  Similarity=0.239  Sum_probs=65.8

Q ss_pred             HHhCCcHHHHHHHHHHHHHhhc-cCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc-CHHHHHHHHHHHHHh----CC---
Q 013755          328 LFKNGKYERAGKKYNKAADCVS-EDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKVLDC----DC---  398 (437)
Q Consensus       328 ~~~~g~~~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~Ai~~~~~al~~----~p---  398 (437)
                      ..++|+++.|...|.|+-.+.+ .++        ...+..+..++|.|...++.+ +++.|+..+++|+++    .+   
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~--------~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~   74 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDP--------DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK   74 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCc--------HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc
Confidence            4678999999999999988763 222        123456788999999999999 999999999999887    22   


Q ss_pred             CC-------HHHHHHHHHHHHHhccHHHH
Q 013755          399 HN-------VKALYRRAQAYMEIADLILA  420 (437)
Q Consensus       399 ~~-------~~a~~~~g~~~~~lg~~~~A  420 (437)
                      ..       ...+..++.+|+..+.++..
T Consensus        75 ~~~~~~elr~~iL~~La~~~l~~~~~~~~  103 (278)
T PF08631_consen   75 LSPDGSELRLSILRLLANAYLEWDTYESV  103 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            11       35678889999988876543

It is also involved in sporulation [].

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=91.03  E-value=3.1  Score=40.31  Aligned_cols=108  Identities=20%  Similarity=0.128  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..+...+..+.+.|+++.|.....++....+.....           ...+.+..|..+...|+..+|+...+..+.
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445667788889999999999999999988876432211           235566778888889999999998888777


Q ss_pred             h--CCC--------------------------------CHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCC
Q 013755          396 C--DCH--------------------------------NVKALYRRAQAYMEI------ADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       396 ~--~p~--------------------------------~~~a~~~~g~~~~~l------g~~~~A~~~~~~al~l~P~n  434 (437)
                      .  ...                                ..++++.+|.-...+      +.+++++..|++|.+++|+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  291 (352)
T PF02259_consen  213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW  291 (352)
T ss_pred             HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence            1  100                                136677788877777      88899999999999999865

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=90.98  E-value=1.4  Score=40.88  Aligned_cols=64  Identities=22%  Similarity=0.242  Sum_probs=37.8

Q ss_pred             HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      .+.|..||..|+|++|+..|+.++......         ....+...++..+..|+.++|+.+..+..+-+.+
T Consensus       182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---------gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  182 LEMAEEYFRLGDYDKALKLLEPAASSYRRE---------GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---------CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            356666666777777777766665443322         1234455556666666666666666666665443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=90.94  E-value=2.5  Score=31.29  Aligned_cols=61  Identities=16%  Similarity=0.010  Sum_probs=47.7

Q ss_pred             hhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNV---KALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~---~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      ....|.-++..++.++|+...+++|+..++..   .++=.+..+|...|+|.+++++-.+=+++
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666788999999999999999887765   45566778899999999988876655544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=90.75  E-value=2.9  Score=41.36  Aligned_cols=101  Identities=16%  Similarity=0.103  Sum_probs=68.4

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHH--hccCHHHHHHHHHHHH
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCL--KLKDYQGAIELCSKVL  394 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~--~~~~~~~Ai~~~~~al  394 (437)
                      .......++..+|+.++|..|.+.+...+...+....             ...+..++.+|.  ..-+|.+|.+.+++.+
T Consensus       130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-------------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~  196 (379)
T PF09670_consen  130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE-------------YQRYKDLCEGYDAWDRFDHKEALEYLEKLL  196 (379)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3456778888999999999999999998876333210             234556655554  4667888888888766


Q ss_pred             HhCCC---------------------------------C-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          395 DCDCH---------------------------------N-----VKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       395 ~~~p~---------------------------------~-----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      ...-.                                 .     ..-++.-|.=....|+|+.|+.-+-+++++
T Consensus       197 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl  270 (379)
T PF09670_consen  197 KRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL  270 (379)
T ss_pred             HHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            43110                                 0     011334444445678899999999999876

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.13  E-value=0.41  Score=27.19  Aligned_cols=23  Identities=26%  Similarity=0.092  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHH
Q 013755          403 ALYRRAQAYMEIADLILAELDIK  425 (437)
Q Consensus       403 a~~~~g~~~~~lg~~~~A~~~~~  425 (437)
                      +++.+|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45555666666666666655543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=89.99  E-value=2  Score=39.85  Aligned_cols=75  Identities=20%  Similarity=0.077  Sum_probs=63.4

Q ss_pred             HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV  401 (437)
Q Consensus       322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~  401 (437)
                      ...=..+...++++.|...-.+.+.++|.++..               +.-+|.+|.+++.+.-|+.+++..++..|+.+
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~e---------------irDrGliY~ql~c~~vAl~dl~~~~~~~P~~~  249 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLDLNPEDPYE---------------IRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP  249 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhh---------------ccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence            344456788999999999999999999987622               56799999999999999999999999999998


Q ss_pred             HHHHHHHHHH
Q 013755          402 KALYRRAQAY  411 (437)
Q Consensus       402 ~a~~~~g~~~  411 (437)
                      .+-.-++...
T Consensus       250 ~a~~ir~~l~  259 (269)
T COG2912         250 IAEMIRAQLL  259 (269)
T ss_pred             HHHHHHHHHH
Confidence            8876666544

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.45  E-value=3.1  Score=44.49  Aligned_cols=121  Identities=15%  Similarity=0.133  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHh-hhHHHH------HHhccCHHHH-
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCW-LNSAAC------CLKLKDYQGA-  386 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~nla~~------~~~~~~~~~A-  386 (437)
                      +.......+.|..+...|+|.+|+++|+.+|-..|-...-+.++..+++++...+. +-+|+.      -+......++ 
T Consensus       988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen  988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred             HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence            56677778899999999999999999999998776543333344444444444332 222221      1112233444 


Q ss_pred             -HHHHHHHHHhCCCCHH-HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          387 -IELCSKVLDCDCHNVK-ALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       387 -i~~~~~al~~~p~~~~-a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                       +..|-.-..+.|-+.- |+.---..++++++|..|.....+.|++.|..+
T Consensus      1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~ 1118 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPP 1118 (1202)
T ss_pred             HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCh
Confidence             3333333455565433 333333467788888888888888888877543

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=89.04  E-value=0.51  Score=44.33  Aligned_cols=69  Identities=20%  Similarity=0.209  Sum_probs=57.4

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYR-RAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~-~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ..|...+.-..+.+-|.+.-..|.++|..+|.|+..|.. -+.-+...++++.|++.|.++|.++|+++-
T Consensus       108 k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~  177 (435)
T COG5191         108 KIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR  177 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence            345555555566778999999999999999999998865 566678889999999999999999999873

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=88.98  E-value=2.8  Score=36.68  Aligned_cols=66  Identities=17%  Similarity=0.044  Sum_probs=56.0

Q ss_pred             hHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       366 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      ...++..+|.-|.+.|+++.|++.|.++.+..-..   ...++++-.+....++|.....++.+|-.+-
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            34678899999999999999999999988875332   4678888899999999999999999987653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=88.60  E-value=6.8  Score=36.98  Aligned_cols=98  Identities=22%  Similarity=0.071  Sum_probs=71.6

Q ss_pred             HHHHHHhhHHHh----CCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc-----c--CHHHHH
Q 013755          319 GRKKEEGNLLFK----NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL-----K--DYQGAI  387 (437)
Q Consensus       319 ~~~~~~g~~~~~----~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-----~--~~~~Ai  387 (437)
                      ......|..++.    ..++.+|...|++|........              ..+.++++.+|..-     -  +...|+
T Consensus       110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~  175 (292)
T COG0790         110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------------ALAMYRLGLAYLSGLQALAVAYDDKKAL  175 (292)
T ss_pred             HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------------HHHHHHHHHHHHcChhhhcccHHHHhHH
Confidence            355567777766    4589999999999998743211              23366777777653     1  234799


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCC
Q 013755          388 ELCSKVLDCDCHNVKALYRRAQAYME----IADLILAELDIKKAIEADP  432 (437)
Q Consensus       388 ~~~~~al~~~p~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~P  432 (437)
                      ..+.++-...  ++.+.+++|.+|..    ..++.+|..+|++|-+...
T Consensus       176 ~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         176 YLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             HHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence            9999988875  88999999988865    3489999999999987653

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=88.51  E-value=5.7  Score=38.77  Aligned_cols=98  Identities=16%  Similarity=0.078  Sum_probs=69.9

Q ss_pred             HHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 013755          328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRR  407 (437)
Q Consensus       328 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~  407 (437)
                      ....|+|+.|+++.+......--..       ......+..++...+..... -+...|..+..+++++.|+.+-+-.--
T Consensus       198 r~~~gdWd~AlkLvd~~~~~~vie~-------~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~A  269 (531)
T COG3898         198 RCAAGDWDGALKLVDAQRAAKVIEK-------DVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVA  269 (531)
T ss_pred             HHhcCChHHHHHHHHHHHHHHhhch-------hhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHH
Confidence            4566777777777766555422111       12223334444444444433 458899999999999999999999999


Q ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          408 AQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       408 g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      +.+|+..|+..++-..++.+-+.+|.
T Consensus       270 Aralf~d~~~rKg~~ilE~aWK~ePH  295 (531)
T COG3898         270 ARALFRDGNLRKGSKILETAWKAEPH  295 (531)
T ss_pred             HHHHHhccchhhhhhHHHHHHhcCCC
Confidence            99999999999999999999888875

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=88.35  E-value=5  Score=37.15  Aligned_cols=85  Identities=15%  Similarity=0.105  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC------CHHHHHHHH
Q 013755          335 ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH------NVKALYRRA  408 (437)
Q Consensus       335 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~------~~~a~~~~g  408 (437)
                      ...+.++.+|+........         ..+...+...+|.-|++.|+|++|+++++.+....-.      ....+..+.
T Consensus       155 ~~iI~lL~~A~~~f~~~~~---------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~  225 (247)
T PF11817_consen  155 KLIIELLEKAYEQFKKYGQ---------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLL  225 (247)
T ss_pred             HHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            4556667777766543321         2334566778999999999999999999999754321      247788899


Q ss_pred             HHHHHhccHHHHHHHHHHHH
Q 013755          409 QAYMEIADLILAELDIKKAI  428 (437)
Q Consensus       409 ~~~~~lg~~~~A~~~~~~al  428 (437)
                      .|+..+|+.+..+...-+.+
T Consensus       226 ~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  226 ECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHhCCHHHHHHHHHHHh
Confidence            99999999998887655443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=87.82  E-value=4.2  Score=36.75  Aligned_cols=84  Identities=17%  Similarity=0.025  Sum_probs=51.1

Q ss_pred             HHHHHHHHhhHHHhCCc-------HHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHH
Q 013755          317 AAGRKKEEGNLLFKNGK-------YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL  389 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~-------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~  389 (437)
                      .+..+...|-.|-..++       +.+|+..|.+|+.........         .-...+.+-+|..+.++|++++|++.
T Consensus       117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~---------~~~~~l~YLigeL~rrlg~~~eA~~~  187 (214)
T PF09986_consen  117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEG---------MDEATLLYLIGELNRRLGNYDEAKRW  187 (214)
T ss_pred             HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCC---------chHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            34444444444444555       455666666666543321110         01235678899999999999999999


Q ss_pred             HHHHHHhCCCCH-HHHHHHHH
Q 013755          390 CSKVLDCDCHNV-KALYRRAQ  409 (437)
Q Consensus       390 ~~~al~~~p~~~-~a~~~~g~  409 (437)
                      +.+++...-.+. ..+..+|.
T Consensus       188 fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  188 FSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHHcCCCCCCcHHHHHHHH
Confidence            999998643332 35555554

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=87.80  E-value=6.5  Score=41.65  Aligned_cols=110  Identities=15%  Similarity=0.043  Sum_probs=83.9

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCC-------CCC----hHHHHHHHhhhHHHhhhHHHHHHhccCHHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-------SFV----DDEQKLVKSLRVSCWLNSAACCLKLKDYQGA  386 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~-------~~~----~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A  386 (437)
                      +-.+.-.|......+..++|.+++.++++......       ..+    .+...-...++..++..++.+.+-+++|..|
T Consensus       301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a  380 (608)
T PF10345_consen  301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA  380 (608)
T ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence            34445557788888888899999999998765432       111    1233455677778888999999999999999


Q ss_pred             HHHHHHHHHhC---CC------CHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 013755          387 IELCSKVLDCD---CH------NVKALYRRAQAYMEIADLILAELDIKKA  427 (437)
Q Consensus       387 i~~~~~al~~~---p~------~~~a~~~~g~~~~~lg~~~~A~~~~~~a  427 (437)
                      ......+....   |.      .+..+|..|..+...|+.+.|+..|.+.
T Consensus       381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~  430 (608)
T PF10345_consen  381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKP  430 (608)
T ss_pred             HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhh
Confidence            99888777653   22      3678999999999999999999999833

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.80  E-value=4.6  Score=29.86  Aligned_cols=34  Identities=21%  Similarity=0.124  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhc
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~  349 (437)
                      ..+..+...|..+=+.|+|++|+.+|+.|++.+-
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~   37 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLI   37 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            4577788899999999999999999999999864

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=87.49  E-value=1.6  Score=27.05  Aligned_cols=32  Identities=19%  Similarity=0.101  Sum_probs=25.2

Q ss_pred             HhhhHHHHHHhccCHHHHHHH--HHHHHHhCCCC
Q 013755          369 CWLNSAACCLKLKDYQGAIEL--CSKVLDCDCHN  400 (437)
Q Consensus       369 ~~~nla~~~~~~~~~~~Ai~~--~~~al~~~p~~  400 (437)
                      .++.+|..+..+|++++|+..  |.-+..+++.|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            366789999999999999999  54888888764

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=87.46  E-value=11  Score=36.94  Aligned_cols=95  Identities=17%  Similarity=0.031  Sum_probs=69.8

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      .+...+....-.|+|+.|.+.|+..+.. |..              +..-+..|=..-.++|..+.|++|.+++-+..|.
T Consensus       122 IhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEt--------------RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~  186 (531)
T COG3898         122 IHLLEAQAALLEGDYEDARKKFEAMLDD-PET--------------RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ  186 (531)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHhcC-hHH--------------HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC
Confidence            4445667777889999999998876642 211              1111111222334689999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755          400 NVKALYRRAQAYMEIADLILAELDIKKAIE  429 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~  429 (437)
                      -+-+..-.=......|+|+.|++..+....
T Consensus       187 l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         187 LPWAARATLEARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             CchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            998888877888999999999998876654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=87.39  E-value=11  Score=31.77  Aligned_cols=84  Identities=10%  Similarity=-0.086  Sum_probs=62.0

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ..+.+.........+.+++.......--+-|+...               +-.--|..+...|+|.+|+..++.+.+-.+
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e---------------~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~   75 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKE---------------LDMFDGWLLIARGNYDEAARILRELLSSAG   75 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc---------------cchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence            34444455555578888887776655555566543               345678889999999999999999988887


Q ss_pred             CCHHHHHHHHHHHHHhccH
Q 013755          399 HNVKALYRRAQAYMEIADL  417 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~lg~~  417 (437)
                      ..+-+--.++.|+..+|+.
T Consensus        76 ~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        76 APPYGKALLALCLNAKGDA   94 (153)
T ss_pred             CchHHHHHHHHHHHhcCCh
Confidence            7777767788898888874

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=87.21  E-value=7.3  Score=38.24  Aligned_cols=66  Identities=18%  Similarity=0.139  Sum_probs=52.4

Q ss_pred             HHhhhHHHHHHh---ccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHhCCC
Q 013755          368 SCWLNSAACCLK---LKDYQGAIELCSKVL-DCDCHNVKALYRRAQAYMEI---------ADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       368 ~~~~nla~~~~~---~~~~~~Ai~~~~~al-~~~p~~~~a~~~~g~~~~~l---------g~~~~A~~~~~~al~l~P~  433 (437)
                      .+....|.++.+   .|+.++|++.+..++ ...+.++..+...|.+|..+         ...++|+.+|.++.+++|+
T Consensus       180 ~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~  258 (374)
T PF13281_consen  180 NIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD  258 (374)
T ss_pred             HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence            334556777777   999999999999955 45667789999999988654         2478899999999999875

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=87.10  E-value=4  Score=43.47  Aligned_cols=103  Identities=17%  Similarity=0.086  Sum_probs=67.3

Q ss_pred             hHHHhCCcHHHHHHHHHHHHHhhc------cCCCCCh----HHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH--
Q 013755          326 NLLFKNGKYERAGKKYNKAADCVS------EDGSFVD----DEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV--  393 (437)
Q Consensus       326 ~~~~~~g~~~~A~~~y~~al~~~~------~~~~~~~----~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a--  393 (437)
                      ......|-.++|..+|+++-+.+-      .....++    .+.+ -+-.+...|+|.|.-+...++.+.|+++|+++  
T Consensus       808 vLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~-DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~  886 (1416)
T KOG3617|consen  808 VLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETK-DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGV  886 (1416)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhc-cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCC
Confidence            345566777888888877755321      1111110    0001 11223466889999888999999999999974  


Q ss_pred             --------HHhCCCC----------HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755          394 --------LDCDCHN----------VKALYRRAQAYMEIADLILAELDIKKAIE  429 (437)
Q Consensus       394 --------l~~~p~~----------~~a~~~~g~~~~~lg~~~~A~~~~~~al~  429 (437)
                              |.-+|..          .+.|-..|+-+...|+.+.|+..|..|-.
T Consensus       887 hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D  940 (1416)
T KOG3617|consen  887 HAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD  940 (1416)
T ss_pred             hHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence                    3334433          35566678888899999999999998864

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.80  E-value=7.5  Score=28.95  Aligned_cols=67  Identities=16%  Similarity=0.039  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccC------CCCChHHHHHHHhhhHHHhhhHHHHHHhc
Q 013755          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED------GSFVDDEQKLVKSLRVSCWLNSAACCLKL  380 (437)
Q Consensus       314 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~------~~~~~~~~~~~~~~~~~~~~nla~~~~~~  380 (437)
                      -.+.+....+.|..+=..|+.++|+.+|++++..+...      .....++|+....++-..-.+++.+-.++
T Consensus         4 ~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL   76 (79)
T cd02679           4 YYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL   76 (79)
T ss_pred             HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35678888899999999999999999999999976432      12234667777777766666666655443

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=86.78  E-value=1.3  Score=43.90  Aligned_cols=59  Identities=15%  Similarity=0.204  Sum_probs=46.9

Q ss_pred             hhhHHHHHHhccCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755          370 WLNSAACCLKLKDYQGAIELCSKVLDCD---------CHNVKALYRRAQAYMEIADLILAELDIKKAIE  429 (437)
Q Consensus       370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~---------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~  429 (437)
                      +.-|..+|..+|+|..|++..+- ++++         +.+...+|..|.||+.+++|.+|++.|..+|-
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566778889999999987654 2322         23457799999999999999999999998874

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=86.77  E-value=6.4  Score=40.37  Aligned_cols=98  Identities=15%  Similarity=-0.056  Sum_probs=72.1

Q ss_pred             HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHH-HHHHHHHHHhCCCCHH
Q 013755          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGA-IELCSKVLDCDCHNVK  402 (437)
Q Consensus       324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A-i~~~~~al~~~p~~~~  402 (437)
                      ....+...+....|......++..++..               +.++.||+.+....+..-.+ ...+..+....|+|..
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~  137 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPEN---------------CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAE  137 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCccc---------------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHH
Confidence            3444455566666666677777666543               46788998887776665544 4555559999999987


Q ss_pred             HHHHH------HHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          403 ALYRR------AQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       403 a~~~~------g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ++..+      +.....+++..++...+.++..+.|.++.
T Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~  177 (620)
T COG3914         138 FLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR  177 (620)
T ss_pred             HHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence            76666      88888899999999999999999998753

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=86.65  E-value=0.8  Score=25.96  Aligned_cols=24  Identities=25%  Similarity=0.087  Sum_probs=21.2

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHH
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCS  391 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~  391 (437)
                      .+++++|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            357899999999999999998775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=86.61  E-value=3.7  Score=29.51  Aligned_cols=35  Identities=20%  Similarity=0.217  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhc
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~  349 (437)
                      +..+..+...|..+=+.|+|++|+.+|.+|+..+-
T Consensus         2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~   36 (69)
T PF04212_consen    2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLM   36 (69)
T ss_dssp             HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            35677788899999999999999999999999753

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=86.50  E-value=12  Score=36.84  Aligned_cols=101  Identities=15%  Similarity=0.001  Sum_probs=65.1

Q ss_pred             HHHHHHhhHHHh---CCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh---------ccCHHHH
Q 013755          319 GRKKEEGNLLFK---NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK---------LKDYQGA  386 (437)
Q Consensus       319 ~~~~~~g~~~~~---~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~---------~~~~~~A  386 (437)
                      ......|.++-+   .|+.++|++.+..++.......              ...+.-+|.+|-.         ....++|
T Consensus       180 ~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~--------------~d~~gL~GRIyKD~~~~s~~~d~~~ldkA  245 (374)
T PF13281_consen  180 NIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD--------------PDTLGLLGRIYKDLFLESNFTDRESLDKA  245 (374)
T ss_pred             HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC--------------hHHHHHHHHHHHHHHHHcCccchHHHHHH
Confidence            334456666666   8999999999999765533211              1223333333321         2346778


Q ss_pred             HHHHHHHHHhCCCCH---------------------------------------------HHHHHHHHHHHHhccHHHHH
Q 013755          387 IELCSKVLDCDCHNV---------------------------------------------KALYRRAQAYMEIADLILAE  421 (437)
Q Consensus       387 i~~~~~al~~~p~~~---------------------------------------------~a~~~~g~~~~~lg~~~~A~  421 (437)
                      +..|.++.+++|+.-                                             ..+--++.+..-.+++++|.
T Consensus       246 i~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~  325 (374)
T PF13281_consen  246 IEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAI  325 (374)
T ss_pred             HHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHH
Confidence            888888877776531                                             11233556677788999999


Q ss_pred             HHHHHHHHhCCC
Q 013755          422 LDIKKAIEADPQ  433 (437)
Q Consensus       422 ~~~~~al~l~P~  433 (437)
                      +.+++++++.|.
T Consensus       326 ~a~e~~~~l~~~  337 (374)
T PF13281_consen  326 QAAEKAFKLKPP  337 (374)
T ss_pred             HHHHHHhhcCCc
Confidence            999999988775

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.34  E-value=7.8  Score=40.51  Aligned_cols=100  Identities=18%  Similarity=0.068  Sum_probs=72.3

Q ss_pred             HHHHHHHhhHHHhC-----CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc-----CHHHHH
Q 013755          318 AGRKKEEGNLLFKN-----GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-----DYQGAI  387 (437)
Q Consensus       318 ~~~~~~~g~~~~~~-----g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-----~~~~Ai  387 (437)
                      +......|..++.-     ++.+.|+..|+.|......          ........+.+.+|.||.+..     ++..|+
T Consensus       244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~----------~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~  313 (552)
T KOG1550|consen  244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKK----------AATKGLPPAQYGLGRLYLQGLGVEKIDYEKAL  313 (552)
T ss_pred             hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH----------HHhhcCCccccHHHHHHhcCCCCccccHHHHH
Confidence            34444555555543     6899999999999872000          000012345788999999843     788899


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhc---cHHHHHHHHHHHHH
Q 013755          388 ELCSKVLDCDCHNVKALYRRAQAYMEIA---DLILAELDIKKAIE  429 (437)
Q Consensus       388 ~~~~~al~~~p~~~~a~~~~g~~~~~lg---~~~~A~~~~~~al~  429 (437)
                      .++.++-.+.  ++.+.|++|.++..-.   ++..|..+|..|..
T Consensus       314 ~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~  356 (552)
T KOG1550|consen  314 KLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK  356 (552)
T ss_pred             HHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence            9999998884  7889999999998766   57899999998875

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=86.00  E-value=3.1  Score=38.89  Aligned_cols=62  Identities=16%  Similarity=0.086  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 013755          337 AGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYME  413 (437)
Q Consensus       337 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~  413 (437)
                      |.++|.+|+.+.|...               ..|+.+|..+...++.-.|+-+|-+++...-..+.|.-++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G---------------~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNG---------------NPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBS---------------HHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCC---------------CcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            7889999999999875               6699999999999999999999999997765568888888887777

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=85.88  E-value=14  Score=39.16  Aligned_cols=106  Identities=13%  Similarity=0.109  Sum_probs=79.6

Q ss_pred             HHHHHHHHHhhHHH-hCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLF-KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       316 ~~~~~~~~~g~~~~-~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      .++......|..++ ...+++.|..+..+++.+... ..        ..+++..+.+-++.++.+.+... |+..+++++
T Consensus        57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~--------~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I  126 (608)
T PF10345_consen   57 QEARVRLRLASILLEETENLDLAETYLEKAILLCER-HR--------LTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAI  126 (608)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cc--------hHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence            45777788888888 678999999999999998765 32        23455666677799998888877 999999999


Q ss_pred             HhCCC----CHHHHHHHHHHHH--HhccHHHHHHHHHHHHHhC
Q 013755          395 DCDCH----NVKALYRRAQAYM--EIADLILAELDIKKAIEAD  431 (437)
Q Consensus       395 ~~~p~----~~~a~~~~g~~~~--~lg~~~~A~~~~~~al~l~  431 (437)
                      +...+    ...-.|++-++..  ..+++..|++.++....+.
T Consensus       127 ~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a  169 (608)
T PF10345_consen  127 EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA  169 (608)
T ss_pred             HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence            87544    3444555543322  2369999999999988765

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.76  E-value=6.8  Score=28.84  Aligned_cols=36  Identities=28%  Similarity=0.227  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhcc
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~  350 (437)
                      .+.+..+..+|..+=+.|+|.+|+.+|++|++.+-.
T Consensus         3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q   38 (75)
T cd02682           3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ   38 (75)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            345777888999999999999999999999987643

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=85.59  E-value=2.7  Score=35.18  Aligned_cols=52  Identities=27%  Similarity=0.179  Sum_probs=43.1

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLIL  419 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~  419 (437)
                      ...+..|...+..|+|.-|+..++.++..+|+|..+...++.+|..++.-.+
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            4466788888999999999999999999999999999999999999987544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=85.57  E-value=3.4  Score=43.99  Aligned_cols=63  Identities=17%  Similarity=0.140  Sum_probs=49.1

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHh---------------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDC---------------------DCHNVKALYRRAQAYMEIADLILAELDIKK  426 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~---------------------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~  426 (437)
                      .+|.--|.-....|+.+.|+.+|..|-..                     ...+--|.|.+|.-|...|++.+|+..|.+
T Consensus       913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            45566677777788888888888876433                     344567889999999999999999998887


Q ss_pred             HHHh
Q 013755          427 AIEA  430 (437)
Q Consensus       427 al~l  430 (437)
                      |-.+
T Consensus       993 Aqaf  996 (1416)
T KOG3617|consen  993 AQAF  996 (1416)
T ss_pred             HHHH
Confidence            7543

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.43  E-value=4.2  Score=29.98  Aligned_cols=35  Identities=17%  Similarity=-0.018  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhc
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~  349 (437)
                      +..+..+..+|...=..|+|++|+.+|.++|+.+-
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~   37 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFV   37 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            45678888899999999999999999999999763

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.32  E-value=6  Score=29.30  Aligned_cols=34  Identities=21%  Similarity=0.193  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhc
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~  349 (437)
                      ..+..+..+|..+=+.|+|++|+.+|.++|..+-
T Consensus         4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~   37 (77)
T cd02683           4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLM   37 (77)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            4567788889999999999999999999999764

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=84.94  E-value=12  Score=36.86  Aligned_cols=107  Identities=17%  Similarity=0.051  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhcc-CCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHH
Q 013755          312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC  390 (437)
Q Consensus       312 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~  390 (437)
                      .+...--..++.....+-++|-|..|++..+-.+.++|. ++              .-+++-+=...++.++|+--++.+
T Consensus        97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP--------------~g~ll~ID~~ALrs~~y~~Li~~~  162 (360)
T PF04910_consen   97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP--------------LGVLLFIDYYALRSRQYQWLIDFS  162 (360)
T ss_pred             ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc--------------chhHHHHHHHHHhcCCHHHHHHHH
Confidence            344455667777888899999999999999999999998 54              244555666677889998888888


Q ss_pred             HHHHHhCCC-----CHHHHHHHHHHHHHhccH---------------HHHHHHHHHHHHhCC
Q 013755          391 SKVLDCDCH-----NVKALYRRAQAYMEIADL---------------ILAELDIKKAIEADP  432 (437)
Q Consensus       391 ~~al~~~p~-----~~~a~~~~g~~~~~lg~~---------------~~A~~~~~~al~l~P  432 (437)
                      +........     -+..-|.++.|++.+++-               ++|...+.+|+..-|
T Consensus       163 ~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP  224 (360)
T PF04910_consen  163 ESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP  224 (360)
T ss_pred             HhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence            876663221     346778899999999998               899999999998766

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.90  E-value=18  Score=37.14  Aligned_cols=85  Identities=14%  Similarity=0.174  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhh--ccCCC----CChHHHHHHHhhhHHHhhhHHHHHHhccCHHHH
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV--SEDGS----FVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGA  386 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~--~~~~~----~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A  386 (437)
                      ..+..+...+.+|..-...+-.++|+-.+.+|++-.  +....    +...+.   +.+. .+++.--.-+.+.|.|.-|
T Consensus       286 sLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eN---R~Fy-L~l~r~m~~l~~RGC~rTA  361 (665)
T KOG2422|consen  286 SLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPEN---RQFY-LALFRYMQSLAQRGCWRTA  361 (665)
T ss_pred             HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhh---HHHH-HHHHHHHHHHHhcCChHHH
Confidence            445556666666666666666666666666666531  11100    000010   1111 1122222344568999999


Q ss_pred             HHHHHHHHHhCCC-CH
Q 013755          387 IELCSKVLDCDCH-NV  401 (437)
Q Consensus       387 i~~~~~al~~~p~-~~  401 (437)
                      .++|.-.+.++|. ++
T Consensus       362 ~E~cKlllsLdp~eDP  377 (665)
T KOG2422|consen  362 LEWCKLLLSLDPSEDP  377 (665)
T ss_pred             HHHHHHHhhcCCcCCc
Confidence            9999999999998 54

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=84.75  E-value=1.7  Score=28.34  Aligned_cols=25  Identities=36%  Similarity=0.417  Sum_probs=20.4

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHH
Q 013755          405 YRRAQAYMEIADLILAELDIKKAIE  429 (437)
Q Consensus       405 ~~~g~~~~~lg~~~~A~~~~~~al~  429 (437)
                      +.+|.+|..+|+++.|+..++..+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5678888888888888888888874

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=84.60  E-value=8.1  Score=35.72  Aligned_cols=25  Identities=24%  Similarity=0.073  Sum_probs=19.7

Q ss_pred             HHhCCcHHHHHHHHHHHHHhhccCC
Q 013755          328 LFKNGKYERAGKKYNKAADCVSEDG  352 (437)
Q Consensus       328 ~~~~g~~~~A~~~y~~al~~~~~~~  352 (437)
                      +++..+-.+|+++-..++.++|.+.
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpAnY   77 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPANY   77 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcccc
Confidence            4556677889999999999988654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=84.49  E-value=2.8  Score=39.34  Aligned_cols=55  Identities=18%  Similarity=0.170  Sum_probs=48.5

Q ss_pred             hHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 013755          372 NSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKK  426 (437)
Q Consensus       372 nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~  426 (437)
                      .-+.-....+++.+|...+..++..+|.+..+...++.||...|+.+.|...+..
T Consensus       139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            3455566789999999999999999999999999999999999999988877654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=83.60  E-value=8.9  Score=32.75  Aligned_cols=69  Identities=14%  Similarity=-0.049  Sum_probs=59.3

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ...+..+..+-.+.++..++...+.-.--+.|+.+..-..-|..+...|+|.+|+..|+.+..-.|..+
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p   78 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP   78 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence            455667777788888999999988888889999999999999999999999999999999876666543

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.54  E-value=7.1  Score=28.66  Aligned_cols=35  Identities=20%  Similarity=0.174  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhc
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~  349 (437)
                      +..+..+..+|...=..|+|++|+.+|.+|+..+-
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~   37 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFM   37 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            45678888999999999999999999999999763

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=83.25  E-value=23  Score=38.35  Aligned_cols=110  Identities=15%  Similarity=-0.033  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      .....-....+-.+....+|.+|-.+..++....+......      ...+.+...--.|.+....++++.|++.++.++
T Consensus       412 ~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~------~~~l~ae~~aL~a~val~~~~~e~a~~lar~al  485 (894)
T COG2909         412 ASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSR------QGDLLAEFQALRAQVALNRGDPEEAEDLARLAL  485 (894)
T ss_pred             hhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccc------hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            34444455677778889999999999999888776532111      112223333345667778899999999999999


Q ss_pred             HhCCCC-----HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          395 DCDCHN-----VKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       395 ~~~p~~-----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      ..-|.+     .-++...|.+.+-+|++++|+...+.+.++
T Consensus       486 ~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~  526 (894)
T COG2909         486 VQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM  526 (894)
T ss_pred             HhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence            987765     366788899999999999999999988876

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=82.44  E-value=5.7  Score=44.46  Aligned_cols=109  Identities=14%  Similarity=0.055  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      +.+..+...+..+.+.+++++|+..-.+|.-+.......+..       -....|.|++...+..++...|+..+.+++.
T Consensus       971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~-------~t~~~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen  971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP-------NTKLAYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred             hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH-------HHHHHhhHHHHHHHhccCccchhhhHHHHHH
Confidence            345667788889999999999999988887765433222211       1245688899888888899999999998876


Q ss_pred             h--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          396 C--------DCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       396 ~--------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      +        .|.-+....+++..+..+++++.|+.+++.|+.+.
T Consensus      1044 l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1044 LKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             hhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            5        34444556778888889999999999999998753

>TIGR02710 CRISPR-associated protein, TIGR02710 family

Probab=82.10  E-value=18  Score=35.61  Aligned_cols=63  Identities=6%  Similarity=-0.023  Sum_probs=43.8

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh--ccCHHHHHHHHH
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK--LKDYQGAIELCS  391 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--~~~~~~Ai~~~~  391 (437)
                      ......+..+|+..+|..|...|.+++........          .-....+.+++.+|..  .-+|++|.++++
T Consensus       131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~----------~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~  195 (380)
T TIGR02710       131 NTEQGYARRAINAFDYLFAHARLETLLRRLLSAVN----------HTFYEAMIKLTRAYLHWDRFEHEEALDYLN  195 (380)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhh----------hhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence            44455777899999999999999999987432110          1123445566666554  667888888887

Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=81.85  E-value=6.4  Score=31.33  Aligned_cols=62  Identities=13%  Similarity=0.152  Sum_probs=48.2

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcc-----------HHHHHHHHHHHHHhCCCC
Q 013755          373 SAACCLKLKDYQGAIELCSKVLDCDCHNV---KALYRRAQAYMEIAD-----------LILAELDIKKAIEADPQN  434 (437)
Q Consensus       373 la~~~~~~~~~~~Ai~~~~~al~~~p~~~---~a~~~~g~~~~~lg~-----------~~~A~~~~~~al~l~P~n  434 (437)
                      +|.-++..|++-+|++..+..+...+++.   -.+...|.++..+..           .-.|++.|.++..+.|..
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~   77 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS   77 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence            57788999999999999999999988776   445556777766543           345788888888887754

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.80  E-value=12  Score=27.56  Aligned_cols=36  Identities=22%  Similarity=0.179  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhcc
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~  350 (437)
                      +..+..+..+|...=+.|+|++|..+|..+++.+-.
T Consensus         3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~   38 (75)
T cd02677           3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            356777888888888999999999999999997643

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=81.63  E-value=15  Score=35.37  Aligned_cols=53  Identities=8%  Similarity=0.045  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          383 YQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       383 ~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .+..+..+++||+.+|++...+..+=.+..++.+-++..+-+++++..+|++.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~   99 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSP   99 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCh
Confidence            56778899999999999999998888888889999998999999999998764

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=81.55  E-value=10  Score=33.76  Aligned_cols=53  Identities=19%  Similarity=0.135  Sum_probs=43.7

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhccHHHHH
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCH----NVKALYRRAQAYMEIADLILAE  421 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~----~~~a~~~~g~~~~~lg~~~~A~  421 (437)
                      .+.+.||.-|. ..+.++|+..+.++|++.+.    |+..+..++.+++.+++++.|-
T Consensus       142 elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  142 ELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            45666776565 67889999999999998543    5899999999999999999884

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.88  E-value=3.5  Score=30.37  Aligned_cols=35  Identities=20%  Similarity=0.052  Sum_probs=30.2

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhcc
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~  350 (437)
                      ..+..+..+|...=..|+|++|+++|.+|++.+-.
T Consensus         4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            46777888888888999999999999999998744

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.80  E-value=9.5  Score=28.08  Aligned_cols=43  Identities=14%  Similarity=-0.007  Sum_probs=23.9

Q ss_pred             hhhHHHHHHhccCHHHHHHHHHH-------HHHhCCCCHHHHHHHHHHHH
Q 013755          370 WLNSAACCLKLKDYQGAIELCSK-------VLDCDCHNVKALYRRAQAYM  412 (437)
Q Consensus       370 ~~nla~~~~~~~~~~~Ai~~~~~-------al~~~p~~~~a~~~~g~~~~  412 (437)
                      +..+|.-+-+.|++.+|+.+|++       ++...|+++.....+..+..
T Consensus         9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~e   58 (75)
T cd02682           9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINE   58 (75)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            44445555555555555555555       55567888775554444433

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=80.72  E-value=12  Score=35.39  Aligned_cols=86  Identities=20%  Similarity=0.075  Sum_probs=50.0

Q ss_pred             hHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh----ccCHHHHHHHHHHHHHhCCCCH
Q 013755          326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK----LKDYQGAIELCSKVLDCDCHNV  401 (437)
Q Consensus       326 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~~~~~~Ai~~~~~al~~~p~~~  401 (437)
                      ...+..++|..|+..|.++-....                 .....+++.+|..    ..++.+|+..|.++.+  ..++
T Consensus        49 ~~~~~~~~~~~a~~~~~~a~~~~~-----------------~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~  109 (292)
T COG0790          49 AGSAYPPDYAKALKSYEKAAELGD-----------------AAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLA  109 (292)
T ss_pred             ccccccccHHHHHHHHHHhhhcCC-----------------hHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccH
Confidence            334455666777776666655211                 1335556666554    3446666666663333  3566


Q ss_pred             HHHHHHHHHHHH----hccHHHHHHHHHHHHHh
Q 013755          402 KALYRRAQAYME----IADLILAELDIKKAIEA  430 (437)
Q Consensus       402 ~a~~~~g~~~~~----lg~~~~A~~~~~~al~l  430 (437)
                      .+.+++|..|..    ..++.+|..+|++|.+.
T Consensus       110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~  142 (292)
T COG0790         110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKL  142 (292)
T ss_pred             HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc
Confidence            677777777665    34667777777776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	437
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		1e-49
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		3e-49
3jym_A	377	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		2e-47
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		3e-47
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		1e-32
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		2e-30
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		8e-26
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		1e-24
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		3e-21
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		5e-16
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		6e-16
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		8e-07
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		3e-15
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		3e-15
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		3e-15
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		9e-04
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		1e-14
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		1e-14
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		1e-14
2y78_A	133	Crystal Structure Of Bpss1823, A Mip-Like Chaperone		2e-14
4dz3_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		2e-14
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-14
2ke0_A	117	Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso		2e-14
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		2e-14
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		3e-14
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		4e-06
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		6e-14
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		3e-07
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		7e-14
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		3e-07
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		7e-14
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		8e-14
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		3e-07
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		9e-14
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		2e-07
1yat_A	113	Improved Calcineurin Inhibition By Yeast Fkbp12-Dru		2e-13
4dz2_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		5e-12
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		8e-12
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		1e-07
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		8e-12
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		1e-07
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		2e-11
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		2e-11
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		1e-05
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		4e-11
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		5e-11
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		6e-11
3uqi_A	108	Crystallographic Structure Of Fkbp12 From Aedes Aeg		9e-11
1jvw_A	167	Trypanosoma Cruzi Macrophage Infectivity Potentiato		1e-10
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		1e-10
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		2e-10
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		2e-10
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		3e-10
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		3e-10
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		3e-10
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		3e-10
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		7e-10
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		7e-10
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		1e-09
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		2e-09
1q6u_A	245	Crystal Structure Of Fkpa From Escherichia Coli Len		2e-09
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		2e-09
1u79_A	129	Crystal Structure Of Atfkbp13 Length = 129		2e-09
1q6h_A	224	Crystal Structure Of A Truncated Form Of Fkpa From		2e-09
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		2e-09
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		3e-09
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		1e-08
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		2e-06
1fd9_A	213	Crystal Structure Of The Macrophage Infectivity Pot		8e-06
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-05
4dip_A	125	Crystal Structure Of Human Peptidyl-Prolyl Cis-Tran		2e-05
2uz5_A	137	Solution Structure Of The Fkbp-Domain Of Legionella		2e-05
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		3e-05
4dt4_A	169	Crystal Structure Of The Ppiase-Chaperone Slpa With		1e-04
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		2e-04
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-04
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		4e-04

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  194 bits (492), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 132/392 (33%), Positives = 200/392 (51%), Gaps = 37/392 (9%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD V +HY G L +G KFDS+ DR +P  F +G GQV   
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 89
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDG 163
            D G+ TMKK E  +       E  +G  G    +P N+ + FEVEL+ +    DL +DG
Sbjct: 90  WDIGVATMKKGE--ICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF-KGEDLLEDG 146
Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           GI+++   +GE  ++P +   V +  +   G           G  F  +DV++       
Sbjct: 147 GIIRRTKRRGEGYSNPNEGARVQIHLEGRCG-----------GRVFDCRDVAF------- 188
Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
           TV E  G D + P+           G+D+    M++EE  I+ +   YGFG  EA +   
Sbjct: 189 TVGE--GEDHDIPI-----------GIDKALEKMQREEQCILHLGPRYGFG--EAGKPKF 233
Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNK 343
            I   A+L YEV +  F K K  WEM+ + K+E A   KE+G + FK GKY +A  +Y K
Sbjct: 234 GIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGK 293
Query: 344 AADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA 403
               +  +    + E K  +S  ++ +LN A C LKL++Y  A+E C K L  D  N K 
Sbjct: 294 IVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKG 353
Query: 404 LYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
           LYRR +A + + +   A+ D +K +E +PQN+
Sbjct: 354 LYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  192 bits (489), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 132/392 (33%), Positives = 201/392 (51%), Gaps = 37/392 (9%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV   
Sbjct: 30  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 89
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDG 163
            D G+ TMK+ E  +       E  +G  G    +P N+ + FE+EL+ +    DL +DG
Sbjct: 90  WDIGVATMKRGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF-KGEDLFEDG 146
Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           GI+++   KGE  ++P +   V +  +   G           G  F  +DV++       
Sbjct: 147 GIIRRTKRKGEGYSNPNEGATVEIHLEGRCG-----------GRMFDCRDVAF------- 188
Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
           TV E  G D + P+           G+D+    M++EE  I+ +   YGFG  EA +   
Sbjct: 189 TVGE--GEDHDIPI-----------GIDKALEKMQREEQCILYLGPRYGFG--EAGKPKF 233
Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNK 343
            I   A+L YEV +  F K K  WEM+ + K+E A   KE+G + FK GKY +A  +Y K
Sbjct: 234 GIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGK 293
Query: 344 AADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA 403
               +  +    + E K  +S  ++ +LN A C LKL++Y  A+E C K L  D  N K 
Sbjct: 294 IVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKG 353
Query: 404 LYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
           LYRR +A + + +   A+ D +K +E +PQN+
Sbjct: 354 LYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385

>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377

Iteration: 1
 Score =  186 bits (472), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/337 (39%), Positives = 184/337 (54%), Gaps = 55/337 (16%)
Query: 35  LKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTF 94
           +KVGEE  +G  G+KKKLLK G  WDTPE GDEV +HY GTLLDG KFDS+RDR D   F
Sbjct: 16  MKVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKF 75
Query: 95  KLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
           KLG GQV  G D GI TMKK E A+  FT+P EL +G  G   ++P N+ +QF+VEL+SW
Sbjct: 76  KLGQGQVIKGWDQGIKTMKKGENAL--FTIPPELAYGESGSPPTIPANATLQFDVELLSW 133
Query: 154 ITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKD 213
            +V D++KDGGI KKIL++G++  +P D DEV VKY+  L DGT+V+K+  EGVEF +KD
Sbjct: 134 TSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS--EGVEFTVKD 191
Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
                                           +   L +   TMKK E  ++ +  +YGF
Sbjct: 192 ------------------------------GHLCPALAKAVKTMKKGEKVLLAVKPQYGF 221
Query: 274 GNV--EAKRDLATIPSCAKLYYEVEMMDF----------------IKEKVPWEMNNQGKI 315
           G +   A  +   +P  A L  ++E++ +                +KE   +E  N+G +
Sbjct: 222 GEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAV 281
Query: 316 EAA--GRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350
                  K ++G +  K G  E+   ++    + V E
Sbjct: 282 VTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIE 318

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score =  186 bits (471), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 132/336 (39%), Positives = 183/336 (54%), Gaps = 55/336 (16%)
Query: 36  KVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFK 95
           KVGEE  +G  G+KKKLLK G  WDTPE GDEV +HY GTLLDG KFDS+RDR D   FK
Sbjct: 1   KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 60
Query: 96  LGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWI 154
           LG GQV  G D GI TMKK E A+  FT+P EL +G  G   ++P N+ +QF+VEL+SW 
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGENAL--FTIPPELAYGESGSPPTIPANATLQFDVELLSWT 118
Query: 155 TVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
           +V D++KDGGI KKIL++G++  +P D DEV VKY+  L DGT+V+K+  EGVEF +KD 
Sbjct: 119 SVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS--EGVEFTVKD- 175
Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
                                          +   L +   TMKK E  ++ +  +YGFG
Sbjct: 176 -----------------------------GHLCPALAKAVKTMKKGEKVLLAVKPQYGFG 206
Query: 275 NV--EAKRDLATIPSCAKLYYEVEMMDF----------------IKEKVPWEMNNQGKIE 316
            +   A  +   +P  A L  ++E++ +                +KE   +E  N+G + 
Sbjct: 207 EMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVV 266
Query: 317 AA--GRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350
                 K ++G +  K G  E+   ++    + V E
Sbjct: 267 TVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIE 302

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/277 (32%), Positives = 143/277 (51%), Gaps = 33/277 (11%)
Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           + +DGGI+++I  +GE  A P +              G +V    E  +E Y KD  +  
Sbjct: 21  MEEDGGIIRRIQTRGEGYAKPNE--------------GAIV----EVALEGYYKDKLFDQ 62
Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           R     + E +  D             +  GL+R    M+K E +IV +   Y FG+V  
Sbjct: 63  RELRFEIGEGENLD-------------LPYGLERAIQRMEKGEHSIVYLKPSYAFGSV-- 107
Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
            ++   IP  A+L YE+ +  F K K  WEMN++ K+E +   KE G + FK GKY++A 
Sbjct: 108 GKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQAL 167
Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398
            +Y K    +  + SF ++E +  ++LR++  LN A C LKL+ +  AIE C+K L+ D 
Sbjct: 168 LQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227
Query: 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
           +N K L+RR +A++ + D  LA  D +K ++  P N+
Sbjct: 228 NNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNK 264

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 140/277 (50%), Gaps = 33/277 (11%)
Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           + +DGGI+++I  +GE  A P +              G +V    E  +E Y KD  +  
Sbjct: 21  MEEDGGIIRRIQTRGEGYAKPNE--------------GAIV----EVALEGYYKDKLFDQ 62
Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           R     + E +  D             +  GL+R     +K E +IV +   Y FG+V  
Sbjct: 63  RELRFEIGEGENLD-------------LPYGLERAIQRXEKGEHSIVYLKPSYAFGSV-- 107
Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAG 338
            ++   IP  A+L YE+ +  F K K  WE N++ K+E +   KE G + FK GKY++A 
Sbjct: 108 GKEKFQIPPNAELKYELHLKSFEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQAL 167
Query: 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398
            +Y K    +  + SF ++E +  ++LR++  LN A C LKL+ +  AIE C+K L+ D 
Sbjct: 168 LQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227
Query: 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
           +N K L RR +A++ + D  LA  D +K ++  P N+
Sbjct: 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score =  114 bits (286), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 130/267 (48%), Gaps = 37/267 (13%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV   
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDG 163
            D G+ TMKK E  +       E  +G  G    +P N+ + FE+EL+ +    DL +DG
Sbjct: 94  WDIGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF-KGEDLFEDG 150
Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           GI+++   KGE  ++P +   V +  +   G           G  F  +DV++       
Sbjct: 151 GIIRRTKRKGEGYSNPNEGATVEIHLEGRCG-----------GRMFDCRDVAF------- 192
Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
           TV E + +D             +  G+D+    M++EE  I+ +   YGFG  EA +   
Sbjct: 193 TVGEGEDHD-------------IPIGIDKALEKMQREEQCILYLGPRYGFG--EAGKPKF 237
Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMN 310
            I   A+L YEV +  F K K  WEM+
Sbjct: 238 GIEPNAELIYEVTLKSFEKAKESWEMD 264

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 127/267 (47%), Gaps = 39/267 (14%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   + P  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 50  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 109
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSWITVVDLS--K 161
            D  I TMK  E  V   T   E  +G  G    +PPN+ + FEVEL  +    DL+  +
Sbjct: 110 WDIAIATMKVGE--VCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF-KGEDLTEEE 166
Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
           DGGI+++I  +GE  A P               +G +V    E  +E Y KD  +  R  
Sbjct: 167 DGGIIRRIQTRGEGYAKP--------------NEGAIV----EVALEGYYKDKLFDQREL 208
Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
              + E +  D             +  GL+R    M+K E +IV +   Y FG+V   ++
Sbjct: 209 RFEIGEGENLD-------------LPYGLERAIQRMEKGEHSIVYLKPSYAFGSV--GKE 253
Query: 282 LATIPSCAKLYYEVEMMDFIKEKVPWE 308
              IP  A+L YE+ +  F K K  WE
Sbjct: 254 KFQIPPNAELKYELHLKSFEKAKESWE 280

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 7/208 (3%)
Query: 234 EQPLEFIT-DEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLY 292
           +QP+E +   E++ +AGL    A+MK  E A+V +  E  +G  E       +P  A L 
Sbjct: 92  QQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK-EGNFSFPNVPPMADLL 150
Query: 293 YEVEMMDF--IKE-KVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349
           YEVE++ F   KE K   +M  + +I AA R+K +GN LFK  K E A ++Y  A   + 
Sbjct: 151 YEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG 210
Query: 350 EDGSF--VDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRR 407
           +D  F      Q +  +++  C LN AAC +KLK Y  AI  C+ VL  +  N KAL+RR
Sbjct: 211 DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRR 270
Query: 408 AQAYMEIADLILAELDIKKAIEADPQNR 435
            +A  E+  +  A  D +KA +  P ++
Sbjct: 271 GKAKAELGQMDSARDDFRKAQKYAPDDK 298

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
Query: 42  GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQV 101
           G  ++ ++KK+L  G     P+ G +VT+HY G   DG +FDS+R R  P  F LG G+V
Sbjct: 20  GSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEV 79
Query: 102 ATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVS 152
             G D G+ TM   E A+  FT+P +L +G  G    +PP + + FEVEL++
Sbjct: 80  IKGWDQGVATMTLGEKAL--FTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 67/119 (56%), Gaps = 4/119 (3%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + K G     P  G  V +HYVGTL +GTKFDS+RDR D  +F LG G V  G
Sbjct: 13  DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKG 72
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSWITVVDLSKD 162
            D G+ TM K E A   FT+ S+  +G  G    +P  + + FEVEL  W +  D+S D
Sbjct: 73  WDLGVATMTKGEVA--EFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW-SAEDISPD 128

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           V Y+  LE+GT F+     G+Q   F      VI G D   ATM K E A  TI  +YG+
Sbjct: 38  VHYVGTLENGTKFDSSRDRGDQ-FSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGY 96
Query: 274 GNVEAKRDLATIPSCAKLYYEVEMMDFIKEKV 305
           G+  +      IP  A L +EVE+ ++  E +
Sbjct: 97  GDAGSP---PKIPGGATLIFEVELFEWSAEDI 125

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   + P  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 34  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 93
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSW 153
            D  I TMK  E  V   T   E  +G  G    +PPN+ + FEVEL  +
Sbjct: 94  WDIAIATMKVGE--VCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 141

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   + P  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 30  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 89
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSW 153
            D  I TMK  E  V   T   E  +G  G    +PPN+ + FEVEL  +
Sbjct: 90  WDIAIATMKVGE--VCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 137

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V   
Sbjct: 29  DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 88
Query: 105 LDNGIITMKKRE-CAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSW 153
            D  + TMK  E C +   T   E  +G  G    +PPN+ + FEVEL  +
Sbjct: 89  WDIAVATMKVGELCRI---TCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 136

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 176 DASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQ 235
           D SP   DE ++K     G GT   +TP  G   +   V Y   L DGT F+    D + 
Sbjct: 23  DISPKQ-DEGVLKVIKREGTGT---ETPMIGDRVF---VHYTGWLLDGTKFDSS-LDRKD 74
Query: 236 PLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEV 295
              F   + +VI   D   ATMK  E   +T   EY +G+  +      IP  A L +EV
Sbjct: 75  KFSFDLGKGEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSP---PKIPPNATLVFEV 131
Query: 296 EMMDF 300
           E+ +F
Sbjct: 132 ELFEF 136

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           G  V++HY G L DG KFDS++DR DP  F LG G V  G D G+  MK     V   T+
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 179
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           P +L +G  G    +PPN+ + FEVEL+
Sbjct: 180 PPQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           G  V++HY G L DG KFDS++DR DP  F LG G V  G D G+  MK     V   T+
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 179
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           P +L +G  G    +PPN+ + FEVEL+
Sbjct: 180 PPQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           G  V++HY G L DG KFDS++DR DP  F LG G V  G D G+  MK     V   T+
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 179
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           P +L +G  G    +PPN+ + FEVEL+
Sbjct: 180 PPQLGYGARGAAGVIPPNATLVFEVELL 207

>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/107 (42%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+K + L  G   +    G  V++HY G L DG KFDS++DR DP  F LG G V  G 
Sbjct: 28  SGLKYEDLTEGSGAEA-RAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGW 86
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
           D G+  MK     V   T+P +L +G  G    +PPN+ + FEVEL+
Sbjct: 87  DEGVQGMKVG--GVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 131

>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/107 (42%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+K + L  G   +    G  V++HY G L DG KFDS++DR DP  F LG G V  G 
Sbjct: 8   SGLKYEDLTEGSGAEA-RAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHVIKGW 66
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
           D G+  MK     V   T+P +L +G  G    +PPN+ + FEVEL+
Sbjct: 67  DEGVQGMKVG--GVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 111

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           G  V++HY G L DG KFDS++DR DP  F LG G V  G D G+  MK     V   T+
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 179
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           P +L +G  G    +PPN+ + FEVEL+
Sbjct: 180 PPQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/107 (42%), Positives = 60/107 (56%), Gaps = 4/107 (3%)
Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+K + L  G   +    G  V++HY G L DG KFDS++DR DP  F LG G V  G 
Sbjct: 12  SGLKYEDLTEGSGAEA-RAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGW 70
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
           D G+  MK     V   T+P +L +G  G    +PPN+ + FEVEL+
Sbjct: 71  DEGVQGMKVG--GVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELL 115

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDD-EQKLVKSLRVSCWLNSAACCLKL 380
           K  GN  FK+  +E A KKY K    V    +  +D +   ++ + +SC LN  AC LK+
Sbjct: 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 286
Query: 381 KDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
            D+QGA++ C + L+ D  N KALYRRAQ +  + +   A  D+KKA E  P+++
Sbjct: 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 8/114 (7%)
Query: 45  NSGIKKKLLKNGV--DWDTPEFGDEVTIHYVGTL-LDGTKFDSTRDRYDPLTFKLGTGQV 101
           + G+ K +L+ G   + + P+ G+EVT+HYVG L   G  FDS+R+R  P  F LG G+V
Sbjct: 14  DGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEV 73
Query: 102 ATGLDNGIITMKKRE-CAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVSW 153
             G D  + +M K E C+V    L S+  +G EG  +S+P NSV+ FE+EL+S+
Sbjct: 74  IKGWDICVASMTKNEKCSV---RLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 30/145 (20%)
Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
           V L++DGG+VK IL KGE                            P++G E     V Y
Sbjct: 9   VHLTEDGGVVKTILRKGEGGEE----------------------NAPKKGNEV---TVHY 43
Query: 217 IARLE-DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
           + +LE  G VF+    +   P +F   + +VI G D   A+M K E   V ++ +YG+G 
Sbjct: 44  VGKLESSGKVFDSS-RERNVPFKFHLGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGE 102
Query: 276 VEAKRDLATIPSCAKLYYEVEMMDF 300
                   +IP  + L +E+E++ F
Sbjct: 103 EGCGE---SIPGNSVLIFEIELISF 124

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV    D
Sbjct: 36  GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWD 95
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            G+ TMKK E  +       E  +G  G    +P N+ + FE+EL+ +
Sbjct: 96  IGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 183 DEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITD 242
           D  ++K    +G+G    +TP  G + Y   V Y  +L +G  F+   +D  +P  F   
Sbjct: 34  DRGVLKIVKRVGNG---EETPMIGDKVY---VHYKGKLSNGKKFDSS-HDRNEPFVFSLG 86
Query: 243 EEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
           + QVI   D   ATMKK E   +    EY +G+  +   L  IPS A L++E+E++DF
Sbjct: 87  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDF 141

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV   
Sbjct: 18  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 77
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            D G+ TMKK E  +       E  +G  G    +P N+ + FE+EL+ +
Sbjct: 78  WDIGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           G    + E+GE   S    D  ++K    +G+G    +TP  G + Y   V Y  +L +G
Sbjct: 1   GAPATVAEQGEDITS--KKDRGVLKIVKRVGNGE---ETPMIGDKVY---VHYKGKLSNG 52
Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
             F+   +D  +P  F   + QVI   D   ATMKK E   +    EY +G+  +   L 
Sbjct: 53  KKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LP 108
Query: 284 TIPSCAKLYYEVEMMDF 300
            IPS A L++E+E++DF
Sbjct: 109 KIPSNATLFFEIELLDF 125

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           G  V++HY G L DG KF S++DR DP  F LG G V  G D G+  MK     V   T+
Sbjct: 122 GQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 179
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           P +L +G  G    +PPN+ + FEVEL+
Sbjct: 180 PPQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV    D
Sbjct: 36  GVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWD 95
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            G+ TMKK E  +       E  +G  G    +P N+ + FE+EL+ +
Sbjct: 96  IGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Query: 183 DEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITD 242
           D  ++K    +G+G    +TP  G + Y   V Y  +L +G  F+   +D  +P  F   
Sbjct: 34  DRGVLKIVKRVGNG---EETPMIGDKVY---VHYKGKLSNGKKFDSS-HDRNEPFVFSLG 86
Query: 243 EEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
           + QVI   D   ATMKK E   +    EY +G+  +   L  IPS A L++E+E++DF
Sbjct: 87  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDF 141

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV   
Sbjct: 18  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 77
Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            D G+ TMKK E  +       E  +G  G    +P N+ + FE+EL+ +
Sbjct: 78  WDIGVATMKKGE--ICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           G    + E+GE   S    D  ++K    +G+G    +TP  G + Y   V Y  +L +G
Sbjct: 1   GAPATVTEQGEDITS--KKDRGVLKIVKRVGNG---EETPMIGDKVY---VHYKGKLSNG 52
Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
             F+   +D  +P  F   + QVI   D   ATMKK E   +    EY +G+  +   L 
Sbjct: 53  KKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LP 108
Query: 284 TIPSCAKLYYEVEMMDF 300
            IPS A L++E+E++DF
Sbjct: 109 KIPSNATLFFEIELLDF 125

>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/91 (46%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 62  PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFT 121
           P+ GD VTIHY GTL +G KFDS+ DR  P    +G GQV  G D GI  +   E A   
Sbjct: 22  PKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKA--R 79
Query: 122 FTLPSELRFGVEGRDSL-PPNSVVQFEVELV 151
            T+P    +G  G   L PPNS + F+VEL+
Sbjct: 80  LTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110

>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           G  V++HY G L DG KFDS++DR DP  F LG G V  G D G+  MK     V   T+
Sbjct: 26  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKV--GGVRRLTI 83
Query: 125 PSELRFGVEGRDS-LPPNSVVQFEVELV 151
           P +L +G  G    +PPN+ + FEVEL+
Sbjct: 84  PPQLGYGAGGAGGVIPPNATLVFEVELL 111

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 8/114 (7%)
Query: 45  NSGIKKKLLKNGVDW--DTPEFGDEVTIHYVGTLLD-GTKFDSTRDRYDPLTFKLGTGQV 101
           + G+ K +LK G +   + P+ G+EVT+HYVG L   G  FDS+ DR  P  F L  G+V
Sbjct: 15  DGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEV 74
Query: 102 ATGLDNGIITMKKRE-CAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVSW 153
             G D  + +M+K E C V    + S   +G EG  +S+P NSV+ FE+EL+S+
Sbjct: 75  IKGWDICVSSMRKNEKCLV---RIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 30/145 (20%)
Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
           V+L+ DGG++K IL+KG+                            P++G E     V Y
Sbjct: 10  VELTADGGVIKTILKKGDEGEE----------------------NIPKKGNEV---TVHY 44
Query: 217 IARLED-GTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
           + +LE  G VF+   +D   P +F  ++ +VI G D   ++M+K E  +V I   YG+G+
Sbjct: 45  VGKLESTGKVFDSS-FDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGD 103
Query: 276 VEAKRDLATIPSCAKLYYEVEMMDF 300
                   +IP  + L +E+E++ F
Sbjct: 104 EGCGE---SIPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 8/114 (7%)
Query: 45  NSGIKKKLLKNGVDW--DTPEFGDEVTIHYVGTLLD-GTKFDSTRDRYDPLTFKLGTGQV 101
           + G+ K +LK G +   + P+ G+EVT+HYVG L   G  FDS+ DR  P  F L  G+V
Sbjct: 15  DGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEV 74
Query: 102 ATGLDNGIITMKKRE-CAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVSW 153
             G D  + +M+K E C V    + S   +G EG  +S+P NSV+ FE+EL+S+
Sbjct: 75  IKGWDICVSSMRKNEKCLV---RIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 30/145 (20%)
Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
           V+L+ DGG++K IL+KG+                            P++G E     V Y
Sbjct: 10  VELTADGGVIKTILKKGDEGEE----------------------NIPKKGNEV---TVHY 44
Query: 217 IARLED-GTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
           + +LE  G VF+   +D   P +F  ++ +VI G D   ++M+K E  +V I   YG+G+
Sbjct: 45  VGKLESTGKVFDSS-FDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGD 103
Query: 276 VEAKRDLATIPSCAKLYYEVEMMDF 300
                   +IP  + L +E+E++ F
Sbjct: 104 EGCGE---SIPGNSVLLFEIELLSF 125

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 73/135 (54%), Gaps = 5/135 (3%)
Query: 303 EKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLV 362
           +K  ++  ++ K+++A   KEEGN  FK  +   A  KY +A D       +  D+Q L+
Sbjct: 23  KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW--DDQILL 80
Query: 363 ---KSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLIL 419
              K++ +SC LN A C  K KDY  AI+  SKVL  D +NVKALY+   A M    L  
Sbjct: 81  DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEE 140
Query: 420 AELDIKKAIEADPQN 434
           A+ ++ KA   +P N
Sbjct: 141 AKENLYKAASLNPNN 155

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 11/111 (9%)
Query: 50  KKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDST-------RDRYDPLTFKLGTGQVA 102
           K +LK G   + P+ GD V   Y GTL DGT FD+        +    PL+FK+G G+V 
Sbjct: 5   KSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVI 64
Query: 103 TGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELV 151
            G D  ++TM K E A     +  E  +G +G+    +PPN+ + FEVELV
Sbjct: 65  RGWDEALLTMSKGEKA--RLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELV 113

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 216 YIARLEDGTVFEK------KGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINH 269
           Y   L+DGTVF+       K     +PL F     +VI G D    TM K E A + I  
Sbjct: 27  YTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEP 86
Query: 270 EYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
           E+ +G  + + D A IP  AKL +EVE++D 
Sbjct: 87  EWAYGK-KGQPD-AKIPPNAKLTFEVELVDI 115

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDST-------RDRYDPLTFKL 96
           G     K +LK G   + P+ GD V   Y GTL DGT FD+        +    PL+FK+
Sbjct: 2   GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKV 61
Query: 97  GTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELV 151
           G G+V  G D  ++TM K E A     +  E  +G +G+    +PPN+ + FEVELV
Sbjct: 62  GVGKVIRGWDEALLTMSKGEKA--RLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELV 116

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  GL+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 9/91 (9%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITM---KKRECAVFT 121
           GD + +HY G L DGT+FDS+  +  P  F LGTGQV  G D G++ M   +KR+     
Sbjct: 9   GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRK----- 63
Query: 122 FTLPSELRFGVEGR-DSLPPNSVVQFEVELV 151
             +PSEL +G  G    +P  + + FEVEL+
Sbjct: 64  LVIPSELGYGERGAPPKIPGGATLVFEVELL 94

>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++   L  G +   P+ G    +HY GTL DG  FDS+R R  P  F +G G+V  G D
Sbjct: 2   GVQVVTLAAGDEATYPKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWD 61
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A        +  +G  G    +PPN+ + F+VEL+
Sbjct: 62  EGVAQMSVGQRA--KLVCSPDYAYGSRGHPGVIPPNATLTFDVELL 105

>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator (Tcmip) Length = 167

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+  + +  G     P   D+  +HY G L DGT FDS+R+R  P TF+    +V  G 
Sbjct: 37  SGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFR--PNEVIKGW 94
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDSL-PPNSVVQFEVELVSWITVVDLSKDGG 164
              +  M  RE   +   +P +L +GV G   + PP S ++F+VEL+S        KDGG
Sbjct: 95  TEALQLM--REGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELIS-------IKDGG 145
Query: 165 I------VKKILEKGERD 176
                  V +IL K E D
Sbjct: 146 KGRTAEEVDEILRKAEED 163

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PPN+ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPNATLIFDVELL 104

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L +G KFDS+RDR  P  F++G  +V  G +
Sbjct: 1   GVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVSW 153
            G   M   + A  T T   ++ +G  G    +PPN+ + F+VEL++ 
Sbjct: 61  EGAAQMSLGQRAKLTCT--PDVAYGATGHPGVIPPNATLIFDVELLNL 106

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G  
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQ 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 3   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 62
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 63  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 106

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 62  PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFT 121
           P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G + G+  M   + A   
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRA--K 73
Query: 122 FTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 74  LTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G  
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWA 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 16/116 (13%)
Query: 322 KEEGNLLFKNGKYERAGKKYNKAA--DCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK 379
           ++EGN LFK G Y  A   Y +A   D   +D + +                N AAC LK
Sbjct: 32  RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVL--------------HRNRAACHLK 77
Query: 380 LKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
           L+DY  A    SK ++ D  +VKALYRR+QA  ++  L  A LD+++ +  +P+N+
Sbjct: 78  LEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG K DS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A  T +   +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRAKLTIS--PDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli Length = 245

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 36  KVGEERGLGNS--GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLT 93
           K  +E+G+  S  G+  ++++ G   + P+  D V ++Y GTL+DG +FD++  R +PL+
Sbjct: 109 KFAKEKGVKTSSTGLVYQVVEAG-KGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLS 167
Query: 94  FKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELV 151
           F+L    V  G   G+  +KK         +P EL +G  G   +PPNS + F+VEL+
Sbjct: 168 FRLDG--VIPGWTEGLKNIKKGGKI--KLVIPPELAYGKAGVPGIPPNSTLVFDVELL 221

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RD+  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGVPGIIPPHATLVFDVELL 104

>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13 Length = 129

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 20/102 (19%)
Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGI---------ITMKKR 115
           G  +  HYVG L +G  FDS+ +R  PLTF++G G+V  G D GI         +T  KR
Sbjct: 30  GQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKR 89
Query: 116 ECAVFTFTLPSELRFGVEGRDS------LPPNSVVQFEVELV 151
                T  +P EL +G  G         +PP SV+ F++E +
Sbjct: 90  -----TLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 126

>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From Escherichia Coli Length = 224

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 36  KVGEERGLGNS--GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLT 93
           K  +E+G+  S  G+  ++++ G   + P+  D V ++Y GTL+DG +FD++  R +PL+
Sbjct: 109 KFAKEKGVKTSSTGLVYQVVEAG-KGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLS 167
Query: 94  FKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELV 151
           F+L    V  G   G+  +KK         +P EL +G  G   +PPNS + F+VEL+
Sbjct: 168 FRLDG--VIPGWTEGLKNIKKGGKI--KLVIPPELAYGKAGVPGIPPNSTLVFDVELL 221

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG K DS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELV 151
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/113 (35%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK 381
           K  GN  +K G Y++A + Y KA +    + S                W N      K  
Sbjct: 13  KNLGNAYYKQGDYQKAIEYYQKALELDPNNAS---------------AWYNLGNAYYKQG 57
Query: 382 DYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
           DYQ AIE   K L+ D +N KA YRR  AY +  D   A  D +KA+E DP N
Sbjct: 58  DYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 13/135 (9%)
Query: 306 PWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS------EDGS--FVDD 357
           PW M  + K +A     +EGN L++ G  + A  KY  A  C+       + GS  ++  
Sbjct: 2   PWAMTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQL 61
Query: 358 EQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADL 417
           +Q++   L     LN   C L +++Y   ++ CS +L+    NVKA ++R +A+  + + 
Sbjct: 62  DQQITPLL-----LNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNA 116
Query: 418 ILAELDIKKAIEADP 432
             A+ D  K +E DP
Sbjct: 117 QEAQADFAKVLELDP 131

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV------SEDGS--FVDDEQKLVKSL 365
           K +A     +EGN L++ G  + A  KY  A  C+       + GS  ++  +Q++   L
Sbjct: 4   KAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLL 63
Query: 366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIK 425
                LN   C L +++Y   ++ CS +L+    NVKA ++R +A+  + +   A+ D  
Sbjct: 64  -----LNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFA 118
Query: 426 KAIEADP 432
           K +E DP
Sbjct: 119 KVLELDP 125

>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity Potentiator Protein (Mip) A Major Virulence Factor From Legionella Pneumophila Length = 213

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG++ K++ +G +   P   D VT+ Y G L+DGT FDST     P TF++   QV  G 
Sbjct: 106 SGLQYKVINSG-NGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGW 162
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVS 152
              +  M     + +   +PS L +G       + PN  + F++ L+S
Sbjct: 163 TEALQLMP--AGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 15/110 (13%)
Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           GN  +K G Y+ A + Y KA +               +       W N      K  DY 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALE---------------LDPNNAEAWYNLGNAYYKQGDYD 60
Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            AIE   K L+ D +N +A Y    AY +  D   A    +KA+E DP N
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110

>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans Isomerase Fkbp14 Length = 125

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 65  GDEVTIHYVGTL-LDGTKFDSTRDRYD--PLTFKLGTGQVATGLDNGIITM---KKRECA 118
           GD + +HY G L  DG+ F ST    +  P+ F LG  +   G D G+  M   +KR+  
Sbjct: 32  GDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRK-- 89
Query: 119 VFTFTLPSELRFGVEGRDSLPPNSVVQFEVELV 151
                +P  L +G EG+  +PP S + F ++L+
Sbjct: 90  ---LIIPPALGYGKEGKGKIPPESTLIFNIDLL 119

>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella Pneumophila Mip Length = 137

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG++ K++ +G +   P   D VT+ Y G L+DGT FDST     P TF++   QV  G 
Sbjct: 30  SGLQYKVINSG-NGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGW 86
Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDS-LPPNSVVQFEVELVS 152
              +  M     + +   +PS L +G       + PN  + F++ L+S
Sbjct: 87  TEALQLMPAG--STWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 132

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 44  GNSGIKKKLLKNGV-DWDTPEFGDEVTIHYVGTLLDGTK-FDSTRDRYDPLTFKLGTGQV 101
           G+ G+ K +++ G  D   P+    V + Y G L    + FDS   R  P   KLG    
Sbjct: 24  GDRGVLKDVIREGAGDLVAPD--ASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDIT 81
Query: 102 ATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSL-PPNSVVQFEVELVSWI 154
             G++ G+++M++ E A F F       +G  G   L PPN+ V FE+EL+ ++
Sbjct: 82  LWGMELGLLSMRRGELARFLFK--PNYAYGTLGCPPLIPPNTTVLFEIELLDFL 133

>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The Chaperone Binding Site Occupied By The Linker Of The Purification Tag Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 68  VTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSE 127
           V +H+   L DGT  +STR+   P  F+LG   ++ GL+  ++ +K  +    TF+L  +
Sbjct: 31  VLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKT--TFSLEPD 88
Query: 128 LRFGVEGRDSLPPNSVVQF------EVELVSWITVVDLSKDGGIVKKI 169
             FGV   D +   S  +F      E+  +   T +D S+  G++++I
Sbjct: 89  AAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREI 136

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 15/119 (12%)
Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
           E A  +K +GN  FK G Y  A + YN+A           D E  ++ S       N AA
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--------RDPENAILYS-------NRAA 55
Query: 376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
           C  KL ++Q A++ C   +  D   +K   R+A   + + +   A+   + A++ DP N
Sbjct: 56  CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 30/68 (44%)
Query: 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKK 426
              W N      K  DY  AIE   K L+ D +N +A Y    AY +  D   A    +K
Sbjct: 9   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 427 AIEADPQN 434
           A+E DP N
Sbjct: 69  ALELDPNN 76

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 15/110 (13%)
Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           GN  +K G Y+ A + Y KA +               +       W N      K  DY 
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALE---------------LDPRSAEAWYNLGNAYYKQGDYD 52
Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            AIE   K L+ D  + +A Y    AY +  D   A    +KA+E DP++
Sbjct: 53  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	437
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-101
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	7e-70
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	7e-18
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	4e-65
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	1e-58
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	6e-63
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	8e-22
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	1e-57
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	9e-16
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-46
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	7e-45
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	2e-38
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	3e-13
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	1e-35
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	4e-13
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	6e-35
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	9e-11
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	6e-35
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	6e-20
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-34
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	3e-34
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	1e-12
2ppn_A	107	FK506-binding protein 1A; high resolution protein	3e-34
2ppn_A	107	FK506-binding protein 1A; high resolution protein	2e-11
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	1e-33
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	1e-12
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	4e-33
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	2e-10
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	4e-33
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	2e-18
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	5e-33
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	7e-18
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	1e-32
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	6e-18
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	2e-32
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	2e-11
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	3e-32
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	1e-12
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	6e-31
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	9e-31
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	2e-10
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	4e-30
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	1e-08
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	3e-29
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	3e-08
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	1e-28
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	8e-09
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	1e-28
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	1e-08
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	3e-27
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	4e-08
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-23
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-23
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-23
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-23
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	6e-23
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	4e-04
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	9e-23
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-22
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-22
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	1e-22
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	3e-05
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-22
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-21
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	2e-20
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	1e-04
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-19
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-18
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	5e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-17
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	7e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-16
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	6e-14
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	1e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-11
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	9e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	9e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-05
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	1e-10
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	5e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-10
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-04
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	2e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-04
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	5e-10
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	3e-04
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	8e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-06
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	7e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	8e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-05
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	2e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-04
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	3e-07
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	4e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	8e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	1e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	9e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-05
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	4e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	9e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	6e-04

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  307 bits (788), Expect = e-101
 Identities = 132/433 (30%), Positives = 206/433 (47%), Gaps = 52/433 (12%)

Query: 7   MTLEKGANLSDIDGEEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGD 66
           MT ++GA     + EE     V E    +         + G+ K + + G   +TP  GD
Sbjct: 1   MTTDEGAK----NNEESPTATVAEQGEDITS-----KKDRGVLKIVKRVGNGEETPMIGD 51

Query: 67  EVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPS 126
           +V +HY G L +G KFDS+ DR +P  F LG GQV    D G+ TMK+ E          
Sbjct: 52  KVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEIC--HLLCKP 109

Query: 127 ELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEV 185
           E  +G  G    +P N+ + FE+EL+ +    DL +DGGI+++   KGE  ++P +   V
Sbjct: 110 EYAYGSAGSLPKIPSNATLFFEIELLDFKGE-DLFEDGGIIRRTKRKGEGYSNPNEGATV 168

Query: 186 LVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFIT---D 242
            +  +                                G +F+       + + F     +
Sbjct: 169 EIHLEGRC----------------------------GGRMFD------CRDVAFTVGEGE 194

Query: 243 EEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK 302
           +  +  G+D+    M++EE  I+ +   YGFG  EA +    I   A+L YEV +  F K
Sbjct: 195 DHDIPIGIDKALEKMQREEQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEK 252

Query: 303 EKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLV 362
            K  WEM+ + K+E A   KE+G + FK GKY +A  +Y K    +  +    + E K  
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKAS 312

Query: 363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAEL 422
           +S  ++ +LN A C LKL++Y  A+E C K L  D  N K LYRR +A + + +   A+ 
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372

Query: 423 DIKKAIEADPQNR 435
           D +K +E +PQN+
Sbjct: 373 DFEKVLEVNPQNK 385

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  223 bits (570), Expect = 7e-70
 Identities = 85/282 (30%), Positives = 137/282 (48%), Gaps = 39/282 (13%)

Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
             + +DGGI+++I  +GE  A P +   V V  +    D                     
Sbjct: 19  SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFD----------------- 61

Query: 217 IARLEDGTVFEKKGYDGEQPLEFITDEEQ---VIAGLDRVAATMKKEEWAIVTINHEYGF 273
                            ++ L F   E +   +  GL+R    M+K E +IV +   Y F
Sbjct: 62  -----------------QRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAF 104

Query: 274 GNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGK 333
           G+V   ++   IP  A+L YE+ +  F K K  WEMN++ K+E +   KE G + FK GK
Sbjct: 105 GSVG--KEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK 162

Query: 334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393
           Y++A  +Y K    +  + SF ++E +  ++LR++  LN A C LKL+ +  AIE C+K 
Sbjct: 163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222

Query: 394 LDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
           L+ D +N K L RR +A++ + D  LA  D +K ++  P N+
Sbjct: 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 83.4 bits (206), Expect = 7e-18
 Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 18/158 (11%)

Query: 43  LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQ-- 100
             + GI +++   G  +  P  G  V +   G   D   FD        L F++G G+  
Sbjct: 22  EEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQ-----RELRFEIGEGENL 75

Query: 101 -VATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSL--PPNSVVQFEVELVSWITVV 157
            +  GL+  I  M+K E ++    L     FG  G++    PPN+ +++E+ L S+    
Sbjct: 76  DLPYGLERAIQRMEKGEHSI--VYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAK 133

Query: 158 DLSK-----DGGIVKKILEKGERDASPGDLDEVLVKYQ 190
           +  +            + E+G      G   + L++Y+
Sbjct: 134 ESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYK 171

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  211 bits (540), Expect = 4e-65
 Identities = 118/292 (40%), Positives = 157/292 (53%), Gaps = 37/292 (12%)

Query: 36  KVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFK 95
           KVGEE  +G  G+KKKLLK G  WDTPE GDEV +HY GTLLDG KFDS+RDR D   FK
Sbjct: 1   KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 60

Query: 96  LGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVSWI 154
           LG GQV  G D GI TMKK E     FT+P EL +G  G   ++P N+ +QF+VEL+SW 
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGE--NALFTIPPELAYGESGSPPTIPANATLQFDVELLSWT 118

Query: 155 TVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
           +V D++KDGGI KKIL++G++  +P D DEV VKY+                        
Sbjct: 119 SVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYE------------------------ 154

Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
              ARLEDGTV         + +EF   +  +   L +   TMKK E  ++ +  +YGFG
Sbjct: 155 ---ARLEDGTVV-----SKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFG 206

Query: 275 N--VEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEE 324
                A  +   +P  A L  ++E++ +       +     K      +  E
Sbjct: 207 EMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYE 258

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  195 bits (496), Expect = 1e-58
 Identities = 93/265 (35%), Positives = 135/265 (50%), Gaps = 40/265 (15%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI KK+LK G  W+ P+  DEV + Y   L DGT    +      + F +  G +   
Sbjct: 126 DGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSE----GVEFTVKDGHLCPA 181

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR------DSLPPNSVVQFEVELVSWITVVD 158
           L   + TMKK E       +  +  FG  GR       ++PPN+ +  ++ELVSW TV +
Sbjct: 182 LAKAVKTMKKGEKV--LLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTE 239

Query: 159 LSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIA 218
           +  D  I+KK+L++ E    P +   V                            V    
Sbjct: 240 IGDDKKILKKVLKEXEGYERPNEGAVV---------------------------TVKITG 272

Query: 219 RLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278
           +L+DGTVF KKG+D ++P EF TDEE VI GLDR    MKK E A+VTI  EY +G+ E+
Sbjct: 273 KLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTES 332

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKE 303
           K+D A +P  + + YEVE++ F+K+
Sbjct: 333 KQD-AIVPPNSTVIYEVELVSFVKD 356

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  206 bits (524), Expect = 6e-63
 Identities = 80/295 (27%), Positives = 132/295 (44%), Gaps = 35/295 (11%)

Query: 147 EVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEG 206
           E  +   +       D  + K+I+++G   + P       + Y+                
Sbjct: 33  EGNVPPKVDSEAEVLDEKVSKQIIKEGH-GSKPSKYSTCFLHYR---------------- 75

Query: 207 VEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFIT-DEEQVIAGLDRVAATMKKEEWAIV 265
                      A  ++     +  +  +QP+E +   E++ +AGL    A+MK  E A+V
Sbjct: 76  -----------AWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALV 124

Query: 266 TINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVP---WEMNNQGKIEAAGRKK 322
            +  E  +G  E       +P  A L YEVE++ F + K      +M  + +I AA R+K
Sbjct: 125 HVGWELAYGK-EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRK 183

Query: 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSF--VDDEQKLVKSLRVSCWLNSAACCLKL 380
            +GN LFK  K E A ++Y  A   + +D  F      Q +  +++  C LN AAC +KL
Sbjct: 184 MDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL 243

Query: 381 KDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
           K Y  AI  C+ VL  +  N KAL+RR +A  E+  +  A  D +KA +  P ++
Sbjct: 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 95.1 bits (236), Expect = 8e-22
 Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 8/155 (5%)

Query: 4   ESVMTLEKGANLSDIDGEEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPE 63
               T ++ + +              E   P KV  E  + +  + K+++K G     P 
Sbjct: 7   HQTQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEG-HGSKPS 65

Query: 64  FGDEVTIHYVGTLLDGT-KFDSTRDRYDPLTFKLG-TGQVATGLDNGIITMKKRECAVFT 121
                 +HY     +   KF+ T     P+   LG   +   GL  G+ +MK  E A   
Sbjct: 66  KYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERA--L 123

Query: 122 FTLPSELRFGVEGRDS---LPPNSVVQFEVELVSW 153
             +  EL +G EG  S   +PP + + +EVE++ +
Sbjct: 124 VHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGF 158

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  190 bits (483), Expect = 1e-57
 Identities = 85/306 (27%), Positives = 128/306 (41%), Gaps = 43/306 (14%)

Query: 8   TLEKGANLSDIDGEEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDE 67
            L    +    +  +        +  P++  +     + G+ K + + G   + P  GD 
Sbjct: 13  GLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDR 72

Query: 68  VTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSE 127
           V +HY G LLDGTKFDS+ DR D  +F LG G+V    D  I TMK  E      T   E
Sbjct: 73  VFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVC--HITCKPE 130

Query: 128 LRFGVEGR-DSLPPNSVVQFEVELVS-WITVVDLSKDGGIVKKILEKGERDASPGDLDEV 185
             +G  G    +PPN+ + FEVEL       +   +DGGI+++I  +GE  A P +   V
Sbjct: 131 YAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIV 190

Query: 186 LVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQ 245
            V  +    D                             +F+++       L F   E +
Sbjct: 191 EVALEGYYKDK----------------------------LFDQR------ELRFEIGEGE 216

Query: 246 VI---AGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK 302
            +    GL+R    M+K E +IV +   Y FG     ++   IP  A+L YE+ +  F K
Sbjct: 217 NLDLPYGLERAIQRMEKGEHSIVYLKPSYAFG--SVGKEKFQIPPNAELKYELHLKSFEK 274

Query: 303 EKVPWE 308
            K  WE
Sbjct: 275 AKESWE 280

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 76.4 bits (188), Expect = 9e-16
 Identities = 42/196 (21%), Positives = 62/196 (31%), Gaps = 43/196 (21%)

Query: 133 EGRDSLPPNSVVQFEVELVSWITV------------VDLSKDGGIVKKILEKGERDASPG 180
                L P        E+ +  +             +   +D G++K I  +G     P 
Sbjct: 9   HHSSGLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPM 68

Query: 181 DLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI 240
             D V V Y                              L DGT F+    D +    F 
Sbjct: 69  IGDRVFVHY---------------------------TGWLLDGTKFDSS-LDRKDKFSFD 100

Query: 241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
             + +VI   D   ATMK  E   +T   EY +G   +      IP  A L +EVE+ +F
Sbjct: 101 LGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYG---SAGSPPKIPPNATLVFEVELFEF 157

Query: 301 IKEKVPWEMNNQGKIE 316
             E +  E +      
Sbjct: 158 KGEDLTEEEDGGIIRR 173

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  158 bits (402), Expect = 1e-46
 Identities = 50/146 (34%), Positives = 73/146 (50%), Gaps = 2/146 (1%)

Query: 293 YEVEMMDF-IKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED 351
              E + F   +K  ++  ++ K+++A   KEEGN  FK  +   A  KY +A D     
Sbjct: 12  SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT 71

Query: 352 GSFVDDEQ-KLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQA 410
             + D       K++ +SC LN A C  K KDY  AI+  SKVL  D +NVKALY+   A
Sbjct: 72  EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVA 131

Query: 411 YMEIADLILAELDIKKAIEADPQNRN 436
            M    L  A+ ++ KA   +P N +
Sbjct: 132 NMYFGFLEEAKENLYKAASLNPNNLD 157

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  152 bits (386), Expect = 7e-45
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 3/130 (2%)

Query: 309 MNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV---SEDGSFVDDEQKLVKSL 365
                K+++    +++GN LF    Y+ A   Y  A   +          + E   +   
Sbjct: 2   NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61

Query: 366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIK 425
            +  + N + C L + D   A E  S+VL  +  N KAL+RRA+A +    L  AE D+K
Sbjct: 62  NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121

Query: 426 KAIEADPQNR 435
             +   P   
Sbjct: 122 LLLRNHPAAA 131

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score =  134 bits (339), Expect = 2e-38
 Identities = 51/126 (40%), Positives = 69/126 (54%), Gaps = 4/126 (3%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVAT 103
            + G+ K + K G     P  G  V +HYVGTL +GTKFDS+RDR D  +F LG G V  
Sbjct: 12  KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 71

Query: 104 GLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITV-VDLSK 161
           G D G+ TM K E A   FT+ S+  +G  G    +P  + + FEVEL  W    +   +
Sbjct: 72  GWDLGVATMTKGEVA--EFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWSAEDISPDR 129

Query: 162 DGGIVK 167
           DG I++
Sbjct: 130 DGTILR 135

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 65.4 bits (160), Expect = 3e-13
 Identities = 43/152 (28%), Positives = 59/152 (38%), Gaps = 31/152 (20%)

Query: 160 SKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIAR 219
            KDGG++K I ++G+    P     V V Y      GT                      
Sbjct: 11  KKDGGVLKLIKKEGQGVVKPTTGTTVKVHYV-----GT---------------------- 43

Query: 220 LEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAK 279
           LE+GT F+    D      F      VI G D   ATM K E A  TI  +YG+G     
Sbjct: 44  LENGTKFDSS-RDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYG---DA 99

Query: 280 RDLATIPSCAKLYYEVEMMDFIKEKVPWEMNN 311
                IP  A L +EVE+ ++  E +  + + 
Sbjct: 100 GSPPKIPGGATLIFEVELFEWSAEDISPDRDG 131

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score =  126 bits (320), Expect = 1e-35
 Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVAT 103
            + G+ K + + G   +TP  GD+V +HY G L +G KFDS+ DR +P  F LG GQV  
Sbjct: 17  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIK 76

Query: 104 GLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
             D G+ TMKK E          E  +G  G    +P N+ + FE+EL+ +
Sbjct: 77  AWDIGVATMKKGEIC--HLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 65.0 bits (159), Expect = 4e-13
 Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 31/147 (21%)

Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
           +   KD G++K +   G  + +P   D+V                            V Y
Sbjct: 13  ITSKKDRGVLKIVKRVGNGEETPMIGDKV---------------------------YVHY 45

Query: 217 IARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNV 276
             +L +G  F+   +D  +P  F   + QVI   D   ATMKK E   +    EY +G  
Sbjct: 46  KGKLSNGKKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYG-- 102

Query: 277 EAKRDLATIPSCAKLYYEVEMMDFIKE 303
            +   L  IPS A L++E+E++DF  E
Sbjct: 103 -SAGSLPKIPSNATLFFEIELLDFKGE 128

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score =  124 bits (314), Expect = 6e-35
 Identities = 43/110 (39%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
              +K   +  G     P+ GD VTIHY GTL +G KFDS+ DR  P    +G GQV  G
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            D GI  +   E A    T+P    +G  G    +PPNS + F+VEL+  
Sbjct: 65  WDVGIPKLSVGEKA--RLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV 112

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 58.0 bits (141), Expect = 9e-11
 Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 11/114 (9%)

Query: 187 VKYQVM-LGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQ 245
           VK   +  GDG    K   + V      + Y   LE+G  F+    D   P +      Q
Sbjct: 8   VKIDRISPGDGATFPK-TGDLVT-----IHYTGTLENGQKFDSS-VDRGSPFQCNIGVGQ 60

Query: 246 VIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMD 299
           VI G D     +   E A +TI   Y +G    +     IP  + L ++VE++ 
Sbjct: 61  VIKGWDVGIPKLSVGEKARLTIPGPYAYG---PRGFPGLIPPNSTLVFDVELLK 111

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  125 bits (316), Expect = 6e-35
 Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 11/137 (8%)

Query: 32  AAPLKVGEERG--LGNSGIKKKLLKNGVD-WDTPEFGDEVTIHYVGTLLDGTKFDSTRDR 88
            +    GEE    LGN  ++KK L  G      P  G  VT+H   +L +GT+       
Sbjct: 1   GSSGSSGEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP-- 58

Query: 89  YDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDS--LPPNSVVQF 146
              L F LG   V   LD  +  M   E      T  S+  +G +G  S  +PP++ +  
Sbjct: 59  --ELVFTLGDCDVIQALDLSVPLMDVGE--TAMVTADSKYCYGPQGSRSPYIPPHAALCL 114

Query: 147 EVELVSWITVVDLSKDG 163
           EV L + +   DL   G
Sbjct: 115 EVTLKTAVDRPDLEMSG 131

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 84.7 bits (210), Expect = 6e-20
 Identities = 33/149 (22%), Positives = 48/149 (32%), Gaps = 35/149 (23%)

Query: 157 VDLSKDGGIVKKILEKG-ERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVS 215
           +D+  +G + KK L  G    + P     V V                            
Sbjct: 11  LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHL-------------------------- 44

Query: 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
               LE+GT         E  L F   +  VI  LD     M   E A+VT + +Y +G 
Sbjct: 45  -QTSLENGTRV-----QEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGP 98

Query: 276 VEAKRDLATIPSCAKLYYEVEMMDFIKEK 304
             ++     IP  A L  EV +   +   
Sbjct: 99  QGSR--SPYIPPHAALCLEVTLKTAVDRP 125

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  131 bits (331), Expect = 1e-34
 Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 1/139 (0%)

Query: 298 MDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDD 357
            DF ++      +    +  +   K  GN  FK+  +E A KKY K    V    +  +D
Sbjct: 203 PDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAED 262

Query: 358 EQKL-VKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIAD 416
                ++ + +SC LN  AC LK+ D+QGA++ C + L+ D  N KALYRRAQ +  + +
Sbjct: 263 ADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE 322

Query: 417 LILAELDIKKAIEADPQNR 435
              A  D+KKA E  P+++
Sbjct: 323 YDQALADLKKAQEIAPEDK 341

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score =  123 bits (312), Expect = 3e-34
 Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 21  EEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGT 80
           +  E       A   +    +   + G+ K + + G   +TP  GD+V +HY G L +G 
Sbjct: 12  KNNEESPTATVAEQGEDITSKK--DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGK 69

Query: 81  KFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLP 139
           KFDS+ DR +P  F LG GQV    D G+ TMKK E          E  +G  G    +P
Sbjct: 70  KFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEIC--HLLCKPEYAYGSAGSLPKIP 127

Query: 140 PNSVVQFEVELVSW 153
            N+ + FE+EL+ +
Sbjct: 128 SNATLFFEIELLDF 141

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 31/147 (21%)

Query: 157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSY 216
           +   KD G++K +   G  + +P   D+V V                            Y
Sbjct: 29  ITSKKDRGVLKIVKRVGNGEETPMIGDKVYVH---------------------------Y 61

Query: 217 IARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNV 276
             +L +G  F+   +D  +P  F   + QVI   D   ATMKK E   +    EY +G  
Sbjct: 62  KGKLSNGKKFDSS-HDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYG-- 118

Query: 277 EAKRDLATIPSCAKLYYEVEMMDFIKE 303
            +   L  IPS A L++E+E++DF  E
Sbjct: 119 -SAGSLPKIPSNATLFFEIELLDFKGE 144

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score =  122 bits (309), Expect = 3e-34
 Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            G+  M   + A    T+  +  +G  G    +PP++ + F+VEL+  
Sbjct: 61  EGVAQMSVGQRA--KLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 59.5 bits (145), Expect = 2e-11
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 11/115 (9%)

Query: 187 VKYQVM-LGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQ 245
           V+ + +  GDG    K   +        V Y   LEDG  F+    D  +P +F+  +++
Sbjct: 2   VQVETISPGDGRTFPK-RGQTCV-----VHYTGMLEDGKKFDSS-RDRNKPFKFMLGKQE 54

Query: 246 VIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
           VI G +   A M   + A +TI+ +Y +G   A      IP  A L ++VE++  
Sbjct: 55  VIRGWEEGVAQMSVGQRAKLTISPDYAYG---ATGHPGIIPPHATLVFDVELLKL 106

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score =  121 bits (306), Expect = 1e-33
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLD-GTKFDSTRDRYDPLTFKLGTGQVA 102
           G+ G+ K +++ G   D       V + Y G L      FDS   R  P   KLG     
Sbjct: 24  GDRGVLKDVIREG-AGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITL 82

Query: 103 TGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWI 154
            G++ G+++M++ E A   F       +G  G    +PPN+ V FE+EL+ ++
Sbjct: 83  WGMELGLLSMRRGELA--RFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL 133

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 31/147 (21%)

Query: 155 TVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
            ++D+S D G++K ++ +G           VLVKY   L                     
Sbjct: 18  RMLDISGDRGVLKDVIREGA-GDLVAPDASVLVKYSGYLEHM------------------ 58

Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
                      F+   Y  + P      E+  + G++    +M++ E A       Y +G
Sbjct: 59  --------DRPFDSN-YFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYG 109

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDFI 301
            +        IP    + +E+E++DF+
Sbjct: 110 TLGCP---PLIPPNTTVLFEIELLDFL 133

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score =  120 bits (303), Expect = 4e-33
 Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 3/108 (2%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           + ++KK+L  G     P+ G +VT+HY G   DG +FDS+R R  P  F LG G+V  G 
Sbjct: 24  AQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGW 83

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVS 152
           D G+ TM   E A   FT+P +L +G  G    +PP + + FEVEL++
Sbjct: 84  DQGVATMTLGEKA--LFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 33/138 (23%), Positives = 49/138 (35%), Gaps = 31/138 (22%)

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
              + KK+L  G+    P    +V V Y      G                         
Sbjct: 23  SAQLEKKVLTPGDGVTKPQAGKKVTVHYD-----GR----------------------FP 55

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
           DG  F+       +P +F     +VI G D+  ATM   E A+ TI ++  +G       
Sbjct: 56  DGKQFDSS-RSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYP-- 112

Query: 282 LATIPSCAKLYYEVEMMD 299
              IP  A L +EVE++ 
Sbjct: 113 -PVIPPKATLVFEVELLA 129

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score =  120 bits (302), Expect = 4e-33
 Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 8/114 (7%)

Query: 43  LGNSGIKKKLLKNG-VDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQV 101
           LGN  ++KK L  G      P  G  VT+H   +L +GT+          L F LG   V
Sbjct: 10  LGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP----ELVFTLGDCDV 65

Query: 102 ATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWI 154
              LD  +  M   E A    T  S+  +G +GR   +PP++ +  EV L + +
Sbjct: 66  IQALDLSVPLMDVGETA--MVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 79.6 bits (197), Expect = 2e-18
 Identities = 33/146 (22%), Positives = 46/146 (31%), Gaps = 36/146 (24%)

Query: 157 VDLSKDGGIVKKILEKGE-RDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVS 215
           +D+  +G + KK L  G    + P     V V                            
Sbjct: 7   LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHL-------------------------- 40

Query: 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
               LE+GT         E  L F   +  VI  LD     M   E A+VT + +Y +G 
Sbjct: 41  -QTSLENGTRV-----QEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGP 94

Query: 276 VEAKRDLATIPSCAKLYYEVEMMDFI 301
                    IP  A L  EV +   +
Sbjct: 95  QGRS---PYIPPHAALCLEVTLKTAV 117

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score =  121 bits (306), Expect = 5e-33
 Identities = 37/148 (25%), Positives = 60/148 (40%), Gaps = 10/148 (6%)

Query: 21  EEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGT 80
              EP +  E   P KV  E  + +  + K+++K G     P       +HY     +  
Sbjct: 26  VHSEPSQ--EGNVPPKVDSEAEVLDEKVSKQIIKEG-HGSKPSKYSTCFLHYRAWTKNSQ 82

Query: 81  -KFDSTRDRYDPLTFKLGT-GQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSL 138
            KF+ T     P+   LG   +   GL  G+ +MK  E A     +  EL +G EG  S 
Sbjct: 83  HKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERA--LVHVGWELAYGKEGNFSF 140

Query: 139 ---PPNSVVQFEVELVSWITVVDLSKDG 163
              PP + + +EVE++ +    +     
Sbjct: 141 PNVPPMADLLYEVEVIGFDETKEGKARS 168

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 80.3 bits (198), Expect = 7e-18
 Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 33/161 (20%)

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
           D  + K+I+++G   + P       + Y+    +             F   + +      
Sbjct: 48  DEKVSKQIIKEGH-GSKPSKYSTCFLHYRAWTKNSQHK---------F---EDT------ 88

Query: 222 DGTVFEKKGYDGEQPLEF-ITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKR 280
                    +  +QP+E  +  E++ +AGL    A+MK  E A+V +  E  +G  E   
Sbjct: 89  ---------WHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK-EGNF 138

Query: 281 DLATIPSCAKLYYEVEMMDFIKE---KVPWEMNNQGKIEAA 318
               +P  A L YEVE++ F +    K   +M  + +I AA
Sbjct: 139 SFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAA 179

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score =  119 bits (301), Expect = 1e-32
 Identities = 39/152 (25%), Positives = 59/152 (38%), Gaps = 9/152 (5%)

Query: 8   TLEKGANLSDIDGEEEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVD-WDTPEFGD 66
             E+      +  E     E   + AP        LGN  ++KK L  G      P  G 
Sbjct: 5   PAEEAEQPGALAREFLAAMEPEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQ 64

Query: 67  EVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPS 126
            VT+H   +L +GT+          L F LG   V   LD  +  M   E      T  S
Sbjct: 65  VVTVHLQTSLENGTRVQEEP----ELVFTLGDCDVIQALDLSVPLMDVGE--TAMVTADS 118

Query: 127 ELRFGVEGRDS--LPPNSVVQFEVELVSWITV 156
           +  +G +G  S  +PP++ +  EV L + + +
Sbjct: 119 KYCYGPQGSRSPYIPPHAALCLEVTLKTAVDL 150

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 79.4 bits (196), Expect = 6e-18
 Identities = 33/155 (21%), Positives = 48/155 (30%), Gaps = 35/155 (22%)

Query: 157 VDLSKDGGIVKKILEKG-ERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVS 215
           +D+  +G + KK L  G    + P     V V                            
Sbjct: 37  LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHL-------------------------- 70

Query: 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
               LE+GT         E  L F   +  VI  LD     M   E A+VT + +Y +G 
Sbjct: 71  -QTSLENGTRV-----QEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYG- 123

Query: 276 VEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMN 310
                    IP  A L  EV +   +  +     +
Sbjct: 124 -PQGSRSPYIPPHAALCLEVTLKTAVDLEHHHHHH 157

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score =  118 bits (298), Expect = 2e-32
 Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 6/114 (5%)

Query: 44  GNSGIKKKLLKNGVDWD--TPEFGDEVTIHYVGTLLD-GTKFDSTRDRYDPLTFKLGTGQ 100
            + G+ K +LK G + +   P+ G+EVT+HYVG L   G  FDS+ DR  P  F L  G+
Sbjct: 14  ADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGE 73

Query: 101 VATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
           V  G D  + +M+K E       + S   +G EG  +S+P NSV+ FE+EL+S+
Sbjct: 74  VIKGWDICVSSMRKNEKC--LVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 32/150 (21%)

Query: 157 VDLSKDGGIVKKILEKGERD--ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
           V+L+ DGG++K IL+KG+      P   +EV V Y   L                     
Sbjct: 10  VELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLES------------------- 50

Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
                   G VF+   +D   P +F  ++ +VI G D   ++M+K E  +V I   YG+G
Sbjct: 51  -------TGKVFDSS-FDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYG 102

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDFIKEK 304
               +    +IP  + L +E+E++ F + +
Sbjct: 103 ---DEGCGESIPGNSVLLFEIELLSFRELE 129

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score =  117 bits (296), Expect = 3e-32
 Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 11/119 (9%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDS-------TRDRYDPLTFKL 96
           G     K +LK G   + P+ GD V   Y GTL DGT FD+        +    PL+FK+
Sbjct: 2   GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKV 61

Query: 97  GTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSW 153
           G G+V  G D  ++TM K E A     +  E  +G +G+    +PPN+ + FEVELV  
Sbjct: 62  GVGKVIRGWDEALLTMSKGEKA--RLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 40/139 (28%), Positives = 54/139 (38%), Gaps = 23/139 (16%)

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
                K IL+KG++   P   D V   Y   L DGT           F   D +      
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGT----------VF---DTNI----- 44

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
                  K     +PL F     +VI G D    TM K E A + I  E+ +G  +  + 
Sbjct: 45  ---QTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQP 99

Query: 282 LATIPSCAKLYYEVEMMDF 300
            A IP   KL +EVE++D 
Sbjct: 100 DAKIPPNTKLIFEVELVDI 118

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  115 bits (289), Expect = 6e-31
 Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 12/134 (8%)

Query: 302 KEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKL 361
               P          +  + ++EGN LFK G Y  A   Y +A      D +  D     
Sbjct: 12  GPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQD----- 63

Query: 362 VKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAE 421
               +     N AAC LKL+DY  A    SK ++ D  +VKALYRR+QA  ++  L  A 
Sbjct: 64  ----QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAV 119

Query: 422 LDIKKAIEADPQNR 435
           LD+++ +  +P+N+
Sbjct: 120 LDLQRCVSLEPKNK 133

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score =  113 bits (284), Expect = 9e-31
 Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 60  DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAV 119
                GD + +HY G L DGT+FDS+  +  P  F LGTGQV  G D G++ M + E   
Sbjct: 4   IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKR- 62

Query: 120 FTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDL 159
               +PSEL +G  G    +P  + + FEVEL+      +L
Sbjct: 63  -KLVIPSELGYGERGAPPKIPGGATLVFEVELLKIERRTEL 102

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           + Y  +LEDGT F+       QP  F     QVI G D+    M + E   + I  E G+
Sbjct: 14  MHYTGKLEDGTEFDSS-LPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGY 72

Query: 274 GNVEAKRDLATIPSCAKLYYEVEMMDFIKEK 304
           G   A      IP  A L +EVE++   +  
Sbjct: 73  GERGAP---PKIPGGATLVFEVELLKIERRT 100

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score =  112 bits (283), Expect = 4e-30
 Identities = 45/108 (41%), Positives = 59/108 (54%), Gaps = 4/108 (3%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+K + L  G        G  V++HY G L DG KFDS++DR DP  F LG G V  G 
Sbjct: 28  SGLKYEDLTEG-SGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGW 86

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVS 152
           D G+  MK     V   T+P +L +G  G    +PPN+ + FEVEL+ 
Sbjct: 87  DEGVQGMKVGG--VRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 34/116 (29%), Positives = 45/116 (38%), Gaps = 16/116 (13%)

Query: 187 VKYQVM-LGDGTMVAKTPEEG--VEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE 243
           +KY+ +  G G         G  V      V Y   L DG  F+    D   P  F+   
Sbjct: 30  LKYEDLTEGSG----AEARAGQTVS-----VHYTGWLTDGQKFDSS-KDRNDPFAFVLGG 79

Query: 244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMD 299
             VI G D     MK      +TI  + G+G   A      IP  A L +EVE++D
Sbjct: 80  GMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELLD 132

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score =  112 bits (282), Expect = 3e-29
 Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 22  EEEPGEVIESAAPLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTK 81
           + E  ++IE+      G       SG+K + L  G        G  V++HY G L DG K
Sbjct: 80  DMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEG-SGAEARAGQTVSVHYTGWLTDGQK 138

Query: 82  FDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPP 140
           FDS++DR DP  F LG G V  G D G+  MK         T+P +L +G  G    +PP
Sbjct: 139 FDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVR--RLTIPPQLGYGARGAAGVIPP 196

Query: 141 NSVVQFEVELVS 152
           N+ + FEVEL+ 
Sbjct: 197 NATLVFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 34/116 (29%), Positives = 45/116 (38%), Gaps = 16/116 (13%)

Query: 187 VKYQVM-LGDGTMVAKTPEEG--VEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE 243
           +KY+ +  G G         G  V      V Y   L DG  F+    D   P  F+   
Sbjct: 106 LKYEDLTEGSG----AEARAGQTVS-----VHYTGWLTDGQKFDSS-KDRNDPFAFVLGG 155

Query: 244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMD 299
             VI G D     MK      +TI  + G+G   A      IP  A L +EVE++D
Sbjct: 156 GMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAA---GVIPPNATLVFEVELLD 208

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score =  108 bits (271), Expect = 1e-28
 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 46  SGIKKKLLKNGVDW-DTPEFGDEVTIHYVGTL-LDGTKFDS--TRDRYDPLTFKLGTGQV 101
             +K ++L+         + GD + +HY G L  DG+ F S    +   P+ F LG  + 
Sbjct: 12  PEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEA 71

Query: 102 ATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVS 152
             G D G+  M   E       +P  L +G EG+  +PP S + F ++L+ 
Sbjct: 72  LKGWDQGLKGMCVGEKR--KLIIPPALGYGKEGKGKIPPESTLIFNIDLLE 120

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 52.7 bits (127), Expect = 8e-09
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 214 VSYIARLE-DGTVFEK-KGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEY 271
           V Y   LE DG++F     ++  QP+ F     + + G D+    M   E   + I    
Sbjct: 37  VHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPAL 96

Query: 272 GFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVP 306
           G+G    K     IP  + L + +++++      P
Sbjct: 97  GYG----KEGKGKIPPESTLIFNIDLLEI--RNGP 125

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score =  108 bits (271), Expect = 1e-28
 Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 15/120 (12%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+       G        G  +  HYVG L +G  FDS+ +R  PLTF++G G+V  G 
Sbjct: 12  SGLAFCDKVVG-YGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGW 70

Query: 106 DNGII------TMKKRECAVFTFTLPSELRFGVEG------RDSLPPNSVVQFEVELVSW 153
           D GI+       M        T  +P EL +G  G         +PP SV+ F++E +  
Sbjct: 71  DQGILGSDGIPPMLTGGKR--TLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 21/123 (17%)

Query: 187 VKYQVM-LGDGTMVAKTPEEGVEFYLKDVS--YIARLEDGTVFEKKGYDGEQPLEFITDE 243
           + +    +G G        +G     + +   Y+ +LE+G VF+   Y+  +PL F    
Sbjct: 14  LAFCDKVVGYG----PEAVKG-----QLIKAHYVGKLENGKVFDSS-YNRGKPLTFRIGV 63

Query: 244 EQVIAGLD------RVAATMKKEEWAIVTINHEYGFGN--VEAKRDLATIPSCAKLYYEV 295
            +VI G D           M       + I  E  +G+     K     IP  + L +++
Sbjct: 64  GEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDI 123

Query: 296 EMM 298
           E +
Sbjct: 124 EYI 126

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score =  105 bits (265), Expect = 3e-27
 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 22/151 (14%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+  + +  G     P   D+  +HY G L DGT FDS+R+R  P TF+    +V  G 
Sbjct: 37  SGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRP--NEVIKGW 94

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDGG 164
              +  M+  E   +   +P +L +GV G    +PP S ++F+VEL+S            
Sbjct: 95  TEALQLMR--EGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELIS------------ 140

Query: 165 IVKKILEKGERDASPGDLDEVLVKYQVMLGD 195
                ++ G +  +  ++DE+L K +    D
Sbjct: 141 -----IKDGGKGRTAEEVDEILRKAEEDRED 166

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 34/164 (20%)

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           G+V + + +G    +P   D+  V Y                G            RL DG
Sbjct: 38  GLVFQRIARGSGKRAPAIDDKCEVHY---------------TG------------RLRDG 70

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
           TVF+    +  +P  F  +  +VI G       M++ +   + I ++  +G         
Sbjct: 71  TVFDSS-RERGKPTTFRPN--EVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGG---G 124

Query: 284 TIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNL 327
            IP  + L ++VE++  IK+        +        +++  ++
Sbjct: 125 MIPPYSPLEFDVELIS-IKDGGKGRTAEEVDEILRKAEEDREDM 167

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 95.1 bits (237), Expect = 1e-23
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 15/120 (12%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
            +A   KE+GN LF   KY  A   Y +A         +               + N A 
Sbjct: 7   PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY---------------YTNRAL 51

Query: 376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
           C LK++  + A+  C + L+ D  +VKA +   Q  +E+     A  ++++A     + R
Sbjct: 52  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 95.1 bits (237), Expect = 2e-23
 Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 19/134 (14%)

Query: 302 KEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKL 361
           +++ P +    G ++ A   K + N  FK   YE A K Y++A +    +  +       
Sbjct: 1   RDEPPAD----GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY------- 49

Query: 362 VKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAE 421
                   + N +   L+ + Y  A+   ++ ++ D   +K  YRRA + M +     A 
Sbjct: 50  --------YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 101

Query: 422 LDIKKAIEADPQNR 435
            D +  ++  P ++
Sbjct: 102 RDYETVVKVKPHDK 115

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 93.9 bits (234), Expect = 2e-23
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 15/119 (12%)

Query: 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACC 377
           A   + EG   F    +  A K Y +      ED                  + N AA  
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG---------------YSNRAAAL 48

Query: 378 LKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
            KL  +  AI  C+K ++ D + V+A  R+A A + + +   A   +  A   D +  N
Sbjct: 49  AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN 107

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 93.4 bits (233), Expect = 3e-23
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 15/119 (12%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
           E A  +K +GN  FK G Y  A + YN+A     E+                  + N AA
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAIL---------------YSNRAA 55

Query: 376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
           C  KL ++Q A++ C   +  D   +K   R+A   + + +   A+   + A++ DP N
Sbjct: 56  CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 95.6 bits (238), Expect = 6e-23
 Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 5/107 (4%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           +G+  ++++ G   + P+  D V ++Y GTL+DG +FD++  R +PL+F+L    V  G 
Sbjct: 121 TGLVYQVVEAG-KGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGW 177

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVS 152
             G+  +K  +       +P EL +G  G   +PPNS + F+VEL+ 
Sbjct: 178 TEGLKNIK--KGGKIKLVIPPELAYGKAGVPGIPPNSTLVFDVELLD 222

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 35/136 (25%)

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           G+V +++E G+   +P D D V+V Y               +G             L DG
Sbjct: 122 GLVYQVVEAGK-GEAPKDSDTVVVNY---------------KG------------TLIDG 153

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
             F+   Y   +PL F  D   VI G       +KK     + I  E  +G       + 
Sbjct: 154 KEFDNS-YTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGK----AGVP 206

Query: 284 TIPSCAKLYYEVEMMD 299
            IP  + L ++VE++D
Sbjct: 207 GIPPNSTLVFDVELLD 222

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 92.3 bits (230), Expect = 9e-23
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 15/120 (12%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
           + A   K +GN  F+ G Y +A K Y +A     +D                  + N AA
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL---------------YSNRAA 58

Query: 376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
           C  KL ++Q A++ C + +  +   +K   R+A A   + D   A    +KA++ D   +
Sbjct: 59  CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 91.9 bits (229), Expect = 1e-22
 Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 15/128 (11%)

Query: 309 MNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVS 368
           + ++     A R K EGN   K   +E A   Y KA +    +  +              
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY-------------- 48

Query: 369 CWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAI 428
            + N AA   KL +Y GA++ C + +  D    KA  R   A   +   + A    KKA+
Sbjct: 49  -FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107

Query: 429 EADPQNRN 436
           E DP N  
Sbjct: 108 ELDPDNET 115

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 92.9 bits (231), Expect = 1e-22
 Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 15/121 (12%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
             + + K EGN      +Y +A   Y +A      +  +                 N AA
Sbjct: 9   PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIY---------------LSNRAA 53

Query: 376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
                  ++ A E        D    KA  R   A  ++AD   A+   +K IEA+    
Sbjct: 54  AYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113

Query: 436 N 436
           +
Sbjct: 114 S 114

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 94.4 bits (235), Expect = 1e-22
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG++ K++ +G +   P   D VT+ Y G L+DGT FDST     P TF++   QV  G 
Sbjct: 106 SGLQYKVINSG-NGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGW 162

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVS 152
              +  M     + +   +PS L +G       + PN  + F++ L+S
Sbjct: 163 TEALQLMP--AGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 27/135 (20%), Positives = 40/135 (29%), Gaps = 34/135 (25%)

Query: 168 KILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFE 227
           K++  G     PG  D V V+Y                G            RL DGTVF+
Sbjct: 111 KVINSGN-GVKPGKSDTVTVEY---------------TG------------RLIDGTVFD 142

Query: 228 KKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPS 287
                  +P  F     QVI G       M       + +     +G          I  
Sbjct: 143 -STEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVG---GPIGP 196

Query: 288 CAKLYYEVEMMDFIK 302
              L +++ ++   K
Sbjct: 197 NETLIFKIHLISVKK 211

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 90.3 bits (225), Expect = 3e-22
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 15/120 (12%)

Query: 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSA 374
           +E     KE+GN     G  + A + Y++A      +                  + N +
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVL---------------YSNRS 45

Query: 375 ACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
           A   K  DYQ A E   K +D      K   R+A A   +     A+   ++ ++ +  N
Sbjct: 46  AAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 92.3 bits (229), Expect = 3e-21
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 15/120 (12%)

Query: 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAAC 376
           +A   KE+GN LF   KY  A   Y +A         +               + N A C
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY---------------YTNRALC 47

Query: 377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
            LK++  + A+  C + L+ D  +VKA +   Q  +E+     A  ++++A     + R 
Sbjct: 48  YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 88.2 bits (219), Expect = 2e-20
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 9/108 (8%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
            GI    L  G     P+    V + YVG L DG  FD +     P  F+L    V +G 
Sbjct: 117 DGILMTELTPG-TGPKPDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRL--DSVISGW 170

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVS 152
            + +  M     A +   +PS+  +G EG  D + P + + FE+EL++
Sbjct: 171 TSALQNMP--TGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 29/139 (20%), Positives = 43/139 (30%), Gaps = 37/139 (26%)

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           GI+   L  G     P     V V+Y                G            RL DG
Sbjct: 118 GILMTELTPGT-GPKPDANGRVEVRY---------------VG------------RLPDG 149

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
            +F++      QP  F  D   VI+G       M       + I  +  +G   A     
Sbjct: 150 KIFDQST----QPQWFRLD--SVISGWTSALQNMPTGAKWRLVIPSDQAYGAEGAG---D 200

Query: 284 TIPSCAKLYYEVEMMDFIK 302
            I     L +E+E++   +
Sbjct: 201 LIDPFTPLVFEIELIAVSQ 219

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 15/124 (12%)

Query: 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLN 372
           G ++ A   K + N  FK   YE A K Y++A +    +  +               + N
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY---------------YGN 45

Query: 373 SAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP 432
            +   L+ + Y  A+   ++ ++ D   +K  YRRA + M +     A  D +  ++  P
Sbjct: 46  RSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP 105

Query: 433 QNRN 436
            +++
Sbjct: 106 HDKD 109

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 80.8 bits (200), Expect = 1e-18
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 22/126 (17%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
           + A ++KE GN  +K   ++ A K Y+KA +    + ++                 N AA
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY---------------ITNQAA 46

Query: 376 CCLKLKDYQGAIELCSKVLDCDCHN-------VKALYRRAQAYMEIADLILAELDIKKAI 428
              +  DY    ELC K ++    N        KA  R   +Y +      A     K++
Sbjct: 47  VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106

Query: 429 EADPQN 434
                 
Sbjct: 107 AEHRTP 112

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 17/59 (28%), Positives = 26/59 (44%)

Query: 377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
             K KD+  A++   K  + D  N+  +  +A  Y E  D        +KAIE   +NR
Sbjct: 14  AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR 72

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 83.9 bits (208), Expect = 5e-18
 Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 11/127 (8%)

Query: 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSC 369
            +  +++   +  E    L ++G+Y  A  KY      +  + S  +   +         
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV---MKTEPSVAEYTVRS-------- 274

Query: 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429
                 C  K +    AI +CS+VL  +  NV AL  RA+AY+       A  D + A E
Sbjct: 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334

Query: 430 ADPQNRN 436
            +  ++ 
Sbjct: 335 HNENDQQ 341

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 71.1 bits (175), Expect = 1e-13
 Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 15/113 (13%)

Query: 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK 381
            E G  L   G+   A  +++ A   V  D                  +   A   L + 
Sbjct: 7   LELGKKLLAAGQLADALSQFHAA---VDGDPDNYI------------AYYRRATVFLAMG 51

Query: 382 DYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + A+   +KV+        A  +R    ++   L  AE D KK ++++P  
Sbjct: 52  KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 104

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 26/110 (23%), Positives = 46/110 (41%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G+LL K GK + A   + K       +    + E +LVK+  +    + A       DY 
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            AI    K+L+    + +    RA+ +++  +   A  D+K A +    N
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN 187

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 15/121 (12%)

Query: 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNS 373
           K +   R + +    F    Y  A    +K  +    D                      
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD---------------AELRELR 160

Query: 374 AACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433
           A C +K  + + AI            N +A Y+ +  Y ++ D  L+  ++++ ++ D  
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220

Query: 434 N 434
           +
Sbjct: 221 H 221

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 16/68 (23%), Positives = 22/68 (32%)

Query: 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKK 426
           V   L      L       A+      +D D  N  A YRRA  ++ +     A  D+ K
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 427 AIEADPQN 434
            I      
Sbjct: 63  VIALKMDF 70

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 11/122 (9%), Positives = 30/122 (24%), Gaps = 27/122 (22%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
                K G+  +A      A           +             +   +    +L D++
Sbjct: 161 AECFIKEGEPRKAISDLKAA---SKLKSDNTE------------AFYKISTLYYQLGDHE 205

Query: 385 GAIELCSKVLDCDCHNVKALY------------RRAQAYMEIADLILAELDIKKAIEADP 432
            ++    + L  D  + +                 A+  +       A    +  ++ +P
Sbjct: 206 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 265

Query: 433 QN 434
             
Sbjct: 266 SV 267

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 76.9 bits (190), Expect = 3e-17
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 22/126 (17%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
           +AA  +K+ GN  +K   +E+A   Y+KA +    + +F               + N AA
Sbjct: 6   DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITF---------------YNNKAA 50

Query: 376 CCLKLKDYQGAIELCSKVLDCDCHN-------VKALYRRAQAYMEIADLILAELDIKKAI 428
              + K +   ++ C K ++             KA+ R   A+ +  DL LA     +++
Sbjct: 51  VYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110

Query: 429 EADPQN 434
                 
Sbjct: 111 SEFRDP 116

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 14/59 (23%), Positives = 23/59 (38%)

Query: 377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
             K KD++ A     K ++ D  N+     +A  Y E           +KA+E   + R
Sbjct: 18  AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 81.7 bits (202), Expect = 5e-17
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 11/128 (8%)

Query: 309 MNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVS 368
             +  +++   +  E    L ++G+Y  A  KY                         V 
Sbjct: 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI-----------AEYTVR 296

Query: 369 CWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAI 428
                  C  K +    AI +CS+VL  +  NV AL  RA+AY+       A  D + A 
Sbjct: 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ 356

Query: 429 EADPQNRN 436
           E +  ++ 
Sbjct: 357 EHNENDQQ 364

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 15/123 (12%)

Query: 312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWL 371
              +    +  E G  L   G+   A  +++ A D   ++                  + 
Sbjct: 20  FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------------YIAYY 64

Query: 372 NSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431
             A   L +   + A+   +KV+        A  +R    ++   L  AE D KK ++++
Sbjct: 65  RRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 124

Query: 432 PQN 434
           P  
Sbjct: 125 PSE 127

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 25/110 (22%), Positives = 46/110 (41%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G+LL K GK + A   + K       +    + + +L+KS  +    + A       DY 
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            AI    K+L+    + +    RA+ +++  +   A  D+K A +    N
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 15/121 (12%)

Query: 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNS 373
           K +   R + +    F +G Y  A    +K  +    D                      
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD---------------AELRELR 183

Query: 374 AACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433
           A C +K  + + AI            N +A Y+ +  Y ++ D  L+  ++++ ++ D  
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243

Query: 434 N 434
           +
Sbjct: 244 H 244

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 12/125 (9%), Positives = 32/125 (25%), Gaps = 27/125 (21%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
                K G+  +A      A           +             +   +    +L D++
Sbjct: 184 AECFIKEGEPRKAISDLKAA---SKLKNDNTE------------AFYKISTLYYQLGDHE 228

Query: 385 GAIELCSKVLDCDCHNVKA------------LYRRAQAYMEIADLILAELDIKKAIEADP 432
            ++    + L  D  + +             L   A+  +       A    +  ++ +P
Sbjct: 229 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 288

Query: 433 QNRNH 437
               +
Sbjct: 289 SIAEY 293

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 15/88 (17%), Positives = 23/88 (26%), Gaps = 23/88 (26%)

Query: 370 WLNSAACCLKLKDY-----------------------QGAIELCSKVLDCDCHNVKALYR 406
             +S         Y                         A+      +D D  N  A YR
Sbjct: 6   HHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYR 65

Query: 407 RAQAYMEIADLILAELDIKKAIEADPQN 434
           RA  ++ +     A  D+ K I+     
Sbjct: 66  RATVFLAMGKSKAALPDLTKVIQLKMDF 93

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 17/124 (13%)

Query: 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSA 374
           +    ++KE+GN LFK G Y  A   Y++      ++                  + N A
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVG---------------YSNKA 45

Query: 375 ACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA-DPQ 433
              +KL +Y  AI++C + L           R    Y  +     A   ++  +   D  
Sbjct: 46  MALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDEL 104

Query: 434 NRNH 437
              +
Sbjct: 105 PEGY 108

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 68.5 bits (168), Expect = 6e-14
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
              V +H+   L DGT  +STR+   P  F+LG   ++ GL+  ++ +K  +    TF+L
Sbjct: 28  NSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDK--TTFSL 85

Query: 125 PSELRFG 131
             +  FG
Sbjct: 86  EPDAAFG 92

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           V +  +L+DGT  E    +  +P  F   +  +  GL++    +K  +    ++  +  F
Sbjct: 33  VHFTLKLDDGTTAEST-RNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAF 91

Query: 274 G 274
           G
Sbjct: 92  G 92

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 70.7 bits (174), Expect = 6e-14
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 15/115 (13%)

Query: 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK 381
           + EG   F    +  A K Y +    +                     + N AA   KL 
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEM---IKRAPEDAR------------GYSNRAAALAKLM 187

Query: 382 DYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
            +  AI  C+K ++ D + V+A  R+A A + + +   A   +  A   D +  N
Sbjct: 188 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN 242

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 67.6 bits (166), Expect = 5e-13
 Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK 381
           K EGN  +K  +++ A + YNKA + + +D ++                 N AA   +  
Sbjct: 9   KAEGNKFYKARQFDEAIEHYNKAWE-LHKDITY---------------LNNRAAAEYEKG 52

Query: 382 DYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
           +Y+ AI   +  ++            ++++  I +      D+KK IE   ++
Sbjct: 53  EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS 105

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 55.3 bits (134), Expect = 9e-09
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
            ++L K    E+  KK    A                V   +               D+ 
Sbjct: 112 ADILTKLRNAEKELKKAEAEAY---------------VNPEKAEEARLEGKEYFTKSDWP 156

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            A++  ++++     + +    RA A  ++     A  D  KAIE DP  
Sbjct: 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 12/110 (10%), Positives = 31/110 (28%), Gaps = 16/110 (14%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
               ++ G+YE A    N A   V +      D            +   +    ++ +  
Sbjct: 45  AAAEYEKGEYETAISTLNDA---VEQGREMRAD------------YKVISKSFARIGNAY 89

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             +    K ++         +R A    ++ +        +     +P+ 
Sbjct: 90  HKLGDLKKTIEYY-QKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEK 138

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 46.0 bits (110), Expect = 8e-06
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 1/67 (1%)

Query: 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429
                    K + +  AIE  +K  +    ++  L  RA A  E  +   A   +  A+E
Sbjct: 8   EKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVE 66

Query: 430 ADPQNRN 436
              + R 
Sbjct: 67  QGREMRA 73

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 17/91 (18%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
              L K   +  A    NKA   + +D +FV              ++  A   + +K+Y 
Sbjct: 180 AAALAKLMSFPEAIADCNKA---IEKDPNFVR------------AYIRKATAQIAVKEYA 224

Query: 385 GAIELCSKVLDCDCHNVKALYRR--AQAYME 413
            A+E        D         R   Q Y +
Sbjct: 225 SALETLDAARTKDAEVNNGSSAREIDQLYYK 255

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 17/114 (14%)

Query: 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK 381
           K++GN  F+N KY+ A K YN A +   ED  F               + N +AC + + 
Sbjct: 10  KDKGNQFFRNKKYDDAIKYYNWALEL-KEDPVF---------------YSNLSACYVSVG 53

Query: 382 DYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKK-AIEADPQN 434
           D +  +E+ +K L+      K L RRA A   +     A  D+   ++  D  +
Sbjct: 54  DLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFND 107

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 67.1 bits (164), Expect = 3e-12
 Identities = 24/113 (21%), Positives = 34/113 (30%), Gaps = 16/113 (14%)

Query: 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK 381
           +  G   F       A +   KA                +    RV+ ++  A       
Sbjct: 241 EHTGIFKFLKNDPLGAHEDIKKA----------------IELFPRVNSYIYMALIMADRN 284

Query: 382 DYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
           D         K L  D +N    Y R Q    + +   A  D  KA E DP+N
Sbjct: 285 DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G + F    Y++AGK ++KA      D   +              ++  A    +   + 
Sbjct: 311 GQMNFILQNYDQAGKDFDKA---KELDPENIF------------PYIQLACLAYRENKFD 355

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
               L S+         +     A+   +  D   A      AIE + + 
Sbjct: 356 DCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 13/110 (11%), Positives = 29/110 (26%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
             ++            ++KA   +  D +                + +       L++Y 
Sbjct: 277 ALIMADRNDSTEYYNYFDKA---LKLDSNNSS------------VYYHRGQMNFILQNYD 321

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            A +   K  + D  N+    + A            E    +A    P+ 
Sbjct: 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA 371

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 16/119 (13%), Positives = 39/119 (32%), Gaps = 24/119 (20%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK----- 379
             +L     +++A K+Y+ A   +  +                  ++  A    K     
Sbjct: 379 AEILTDKNDFDKALKQYDLA---IELENKLDG------------IYVGIAPLVGKATLLT 423

Query: 380 ----LKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
               ++++  A  L  K    D  + +A    AQ  ++  D+  A    +++ +     
Sbjct: 424 RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429
             +      + K Y  AI+  +  L+     V      +  Y+ + DL        KA+E
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKALE 67

Query: 430 ADPQN 434
             P  
Sbjct: 68  LKPDY 72

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 20/133 (15%), Positives = 39/133 (29%), Gaps = 3/133 (2%)

Query: 302 KEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKL 361
            E        +   +            F   K E     Y+++ +    D   ++    L
Sbjct: 141 TELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNE---ADKELMNGLSNL 197

Query: 362 VKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAE 421
            K    S      +     + ++  ++  ++          +L           D + A 
Sbjct: 198 YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAH 257

Query: 422 LDIKKAIEADPQN 434
            DIKKAIE  P+ 
Sbjct: 258 EDIKKAIELFPRV 270

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 15/115 (13%)

Query: 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD 382
             G   ++ GK++ A K +         D                  +L   AC   L  
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQAL---CMLDHYDAR------------YFLGLGACRQSLGL 67

Query: 383 YQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH 437
           Y+ A++  S     D +  +  +  A+ ++++ DL  AE     A         H
Sbjct: 68  YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 41.3 bits (97), Expect = 9e-05
 Identities = 4/65 (6%), Positives = 13/65 (20%)

Query: 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429
                    +   +  A ++   +   D ++ +           +     A         
Sbjct: 21  LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80

Query: 430 ADPQN 434
            D   
Sbjct: 81  MDINE 85

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 38.6 bits (90), Expect = 9e-04
 Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 17/91 (18%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G      G YE+A + Y+  A     +                    ++A C L+L D  
Sbjct: 59  GACRQSLGLYEQALQSYSYGALMDINE---------------PRFPFHAAECHLQLGDLD 103

Query: 385 GAIELCSKVLDCDCHN--VKALYRRAQAYME 413
           GA                 +AL  RA A +E
Sbjct: 104 GAESGFYSARALAAAQPAHEALAARAGAMLE 134

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 62.3 bits (152), Expect = 7e-11
 Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 6/110 (5%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G + F+NG+++ A K +  A + +   G+      ++          N    C KLK Y 
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGN------EVTVDKWEPLLNNLGHVCRKLKKYA 253

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            A++   + L     N          +  + +   A      A+     +
Sbjct: 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 13/109 (11%), Positives = 28/109 (25%), Gaps = 16/109 (14%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
               + N  ++   K  +   +                     SC        ++L    
Sbjct: 29  AERHYYNCDFKMCYKLTSVVME---------------KDPFHASCLPVHIGTLVELNKAN 73

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLI-LAELDIKKAIEADP 432
               L  K++D    N  + +     Y+ +      A   + KA   + 
Sbjct: 74  ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 14/112 (12%), Positives = 29/112 (25%), Gaps = 15/112 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G+      ++++A   Y  AA  +                      L          + +
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGC---------------HLPMLYIGLEYGLTNNSK 176

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
            A    S+ L     +   ++       +  +   AE     A+E      N
Sbjct: 177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN 228

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 16/111 (14%)

Query: 325 GNLLFKNGK-YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383
           G      G   E A +  +KA    + + ++               W+          ++
Sbjct: 97  GCYYLMVGHKNEHARRYLSKA---TTLEKTYGP------------AWIAYGHSFAVESEH 141

Query: 384 QGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             A+                +      Y    +  LAE    +A+   P++
Sbjct: 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 13/119 (10%), Positives = 29/119 (24%), Gaps = 24/119 (20%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G         + A + +++A     ED                           +  +++
Sbjct: 166 GLEYGLTNNSKLAERFFSQALSIAPED---------------PFVMHEVGVVAFQNGEWK 210

Query: 385 GAIELCSKVLDCDC---------HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            A +     L+                 L        ++     A    ++A+   PQN
Sbjct: 211 TAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN 269

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 11/65 (16%), Positives = 23/65 (35%)

Query: 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429
            ++ A       D++   +L S V++ D  +   L       +E+           K ++
Sbjct: 25  VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84

Query: 430 ADPQN 434
             P N
Sbjct: 85  LYPSN 89

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 63.2 bits (154), Expect = 7e-11
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 16/110 (14%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G   F       A     ++                +      + ++  A      ++ Q
Sbjct: 250 GIFHFLKNNLLDAQVLLQES----------------INLHPTPNSYIFLALTLADKENSQ 293

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
              +   K +D +       Y R Q Y  + D   A+ D +KA   +P+N
Sbjct: 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 15/125 (12%)

Query: 308 EMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRV 367
            ++   +   A + K  GN  F    +  A K Y  A +    +  F             
Sbjct: 15  GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF------------- 61

Query: 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKA 427
             + N +AC +   D +  IE  +K L+    + KAL RRA A   + +   A  D+   
Sbjct: 62  --YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119

Query: 428 IEADP 432
                
Sbjct: 120 SLNGD 124

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 13/117 (11%)

Query: 325 GNLLFKNGKYERAGKKYNKA-------ADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACC 377
             +L   G ++ A K+Y+ A              G        + K+  ++   +     
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL------IGKATILARQSSQDPTQ 438

Query: 378 LKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
           L  + +  AI+L +K  + D  + +A    AQ  +++  +  A    + +       
Sbjct: 439 LDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 11/103 (10%)

Query: 332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS 391
           G +        +           +   Q+   +++     N        K++  AI+   
Sbjct: 1   GSHMNGEPDIAQLKG--------LSPSQRQAYAVQ---LKNRGNHFFTAKNFNEAIKYYQ 49

Query: 392 KVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             ++ D +        +  Y+   DL        KA+E  P +
Sbjct: 50  YAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH 92

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 53.2 bits (128), Expect = 9e-08
 Identities = 18/177 (10%), Positives = 56/177 (31%), Gaps = 18/177 (10%)

Query: 264 IVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAA---GR 320
           ++++N ++   ++E   +        K+  E    D    +    + +   + +      
Sbjct: 118 VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDE--GRGSQVLPSNTSLASFFGIFD 175

Query: 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL 380
              E + +  +  Y+ A    + A              Q+L  +      + +       
Sbjct: 176 SHLEVSSVNTSSNYDTAYALLSDAL-------------QRLYSATDEGYLVANDLLTKST 222

Query: 381 KDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH 437
             Y   +   +       +   AL      +    +L+ A++ ++++I   P   ++
Sbjct: 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSY 279

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 16/110 (14%), Positives = 29/110 (26%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
              L      +   K + KA   V  +  +               + +       L+DY+
Sbjct: 283 ALTLADKENSQEFFKFFQKA---VDLNPEYPP------------TYYHRGQMYFILQDYK 327

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            A E   K    +  NV    + A    +      +E    +     P  
Sbjct: 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 14/110 (12%), Positives = 29/110 (26%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G + F    Y+ A + + KA    S +   V              ++  A    K   + 
Sbjct: 317 GQMYFILQDYKNAKEDFQKA---QSLNPENVY------------PYIQLACLLYKQGKFT 361

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            +    ++         +     A+   +  D   A      A   +   
Sbjct: 362 ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 18/126 (14%), Positives = 33/126 (26%), Gaps = 31/126 (24%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
             LL+K GK+  +   +N+      +  +  +                 A       D+ 
Sbjct: 351 ACLLYKQGKFTESEAFFNET---KLKFPTLPE------------VPTFFAEILTDRGDFD 395

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLIL----------------AELDIKKAI 428
            AI+        +    K          +   L                  A   + KA 
Sbjct: 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455

Query: 429 EADPQN 434
           E DP++
Sbjct: 456 ELDPRS 461

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
              V++ Y     DG   D +     PL +  G G + +GL+  +   +  +   F   +
Sbjct: 6   DLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGD--KFDVAV 62

Query: 125 PSELRFG 131
            +   +G
Sbjct: 63  GANDAYG 69

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           ++Y  R EDG + ++       PL+++     +I+GL+      +  +   V +     +
Sbjct: 11  LAYQVRTEDGVLVDES--PVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAY 68

Query: 274 G 274
           G
Sbjct: 69  G 69

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 8/110 (7%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G + F     + A   +  A   V +  S         +    + W N      KLK Y 
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQS--------NEKPWAATWANLGHAYRKLKMYD 533

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            AI+  ++ L    ++       A  Y+      LA   + +++   P  
Sbjct: 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 13/110 (11%), Positives = 29/110 (26%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
            + LF   ++        K    +  D   +D             +    A   +  +  
Sbjct: 312 ADTLFVRSRFIDVLAITTKI---LEIDPYNLD------------VYPLHLASLHESGEKN 356

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
               + + ++D               Y+ +  +  A     K+   DPQ 
Sbjct: 357 KLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 13/110 (11%), Positives = 32/110 (29%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G       K   A + ++K+    + D  F               W+  A       ++ 
Sbjct: 380 GIYYLCVNKISEARRYFSKS---STMDPQFGP------------AWIGFAHSFAIEGEHD 424

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            AI   +                   +M++ +++LA   ++ +      +
Sbjct: 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 11/110 (10%), Positives = 30/110 (27%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
                 +    R  + Y  + + + +                    L  A        + 
Sbjct: 278 KLNKTSHEDELRRAEDYLSSINGLEKS---------------SDLLLCKADTLFVRSRFI 322

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + + +K+L+ D +N+        +  E  +     L     ++  P+ 
Sbjct: 323 DVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 15/110 (13%), Positives = 24/110 (21%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
              L ++G+  +     N   D                   +   WL      L +    
Sbjct: 346 LASLHESGEKNKLYLISNDLVD---------------RHPEKAVTWLAVGIYYLCVNKIS 390

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            A    SK    D     A    A ++    +   A      A       
Sbjct: 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 13/117 (11%), Positives = 23/117 (19%), Gaps = 22/117 (18%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G    + G    A +    +      D                              D Q
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQYD---------------PLLLNELGVVAFNKSDMQ 492

Query: 385 GAI-------ELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            AI        L  K    +            AY ++     A   + + +     +
Sbjct: 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 13/112 (11%), Positives = 31/112 (27%), Gaps = 15/112 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
            +     G++++A   Y  AA                        +L      ++L +  
Sbjct: 414 AHSFAIEGEHDQAISAYTTAARLFQGT---------------HLPYLFLGMQHMQLGNIL 458

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
            A E          ++   L          +D+  A    + A+    + ++
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 21/132 (15%), Positives = 37/132 (28%), Gaps = 22/132 (16%)

Query: 325 GNLLFKNGKYERAGKKYNKA-------ADCVSEDGSF----VDDEQKLVKSLR------- 366
           G +      ++RA + Y +A        +   +  S      D+E  LV  L        
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266

Query: 367 ----VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAEL 422
               +             +D     E     ++    +   L  +A      +  I    
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326

Query: 423 DIKKAIEADPQN 434
              K +E DP N
Sbjct: 327 ITTKILEIDPYN 338

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 32/126 (25%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
             +    G Y RA K      D  +                  +C   +A C +KL D+Q
Sbjct: 124 AQVYCCTGDYARA-KCLLTKEDLYNRS---------------SACRYLAAFCLVKLYDWQ 167

Query: 385 GAIELC------------SKVLDCDCHNVK----ALYRRAQAYMEIADLILAELDIKKAI 428
           GA+ L             +  L      +K      Y R Q Y  +++   A+   K+A+
Sbjct: 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL 227

Query: 429 EADPQN 434
             D + 
Sbjct: 228 MVDAKC 233

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 15/89 (16%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G+   K   Y+ A    N+     + D                +     A   L  K   
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLLLSTND---------------ANVHTAIALVYLHKKIPG 567

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYME 413
            AI    + L    + + A     +A  E
Sbjct: 568 LAITHLHESLAISPNEIMASDLLKRALEE 596

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 12/110 (10%), Positives = 30/110 (27%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
               +  G+ E A   +                         V   +  AA     + +Q
Sbjct: 43  AYDFYNKGRIEEAEVFFRFLCI---------------YDFYNVDYIMGLAAIYQIKEQFQ 87

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            A +L +       ++   ++   Q  + +   + A+   +  I+     
Sbjct: 88  QAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 9/65 (13%), Positives = 15/65 (23%)

Query: 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429
             + A         + A      +   D +NV  +   A  Y        A      A  
Sbjct: 39  IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98

Query: 430 ADPQN 434
               +
Sbjct: 99  LGKND 103

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 15/80 (18%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDR-------------YDPLTFKLGTGQVATGLDNGIIT 111
           G ++ + Y+G L  G  FD++ +              Y+PL F +G GQ+  G +  ++ 
Sbjct: 5   GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64

Query: 112 MKKRECAVFTFTLPSELRFG 131
           M+  +    T  +P+E  +G
Sbjct: 65  MEVGDE--KTVKIPAEKAYG 82

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G +L K G+   A ++Y  A D  +                 +  +    +      ++ 
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDRDTTR---------------LDMYGQIGSYFYNKGNFP 125

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            AI+   K +     + K  Y   QAY    + + A+    K +E  P  
Sbjct: 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 22/132 (16%)

Query: 325 GNLLFKNGKYERAGKKYNKA--------------ADCVSEDGSF---VDDEQKLVKSLR- 366
            + LFKN  Y  A + +NK               A C  E   +     D +     +  
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA 69

Query: 367 ----VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAEL 422
                + +       +K      AI+     +D D   +    +    +    +  LA  
Sbjct: 70  TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQ 129

Query: 423 DIKKAIEADPQN 434
            ++K I     +
Sbjct: 130 YMEKQIRPTTTD 141

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 18/113 (15%), Positives = 31/113 (27%), Gaps = 18/113 (15%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G+  +  G +  A +   K    +    +                +          K+Y 
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQ---IRPTTTDPKV------------FYELGQAYYYNKEYV 159

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYM---EIADLILAELDIKKAIEADPQN 434
            A     KVL+   +       RA+A           LA+   +K IE     
Sbjct: 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 20/121 (16%), Positives = 34/121 (28%), Gaps = 26/121 (21%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL---- 380
           G   + N +Y +A   + K  +                       +L  A          
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLELKPNI---------------YIGYLWRARANAAQDPDT 193

Query: 381 ------KDYQGAIELCSKVLDCDCHN-VKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433
                   Y+  IE+C+          ++A    A  Y    D + A+   K  +  DP 
Sbjct: 194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253

Query: 434 N 434
           N
Sbjct: 254 N 254

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDI---KK 426
               A    K  +Y  AIE+ +K+     ++     RRA  Y E+A   LA+ DI     
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65

Query: 427 AIEADPQN 434
            + A    
Sbjct: 66  KVNATKAK 73

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 14/84 (16%), Positives = 22/84 (26%), Gaps = 7/84 (8%)

Query: 330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL 389
            + K   A   Y K  +  +  G+         K   +      A      +D   A   
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGA-------KYKDELIEANEYIAYYYTINRDKVKADAA 243

Query: 390 CSKVLDCDCHNVKALYRRAQAYME 413
              +L  D  N KA+         
Sbjct: 244 WKNILALDPTNKKAIDGLKMKLEH 267

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 57.8 bits (140), Expect = 5e-10
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
              V++ Y     DG   D +     PL +  G G + +GL+  +   +  +   F   +
Sbjct: 6   DLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGD--KFDVAV 62

Query: 125 PSELRFG 131
            +   +G
Sbjct: 63  GANDAYG 69

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGF 273
           ++Y  R EDG + ++       PL+++     +I+GL+      +  +   V +     +
Sbjct: 11  LAYQVRTEDGVLVDES--PVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAY 68

Query: 274 G 274
           G
Sbjct: 69  G 69

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 56.1 bits (136), Expect = 8e-10
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 2/74 (2%)

Query: 58  DWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKREC 117
           + D         I Y       +    +    +PL F +GT Q+  GL+  ++  +  E 
Sbjct: 3   NHDLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEW 62

Query: 118 AVFTFTLPSELRFG 131
                 +  E  +G
Sbjct: 63  --EEVVIAPEEAYG 74

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 57.4 bits (139), Expect = 9e-10
 Identities = 14/113 (12%), Positives = 36/113 (31%), Gaps = 1/113 (0%)

Query: 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGS-FVDDEQKLVKSLRVSCWLNSAACCLKLK 381
           ++ +   + G+  +A   + +      +    +          +        A    K +
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 382 DYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
           +Y  A     ++L    +NV  L   A+  +       A    +K ++ +  N
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 16/129 (12%)

Query: 307 WEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLR 366
           W   ++    ++    E      KN  Y++A   Y +       +               
Sbjct: 43  WTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN--------------- 87

Query: 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDI-K 425
           V C    A   +     + A+ +  K+L  +  N+ A       Y   A+    +L+   
Sbjct: 88  VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDY 147

Query: 426 KAIEADPQN 434
           K + +  + 
Sbjct: 148 KKLSSPTKM 156

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 15/111 (13%), Positives = 30/111 (27%), Gaps = 16/111 (14%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSA-ACCLKLKDY 383
             +    G+ + A + Y K    +  +   +               +       L  +  
Sbjct: 95  AEMQVCRGQEKDALRMYEKI---LQLEADNLA------------ANIFLGNYYYLTAEQE 139

Query: 384 QGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
           +  +E   K L        A YR   + +       A   ++K I   P  
Sbjct: 140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 13/110 (11%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G  L++  +YE A ++  +A+             Q  +   R   + N     L++K   
Sbjct: 112 GGFLYEQKRYEEAYQRLLEAS-------------QDTLYPERSRVFENLGLVSLQMKKPA 158

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            A E   K L  + +        A    +  + + A        +   QN
Sbjct: 159 QAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 16/99 (16%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 341 YNKAADCVSEDGSFVDDEQKLVKSLR-----VSCWLNSAACCLKLKDYQGAIELCSKVLD 395
           ++ ++  V         +Q  +K+ +        ++      L+  + + A     K L+
Sbjct: 8   HHHSSGLVPRGS--HMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE 65

Query: 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            D  +  A    A  +    +  LA+ + +KA+ +D +N
Sbjct: 66  IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN 104

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 56.1 bits (135), Expect = 7e-09
 Identities = 12/118 (10%), Positives = 30/118 (25%), Gaps = 10/118 (8%)

Query: 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLN 372
           G  + A    +    L +     +A   Y +AA     +                     
Sbjct: 110 GTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEER---------LRQAAELIGK 160

Query: 373 SAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430
           ++   ++ + +  A     K        ++      +  +    + L   D   A + 
Sbjct: 161 ASRLLVRQQKFDEAAASLQKEKSM-YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 11/106 (10%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
                   + E+A   Y + A+  + + S                +  +      L+   
Sbjct: 43  AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFH---------AAKAFEQAGMMLKDLQRMP 93

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430
            A++   K       N       A A       ++  LD+ KA+  
Sbjct: 94  EAVQYIEKASVMYVENGT-PDTAAMALDRAGK-LMEPLDLSKAVHL 137

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} PDB: 3pra_A Length = 157

 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 16/80 (20%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDR-------------YDPLTFKLGTGQVATGLDNGIIT 111
           G  V I Y G + DG  FD+T +              Y P+    G GQV  GLD  I+ 
Sbjct: 5   GKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILE 63

Query: 112 MKKRECAVFTFTLPSELRFG 131
           M   E       LP E  FG
Sbjct: 64  MDVGE--EREVVLPPEKAFG 81

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 52.5 bits (126), Expect = 8e-09
 Identities = 13/111 (11%), Positives = 31/111 (27%), Gaps = 15/111 (13%)

Query: 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD 382
           EEG  + K      A   +        ++    +             W +      + + 
Sbjct: 22  EEGLSMLKLANLAEAALAFEAV---CQKEPEREE------------AWRSLGLTQAENEK 66

Query: 383 YQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433
              AI   +     D  ++      A ++    +   A   ++  + + PQ
Sbjct: 67  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 12/65 (18%), Positives = 20/65 (30%)

Query: 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429
            +      LKL +   A      V   +    +A         E     LA + +  A  
Sbjct: 20  PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79

Query: 430 ADPQN 434
            DP++
Sbjct: 80  LDPKD 84

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 15/115 (13%)

Query: 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD 382
                 +++G YE A   +         D                  +L   AC   +  
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYD---------------SRFFLGLGACRQAMGQ 70

Query: 383 YQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH 437
           Y  AI   S     D    +  +  A+  ++  +L  AE  +  A E        
Sbjct: 71  YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 9/103 (8%), Positives = 22/103 (21%), Gaps = 15/103 (14%)

Query: 332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS 391
           G     G       +        +  +        +    + A    +   Y+ A  +  
Sbjct: 1   GPLGSGGGTIAMLNE--------ISSDT-------LEQLYSLAFNQYQSGXYEDAHXVFQ 45

Query: 392 KVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            +   D ++ +           +    LA          D   
Sbjct: 46  ALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 53.6 bits (129), Expect = 7e-08
 Identities = 11/111 (9%), Positives = 24/111 (21%), Gaps = 15/111 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G         +R      +A     E                V    +       L+  Q
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQ---------------VVAIASHDGGKQALETVQ 429

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435
             + +  +        V A+         +  ++        A+ A   + 
Sbjct: 430 RLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDH 480

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 11/110 (10%), Positives = 25/110 (22%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G         +R      +A     +                V    ++      L+  Q
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQ---------------VVAIASNGGGKQALETVQ 225

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + +  +        V A+         +  +      + +A    PQ 
Sbjct: 226 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 275

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 10/110 (9%), Positives = 25/110 (22%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
                     +R      +A                 +   +V    ++      L+  Q
Sbjct: 351 DGGKQALETVQRLLPVLCQAHG---------------LTPEQVVAIASNGGGKQALETVQ 395

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + +  +        V A+         +  +      + +A    PQ 
Sbjct: 396 RLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 445

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 11/110 (10%), Positives = 26/110 (23%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G         +R      +A     +                V    +++     L+  Q
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQ---------------VVAIASNSGGKQALETVQ 293

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + +  +        V A+         +  +      + +A    PQ 
Sbjct: 294 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 343

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 10/110 (9%), Positives = 23/110 (20%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
                     +       +A     E                V    ++      L+  Q
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQ---------------VVAIASNGGGKQALETVQ 191

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + +  +        V A+         +  +      + +A    PQ 
Sbjct: 192 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 241

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 11/110 (10%), Positives = 23/110 (20%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
                     +R      +A     E                V    +       L+  Q
Sbjct: 113 DGGKQALETVQRLLPVLCQAHGLTPEQ---------------VVAIASHDGGKQALETVQ 157

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + +  +        V A+         +  +      + +A    PQ 
Sbjct: 158 ALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 207

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 9/110 (8%), Positives = 24/110 (21%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
                     +R      +A     +                V    ++      L+  Q
Sbjct: 283 SGGKQALETVQRLLPVLCQAHGLTPQQ---------------VVAIASNGGGKQALETVQ 327

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + +  +        V A+         +  +      + +A    P+ 
Sbjct: 328 RLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 377

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 11/110 (10%), Positives = 26/110 (23%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G         +R      +A     +                V    ++      L+  Q
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQ---------------VVAIASNGGGKQALETVQ 259

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + +  +        V A+   +     +  +      + +A    PQ 
Sbjct: 260 RLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 10/110 (9%), Positives = 24/110 (21%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G         +R      +A     +                V    +       L+  Q
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQ---------------VVAIASHDGGKQALETVQ 361

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + +  +        V A+         +  +      + +A    P+ 
Sbjct: 362 RLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ 411

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 6/65 (9%), Positives = 17/65 (26%)

Query: 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429
             +       L+  Q  + +  +        V A+         +  +      + +A  
Sbjct: 75  IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHG 134

Query: 430 ADPQN 434
             P+ 
Sbjct: 135 LTPEQ 139

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 9/110 (8%), Positives = 23/110 (20%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
                     +R      +A     +                V    +       L+  Q
Sbjct: 79  DGGKQALETVQRLLPVLCQAHGLTPQQ---------------VVAIASHDGGKQALETVQ 123

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + +  +        V A+         +  +      + +A    P+ 
Sbjct: 124 RLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ 173

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.9 bits (128), Expect = 8e-08
 Identities = 11/110 (10%), Positives = 29/110 (26%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
            +  ++ G +E A +   +                   +       L  ++   + +   
Sbjct: 6   AHREYQAGDFEAAERHCMQLWR---------------QEPDNTGVLLLLSSIHFQCRRLD 50

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            +    +  +  +    +A       Y E   L  A    + A+   P  
Sbjct: 51  RSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
            ++ F+  + +R+      A   + ++    +             + N      +    Q
Sbjct: 40  SSIHFQCRRLDRSAHFSTLA---IKQNPLLAE------------AYSNLGNVYKERGQLQ 84

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            AIE     L      +      A A +   D+  A      A++ +P  
Sbjct: 85  EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           GN+  + G+ + A + Y  A   +     F+D             ++N AA  +   D +
Sbjct: 74  GNVYKERGQLQEAIEHYRHA---LRLKPDFID------------GYINLAAALVAAGDME 118

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
           GA++     L  +                +  L  A+    KAIE  P  
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 22/110 (20%), Positives = 32/110 (29%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           GNLL   G+ E A   Y KA   +    +F               W N         +  
Sbjct: 142 GNLLKALGRLEEAKACYLKA---IETQPNFAV------------AWSNLGCVFNAQGEIW 186

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            AI    K +  D + + A         E      A     +A+   P +
Sbjct: 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.0 bits (123), Expect = 4e-07
 Identities = 10/65 (15%), Positives = 23/65 (35%)

Query: 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429
            +  A    +  D++ A   C ++   +  N   L   +  + +   L  +      AI+
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 430 ADPQN 434
            +P  
Sbjct: 62  QNPLL 66

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.6 bits (122), Expect = 5e-07
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G +    G+   A   + KA   V+ D +F+D             ++N      + + + 
Sbjct: 176 GCVFNAQGEIWLAIHHFEKA---VTLDPNFLD------------AYINLGNVLKEARIFD 220

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            A+    + L    ++       A  Y E   + LA    ++AIE  P  
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.6 bits (122), Expect = 5e-07
 Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 15/112 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
            N L + G    A   YN A   +    +  D               N A    +  + +
Sbjct: 278 ANALKEKGSVAEAEDCYNTA---LRLCPTHAD------------SLNNLANIKREQGNIE 322

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
            A+ L  K L+       A    A    +   L  A +  K+AI   P   +
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.8 bits (120), Expect = 7e-07
 Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
             + ++ G  + A   Y +A   +     F D             + N A    +     
Sbjct: 244 ACVYYEQGLIDLAIDTYRRA---IELQPHFPD------------AYCNLANALKEKGSVA 288

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            A +  +  L     +  +L   A    E  ++  A    +KA+E  P+ 
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.8 bits (120), Expect = 8e-07
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           GN+L +   ++RA   Y +A   +S   +                  N A    +     
Sbjct: 210 GNVLKEARIFDRAVAAYLRA---LSLSPNHAV------------VHGNLACVYYEQGLID 254

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            AI+   + ++   H   A    A A  E   +  AE     A+   P +
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.8 bits (120), Expect = 8e-07
 Identities = 16/110 (14%), Positives = 27/110 (24%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
              L   G  E A + Y  A                           +       L   +
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQ---------------YNPDLYCVRSDLGNLLKALGRLE 152

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            A     K ++   +   A       +    ++ LA    +KA+  DP  
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 18/111 (16%)

Query: 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383
           EG L      ++ A   ++   D  S                      N       LK+ 
Sbjct: 12  EGVLAADKKDWKGALDAFSAVQDPHSR------------------ICFNIGCMYTILKNM 53

Query: 384 QGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             A +  ++ ++ D H   A ++R   Y +     LA  D+K+A+     N
Sbjct: 54  TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 31/128 (24%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G +         A K + ++   ++ D                  +        + + Y 
Sbjct: 44  GCMYTILKNMTEAEKAFTRS---INRDKHLAV------------AYFQRGMLYYQTEKYD 88

Query: 385 GAIELCSKVL----------------DCDCHNVKALYRRAQAYMEIADLILAELDIKKAI 428
            AI+   + L                       + LY  A  Y +  +   AE  +  A 
Sbjct: 89  LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148

Query: 429 EADPQNRN 436
               + R+
Sbjct: 149 SMKSEPRH 156

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 372 NSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431
           N        KD++GA++  S V D    + +  +     Y  + ++  AE    ++I  D
Sbjct: 11  NEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 67

Query: 432 PQN 434
              
Sbjct: 68  KHL 70

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSC--WLNSAACCLKLKD 382
           G L ++  KY+ A K   +A   +  +   +D +   ++    +C    N A    K ++
Sbjct: 78  GMLYYQTEKYDLAIKDLKEALIQLRGN-QLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136

Query: 383 YQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLI 418
           ++ A E  +           +   +A   +    L 
Sbjct: 137 WKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLY 172

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Length = 231

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 16/80 (20%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDR-------------YDPLTFKLGTGQVATGLDNGIIT 111
           G  V I Y G + DG  FD+T +              Y P+    G GQV  GLD  I+ 
Sbjct: 5   GKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILE 63

Query: 112 MKKRECAVFTFTLPSELRFG 131
           M   E       LP E  FG
Sbjct: 64  MDVGEE--REVVLPPEKAFG 81

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 19/129 (14%)

Query: 325 GNLLFKNGKYERAGKKYNKA--------------ADCVSEDGSFVDDEQKLVKSLR---- 366
            N+  + G  E A + Y KA              A  + + G   +      +++R    
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 367 -VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIK 425
               + N      +++D QGA++  ++ +  +     A    A  + +  ++  A    +
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135

Query: 426 KAIEADPQN 434
            A++  P  
Sbjct: 136 TALKLKPDF 144

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 19/132 (14%)

Query: 325 GNLLFKNGKYERAGKKYNKA--------------ADCVSEDGSFVDDEQKLVKSLRVS-- 368
            ++L + GK + A   Y +A               + + E        Q   ++++++  
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109

Query: 369 ---CWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIK 425
                 N A+      +   AI      L        A    A     + D    +  +K
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169

Query: 426 KAIEADPQNRNH 437
           K +         
Sbjct: 170 KLVSIVADQLEK 181

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 8/112 (7%), Positives = 18/112 (16%), Gaps = 15/112 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
            +     G          +                                     + + 
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGH---------------PEAVARLGRVRWTQQRHA 74

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
            A  L  +  D    +         A  +      A     +A +  P+   
Sbjct: 75  EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 15/104 (14%)

Query: 331 NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC 390
                R   +   A     +D                  WL  A   L + D        
Sbjct: 2   TADGPRELLQLRAAVRHRPQD---------------FVAWLMLADAELGMGDTTAGEMAV 46

Query: 391 SKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            + L     + +A+ R  +          A + +++A +A P++
Sbjct: 47  QRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 30/170 (17%), Positives = 54/170 (31%), Gaps = 32/170 (18%)

Query: 279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKK---------------E 323
           + D          + E+   ++I E    E  NQ  + A+ +                 E
Sbjct: 13  ESDTEFWDKMQAEWEEMARRNWISEN--QEAQNQVTVSASEKGYYFHTENPFKDWPGAFE 70

Query: 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383
           EG    K G           A   + +D    +             W        + ++ 
Sbjct: 71  EGLKRLKEGDLPVTILFMEAA---ILQDPGDAE------------AWQFLGITQAENENE 115

Query: 384 QGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433
           Q AI    + L+   +N+KAL   A +Y   +    A   +K  I+ +P+
Sbjct: 116 QAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 16/134 (11%), Positives = 30/134 (22%), Gaps = 19/134 (14%)

Query: 301 IKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQK 360
             +K+  E     +         E            + K Y    +              
Sbjct: 18  FWDKMQAEWEEMARRNWI----SENQEAQNQVTVSASEKGYYFHTE-------------- 59

Query: 361 LVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILA 420
                            LK  D    I      +  D  + +A         E  +   A
Sbjct: 60  -NPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAA 118

Query: 421 ELDIKKAIEADPQN 434
            + +++ +E  P N
Sbjct: 119 IVALQRCLELQPNN 132

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 8/108 (7%), Positives = 23/108 (21%), Gaps = 15/108 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G    +N   + A     +    +    + +               +  A         Q
Sbjct: 106 GITQAENENEQAAIVALQRC---LELQPNNLK------------ALMALAVSYTNTSHQQ 150

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP 432
            A E     +  +      +  +  +      +  + +D         
Sbjct: 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 15/112 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G L   +G++ RA   +N A     ED                S W    A        +
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVRPED---------------YSLWNRLGATLANGDRSE 264

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
            A+E  ++ L+     +++ Y    + + +     A  +   A+    ++RN
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN 316

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 7/103 (6%)

Query: 332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS 391
            ++ERA        +       F D  Q   + +    W++             + +   
Sbjct: 3   MEFERAKAAVESDTE-------FWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYY 55

Query: 392 KVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
              +    +    +      ++  DL +  L ++ AI  DP +
Sbjct: 56  FHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD 98

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 48.7 bits (115), Expect = 3e-07
 Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 14/139 (10%)

Query: 309 MNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVS 368
           M    ++  A     +       G+Y+ A     +A   +    +   +E          
Sbjct: 2   MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRA---MEISHTMPPEEAFDHAGFDAF 58

Query: 369 CWLNSAACCLKLKDYQGAIELCSKVLDCDCHN-----------VKALYRRAQAYMEIADL 417
           C    A     L+ +  A+    K L                 + A+Y RA A   +   
Sbjct: 59  CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG 118

Query: 418 ILAELDIKKAIEADPQNRN 436
             A  + KK +E   + + 
Sbjct: 119 AEAMPEFKKVVEMIEERKG 137

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Length = 158

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
              VTI Y   + +G   D        L++  G   +  GL+  +   ++ E   F   +
Sbjct: 6   DKVVTIRYTLQV-EGEVLDQG-----ELSYLHGHRNLIPGLEEALEGREEGE--AFQAHV 57

Query: 125 PSELRFG 131
           P+E  +G
Sbjct: 58  PAEKAYG 64

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 17/111 (15%), Positives = 25/111 (22%), Gaps = 14/111 (12%)

Query: 325 GNLLFKN-GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY 383
           G  L     +   +   ++KA                          LN   C  K   +
Sbjct: 83  GWFLCGRLNRPAESMAYFDKAL-------------ADPTYPTPYIANLNKGICSAKQGQF 129

Query: 384 QGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             A     + L        A    A+  M    L  A+   KK        
Sbjct: 130 GLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 14/65 (21%), Positives = 25/65 (38%)

Query: 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429
               A   ++ +DY+ A       L  D  N  A   RA+ Y  +     A+   ++A+ 
Sbjct: 11  KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70

Query: 430 ADPQN 434
             P +
Sbjct: 71  IKPDS 75

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 13/111 (11%), Positives = 29/111 (26%), Gaps = 15/111 (13%)

Query: 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD 382
           EEG  + K      A   +              +             W +      + + 
Sbjct: 26  EEGLSMLKLANLAEAALAFEAV---CQAAPEREE------------AWRSLGLTQAENEK 70

Query: 383 YQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433
              AI   +     D  ++      A ++    +   A   ++  + + PQ
Sbjct: 71  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 15/112 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G L   +  Y+ A     +A +   +D                  W    A        Q
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVELRPDD---------------AQLWNKLGATLANGNRPQ 223

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
            A++  ++ LD +   V+ +Y  A +Y  ++   LA   + +AI        
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTT 275

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 9/110 (8%), Positives = 27/110 (24%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
                       A            +         +    +      +         +Y+
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
               L    L+ + ++ +        Y    +   A  ++++A+E  P +
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 12/65 (18%), Positives = 19/65 (29%)

Query: 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429
            +      LKL +   A      V        +A         E     LA + +  A  
Sbjct: 24  PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM 83

Query: 430 ADPQN 434
            DP++
Sbjct: 84  LDPKD 88

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G +L K  + + A     +A +    D                        C        
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELNEND---------------TEARFQFGMCLANEGMLD 176

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            A+   + V + D  +  A Y     Y    +   A   + KAI+  P +
Sbjct: 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
            NLL    + ERA   Y+KA   +  D S                +  +    +  + Y+
Sbjct: 64  ANLLSSVNELERALAFYDKA---LELDSSAAT------------AYYGAGNVYVVKEMYK 108

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            A ++  K L     N    Y      +++    LA   +++A+E +  +
Sbjct: 109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           GN+      Y+ A   + KA     E+                  +       +KL+  +
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALRAGMEN---------------GDLFYMLGTVLVKLEQPK 142

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            A+    + ++ + ++ +A ++          L  A        E DP +
Sbjct: 143 LALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.7 bits (112), Expect = 5e-06
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
                + G YE+A + + KA   + E+                  ++N A     + + +
Sbjct: 30  MGRGSEFGDYEKAAEAFTKA---IEENKEDAI------------PYINFANLLSSVNELE 74

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            A+    K L+ D     A Y     Y+       A+   +KA+ A  +N
Sbjct: 75  RALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN 124

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 45.9 bits (110), Expect = 1e-06
 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 17/115 (14%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G L +  G Y  +   + KA   +  D                  WL        L+ Y+
Sbjct: 13  GVLQYDAGNYTESIDLFEKA---IQLDPEESK------------YWLMKGKALYNLERYE 57

Query: 385 GAIELCSKVLD--CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH 437
            A++  + V++   D +N      +A A   I    +     +   + +  + +H
Sbjct: 58  EAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHHH 112

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.9 bits (116), Expect = 3e-06
 Identities = 10/110 (9%), Positives = 26/110 (23%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G         +R      +A                 +  ++V    ++      L+  Q
Sbjct: 572 GGGKQALETVQRLLPVLCQAHG---------------LTQVQVVAIASNIGGKQALETVQ 616

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + +  +        V A+         +  +      + +A    P  
Sbjct: 617 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 8/110 (7%), Positives = 21/110 (19%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
                     +R      +A                      V    +       L+  Q
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLTPAQ---------------VVAIASHDGGKQALETVQ 650

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + +  +        V A+         +  +      + +A     + 
Sbjct: 651 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQ 700

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 9/110 (8%), Positives = 23/110 (20%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
                     +R      +A     +                V    ++      L+  Q
Sbjct: 233 DGGKQALETMQRLLPVLCQAHGLPPDQ---------------VVAIASNIGGKQALETVQ 277

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + +  +        V A+         +  +      + +A    P  
Sbjct: 278 RLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ 327

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 9/110 (8%), Positives = 22/110 (20%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
                     +R      +A     +                V    +       L+  Q
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGLTPDQ---------------VVAIASHGGGKQALETVQ 311

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + +  +        V A+         +  +      + +A    P  
Sbjct: 312 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 361

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 11/110 (10%), Positives = 24/110 (21%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G         +R      +A     E                V    ++      L+  Q
Sbjct: 674 GGGKQALETVQRLLPVLCQAHGLTQEQ---------------VVAIASNNGGKQALETVQ 718

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + +  +        V A+         +  +      + +A    P  
Sbjct: 719 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQ 768

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.0 bits (106), Expect = 5e-05
 Identities = 9/110 (8%), Positives = 21/110 (19%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
                     +R      +A                      V    +       L+  Q
Sbjct: 199 NGGKQALETVQRLLPVLCQAHGLTPAQ---------------VVAIASHDGGKQALETMQ 243

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + +  +        V A+         +  +      + +A    P  
Sbjct: 244 RLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ 293

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 8/112 (7%), Positives = 23/112 (20%), Gaps = 15/112 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
                     ++      +A                 +   +V    ++      L   Q
Sbjct: 470 DGGKQALETVQQLLPVLCQAHG---------------LTPDQVVAIASNIGGKQALATVQ 514

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
             + +  +        V A+         +  +      + +A    P    
Sbjct: 515 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 9/110 (8%), Positives = 23/110 (20%), Gaps = 16/110 (14%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G         +R      +A     +                V    ++      L+  Q
Sbjct: 369 GGGKQALETVQRLLPVLCQAHGLTPDQ---------------VVAIASNGGK-QALETVQ 412

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + +  +        V A+         +  +      + +     P  
Sbjct: 413 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQ 462

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 10/110 (9%), Positives = 24/110 (21%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G         +R      +A     +                V    ++      L+  Q
Sbjct: 538 GGGKQALETVQRLLPVLCQAHGLTPDQ---------------VVAIASNGGGKQALETVQ 582

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + +  +        V A+         +  +      + +A    P  
Sbjct: 583 RLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 8/110 (7%), Positives = 22/110 (20%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
                     +R      +A     +                V    ++      L+  Q
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGLTPDQ---------------VVAIASNGGGKQALETVQ 548

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + +  +        V A+         +  +      + +A       
Sbjct: 549 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQ 598

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.2 bits (96), Expect = 7e-04
 Identities = 10/110 (9%), Positives = 23/110 (20%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G         +R      +A     +                V    +       L+  Q
Sbjct: 301 GGGKQALETVQRLLPVLCQAHGLTPDQ---------------VVAIASHDGGKQALETVQ 345

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
             + +  +        V A+         +  +      + +A    P  
Sbjct: 346 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 15/112 (13%)

Query: 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD 382
           EEG    + G    A   +  A   V +D   ++             W        + + 
Sbjct: 69  EEGLRRLQEGDLPNAVLLFEAA---VQQDPKHME------------AWQYLGTTQAENEQ 113

Query: 383 YQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
              AI    + L+    N  AL   A ++   +    A   ++  +   P  
Sbjct: 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 165

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 12/125 (9%)

Query: 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSC 369
             Q ++E   +   +         Y+              E+    D  Q          
Sbjct: 19  KLQAELEEMAK--RDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQ---------- 66

Query: 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429
                   L+  D   A+ L    +  D  +++A         E    +LA   +++ +E
Sbjct: 67  PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE 126

Query: 430 ADPQN 434
             P N
Sbjct: 127 LKPDN 131

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 15/112 (13%), Positives = 35/112 (31%), Gaps = 15/112 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G L   +G+Y++A   +  A                 V+      W    A        +
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALS---------------VRPNDYLLWNKLGATLANGNQSE 268

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
            A+    + L+     +++ Y    + + +     A     +A+    ++R 
Sbjct: 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G L    G    A   +++A   ++      +             +        +  ++ 
Sbjct: 50  GVLYDSLGLRALARNDFSQA---LAIRPDMPE------------VFNYLGIYLTQAGNFD 94

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            A E    VL+ D     A   R  A        LA+ D+    + DP +
Sbjct: 95  AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 12/110 (10%), Positives = 21/110 (19%), Gaps = 11/110 (10%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
              L    + E    +  +               + L    R             L    
Sbjct: 12  AVPLQPTLQQEVILARMEQILA-----------SRALTDDERAQLLYERGVLYDSLGLRA 60

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            A    S+ L       +          +  +   A       +E DP  
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 110

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 46.5 bits (110), Expect = 8e-06
 Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 12/123 (9%)

Query: 310 NNQGKIEAAGRKKEE-GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVS 368
           ++  K E A     +   +     +   AG  + KAAD   + G+  +           +
Sbjct: 28  SDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEA---------GN 78

Query: 369 CWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAEL-DIKKA 427
            ++ +  C     +   A++     +    H  +   R A    E+ +++  +L D  KA
Sbjct: 79  TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-FRRGANFKFELGEILENDLHDYAKA 137

Query: 428 IEA 430
           I+ 
Sbjct: 138 IDC 140

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 17/126 (13%)

Query: 316 EAAGRKKEEGNLLFKN-GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSA 374
             A  K E G +L  +   Y +A   Y  A +  ++D S          +L   C++  A
Sbjct: 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---------VALSNKCFIKCA 165

Query: 375 ACCLKLKDYQGAIELCSKVLD------CDCHNVKALYRRA-QAYMEIADLILAELDIKKA 427
                   Y  A ++ SK++           ++K  + +     +   D + A   +++ 
Sbjct: 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225

Query: 428 IEADPQ 433
              DP 
Sbjct: 226 QSEDPN 231

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 20/130 (15%)

Query: 325 GNLLFKNGKYERAGKKYNKA--------------ADCVSEDGSFVDDEQKLVKSL----- 365
             +L ++ + ERA K    A                 +      + +E   + ++     
Sbjct: 104 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 163

Query: 366 -RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDI 424
                W +       L+D    +E  + +L+ D  N  A   R     E          +
Sbjct: 164 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV 223

Query: 425 KKAIEADPQN 434
            + ++ D +N
Sbjct: 224 DQLLKEDVRN 233

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 43.5 bits (102), Expect = 9e-05
 Identities = 11/116 (9%), Positives = 31/116 (26%), Gaps = 21/116 (18%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
             L+       +  +      +  +++                  W +      + K + 
Sbjct: 173 RVLVEWLRDPSQELEFIADILNQDAKN---------------YHAWQHRQWVIQEFKLWD 217

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEI-----ADLILAELD-IKKAIEADPQN 434
             ++   ++L  D  N     +R              ++  E+    + I+  P N
Sbjct: 218 NELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN 273

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 24/110 (21%), Positives = 35/110 (31%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G    K G+Y +A     +       D   VD              L+     +K     
Sbjct: 15  GISHAKAGRYSQAVMLLEQV---YDADAFDVD------------VALHLGIAYVKTGAVD 59

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
              EL  + L     NVK        Y+++    LA   + K  EA+P N
Sbjct: 60  RGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 19/110 (17%), Positives = 30/110 (27%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G    +  KY+ A     K A+    +                +           L  + 
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAEANPIN---------------FNVRFRLGVALDNLGRFD 127

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            AI+     L    +  K     A +Y ++     A    KKA E D   
Sbjct: 128 EAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.5 bits (96), Expect = 3e-04
 Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G    K G  +R  +   ++   +++    V                      ++++ Y 
Sbjct: 49  GIAYVKTGAVDRGTELLERS---LADAPDNVK------------VATVLGLTYVQVQKYD 93

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            A+ L  KV + +  N    +R   A   +     A    K A+   P  
Sbjct: 94  LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 5/172 (2%)

Query: 267 INHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGN 326
            +H +  G V     +A++    ++     M D  +E        QG ++     ++   
Sbjct: 6   HHHHHSSGLVPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDS-- 63

Query: 327 LLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY-QG 385
             F+    E AG+K     + + +    +++       +     +          DY   
Sbjct: 64  -YFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPE 121

Query: 386 AIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH 437
           A  L SK +  +   V+A  +  + Y +  D+  A      A+       + 
Sbjct: 122 AEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSL 173

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 44.4 bits (104), Expect = 4e-05
 Identities = 12/105 (11%), Positives = 33/105 (31%), Gaps = 9/105 (8%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
            N+  +NG  ++    + +    +              +   V    N A        Y+
Sbjct: 162 ANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYE 213

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429
            ++   +K ++     + ++    Q Y +  + +      +  IE
Sbjct: 214 ESLYQVNKAIE-ISCRINSMALIGQLYYQRGECLRKLEYEEAEIE 257

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNV-KALYRRAQAYMEIADLILAELDIKKAI 428
            L +    +   D + A++   + L  +     +A Y    AY ++ D   A  + + AI
Sbjct: 3   QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62

Query: 429 EADPQN 434
           E +P +
Sbjct: 63  ELNPDS 68

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.8 bits (97), Expect = 1e-04
 Identities = 32/108 (29%), Positives = 43/108 (39%), Gaps = 15/108 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           GN  +K G Y+ A + Y KA   +  D    +             W N      K  DY 
Sbjct: 8   GNAYYKQGDYDEAIEYYQKA---LELDPRSAE------------AWYNLGNAYYKQGDYD 52

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP 432
            AIE   K L+ D  + +A Y    AY +  D   A    +KA+E DP
Sbjct: 53  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           GN  +K G Y+ A + Y KA   +  D    +             W N      K  DY 
Sbjct: 42  GNAYYKQGDYDEAIEYYQKA---LELDPRSAE------------AWYNLGNAYYKQGDYD 86

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            AIE   K L+ D  + +A Y    AY +  D   A    +KA+E DP++
Sbjct: 87  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 62/488 (12%), Positives = 136/488 (27%), Gaps = 135/488 (27%)

Query: 3   CESVMTLEKGANLSDIDGEEEEPGEVIESAAPLKVGEERGL---------GNSGIKK--- 50
           C+ V  + K   LS      EE   +I S           L             ++K   
Sbjct: 35  CKDVQDMPKSI-LSK-----EEIDHIIMSKDA----VSGTLRLFWTLLSKQEEMVQKFVE 84

Query: 51  KLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGII 110
           ++L+    +       E         +    +   RDR           QV    +   +
Sbjct: 85  EVLRINYKFLMSPIKTE----QRQPSMMTRMYIEQRDRL------YNDNQVFAKYN---V 131

Query: 111 TMKK-----RECAVFTFTLPSELR-------FGVE--GRDSLPPNSVVQFEVEL-----V 151
           +  +     R+          ELR        GV   G+  +  +  + ++V+      +
Sbjct: 132 SRLQPYLKLRQAL-------LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 152 SWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYL 211
            W+ + + +    +++ +            L   +        D +   K     ++  L
Sbjct: 185 FWLNLKNCNSPETVLEMLQ----------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 212 KDV----SYIARL------EDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEE 261
           + +     Y   L      ++   +    ++    +   T  +QV    D ++A      
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNA--FNLSCKILLTTRFKQVT---DFLSAATTTH- 288

Query: 262 WAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEM--NNQGKIEAAG 319
             I   +H       E K  L     C              + +P E+   N  ++    
Sbjct: 289 --ISLDHHSMTLTPDEVKSLLLKYLDCR------------PQDLPREVLTTNPRRLSIIA 334

Query: 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRV------------ 367
               +G   + N K+    K        ++       + +K+   L V            
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILL 392

Query: 368 -SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAY-MEIADLILAELDIK 425
              W +              I+    V+    H    + ++ +   + I  +    L++K
Sbjct: 393 SLIWFDV-------------IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY---LELK 436

Query: 426 KAIEADPQ 433
             +E +  
Sbjct: 437 VKLENEYA 444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 8/135 (5%)

Query: 303 EKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLV 362
           E +  E  +Q +I +         + +  G+        +K      +  S    E    
Sbjct: 79  ELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE---- 134

Query: 363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAEL 422
            S  + C              + A     K L+    N +     A A   + +   ++ 
Sbjct: 135 -SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQN 193

Query: 423 DI---KKAIEADPQN 434
            I   ++AI  +P N
Sbjct: 194 AIDPLRQAIRLNPDN 208

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 25/154 (16%), Positives = 49/154 (31%), Gaps = 16/154 (10%)

Query: 291 LYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350
           L      +D  ++KV +    Q +   A        L    G+ E A +   KA + + +
Sbjct: 24  LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQ 83

Query: 351 DGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC--------DCHNVK 402
           + +   + + LV       W N A     +           KV              + +
Sbjct: 84  EHADQAEIRSLV------TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE 137

Query: 403 ALYRRAQAYMEIA--DLILAELDIKKAIEADPQN 434
                    ++        A++  +KA+E  P+N
Sbjct: 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN 171

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 15/110 (13%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           GN  +K G Y+ A + Y KA   +  D +  +             W N      K  DY 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKA---LELDPNNAE------------AWYNLGNAYYKQGDYD 60

Query: 385 GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            AIE   K L+ D +N +A Y    AY +  D   A    +KA+E DP N
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 15/113 (13%), Positives = 27/113 (23%), Gaps = 18/113 (15%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ 384
           G        Y  +   Y +A     E+                  +   A          
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAEL---------------YAALATVLYYQASQH 95

Query: 385 G---AIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
                  +  K L  D + + AL   A      A+   A    +K ++ +   
Sbjct: 96  MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 17/112 (15%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL--KD 382
             +L K  + + A K+  K  D         D++  L         L +A   L    + 
Sbjct: 137 VQILLKLDRLDLARKELKKMQD--------QDEDATLT-------QLATAWVSLAAGGEK 181

Query: 383 YQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
            Q A  +  ++ D     +  L  +A  +M       AE  +++A++ D  +
Sbjct: 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	437
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	100.0
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.97
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.95
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.93
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.92
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.92
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.91
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.91
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.91
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.91
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	99.91
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.91
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.91
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.91
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.9
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.9
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.9
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.9
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.9
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.9
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.89
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.89
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.89
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.89
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.89
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.88
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.87
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.84
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.84
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.83
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.83
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.82
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.81
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.81
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.8
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.8
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.8
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.79
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.79
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.78
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.78
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.78
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.78
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.77
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.77
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.77
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.77
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.77
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.76
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.75
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.75
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.75
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.75
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.74
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.74
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.73
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	99.72
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.72
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.72
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.7
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.7
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.7
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.69
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.69
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.68
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.67
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.66
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.66
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.64
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.63
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.61
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.61
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.59
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.59
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.53
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.52
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.5
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.5
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.5
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.48
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.47
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.47
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.47
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.47
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.47
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.46
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.43
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.43
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.43
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.43
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.42
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.42
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.41
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.37
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.37
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.37
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.37
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.37
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.35
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.35
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.34
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.34
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.34
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.31
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.31
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.31
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.31
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.28
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.28
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.27
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.27
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.25
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.23
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.23
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.23
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.23
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.23
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.22
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.21
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.2
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.2
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.2
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.2
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.2
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.19
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.19
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.19
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.18
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.18
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.18
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.18
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.18
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.17
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.17
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.16
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.15
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.15
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.14
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.14
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.13
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.13
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.13
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.13
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.12
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.12
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.11
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.11
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.1
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.1
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.1
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.1
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.09
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.07
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.06
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	99.06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.04
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.04
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.03
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.02
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.02
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.02
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.01
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.0
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.0
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.99
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.99
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.99
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.97
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.95
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.94
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.94
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.93
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.93
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.92
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.92
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.91
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.91
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.91
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.91
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.91
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.89
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.88
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.87
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.87
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.86
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.85
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.84
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.83
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.81
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.81
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.81
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.79
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.79
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.78
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.78
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.78
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.78
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.77
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.77
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.77
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.77
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.75
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.75
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.75
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.75
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.75
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.74
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.73
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.72
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.71
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.71
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.71
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.7
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.68
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.68
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.67
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.63
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.61
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.61
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.61
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.6
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.58
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	98.58
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.57
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.57
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.55
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.54
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.52
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.51
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.48
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.47
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.47
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.45
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.43
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.38
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.36
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.35
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.24
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.22
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	98.18
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.17
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.17
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.16
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.14
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.14
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.09
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.06
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.06
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.03
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.0
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.96
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.93
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	97.92
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.92
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.88
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.84
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.83
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.76
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.74
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.7
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.61
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.6
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.54
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.54
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.5
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.35
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.29
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.25
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.24
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.9
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.69
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.49
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.07
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.79
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.77
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.66
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.4
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.95
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	94.74
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	94.74
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.67
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	94.56
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.37
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.71
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.68
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.05
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.88
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	92.68
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.69
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	91.37
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	90.58
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	89.78
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	89.23
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	88.24
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	86.18
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	85.29
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	84.59
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	84.59
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	84.3
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	84.0
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	83.87
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	83.08
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	82.04
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	81.81
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	81.72
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	80.7
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	80.22

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=3.5e-57  Score=458.08  Aligned_cols=355  Identities=35%  Similarity=0.599  Sum_probs=305.2

Q ss_pred             ecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEE
Q 013755           43 LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTF  122 (437)
Q Consensus        43 ~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~  122 (437)
                      .+++||+|+++++|+|..+|+.||.|+|||++++.||++|++|+.++.|+.|.+|.+++|+||+++|.+|++|++++|  
T Consensus        28 ~~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~--  105 (457)
T 1kt0_A           28 KKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHL--  105 (457)
T ss_dssp             -----CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEE--
T ss_pred             CCCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEE--
Confidence            488999999999999954599999999999999989999999998888999999999999999999999999999999  


Q ss_pred             ecCCCCCCCCCCCC-CCCCCCcEEEEEEEeceeeeeccCCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeec
Q 013755          123 TLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (437)
Q Consensus       123 ~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~~~~d~~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~  201 (437)
                      +|||+++||..+.+ .||++++++|+|+|.++.. .++..|+++++++++.|.|+..|..++.|+++|            
T Consensus       106 ~i~~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~-~~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y------------  172 (457)
T 1kt0_A          106 LCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHL------------  172 (457)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-EETTSSSSEEEEEEECCBCSCCCCTTCEEEEEE------------
T ss_pred             EEChHHhccccCCCCCCCCCCcEEEEEeeceeec-ccccCCcceEEEEEecCCCCCCCCCCCEEEEEE------------
Confidence            99999999999876 8999999999999999875 467789999999999999999999999888755            


Q ss_pred             cCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEEcCCC---CcchHHHHHhcccccCcEEEEEEcCCCCCCcccc
Q 013755          202 TPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEE---QVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (437)
Q Consensus       202 ~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~---~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~  278 (437)
                                     +|++ +|++|+++      ++.|.+|++   .++++|+.|+..|++||++.|.++|.++|+..+.
T Consensus       173 ---------------~g~~-~g~~f~~~------~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~  230 (457)
T 1kt0_A          173 ---------------EGRC-GGRMFDCR------DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGK  230 (457)
T ss_dssp             ---------------EEEE-TTEEEEEE------EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCB
T ss_pred             ---------------EEEe-CCeEEecC------ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCC
Confidence                           4445 56777765      589999976   4899999999999999999999999999999887


Q ss_pred             ccccccCCCCceEEEEEEEeeeecccCCCCCChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHH
Q 013755          279 KRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDE  358 (437)
Q Consensus       279 ~~~~~~ip~~~~l~~~vel~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~  358 (437)
                      ..  ..||+++.+.|.+++..+.+....|++..+.....+..++.+|+.+++.|+|++|+..|++|+.+.|....+.+++
T Consensus       231 ~~--~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~  308 (457)
T 1kt0_A          231 PK--FGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKE  308 (457)
T ss_dssp             GG--GTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH
T ss_pred             cc--cCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHH
Confidence            53  2599999999999999999999999999999999999999999999999999999999999999999887777788


Q ss_pred             HHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          359 QKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       359 ~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ......+...+|+|+|.||+++++|++|+.+|++||+++|+++++|+++|.+|..+|+|++|+.+|++|++++|+|.+
T Consensus       309 ~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~  386 (457)
T 1kt0_A          309 SKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA  386 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            888889999999999999999999999999999999999999999999999999999999999999999999999875

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=1e-45  Score=360.18  Aligned_cols=263  Identities=54%  Similarity=0.904  Sum_probs=126.7

Q ss_pred             CCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCc
Q 013755           37 VGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRE  116 (437)
Q Consensus        37 ~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~  116 (437)
                      .+++..++++||+|+++++|+|+..|+.||.|+|||++++.||++|++|+.++.|+.|.+|.+++|+||+++|.+|++|+
T Consensus         2 ~~~~~~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~~~lG~g~~i~g~e~~l~gm~~Ge   81 (356)
T 3jxv_A            2 VGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGE   81 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccceECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECCCCEEEEcccCCCcEEEEeCCCccchHHHHHHhcCCCCC
Confidence            45666789999999999999997889999999999999999999999999888999999999999999999999999999


Q ss_pred             eEEEEEecCCCCCCCCCCCC-CCCCCCcEEEEEEEeceeeeeccCCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCC
Q 013755          117 CAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGD  195 (437)
Q Consensus       117 ~~~~~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~~~~d~~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~  195 (437)
                      +++|  +|||++|||..+.+ .||++++++|+|+|+++....++..|+.+.++++++|.|+.+|..++.|+++|++++.+
T Consensus        82 ~~~~--~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~~~~~~di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~d  159 (356)
T 3jxv_A           82 NALF--TIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLED  159 (356)
T ss_dssp             --------------------------------------CCEEETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETT
T ss_pred             EEEE--EEChHHhCCCCCCCCCcCCCCEEEEEeeEEeeecccccccCceeEEEEEecCcccCCCCCCCEEEEEEEEEECC
Confidence            9999  99999999999988 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeeccC------------------------------------------------------CCCeeEEEE---------
Q 013755          196 GTMVAKTP------------------------------------------------------EEGVEFYLK---------  212 (437)
Q Consensus       196 g~~v~~~~------------------------------------------------------~~~~~~~~~---------  212 (437)
                      |+++.++.                                                      ...+.|.+.         
T Consensus       160 gt~~~~~~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~d  239 (356)
T 3jxv_A          160 GTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTE  239 (356)
T ss_dssp             SCEEEEEEEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEE
T ss_pred             CCEEeccCCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccc
Confidence            98765420                                                      001111111         


Q ss_pred             ---------------------------EEEEEEEecCccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEE
Q 013755          213 ---------------------------DVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIV  265 (437)
Q Consensus       213 ---------------------------~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i  265 (437)
                                                 .+||++++.||++|+++.+..+.|+.|.+|.+++|+||+.+|.+|++||++.|
T Consensus       240 v~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~~fd~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v  319 (356)
T 3jxv_A          240 IGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALV  319 (356)
T ss_dssp             ESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSCEEEEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEE
T ss_pred             cccccceeEEeeecccccCCCCCCCEEEEEEEEEECCCCEEeeccccCCcCEEEEECCCccchHHHHHHhCCCCCCEEEE
Confidence                                       19999999999999987456689999999999999999999999999999999


Q ss_pred             EEcCCCCCCccccccccccCCCCceEEEEEEEeeeec
Q 013755          266 TINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (437)
Q Consensus       266 ~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~  302 (437)
                      .|||+++||+.+... ...||++++++|+|+|+++.+
T Consensus       320 ~ip~~~aYG~~~~~~-~~~Ip~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          320 TIPPEYAYGSTESKQ-DAIVPPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             EECGGGTTTTSCEES-SSEECTTCCEEEEEEEEEEEC
T ss_pred             EEChHHccCCCCcCC-CCcCCcCCeEEEEEEEEEEEc
Confidence            999999999887532 136999999999999999875

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=3.4e-41  Score=315.71  Aligned_cols=227  Identities=37%  Similarity=0.628  Sum_probs=202.8

Q ss_pred             ecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEE
Q 013755           43 LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTF  122 (437)
Q Consensus        43 ~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~  122 (437)
                      .+++||+|+++++|+|..+|+.||.|+|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++|  
T Consensus        48 ~~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v--  125 (280)
T 1q1c_A           48 KQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHI--  125 (280)
T ss_dssp             SCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEE--
T ss_pred             CCCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEE--
Confidence            378999999999999955599999999999999999999999998778999999999999999999999999999999  


Q ss_pred             ecCCCCCCCCCCCC-CCCCCCcEEEEEEEeceeeeeccC--CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeee
Q 013755          123 TLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMV  199 (437)
Q Consensus       123 ~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~~~~d~~--~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v  199 (437)
                      +|||+++||..+.+ .||++++++|+|+|.++.. .++.  .|+++.++++++|.|+..|..++.|+++|..+       
T Consensus       126 ~ipp~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~-~~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~-------  197 (280)
T 1q1c_A          126 TCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGY-------  197 (280)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-EECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEE-------
T ss_pred             EECcHHhCCCcCccCCCCCCCcEEEEEEeeeecc-cccccccccceeEEeeecccccccccCCceEEEEEEEE-------
Confidence            99999999998876 8999999999999999875 3555  88999999999999988899999998876554       


Q ss_pred             eccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEEcCCCC---cchHHHHHhcccccCcEEEEEEcCCCCCCcc
Q 013755          200 AKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQ---VIAGLDRVAATMKKEEWAIVTINHEYGFGNV  276 (437)
Q Consensus       200 ~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~---~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~  276 (437)
                                          + ||++|+++      |+.|.+|.+.   +++||+.+|.+|++||++.|.|||+++||..
T Consensus       198 --------------------~-dG~~fd~~------~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~  250 (280)
T 1q1c_A          198 --------------------Y-KDKLFDQR------ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSV  250 (280)
T ss_dssp             --------------------E-TTEEEEEE------EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTT
T ss_pred             --------------------e-CCEEEecC------CeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcC
Confidence                                3 56667764      8999999987   5999999999999999999999999999988


Q ss_pred             ccccccccCCCCceEEEEEEEeeeecccCCCC
Q 013755          277 EAKRDLATIPSCAKLYYEVEMMDFIKEKVPWE  308 (437)
Q Consensus       277 ~~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~  308 (437)
                      +.+.  ..||+++++.|+|+|+++.+.++.|+
T Consensus       251 ~~~~--~~IP~~~~l~f~V~L~~i~~~~~~W~  280 (280)
T 1q1c_A          251 GKEK--FQIPPNAELKYELHLKSFEKAKESWE  280 (280)
T ss_dssp             CBGG--GTBCTTCCEEEEEEEEEEECCCC---
T ss_pred             CCcc--CccCCCCeEEEEEEEEEEeCCCCCCC
Confidence            7653  14999999999999999999998885

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=100.00  E-value=2.2e-35  Score=286.76  Aligned_cols=246  Identities=32%  Similarity=0.515  Sum_probs=207.3

Q ss_pred             CccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEEc
Q 013755          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFIT  241 (437)
Q Consensus       162 dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~l  241 (437)
                      +.++.++|+++|.|. .|..++.|+|+|.+++.+                          +|++||++ |.++.|+.|.+
T Consensus        48 ~~~~~~~~~~~g~g~-~~~~gd~v~v~y~g~~~~--------------------------~g~~fd~~-~~~~~~~~~~l   99 (338)
T 2if4_A           48 DEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKN--------------------------SQHKFEDT-WHEQQPIELVL   99 (338)
T ss_dssp             ETTEEEEEEECCBSC-CCCTTCEEEEEEEEEETT--------------------------TCCCCEEH-HHHTCCEEEET
T ss_pred             CCCeEEEEEeCCCCC-CCCCCCEEEEEEEEEEcC--------------------------CCcEeecc-cCCCCCeEEEc
Confidence            457899999999996 788889988866554321                          36778887 67788999999


Q ss_pred             CCC-CcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeeccc---CCCCCChHHHHHH
Q 013755          242 DEE-QVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEK---VPWEMNNQGKIEA  317 (437)
Q Consensus       242 g~~-~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~~---~~~~~~~~~~~~~  317 (437)
                      |.+ .+|+||+.+|.+|++||++.|+||+.++||..+... ...||+++++.|.|+|+.+....   ..|.++.++++..
T Consensus       100 g~~~~~i~g~e~~l~~m~~Ge~~~~~i~~~~~yg~~~~~~-~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~~  178 (338)
T 2if4_A          100 GKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGA  178 (338)
T ss_dssp             TSCCGGGHHHHHHHHHCCBTCEEEEEECGGGSSCSSCCCS-SSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHHH
T ss_pred             CCCCcccHHHHHHHhcCCCCCeEEEEECHHHhcCCCCCCC-CCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHHH
Confidence            998 899999999999999999999999999999988631 13699999999999999988644   4788999999999


Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC--CChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS--FVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      +..++..|+.+++.|+|++|+..|++|+.+.|.+..  ......+....+...+|+|+|.||+++++|++|+.+|+++|+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999876431  111222344555667999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ++|++.++|+++|.+|..+|+|++|+.+|+++++++|+|++
T Consensus       259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~  299 (338)
T 2if4_A          259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA  299 (338)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence            99999999999999999999999999999999999999875

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=100.00  E-value=1.2e-33  Score=274.29  Aligned_cols=244  Identities=35%  Similarity=0.586  Sum_probs=222.6

Q ss_pred             eeccCCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCC
Q 013755          156 VVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQ  235 (437)
Q Consensus       156 ~~d~~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~  235 (437)
                      ..+++.|+++.++|+++|.|...|..++.|+|+|                           ++++ +|++||++      
T Consensus        18 ~~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y---------------------------~g~~-~g~~fd~~------   63 (336)
T 1p5q_A           18 GSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVAL---------------------------EGYY-KDKLFDQR------   63 (336)
T ss_dssp             ----CCTTSEEEEEEECCCCSCCCCTTCEEEEEE---------------------------EEEE-TTEEEEEE------
T ss_pred             ceeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEE---------------------------EEEE-CCEEEecC------
Confidence            4567789999999999999988899998888755                           4455 67788876      


Q ss_pred             CeEEEcCCCC---cchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeecccCCCCCChH
Q 013755          236 PLEFITDEEQ---VIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQ  312 (437)
Q Consensus       236 p~~f~lg~~~---~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~~~~~  312 (437)
                      |+.|.+|.+.   ++++|+.|+..|++||++.|.++|+++||..|...  ..||+++.+.|+++|.++.+....|.+..+
T Consensus        64 ~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~l~i~p~~ayg~~g~~~--~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~  141 (336)
T 1p5q_A           64 ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAKESWEMNSE  141 (336)
T ss_dssp             EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECTTTTTTTTCBGG--GTBCSSCCEEEEEEEEEEECCCCGGGCCHH
T ss_pred             CeEEEeCCCCccccchHHHHHHhcCCCCCeEEEEECCccccCcCCCCc--cCCCCCCeEEEEEEEeecccccchhcCCHH
Confidence            8999999886   58999999999999999999999999999988763  248999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK  392 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~  392 (437)
                      .....+..++..|+.+++.|+|++|+..|++|+.+.|.......++......+...+++|+|.||+++++|++|+.+|++
T Consensus       142 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  221 (336)
T 1p5q_A          142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK  221 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999998877777777888888899999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          393 VLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       393 al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +|+++|+++++|+++|.+|..+|++++|+.+|++|++++|++.
T Consensus       222 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  264 (336)
T 1p5q_A          222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK  264 (336)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence            9999999999999999999999999999999999999999885

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.97  E-value=1e-30  Score=253.76  Aligned_cols=288  Identities=18%  Similarity=0.195  Sum_probs=175.2

Q ss_pred             CCccCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEc-CCcEEecccCCCCCeEEEeCCc-cccccHHHHhc
Q 013755           33 APLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLL-DGTKFDSTRDRYDPLTFKLGTG-QVATGLDNGII  110 (437)
Q Consensus        33 ~~~~~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~-~G~~~~st~~~~~p~~~~~g~~-~~~~g~~~~l~  110 (437)
                      .+..+.....++++|++|+++++|+| ..|..||.|+|||++++. +|++|++|+..+.|+.|.+|.+ ++|+||+++|.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~g~g-~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l~  114 (338)
T 2if4_A           36 VPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVA  114 (338)
T ss_dssp             CCCCCCSCCEEEETTEEEEEEECCBS-CCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHH
T ss_pred             CCCCCCcCceeCCCCeEEEEEeCCCC-CCCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHHHHHHh
Confidence            34455566778899999999999999 799999999999999998 4999999987778999999999 99999999999


Q ss_pred             cccCCceEEEEEecCCCCCCCCCCC---CCCCCCCcEEEEEEEeceeeeeccCCCccceEEEEeccccCCCCCCCCeEEE
Q 013755          111 TMKKRECAVFTFTLPSELRFGVEGR---DSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLV  187 (437)
Q Consensus       111 ~m~~G~~~~~~~~ip~~~ayg~~~~---~~i~~~~~~~f~v~l~~~~~~~d~~~dg~v~k~i~~~G~g~~~p~~~~~V~v  187 (437)
                      +|++|++++|  +|||.++||..+.   +.||++++++|+|+|..+....+...             -+.....      
T Consensus       115 ~m~~Ge~~~~--~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e~~~-------------~~~~~~~------  173 (338)
T 2if4_A          115 SMKSGERALV--HVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKA-------------RSDMTVE------  173 (338)
T ss_dssp             HCCBTCEEEE--EECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCCCBT-------------TTBCCHH------
T ss_pred             cCCCCCeEEE--EECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCccccc-------------cccCCHH------
Confidence            9999999999  9999999999986   58999999999999888753221000             0000000      


Q ss_pred             EEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEEcCC-CCcchHHHHHhcccccCcEEEEE
Q 013755          188 KYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE-EQVIAGLDRVAATMKKEEWAIVT  266 (437)
Q Consensus       188 ~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~-~~~~~gl~~~l~~m~~GE~~~i~  266 (437)
                               ......              ......|..+.            ..|+ ...+..++.++....        
T Consensus       174 ---------~~~~~a--------------~~~~~~g~~~~------------~~g~~~~A~~~y~~Al~~~p--------  210 (338)
T 2if4_A          174 ---------ERIGAA--------------DRRKMDGNSLF------------KEEKLEEAMQQYEMAIAYMG--------  210 (338)
T ss_dssp             ---------HHHHHH--------------HHHHHHHHHTC------------SSSCCHHHHHHHHHHHHHSC--------
T ss_pred             ---------HHHHHH--------------HHHHHHHHHHH------------hcCCHHHHHHHHHHHHHHhc--------
Confidence                     000000              00000011100            0010 012333444433210        


Q ss_pred             EcCCCCCCccccccccccCCCCceEEEEEEEeeeecccCCCCCC--hHHH--HHHHHHHHHHhhHHHhCCcHHHHHHHHH
Q 013755          267 INHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMN--NQGK--IEAAGRKKEEGNLLFKNGKYERAGKKYN  342 (437)
Q Consensus       267 i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~~~--~~~~--~~~~~~~~~~g~~~~~~g~~~~A~~~y~  342 (437)
                                          .+.                .+...  ..+.  .-....+.+.|..+++.++|++|+..|+
T Consensus       211 --------------------~~~----------------~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~  254 (338)
T 2if4_A          211 --------------------DDF----------------MFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN  254 (338)
T ss_dssp             --------------------HHH----------------HHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             --------------------cch----------------hhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                                000                00000  0011  1122478899999999999999999999


Q ss_pred             HHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhccHHHHH
Q 013755          343 KAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAY-MEIADLILAE  421 (437)
Q Consensus       343 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~-~~lg~~~~A~  421 (437)
                      ++|.+.|.+               ..+|+++|.+|..+++|++|+.+|+++++++|++..++..++.+. ...+..++|.
T Consensus       255 ~al~~~p~~---------------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          255 IVLTEEEKN---------------PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             HHHHHCTTC---------------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998764               377999999999999999999999999999999999999999984 4567788999


Q ss_pred             HHHHHHHHhCCCCCC
Q 013755          422 LDIKKAIEADPQNRN  436 (437)
Q Consensus       422 ~~~~~al~l~P~n~~  436 (437)
                      ..|++++.+.|+++.
T Consensus       320 ~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          320 EMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ---------------
T ss_pred             HHHHHhhCCCCCCCC
Confidence            999999999998864

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.95  E-value=1.1e-27  Score=241.99  Aligned_cols=248  Identities=24%  Similarity=0.292  Sum_probs=159.6

Q ss_pred             eccC--CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCC
Q 013755          157 VDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGE  234 (437)
Q Consensus       157 ~d~~--~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~  234 (437)
                      .+++  .++++.++|+++|.|...|..++.|+|+|..+                           +.||++||++ +.++
T Consensus        23 ~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~---------------------------~~~g~~~dss-~~~~   74 (457)
T 1kt0_A           23 EDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGK---------------------------LSNGKKFDSS-HDRN   74 (457)
T ss_dssp             ----------CEEEC--------CCCBTCEEEEEEEEE---------------------------C-----CBC------
T ss_pred             ccccCCCCCcEEEEEEECCCCCCCCCCCCEEEEEEEEE---------------------------ECCCCEEecc-CCCC
Confidence            3555  78899999999999987799999988866554                           4466778877 7778


Q ss_pred             CCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeecccCC--------
Q 013755          235 QPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVP--------  306 (437)
Q Consensus       235 ~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~~~~--------  306 (437)
                      .|+.|.+|.+.+++||+.+|.+|++||++.|+|||.++||..+.+.   .||++++++|+|+|+++......        
T Consensus        75 ~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~~~~~yg~~g~~~---~i~~~~~l~~~v~l~~~~~~~~~~dg~~~k~  151 (457)
T 1kt0_A           75 EPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLP---KIPSNATLFFEIELLDFKGEDLFEDGGIIRR  151 (457)
T ss_dssp             -CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEECEETTSSSSEEEE
T ss_pred             CCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEChHHhccccCCCC---CCCCCCcEEEEEeeceeecccccCCcceEEE
Confidence            8999999999999999999999999999999999999999988765   69999999999999988653111        


Q ss_pred             -------CCCChHH---------HH-----HH--HHHHHHHhhHHHhCCcHHHHHHHHHH----HHHhhccCCC------
Q 013755          307 -------WEMNNQG---------KI-----EA--AGRKKEEGNLLFKNGKYERAGKKYNK----AADCVSEDGS------  353 (437)
Q Consensus       307 -------~~~~~~~---------~~-----~~--~~~~~~~g~~~~~~g~~~~A~~~y~~----al~~~~~~~~------  353 (437)
                             +......         .+     ..  .......|....-...++.|+..+++    +|.+.|...-      
T Consensus       152 i~~~g~~~~~p~~g~~V~v~y~g~~~g~~f~~~~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~  231 (457)
T 1kt0_A          152 TKRKGEGYSNPNEGATVEIHLEGRCGGRMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKP  231 (457)
T ss_dssp             EEECCBCSCCCCTTCEEEEEEEEEETTEEEEEEEEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBG
T ss_pred             EEecCCCCCCCCCCCEEEEEEEEEeCCeEEecCceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCc
Confidence                   1000000         00     00  00000001111111244555555444    3333221100      


Q ss_pred             ----------------------CC-hHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC----------
Q 013755          354 ----------------------FV-DDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN----------  400 (437)
Q Consensus       354 ----------------------~~-~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~----------  400 (437)
                                            .. -+...........++.++|.+++++++|++|+.+|++|++++|.+          
T Consensus       232 ~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~  311 (457)
T 1kt0_A          232 KFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKA  311 (457)
T ss_dssp             GGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHH
T ss_pred             ccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHH
Confidence                                  00 000112233456789999999999999999999999999999998          


Q ss_pred             -----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          401 -----VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       401 -----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                           ..+|+++|.||+.+++|++|+.+|++||+++|+|.
T Consensus       312 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~  351 (457)
T 1kt0_A          312 SESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE  351 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH
Confidence                 79999999999999999999999999999999875

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.93  E-value=3.1e-25  Score=215.04  Aligned_cols=267  Identities=21%  Similarity=0.277  Sum_probs=197.9

Q ss_pred             eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCcc---ccccHHHHhccccCCceE
Q 013755           42 GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQ---VATGLDNGIITMKKRECA  118 (437)
Q Consensus        42 ~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~---~~~g~~~~l~~m~~G~~~  118 (437)
                      .++++||+|+|+++|+|..+|..||.|+|||++++ +|++|++|     |+.|.+|.|.   ++++|+++|.+|++|+++
T Consensus        21 ~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~-----~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~   94 (336)
T 1p5q_A           21 MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-----ELRFEIGEGENLDLPYGLERAIQRMEKGEHS   94 (336)
T ss_dssp             -CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEE
T ss_pred             ecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC-----CeEEEeCCCCccccchHHHHHHhcCCCCCeE
Confidence            45889999999999999658999999999999999 99999986     7999999887   589999999999999999


Q ss_pred             EEEEecCCCCCCCCCCCC--CCCCCCcEEEEEEEeceeeeeccCCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCC
Q 013755          119 VFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDG  196 (437)
Q Consensus       119 ~~~~~ip~~~ayg~~~~~--~i~~~~~~~f~v~l~~~~~~~d~~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g  196 (437)
                      .+  .|+|+++||..+..  .||+++.+.|++.|..+........      +.+..     .|...              
T Consensus        95 ~l--~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~------~a~~~-----~p~~a--------------  147 (336)
T 1p5q_A           95 IV--YLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWE------MNSEE-----KLEQS--------------  147 (336)
T ss_dssp             EE--EECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGG------CCHHH-----HHHHH--------------
T ss_pred             EE--EECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhc------CCHHH-----HHHHH--------------
Confidence            99  99999999999977  6999999999999888743221110      00000     00000              


Q ss_pred             eeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEEcCC-CCcchHHHHHhcccccCcEEEEEEcCCCCCCc
Q 013755          197 TMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE-EQVIAGLDRVAATMKKEEWAIVTINHEYGFGN  275 (437)
Q Consensus       197 ~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~-~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~  275 (437)
                      ....                    .-|..+            +..|+ ...+..++.++...                  
T Consensus       148 ~~~~--------------------~~g~~~------------~~~g~~~~A~~~y~~Al~~~------------------  177 (336)
T 1p5q_A          148 TIVK--------------------ERGTVY------------FKEGKYKQALLQYKKIVSWL------------------  177 (336)
T ss_dssp             HHHH--------------------HHHHHH------------HHHTCHHHHHHHHHHHHHHT------------------
T ss_pred             HHHH--------------------HHHHHH------------HHCCCHHHHHHHHHHHHHHh------------------
Confidence            0000                    001100            01111 02233444444321                  


Q ss_pred             cccccccccCCCCceEEEEEEEeeeecccCCCCCChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCC
Q 013755          276 VEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV  355 (437)
Q Consensus       276 ~~~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~  355 (437)
                                |....         +.     .+.........+..+.+.|..+++.|+|++|+..|++|+.+.|.+    
T Consensus       178 ----------p~~~~---------~~-----~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----  229 (336)
T 1p5q_A          178 ----------EYESS---------FS-----NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN----  229 (336)
T ss_dssp             ----------TTCCC---------CC-----SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred             ----------hcccc---------CC-----hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----
Confidence                      11000         00     000112233446888999999999999999999999999998764    


Q ss_pred             hHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH-HHHHHHHHHh
Q 013755          356 DDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILA-ELDIKKAIEA  430 (437)
Q Consensus       356 ~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A-~~~~~~al~l  430 (437)
                                 ..+++++|.+|..+|+|++|+.+|+++++++|++..++++++.++..++++++| ...|++++..
T Consensus       230 -----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          230 -----------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             -----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       377999999999999999999999999999999999999999999999999999 5567776643

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.92  E-value=8.5e-25  Score=182.35  Aligned_cols=121  Identities=44%  Similarity=0.746  Sum_probs=104.1

Q ss_pred             cCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEe
Q 013755           44 GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFT  123 (437)
Q Consensus        44 ~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~  123 (437)
                      +++|++|+++++|+|...|+.||.|+|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++|  +
T Consensus        12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v--~   89 (135)
T 1r9h_A           12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEF--T   89 (135)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEE--E
T ss_pred             CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEE--E
Confidence            78999999999999955799999999999999999999999987668999999999999999999999999999999  9


Q ss_pred             cCCCCCCCCCCCC-CCCCCCcEEEEEEEeceeeeeccC--CCccceE
Q 013755          124 LPSELRFGVEGRD-SLPPNSVVQFEVELVSWITVVDLS--KDGGIVK  167 (437)
Q Consensus       124 ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~~~~d~~--~dg~v~k  167 (437)
                      |||+++||..+.+ .||++++++|+|+|.++... ++.  +||+++|
T Consensus        90 ip~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~~-~l~~~~d~~v~k  135 (135)
T 1r9h_A           90 IRSDYGYGDAGSPPKIPGGATLIFEVELFEWSAE-DISPDRDGTILR  135 (135)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC--------------
T ss_pred             EChHHcCCCCCCCCCcCcCCcEEEEEEEEEeecC-CcCcCCCCcccC
Confidence            9999999998875 89999999999999998753 454  7777654

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.92  E-value=2e-24  Score=174.78  Aligned_cols=109  Identities=40%  Similarity=0.635  Sum_probs=102.9

Q ss_pred             eecCCCeEEEEEEccCCCCC-CCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEE
Q 013755           42 GLGNSGIKKKLLKNGVDWDT-PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVF  120 (437)
Q Consensus        42 ~~~~~g~~~~~~~~G~g~~~-~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~  120 (437)
                      .++++|++|+++++|+| .. |+.||.|+|||++++.||++|++|+..+.|+.|.+|.+++++||+++|.+|++|++++|
T Consensus         2 ~~~~~g~~~~~~~~G~g-~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v   80 (113)
T 1yat_A            2 EVIEGNVKIDRISPGDG-ATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARL   80 (113)
T ss_dssp             EECGGGCEEEEEECCCS-SCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEE
T ss_pred             CCCCCCeEEEEEECCCC-cccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEE
Confidence            36789999999999999 66 99999999999999999999999998778999999999999999999999999999999


Q ss_pred             EEecCCCCCCCCCCCC-CCCCCCcEEEEEEEece
Q 013755          121 TFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (437)
Q Consensus       121 ~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~  153 (437)
                        .|||+++||..+.+ .||++++++|+|+|.++
T Consensus        81 --~ip~~~ayG~~~~~~~Ip~~~~l~f~vel~~i  112 (113)
T 1yat_A           81 --TIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             --EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             --EECHHHCcCCCCCCCCcCCCCeEEEEEEEEEe
Confidence              99999999999865 79999999999999876

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.91  E-value=2.6e-24  Score=175.92  Aligned_cols=108  Identities=41%  Similarity=0.671  Sum_probs=101.5

Q ss_pred             cCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCC-------CCCeEEEeCCccccccHHHHhccccCCc
Q 013755           44 GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDR-------YDPLTFKLGTGQVATGLDNGIITMKKRE  116 (437)
Q Consensus        44 ~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~-------~~p~~~~~g~~~~~~g~~~~l~~m~~G~  116 (437)
                      .|+|++|+++++|+|...|+.||.|+|||++++.||++|++|+..       +.|+.|.+|.+++++||+++|.+|++|+
T Consensus         2 ~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   81 (119)
T 3kz7_A            2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE   81 (119)
T ss_dssp             CSCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred             CCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCC
Confidence            589999999999999567999999999999999999999999863       4899999999999999999999999999


Q ss_pred             eEEEEEecCCCCCCCCCCCC--CCCCCCcEEEEEEEece
Q 013755          117 CAVFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSW  153 (437)
Q Consensus       117 ~~~~~~~ip~~~ayg~~~~~--~i~~~~~~~f~v~l~~~  153 (437)
                      +++|  .|||++|||..+.+  .||++++++|+|+|+++
T Consensus        82 ~~~v--~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           82 KARL--EIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             EEEE--EECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             EEEE--EECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence            9999  99999999999876  79999999999999875

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.91  E-value=1e-24  Score=183.83  Aligned_cols=115  Identities=38%  Similarity=0.654  Sum_probs=106.6

Q ss_pred             CCce-eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCc
Q 013755           38 GEER-GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRE  116 (437)
Q Consensus        38 ~~~~-~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~  116 (437)
                      ++++ ..+++||+|+++++|+|...|+.||.|+|||++++.||++|++|+.++.|+.|.+|.+++|+||+++|.+|++|+
T Consensus        26 ~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge  105 (144)
T 3o5e_A           26 GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGE  105 (144)
T ss_dssp             CEECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGGGTSCEEEETTSSSSCHHHHHHHTTCCBTC
T ss_pred             cccccccCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecccCCCeEEEeCCCcccHHHHHHHhCCCCCC
Confidence            3444 347999999999999995589999999999999999999999999888999999999999999999999999999


Q ss_pred             eEEEEEecCCCCCCCCCCCC-CCCCCCcEEEEEEEecee
Q 013755          117 CAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (437)
Q Consensus       117 ~~~~~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~  154 (437)
                      +++|  +|||+++||..+.+ .||++++++|+|+|+++.
T Consensus       106 ~~~v--~ipp~~aYG~~g~~~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A          106 ICHL--LCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             EEEE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             EEEE--EEChHHCcCCCCCCCCcCCCCeEEEEEEEEEec
Confidence            9999  99999999999876 899999999999999874

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.91  E-value=3.6e-24  Score=177.69  Aligned_cols=110  Identities=40%  Similarity=0.688  Sum_probs=104.3

Q ss_pred             eeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEE
Q 013755           41 RGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVF  120 (437)
Q Consensus        41 ~~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~  120 (437)
                      ..++++|++|+++++|+| ..|+.||.|+|||++++.||++|++|++.+.|+.|.+|.+++++||+++|.+|++|++++|
T Consensus        23 ~~~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v  101 (133)
T 2y78_A           23 VVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRL  101 (133)
T ss_dssp             CEECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEE
T ss_pred             cEECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEE
Confidence            457899999999999999 8999999999999999999999999998778999999999999999999999999999999


Q ss_pred             EEecCCCCCCCCCCCC-CCCCCCcEEEEEEEece
Q 013755          121 TFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (437)
Q Consensus       121 ~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~  153 (437)
                        .|||+++||..+.+ .||++++++|+|+|+++
T Consensus       102 --~ip~~~aYG~~~~~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          102 --TIPPQLGYGARGAGGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             --EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             --EECcHHhCCCCCCCCCCCCCCeEEEEEEEEEC
Confidence              99999999999876 79999999999999764

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.91  E-value=2e-24  Score=178.51  Aligned_cols=111  Identities=38%  Similarity=0.646  Sum_probs=104.7

Q ss_pred             eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEE
Q 013755           42 GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFT  121 (437)
Q Consensus        42 ~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~  121 (437)
                      ..+++|++|+++++|+|...|+.||.|+|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++| 
T Consensus        15 ~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v-   93 (128)
T 3o5q_A           15 SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHL-   93 (128)
T ss_dssp             SSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEE-
T ss_pred             ccCCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEE-
Confidence            3588999999999999955799999999999999999999999988778999999999999999999999999999999 


Q ss_pred             EecCCCCCCCCCCCC-CCCCCCcEEEEEEEecee
Q 013755          122 FTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (437)
Q Consensus       122 ~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~  154 (437)
                       .|||++|||..+.+ .||++++++|+|+|+++.
T Consensus        94 -~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~  126 (128)
T 3o5q_A           94 -LCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK  126 (128)
T ss_dssp             -EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             -EEChHHcCCCCCCCCCcCCCCEEEEEEEEEEec
Confidence             99999999999876 899999999999999874

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=99.91  E-value=1.7e-23  Score=203.36  Aligned_cols=161  Identities=35%  Similarity=0.580  Sum_probs=148.3

Q ss_pred             cCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEe
Q 013755           44 GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFT  123 (437)
Q Consensus        44 ~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~  123 (437)
                      .+.++.++++++|.|+.+|..||.|+|||++++.||++|+++    .++.|.+|.+++++||+++|.+|++||++++  +
T Consensus       125 ~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt~~~~~----~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~--~  198 (356)
T 3jxv_A          125 KDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS----EGVEFTVKDGHLCPALAKAVKTMKKGEKVLL--A  198 (356)
T ss_dssp             SSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEE----EEEEEEGGGCSSSHHHHHHHTTCCBTCEEEE--E
T ss_pred             cCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCCEEecc----CCEEEEeCCCCcchHHHHHHhhCCCCCEEEE--E
Confidence            678999999999999999999999999999999999999997    3699999999999999999999999999999  9


Q ss_pred             cCCCCCCCCCCCC------CCCCCCcEEEEEEEeceeeeeccCCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCe
Q 013755          124 LPSELRFGVEGRD------SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGT  197 (437)
Q Consensus       124 ip~~~ayg~~~~~------~i~~~~~~~f~v~l~~~~~~~d~~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~  197 (437)
                      |||+++||+.+.+      .||+++++.|+|+|.++....++..|+++.++++++|.|+..|..++.|+++|..++.+|+
T Consensus       199 v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~  278 (356)
T 3jxv_A          199 VKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGT  278 (356)
T ss_dssp             ECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSC
T ss_pred             EChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccccccccceeEEeeecccccCCCCCCCEEEEEEEEEECCCC
Confidence            9999999999876      4999999999999999998889999999999999999999999999999999999999998


Q ss_pred             eeeccC---CCCeeEE
Q 013755          198 MVAKTP---EEGVEFY  210 (437)
Q Consensus       198 ~v~~~~---~~~~~~~  210 (437)
                      ++.++.   ..++.|.
T Consensus       279 ~fd~~~~~~~~p~~f~  294 (356)
T 3jxv_A          279 VFLKKGHDEQEPFEFK  294 (356)
T ss_dssp             EEEEESCTTSCCCEEE
T ss_pred             EEeeccccCCcCEEEE
Confidence            776542   3445553

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.91  E-value=8.6e-24  Score=184.51  Aligned_cols=122  Identities=27%  Similarity=0.446  Sum_probs=111.1

Q ss_pred             CCccCCCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEc-CCcEEecccCCCCCeEEEeCCc-cccccHHHHhc
Q 013755           33 APLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLL-DGTKFDSTRDRYDPLTFKLGTG-QVATGLDNGII  110 (437)
Q Consensus        33 ~~~~~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~-~G~~~~st~~~~~p~~~~~g~~-~~~~g~~~~l~  110 (437)
                      .+.+....+.++++|++|+++++|+| ..|+.||.|+|||++++. +|++|++|+.++.|+.|.+|.+ ++++||+++|.
T Consensus        36 ~p~~~~~~~~~~~~gl~~~vl~~G~G-~~~~~Gd~V~v~Y~g~l~~dG~~fdss~~~~~p~~f~lG~g~~vi~G~eeaL~  114 (180)
T 2f4e_A           36 VPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVA  114 (180)
T ss_dssp             SCCCCCSCCEEEETTEEEEEEECCBS-CCBCTTCEEEEEEEEEETTTCCEEEETTTTTCCEEEETTSCCGGGHHHHHHHT
T ss_pred             CCcccCCCcEECCCceEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCcEEeccCccCCCEEEEeCCCCchhHHHHHHHh
Confidence            34455566778999999999999999 899999999999999998 6999999998889999999999 99999999999


Q ss_pred             cccCCceEEEEEecCCCCCCCCCCC---CCCCCCCcEEEEEEEeceeeee
Q 013755          111 TMKKRECAVFTFTLPSELRFGVEGR---DSLPPNSVVQFEVELVSWITVV  157 (437)
Q Consensus       111 ~m~~G~~~~~~~~ip~~~ayg~~~~---~~i~~~~~~~f~v~l~~~~~~~  157 (437)
                      +|++|++++|  +|||+++||..+.   +.||++++++|+|+|+++....
T Consensus       115 gMk~Ge~~~v--~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~  162 (180)
T 2f4e_A          115 SMKSGERALV--HVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETK  162 (180)
T ss_dssp             TCCBTCEEEE--EECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBC
T ss_pred             CCCCCCEEEE--EECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCc
Confidence            9999999999  9999999999985   5899999999999999986543

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.91  E-value=8e-24  Score=174.45  Aligned_cols=112  Identities=29%  Similarity=0.496  Sum_probs=104.9

Q ss_pred             eeecCCCeEEEEEEccC--CCCCCCCCCEEEEEEEEEEc-CCcEEecccC--CCCCeEEEeCCccccccHHHHhccccCC
Q 013755           41 RGLGNSGIKKKLLKNGV--DWDTPEFGDEVTIHYVGTLL-DGTKFDSTRD--RYDPLTFKLGTGQVATGLDNGIITMKKR  115 (437)
Q Consensus        41 ~~~~~~g~~~~~~~~G~--g~~~~~~gd~V~v~y~~~~~-~G~~~~st~~--~~~p~~~~~g~~~~~~g~~~~l~~m~~G  115 (437)
                      ..++++|++|+++++|+  | ..|+.||.|+|||++++. ||++|++|+.  .+.|+.|.+|.+++++||+++|.+|++|
T Consensus         7 ~~~~~~gl~~~~l~~g~~~g-~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~G   85 (125)
T 4dip_A            7 ALIPEPEVKIEVLQKPFICH-RKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVG   85 (125)
T ss_dssp             GGCCCCCCEEEEEECCSCCS-CCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTT
T ss_pred             eEECCCCeEEEEEEcCCCCC-CcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCC
Confidence            34688999999999998  6 899999999999999998 9999999984  4589999999999999999999999999


Q ss_pred             ceEEEEEecCCCCCCCCCCCCCCCCCCcEEEEEEEeceee
Q 013755          116 ECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWIT  155 (437)
Q Consensus       116 ~~~~~~~~ip~~~ayg~~~~~~i~~~~~~~f~v~l~~~~~  155 (437)
                      ++++|  .|||++|||..+.+.||++++++|+|+|+++..
T Consensus        86 e~~~~--~ip~~~aYG~~g~~~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           86 EKRKL--IIPPALGYGKEGKGKIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             CEEEE--EECGGGTTTTTCBTTBCTTCCEEEEEEEEEEEC
T ss_pred             CEEEE--EEChHHhcCCCCCCCCCCCCeEEEEEEEEEEEc
Confidence            99999  999999999999889999999999999999753

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.91  E-value=1.3e-24  Score=184.83  Aligned_cols=87  Identities=24%  Similarity=0.334  Sum_probs=82.2

Q ss_pred             eecCCCeEEEEEEccCCCCC--CCCCCEEEEEEEEEEc--CCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCce
Q 013755           42 GLGNSGIKKKLLKNGVDWDT--PEFGDEVTIHYVGTLL--DGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKREC  117 (437)
Q Consensus        42 ~~~~~g~~~~~~~~G~g~~~--~~~gd~V~v~y~~~~~--~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~  117 (437)
                      .++++||+|+++++|+| ..  ++.||.|+|||++++.  ||++||||++++.|+.|.+|.+++|+||+++|.+|++|++
T Consensus         6 ~~~~~Gv~~~vl~~G~G-~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~   84 (165)
T 2lkn_A            6 RLREDGIQKRVIQEGRG-ELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEI   84 (165)
T ss_dssp             HHHTTSCCCCEEECCSS-CCCCCCTTCEEEEECEEECSSSSCCEEEESTTTTCCEEEESSSSCSCSHHHHHHTTCCTTCE
T ss_pred             cccCCCeEEEEEECCcC-CCCCCCCCCEEEEEEEEEEeCCCccEEEecccCCCCEEEEecCCCccHHHHHHHhcCccCce
Confidence            46899999999999999 54  4689999999999996  5999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCCCCCC
Q 013755          118 AVFTFTLPSELRFG  131 (437)
Q Consensus       118 ~~~~~~ip~~~ayg  131 (437)
                      ++|  +|||++|||
T Consensus        85 ~~~--~ipp~laYG   96 (165)
T 2lkn_A           85 AQF--LCDIKHVVL   96 (165)
T ss_dssp             EEE--ECCHHHHSS
T ss_pred             EEE--EECHHHhcC
Confidence            999  999999999

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.90  E-value=8.9e-24  Score=174.75  Aligned_cols=109  Identities=41%  Similarity=0.738  Sum_probs=102.4

Q ss_pred             eecCCCeEEE--EEEccCCCCC-CCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceE
Q 013755           42 GLGNSGIKKK--LLKNGVDWDT-PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA  118 (437)
Q Consensus        42 ~~~~~g~~~~--~~~~G~g~~~-~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~  118 (437)
                      ..+++|++|+  ++++|+| .. |+.||.|+|+|++++.||++|++|+..+.|+.|.+|.+++++||+++|.+|++|+++
T Consensus        18 ~~~~~Gl~~~K~~l~~G~G-~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~   96 (130)
T 2lgo_A           18 GPGSMSAQLEKKVLTPGDG-VTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKA   96 (130)
T ss_dssp             SSSSSSCCCCEEEEECCCS-SCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEEE
T ss_pred             eeCCCceEEEEEEEeccCC-CccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCEE
Confidence            4588999999  9999999 66 999999999999999899999999987789999999999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCCCC-CCCCCCcEEEEEEEece
Q 013755          119 VFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (437)
Q Consensus       119 ~~~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~  153 (437)
                      +|  .|||+++||..+.+ .||++++++|+|+|.++
T Consensus        97 ~v--~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           97 LF--TIPYQLAYGERGYPPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             EE--EECTTTSTTTTCCSTTSCSSCCEEEEEEEEEC
T ss_pred             EE--EECcHHHCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            99  99999999999876 79999999999999764

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.90  E-value=1.1e-23  Score=168.79  Aligned_cols=105  Identities=33%  Similarity=0.668  Sum_probs=98.5

Q ss_pred             CeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCC
Q 013755           47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPS  126 (437)
Q Consensus        47 g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~  126 (437)
                      ||+|+++++|+|...|+.||.|+|||++++.||++|++|+..+.|+.|.+|.+++++||+++|.+|++|++++|  .|||
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~--~ip~   78 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKL--TISP   78 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEE--EECG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEE--EECH
Confidence            79999999999933499999999999999999999999987668999999999999999999999999999999  9999


Q ss_pred             CCCCCCCCCC-CCCCCCcEEEEEEEece
Q 013755          127 ELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (437)
Q Consensus       127 ~~ayg~~~~~-~i~~~~~~~f~v~l~~~  153 (437)
                      +++||..+.+ .||++++++|+|+|.++
T Consensus        79 ~~ayG~~~~~~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           79 DYAYGATGHPGIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             GGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             HHccCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            9999999875 89999999999999875

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.90  E-value=8.7e-24  Score=181.56  Aligned_cols=112  Identities=32%  Similarity=0.559  Sum_probs=104.7

Q ss_pred             CceeecCCCeEEEEEEccCCCCC-CCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCce
Q 013755           39 EERGLGNSGIKKKLLKNGVDWDT-PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKREC  117 (437)
Q Consensus        39 ~~~~~~~~g~~~~~~~~G~g~~~-~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~  117 (437)
                      ..+.++++|++|+++++|+| .. |..||.|+|||++++.||++|++|+.++.|+.|.+|  ++|+||+++|.+|++|++
T Consensus        30 ~~~~~~~sGl~~~vl~~G~G-~~~~~~gd~V~v~Y~g~l~dG~~fdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Ge~  106 (167)
T 1jvw_A           30 PDAVKLPSGLVFQRIARGSG-KRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPN--EVIKGWTEALQLMREGDR  106 (167)
T ss_dssp             TTEEECTTSCEEEEEECCCC-SBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECGG--GSCHHHHHHHTTCCTTCE
T ss_pred             CCcEECCCCEEEEEEEcCCC-CcCCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEeC--chhHHHHHHHcCCCCCCE
Confidence            35678999999999999999 76 999999999999999999999999887789999995  999999999999999999


Q ss_pred             EEEEEecCCCCCCCCCCCC-CCCCCCcEEEEEEEeceee
Q 013755          118 AVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWIT  155 (437)
Q Consensus       118 ~~~~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~~  155 (437)
                      ++|  +|||+++||..+.+ .||++++++|+|+|+++..
T Consensus       107 ~~~--~Ip~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~~  143 (167)
T 1jvw_A          107 WRL--FIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKD  143 (167)
T ss_dssp             EEE--EECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGG
T ss_pred             EEE--EECchhhCCCCCCCCCcCCCCeEEEEEEEEEEEc
Confidence            999  99999999999876 8999999999999999864

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.90  E-value=1.4e-23  Score=186.83  Aligned_cols=108  Identities=28%  Similarity=0.449  Sum_probs=102.1

Q ss_pred             CceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceE
Q 013755           39 EERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA  118 (437)
Q Consensus        39 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~  118 (437)
                      ..+.++++|++|+++++|+| +.|..||.|+|||++++.||++|++|   +.|+.|.+|  ++|+||+++|.+|++|+++
T Consensus       110 ~gv~~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss---~~P~~f~lG--~vI~G~eeaL~gMk~Gek~  183 (219)
T 3oe2_A          110 PGVKELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRLD--SVISGWTSALQNMPTGAKW  183 (219)
T ss_dssp             TTCEECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEEC---SSCEEEEGG--GSCHHHHHHHTTCCTTCEE
T ss_pred             CCcEECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeecc---CCcEEEEec--chhHHHHHHHhCCCCCCEE
Confidence            34567999999999999999 89999999999999999999999999   589999998  8999999999999999999


Q ss_pred             EEEEecCCCCCCCCCCCC-CCCCCCcEEEEEEEecee
Q 013755          119 VFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (437)
Q Consensus       119 ~~~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~  154 (437)
                      +|  +|||++|||..+.+ .|||+++++|+|+|+++.
T Consensus       184 ~v--~IPp~lAYG~~g~~~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          184 RL--VIPSDQAYGAEGAGDLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             EE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             EE--EECchhcCCCCCCCCCCCCCCeEEEEEEEEEEe
Confidence            99  99999999999988 599999999999999875

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.90  E-value=4e-23  Score=171.16  Aligned_cols=114  Identities=39%  Similarity=0.605  Sum_probs=102.0

Q ss_pred             ceeecCCCeEE-EEEEcc-CC-CCCCCCCCEEEEEEEEEE-cCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCC
Q 013755           40 ERGLGNSGIKK-KLLKNG-VD-WDTPEFGDEVTIHYVGTL-LDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKR  115 (437)
Q Consensus        40 ~~~~~~~g~~~-~~~~~G-~g-~~~~~~gd~V~v~y~~~~-~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G  115 (437)
                      .+.++++|+.| +++++| +| +..|+.||.|+|||++++ .||++|++|+.++.|+.|.+|.+++++||+++|.+|++|
T Consensus         9 ~~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~~~~p~~f~lG~g~~i~g~e~~l~gm~~G   88 (129)
T 2vn1_A            9 KVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKN   88 (129)
T ss_dssp             EEECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGGTTCCEEEETTSSSSCHHHHHHHTTCCTT
T ss_pred             CcEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCCCCccEEEEeCCCCcCHHHHHHHhCCCCC
Confidence            34567777665 689976 44 389999999999999999 799999999987789999999999999999999999999


Q ss_pred             ceEEEEEecCCCCCCCCCCCC-CCCCCCcEEEEEEEeceee
Q 013755          116 ECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWIT  155 (437)
Q Consensus       116 ~~~~~~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~~  155 (437)
                      ++++|  .|||+++||..+.+ .||++++++|+|+|+++..
T Consensus        89 e~~~v--~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           89 EKCLV--RIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             CEEEE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             CEEEE--EEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence            99999  99999999999876 7999999999999998854

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.90  E-value=6.4e-24  Score=176.80  Aligned_cols=110  Identities=30%  Similarity=0.522  Sum_probs=96.5

Q ss_pred             eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEc-CCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEE
Q 013755           42 GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLL-DGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVF  120 (437)
Q Consensus        42 ~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~-~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~  120 (437)
                      .++++||+|+++++|+| ..++.||.|+|||++++. +|++|++|+..+.|+.|.+|.+++++||+++|.+|++|++++|
T Consensus        22 v~~~~gl~~~vl~~G~g-~~~~~gd~V~v~Y~g~l~~~G~~fdss~~~~~p~~f~lG~g~~i~G~e~aL~gm~~Ge~~~v  100 (134)
T 3b7x_A           22 ISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARF  100 (134)
T ss_dssp             SSSSSSEEEEEEECCEE-EECCTTCEEEEEEEEECTTCSSCSEEC-------CEEC-CCCCCHHHHHHHHTCEETCEEEE
T ss_pred             eeCCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCeEEEecCCCCCCEEEEcCCcchhHHHHHHHhCCCCCCEEEE
Confidence            45899999999999999 889999999999999998 6999999998778999999999999999999999999999999


Q ss_pred             EEecCCCCCCCCCCCC-CCCCCCcEEEEEEEecee
Q 013755          121 TFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (437)
Q Consensus       121 ~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~  154 (437)
                        +|||++|||..+.+ .||++++++|+|+|+++.
T Consensus       101 --~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A          101 --LFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             --EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             --EECHHHCcCCCCCCCCcCcCCeEEEEEEEEEEe
Confidence              99999999999876 799999999999999874

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.89  E-value=4.9e-23  Score=183.99  Aligned_cols=113  Identities=40%  Similarity=0.688  Sum_probs=106.2

Q ss_pred             CCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCce
Q 013755           38 GEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKREC  117 (437)
Q Consensus        38 ~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~  117 (437)
                      +..+.++++|++|+++++|+| ..|+.||.|+|||++++.||++|++|+..+.|+.|.+|.+++++||+++|.+|++|++
T Consensus        96 g~t~~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~  174 (209)
T 3uf8_A           96 GSTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGV  174 (209)
T ss_dssp             CCCCEECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCE
T ss_pred             cccccCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCE
Confidence            334567999999999999999 8899999999999999999999999998889999999999999999999999999999


Q ss_pred             EEEEEecCCCCCCCCCCCC-CCCCCCcEEEEEEEece
Q 013755          118 AVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (437)
Q Consensus       118 ~~~~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~  153 (437)
                      ++|  .|||++|||..+.+ .||++++++|+|+|+++
T Consensus       175 ~~v--~Ipp~~aYG~~g~~~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          175 RRL--TIPPQLGYGARGAAGVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             EEE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             EEE--EECcHHhCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            999  99999999999987 69999999999999864

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.89  E-value=3.8e-23  Score=184.31  Aligned_cols=111  Identities=31%  Similarity=0.471  Sum_probs=104.5

Q ss_pred             CceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceE
Q 013755           39 EERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA  118 (437)
Q Consensus        39 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~  118 (437)
                      ..+.++++|++|+++++|+| +.|..||.|+|||++++.||++|++|+.++.|+.|.+|  ++|+||+++|.+|++|+++
T Consensus        99 ~~v~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~  175 (213)
T 1fd9_A           99 PGVVVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTW  175 (213)
T ss_dssp             TTEEECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEE
T ss_pred             CCcEECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEcC--chhhHHHHHHcCCCCCCEE
Confidence            34678999999999999999 99999999999999999999999999987789999995  9999999999999999999


Q ss_pred             EEEEecCCCCCCCCCCCC-CCCCCCcEEEEEEEecee
Q 013755          119 VFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (437)
Q Consensus       119 ~~~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~  154 (437)
                      +|  +|||+++||..+.+ .||++++++|+|+|+++.
T Consensus       176 ~v--~IP~~laYG~~g~~~~Ipp~stLiF~VeLl~v~  210 (213)
T 1fd9_A          176 EI--YVPSGLAYGPRSVGGPIGPNETLIFKIHLISVK  210 (213)
T ss_dssp             EE--EECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEE
T ss_pred             EE--EECchhccCccCCCCCCCCCCeEEEEEEEEEEE
Confidence            99  99999999999875 899999999999999885

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.89  E-value=1.3e-23  Score=173.97  Aligned_cols=111  Identities=34%  Similarity=0.565  Sum_probs=103.7

Q ss_pred             ceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhcc------cc
Q 013755           40 ERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIIT------MK  113 (437)
Q Consensus        40 ~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~------m~  113 (437)
                      +..++++|++|+++++|+| ..++.||.|+|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+      |+
T Consensus         6 ~~~~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~   84 (129)
T 1u79_A            6 EFSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPML   84 (129)
T ss_dssp             CCEECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCB
T ss_pred             ccEECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccC
Confidence            3467999999999999999 8999999999999999989999999987668999999999999999999998      99


Q ss_pred             CCceEEEEEecCCCCCCCCCCC------CCCCCCCcEEEEEEEece
Q 013755          114 KRECAVFTFTLPSELRFGVEGR------DSLPPNSVVQFEVELVSW  153 (437)
Q Consensus       114 ~G~~~~~~~~ip~~~ayg~~~~------~~i~~~~~~~f~v~l~~~  153 (437)
                      +|++++|  .|||+++||..+.      +.||++++++|+|+|+++
T Consensus        85 ~Ge~~~v--~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           85 TGGKRTL--RIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             TTCEEEE--EECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCCEEEE--EEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            9999999  9999999999885      379999999999999875

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.89  E-value=1.2e-22  Score=172.53  Aligned_cols=109  Identities=30%  Similarity=0.469  Sum_probs=100.9

Q ss_pred             eecCCCe-EEEEEEccCCCC--CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceE
Q 013755           42 GLGNSGI-KKKLLKNGVDWD--TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA  118 (437)
Q Consensus        42 ~~~~~g~-~~~~~~~G~g~~--~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~  118 (437)
                      .++++|+ +|+++++|+| .  .|+.||.|+|||++++.||++|+++    .|+.|.+|.+++|+||+++|.+|++|+++
T Consensus        38 ~~~~sG~v~~~vl~~G~G-~~~~p~~gd~V~v~Y~g~l~dG~~fds~----~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~  112 (157)
T 2jwx_A           38 DILGNGLLRKKTLVPGPP-GSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETA  112 (157)
T ss_dssp             ESSSSSSEEEEEEECCST-TSCCCCTTEEEEEEEEEECTTSCEEEEE----EEEEEETTTTSSCHHHHHHTTTSCTTCEE
T ss_pred             eECCCCCEEEEEEEccCC-CccCCCCCCEEEEEEEEEECCCCEeecC----CCEEEEeCCCChhHHHHHHHcCCCCCCEE
Confidence            4788897 8999999999 5  8999999999999999999999984    78999999999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCC-CC-CCCCCCcEEEEEEEeceeeee
Q 013755          119 VFTFTLPSELRFGVEG-RD-SLPPNSVVQFEVELVSWITVV  157 (437)
Q Consensus       119 ~~~~~ip~~~ayg~~~-~~-~i~~~~~~~f~v~l~~~~~~~  157 (437)
                      +|  +|||+++||..+ .+ .||++++++|+|+|+++...+
T Consensus       113 ~v--~IP~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~~~  151 (157)
T 2jwx_A          113 MV--TADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDLE  151 (157)
T ss_dssp             EE--EECGGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEECS
T ss_pred             EE--EECchhcCCcccccCCCcCCCCeEEEEEEEEEEEccc
Confidence            99  999999999998 55 799999999999999986543

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.89  E-value=7.3e-23  Score=183.74  Aligned_cols=110  Identities=33%  Similarity=0.636  Sum_probs=103.8

Q ss_pred             CceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceE
Q 013755           39 EERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA  118 (437)
Q Consensus        39 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~  118 (437)
                      +.+.++++|++|+++++|+| ..|..||.|+|||++++.||++|++|+.++.|+.|.+|  ++|+||+++|.+|++|+++
T Consensus       114 ~~v~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~  190 (224)
T 1q6h_A          114 KGVKTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKI  190 (224)
T ss_dssp             TTEEECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEE
T ss_pred             CCeEECCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEcC--CcchhHHHHHcCCCCCCEE
Confidence            44567899999999999999 89999999999999999999999999988899999995  9999999999999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCCCCCCcEEEEEEEece
Q 013755          119 VFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSW  153 (437)
Q Consensus       119 ~~~~~ip~~~ayg~~~~~~i~~~~~~~f~v~l~~~  153 (437)
                      +|  +|||+++||..+.+.||++++++|+|+|+++
T Consensus       191 ~v--~IP~~laYG~~g~~~IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          191 KL--VIPPELAYGKAGVPGIPPNSTLVFDVELLDV  223 (224)
T ss_dssp             EE--EECGGGTTTTTCBTTBCTTCCEEEEEEEEEE
T ss_pred             EE--EECchhhcCcCCCCCCCCCCEEEEEEEEEEe
Confidence            99  9999999999998789999999999999876

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.88  E-value=2.6e-22  Score=163.50  Aligned_cols=108  Identities=31%  Similarity=0.455  Sum_probs=99.2

Q ss_pred             eeecCCC-eEEEEEEccCCC-CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceE
Q 013755           41 RGLGNSG-IKKKLLKNGVDW-DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA  118 (437)
Q Consensus        41 ~~~~~~g-~~~~~~~~G~g~-~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~  118 (437)
                      ..++++| ++|+++++|+|. ..|+.||.|+|||++++.||++|+++    .|+.|.+|.+++++||+++|.+|++|+++
T Consensus         7 ~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~----~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~   82 (118)
T 2awg_A            7 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETA   82 (118)
T ss_dssp             EESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEE----EEEEEETTSSCSCHHHHHHGGGSCTTCEE
T ss_pred             eEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECC----CCEEEEECCCChhHHHHHHHhCCCCCCEE
Confidence            3567777 999999999992 28999999999999999899999984    78999999999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCCCC-CCCCCCcEEEEEEEecee
Q 013755          119 VFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (437)
Q Consensus       119 ~~~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~  154 (437)
                      +|  .|||+++||..+.+ .||++++++|+|+|+++.
T Consensus        83 ~~--~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           83 MV--TADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             EE--EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             EE--EEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence            99  99999999999876 899999999999998874

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=4.7e-22  Score=165.71  Aligned_cols=110  Identities=30%  Similarity=0.447  Sum_probs=100.8

Q ss_pred             eeecCCC-eEEEEEEccCCCC--CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCce
Q 013755           41 RGLGNSG-IKKKLLKNGVDWD--TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKREC  117 (437)
Q Consensus        41 ~~~~~~g-~~~~~~~~G~g~~--~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~  117 (437)
                      ..++++| ++|+++++|+| .  .|+.||.|+|||++++.||++|+++    .|+.|.+|.+++++||+++|.+|++|++
T Consensus        11 ~~~~~~g~l~~~vl~~G~G-~~~~~~~gd~V~v~Y~g~~~dG~~fds~----~p~~f~lG~g~~i~G~e~~L~gm~~Ge~   85 (135)
T 2d9f_A           11 LDILGNGLLRKKTLVPGPP-GSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGET   85 (135)
T ss_dssp             EESSSSSSSEEEEEECCCS-SCCCCCTTSEEEEEEEEEESSSCEEEEE----EEEEEETTSCCSCTTTTTTGGGSCTTCE
T ss_pred             cEECCCCCEEEEEEEcCCC-CCccCCCCCEEEEEEEEEECCCCEEecC----CCEEEEeCCCChhHHHHHHHhCCCCCCE
Confidence            3567777 99999999999 5  8999999999999999999999983    7899999999999999999999999999


Q ss_pred             EEEEEecCCCCCCCCCC-CC-CCCCCCcEEEEEEEeceeeee
Q 013755          118 AVFTFTLPSELRFGVEG-RD-SLPPNSVVQFEVELVSWITVV  157 (437)
Q Consensus       118 ~~~~~~ip~~~ayg~~~-~~-~i~~~~~~~f~v~l~~~~~~~  157 (437)
                      ++|  .|||+++||..+ .+ .||++++++|+|+|+++....
T Consensus        86 ~~v--~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~  125 (135)
T 2d9f_A           86 AMV--TADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRP  125 (135)
T ss_dssp             EEE--EECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSC
T ss_pred             EEE--EEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCC
Confidence            999  999999999998 54 899999999999999986543

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.84  E-value=2.3e-20  Score=157.18  Aligned_cols=116  Identities=34%  Similarity=0.538  Sum_probs=102.4

Q ss_pred             eeccC--CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCC
Q 013755          156 VVDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (437)
Q Consensus       156 ~~d~~--~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~  233 (437)
                      ..|++  .|++++++++++|.|...|..++.|+|+|..                           ++.||++||++ +.+
T Consensus        26 ~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g---------------------------~~~dG~~fdss-~~~   77 (144)
T 3o5e_A           26 GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKG---------------------------KLSNGKKFDSS-HDR   77 (144)
T ss_dssp             CEECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEEEEE---------------------------ECTTSCEEEES-GGG
T ss_pred             cccccccCCCeEEEEEEECCCCCccCCCCCEEEEEEEE---------------------------EECCCCEEEee-ccc
Confidence            45566  7899999999999998889999998886544                           44567778877 777


Q ss_pred             CCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeec
Q 013755          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (437)
Q Consensus       234 ~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~  302 (437)
                      +.|+.|.+|.+.+++||+.+|.+|++||++.|.|||.++||..+.+.   .||++++|+|+|+|+++..
T Consensus        78 ~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ipp~~aYG~~g~~~---~Ipp~~~L~f~VeL~~ikg  143 (144)
T 3o5e_A           78 NEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLP---KIPSNATLFFEIELLDFKG  143 (144)
T ss_dssp             TSCEEEETTSSSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEEC
T ss_pred             CCCeEEEeCCCcccHHHHHHHhCCCCCCEEEEEEChHHCcCCCCCCC---CcCCCCeEEEEEEEEEecC
Confidence            89999999999999999999999999999999999999999998864   7999999999999999863

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.84  E-value=6.7e-21  Score=151.10  Aligned_cols=94  Identities=39%  Similarity=0.667  Sum_probs=89.2

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCC-CC
Q 013755           60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD-SL  138 (437)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~-~i  138 (437)
                      +.++.||.|+|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++|  .|||+++||..+.+ .|
T Consensus         4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v--~ip~~~ayG~~~~~~~I   81 (102)
T 2pbc_A            4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKL--VIPSELGYGERGAPPKI   81 (102)
T ss_dssp             CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEE--EECGGGTTTTTCBTTTB
T ss_pred             CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEE--EECHHHCcCCCCCCCCc
Confidence            7899999999999999889999999998778999999999999999999999999999999  99999999999876 79


Q ss_pred             CCCCcEEEEEEEeceee
Q 013755          139 PPNSVVQFEVELVSWIT  155 (437)
Q Consensus       139 ~~~~~~~f~v~l~~~~~  155 (437)
                      |++++++|+|+|.++..
T Consensus        82 p~~~~l~f~v~l~~v~~   98 (102)
T 2pbc_A           82 PGGATLVFEVELLKIER   98 (102)
T ss_dssp             CTTCCEEEEEEEEEEGG
T ss_pred             CcCCeEEEEEEEEEecc
Confidence            99999999999998864

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.83  E-value=8e-20  Score=159.36  Aligned_cols=127  Identities=28%  Similarity=0.501  Sum_probs=98.3

Q ss_pred             CccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEec-CccEEeecCCCCCCCeEEE
Q 013755          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE-DGTVFEKKGYDGEQPLEFI  240 (437)
Q Consensus       162 dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~-~g~~fd~~~~~~~~p~~f~  240 (437)
                      +.++.++++++|.|. .|..++.|+++|..+                           +. +|++|+++ |.++.|+.|.
T Consensus        48 ~~gl~~~vl~~G~G~-~~~~Gd~V~v~Y~g~---------------------------l~~dG~~fdss-~~~~~p~~f~   98 (180)
T 2f4e_A           48 DEKVSKQIIKEGHGS-KPSKYSTCFLHYRAW---------------------------TKNSQHKFEDT-WHEQQPIELV   98 (180)
T ss_dssp             ETTEEEEEEECCBSC-CBCTTCEEEEEEEEE---------------------------ETTTCCEEEET-TTTTCCEEEE
T ss_pred             CCceEEEEEeCCCCC-CCCCCCEEEEEEEEE---------------------------ECCCCcEEecc-CccCCCEEEE
Confidence            456899999999996 788888888866554                           43 47788888 7788999999


Q ss_pred             cCCC-CcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeecccC---CCCCChHHHHH
Q 013755          241 TDEE-QVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKV---PWEMNNQGKIE  316 (437)
Q Consensus       241 lg~~-~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~~~---~~~~~~~~~~~  316 (437)
                      +|.+ .+++||+.+|.+|++||++.|.||++++||..+.+. ...||++++|+|+|+|+++....+   .|+|+.++++.
T Consensus        99 lG~g~~vi~G~eeaL~gMk~Ge~~~v~iPp~~aYG~~g~~~-~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~  177 (180)
T 2f4e_A           99 LGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIG  177 (180)
T ss_dssp             TTSCCGGGHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBSS-SSCBCTTCCEEEEEEEEEESCBCCC-------------
T ss_pred             eCCCCchhHHHHHHHhCCCCCCEEEEEECchHhCCcCCccc-CCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHh
Confidence            9999 999999999999999999999999999999888631 126999999999999999998887   89999999987


Q ss_pred             HH
Q 013755          317 AA  318 (437)
Q Consensus       317 ~~  318 (437)
                      .+
T Consensus       178 ~A  179 (180)
T 2f4e_A          178 AA  179 (180)
T ss_dssp             --
T ss_pred             hc
Confidence            65

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.83  E-value=7.1e-20  Score=151.17  Aligned_cols=115  Identities=34%  Similarity=0.552  Sum_probs=100.9

Q ss_pred             eccC--CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCC
Q 013755          157 VDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGE  234 (437)
Q Consensus       157 ~d~~--~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~  234 (437)
                      +|+.  .|+++.++++++|.|...|..++.|+++|..                           ++.||++||++ +.++
T Consensus        11 ~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g---------------------------~~~dG~~fdss-~~~~   62 (128)
T 3o5q_A           11 EDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKG---------------------------KLSNGKKFDSS-HDRN   62 (128)
T ss_dssp             EECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEE---------------------------EETTSCEEEEH-HHHT
T ss_pred             ceecccCCCCEEEEEEECCCCCccCCCCCEEEEEEEE---------------------------EECCCCEEEec-CCCC
Confidence            3444  7899999999999998789999998886554                           44567778877 6678


Q ss_pred             CCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeec
Q 013755          235 QPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (437)
Q Consensus       235 ~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~  302 (437)
                      .|+.|.+|.+++++||+.+|.+|++||++.|.|||.++||..+...   .||++++|+|+|+|+++..
T Consensus        63 ~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~g~~~---~Ip~~~~l~f~vel~~i~~  127 (128)
T 3o5q_A           63 EPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLP---KIPSNATLFFEIELLDFKG  127 (128)
T ss_dssp             SCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEEC
T ss_pred             CCEEEEECCCCccHHHHHHHhcCCCCCEEEEEEChHHcCCCCCCCC---CcCCCCEEEEEEEEEEecC
Confidence            8999999999999999999999999999999999999999998764   7999999999999999864

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.82  E-value=2.9e-19  Score=145.83  Aligned_cols=110  Identities=35%  Similarity=0.504  Sum_probs=94.3

Q ss_pred             CccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCC-------CC
Q 013755          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYD-------GE  234 (437)
Q Consensus       162 dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~-------~~  234 (437)
                      +.++.++++++|+|...|..++.|+++|..++                           .||++||++ +.       .+
T Consensus         3 p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~---------------------------~dG~~fdss-~~~~~~~~~~~   54 (119)
T 3kz7_A            3 PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTL---------------------------PDGTVFDTN-IQTSSKKKKNA   54 (119)
T ss_dssp             SCSEEEEEEECCCSSCCCCTTCEEEEEEEEEC---------------------------TTSCEEEEC-CCCSSSTTTTC
T ss_pred             CCccEEEEEEcCCCCCcCCCCCEEEEEEEEEE---------------------------CCCCEEEec-cccccccccCC
Confidence            45789999999999888999999998766554                           455666666 43       25


Q ss_pred             CCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755          235 QPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (437)
Q Consensus       235 ~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~  301 (437)
                      .|+.|.+|.+.+++||+.+|.+|++||++.|.||++++||+.+.+.  ..||++++|+|+|+|++++
T Consensus        55 ~p~~f~lG~~~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~g~~~--~~Ip~~~~l~f~veL~~i~  119 (119)
T 3kz7_A           55 KPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD--AKIPPNTKLIFEVELVDID  119 (119)
T ss_dssp             CCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCTTCBGG--GTBCTTCCEEEEEEEEEEC
T ss_pred             CCEEEEECCCChhHHHHHHHhCCCCCCEEEEEECcHHhcCCCCCCC--CccCcCCeEEEEEEEEEeC
Confidence            8999999999999999999999999999999999999999988753  2599999999999999874

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.81  E-value=2e-19  Score=148.45  Aligned_cols=107  Identities=30%  Similarity=0.485  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      .+.++.++++|+.+|+.|+|++|+..|++|+++.|.+               ..+|+++|.||.++|++++|+.+|+++|
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al   74 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---------------AILYSNRAACLTKLMEFQRALDDCDTCI   74 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence            3568899999999999999999999999999998875               3779999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +++|+++.+|+++|.+|..+|++++|+.+|+++++++|+|++
T Consensus        75 ~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~  116 (126)
T 4gco_A           75 RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEE  116 (126)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHH
Confidence            999999999999999999999999999999999999999864

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.81  E-value=2.8e-19  Score=148.82  Aligned_cols=117  Identities=36%  Similarity=0.559  Sum_probs=101.6

Q ss_pred             eeccC--CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCC
Q 013755          156 VVDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (437)
Q Consensus       156 ~~d~~--~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~  233 (437)
                      +.|++  .++++.++++++|.|...|..++.|+++|..                           ++.||++||++ +.+
T Consensus         5 ~~dv~~~~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g---------------------------~~~dG~~fdss-~~~   56 (135)
T 1r9h_A            5 KIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVG---------------------------TLENGTKFDSS-RDR   56 (135)
T ss_dssp             CEECSTTCCSSEEEEEEECCBSSCCCCTTCEEEEEEEE---------------------------EETTSCEEEEH-HHH
T ss_pred             ceecccCCCCcEEEEEEEccCCCcCCCCCCEEEEEEEE---------------------------EECCCCEEEec-CcC
Confidence            44666  7899999999999998778889988886654                           44567778877 555


Q ss_pred             CCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeecc
Q 013755          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKE  303 (437)
Q Consensus       234 ~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~  303 (437)
                      +.|+.|.+|.+.+++||+.+|.+|++||++.|.|||+++||+.+.+.   .||++++++|+|+|+++...
T Consensus        57 ~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~g~~~---~Ip~~~~l~f~v~l~~i~~~  123 (135)
T 1r9h_A           57 GDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPP---KIPGGATLIFEVELFEWSAE  123 (135)
T ss_dssp             TSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEEC-
T ss_pred             CCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEChHHcCCCCCCCC---CcCcCCcEEEEEEEEEeecC
Confidence            78999999999999999999999999999999999999999988764   69999999999999999764

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.80  E-value=9.4e-19  Score=144.76  Aligned_cols=117  Identities=35%  Similarity=0.663  Sum_probs=99.7

Q ss_pred             eeccCCCccceEEEEecc-cc-CCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCC
Q 013755          156 VVDLSKDGGIVKKILEKG-ER-DASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (437)
Q Consensus       156 ~~d~~~dg~v~k~i~~~G-~g-~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~  233 (437)
                      ..+++.+|.++++++++| .| ...|..++.|+++|..++.                          .||++||++ +.+
T Consensus         9 ~~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~--------------------------~dG~~fd~s-~~~   61 (129)
T 2vn1_A            9 KVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLE--------------------------STGKVFDSS-FDR   61 (129)
T ss_dssp             EEECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEET--------------------------TTCCEEEEG-GGT
T ss_pred             CcEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEEC--------------------------CCCeEEEec-CCC
Confidence            446678899999999987 55 4678888888886655430                          467778887 667


Q ss_pred             CCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeec
Q 013755          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (437)
Q Consensus       234 ~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~  302 (437)
                      +.|+.|.+|.+.+++||+.+|.+|++||++.|.|||+++||..+.+.   .||++++++|+|+|+++.+
T Consensus        62 ~~p~~f~lG~g~~i~g~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~~~---~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           62 NVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGE---SIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             TCCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEEC
T ss_pred             CccEEEEeCCCCcCHHHHHHHhCCCCCCEEEEEEChHHcCCCCCCCC---CcCCCCeEEEEEEEEEEec
Confidence            78999999999999999999999999999999999999999988764   6999999999999999875

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.80  E-value=1.7e-19  Score=153.39  Aligned_cols=117  Identities=18%  Similarity=0.248  Sum_probs=91.7

Q ss_pred             CCccceEEEEeccccCCCC-CCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEec--CccEEeecCCCCCCCe
Q 013755          161 KDGGIVKKILEKGERDASP-GDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE--DGTVFEKKGYDGEQPL  237 (437)
Q Consensus       161 ~dg~v~k~i~~~G~g~~~p-~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~--~g~~fd~~~~~~~~p~  237 (437)
                      .+.++.|+|+++|.|..++ ..++.|++||                           +|++.  ||++|||| ++++.|+
T Consensus         8 ~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY---------------------------~g~l~d~~G~~FDsS-~~rg~P~   59 (165)
T 2lkn_A            8 REDGIQKRVIQEGRGELPDFQDGTKATFHY---------------------------RTLHSDDEGTVLDDS-RARGKPM   59 (165)
T ss_dssp             HTTSCCCCEEECCSSCCCCCCTTCEEEEEC---------------------------EEECSSSSCCEEEES-TTTTCCE
T ss_pred             cCCCeEEEEEECCcCCCCCCCCCCEEEEEE---------------------------EEEEeCCCccEEEec-ccCCCCE
Confidence            4567999999999996543 5678877755                           55553  48999999 8999999


Q ss_pred             EEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccc--------ccc----cc----------------------c
Q 013755          238 EFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE--------AKR----DL----------------------A  283 (437)
Q Consensus       238 ~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~--------~~~----~~----------------------~  283 (437)
                      +|.+|.+++|+||+.+|.+|++||++.|+|||+++||...        ...    ..                      .
T Consensus        60 ~f~lG~g~vI~Gwd~gl~~M~~Ge~~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~  139 (165)
T 2lkn_A           60 ELIIGKKFKLPVWETIVCTMREGEIAQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDA  139 (165)
T ss_dssp             EEESSSSCSCSHHHHHHTTCCTTCEEEEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTH
T ss_pred             EEEecCCCccHHHHHHHhcCccCceEEEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeecccccccccccccc
Confidence            9999999999999999999999999999999999999310        000    00                      0


Q ss_pred             cCCCCceEEEEEEEeeeecccC
Q 013755          284 TIPSCAKLYYEVEMMDFIKEKV  305 (437)
Q Consensus       284 ~ip~~~~l~~~vel~~~~~~~~  305 (437)
                      .++++++|+|+|||++++...+
T Consensus       140 li~~p~~L~FeIELl~Ve~P~e  161 (165)
T 2lkn_A          140 LQQNPQPLIFHMEMLKVESPGT  161 (165)
T ss_dssp             HHHSCCCCEEEEEEEEEECTTT
T ss_pred             ccCCCCCeEEEEEEEEEcCCcc
Confidence            1233467999999999987654

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.80  E-value=1.3e-18  Score=140.55  Aligned_cols=109  Identities=26%  Similarity=0.383  Sum_probs=94.7

Q ss_pred             CccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEEc
Q 013755          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFIT  241 (437)
Q Consensus       162 dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~l  241 (437)
                      +.++.++++++|.|...|..++.|+++|..                           ++.||++||++ +.++.|+.|.+
T Consensus         5 ~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~---------------------------~~~dG~~~d~s-~~~~~p~~f~l   56 (113)
T 1yat_A            5 EGNVKIDRISPGDGATFPKTGDLVTIHYTG---------------------------TLENGQKFDSS-VDRGSPFQCNI   56 (113)
T ss_dssp             GGGCEEEEEECCCSSCCCCTTCEEEEEEEE---------------------------EETTSCEEEES-TTTTCCEEEET
T ss_pred             CCCeEEEEEECCCCcccCCCCCEEEEEEEE---------------------------EECCCCEEEec-CCCCCcEEEEe
Confidence            346899999999997668888988886654                           44567778887 67678999999


Q ss_pred             CCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755          242 DEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (437)
Q Consensus       242 g~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~  301 (437)
                      |.+.+++||+.+|.+|++||++.|.+|+.++||..+.+.   .||++++++|+|+|+++.
T Consensus        57 G~~~~i~g~e~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~---~Ip~~~~l~f~vel~~ik  113 (113)
T 1yat_A           57 GVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPG---LIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             TSSSSCHHHHHHGGGCCTTCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEC
T ss_pred             CCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCC---CcCCCCeEEEEEEEEEeC
Confidence            999999999999999999999999999999999988764   699999999999999863

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.79  E-value=8.9e-19  Score=140.12  Aligned_cols=107  Identities=28%  Similarity=0.524  Sum_probs=92.6

Q ss_pred             cceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEEcCC
Q 013755          164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE  243 (437)
Q Consensus       164 ~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~  243 (437)
                      ++.++++++|+|...|..++.|+++|..+                           +.||++|+++ +.++.|+.|.+|.
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~---------------------------~~dG~~~d~s-~~~~~p~~f~lG~   52 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGM---------------------------LEDGKKFDSS-RDRNKPFKFMLGK   52 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEE---------------------------ETTSCEEEEH-HHHTSCEEEETTS
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEE---------------------------ECCCCEEEec-CCCCCCEEEEeCC
Confidence            46789999999976688999988866554                           4466777777 5556899999999


Q ss_pred             CCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755          244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (437)
Q Consensus       244 ~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~  301 (437)
                      +.+++||+.+|.+|++||++.|.+||+++||+.+.+.   .||++++++|+|+|++++
T Consensus        53 ~~~i~g~~~~l~gm~~Ge~~~~~ip~~~ayG~~~~~~---~Ip~~~~l~f~v~l~~v~  107 (107)
T 2ppn_A           53 QEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPG---IIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             CCSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEC
T ss_pred             CChHHHHHHHHhCCCCCCEEEEEECHHHccCCCCCCC---CcCCCCeEEEEEEEEEeC
Confidence            9999999999999999999999999999999988764   699999999999999863

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.79  E-value=2e-19  Score=153.71  Aligned_cols=125  Identities=22%  Similarity=0.375  Sum_probs=97.3

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCCC
Q 013755           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (437)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~~  140 (437)
                      .+++||.|+|||++++.||++|++|+..+.|+.|.+|.+++|+||+++|.+|++|++++|  .|||++|||+++..    
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v--~Ipp~~AYG~~~~~----   97 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTF--SLEPDAAFGVPSPD----   97 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEE--EECGGGTTCCCCGG----
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEE--EEChHHhcCCCChH----
Confidence            689999999999999999999999998778999999999999999999999999999999  99999999998643    


Q ss_pred             CCcEEEEEEEeceeee--------ecc-CCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeec
Q 013755          141 NSVVQFEVELVSWITV--------VDL-SKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (437)
Q Consensus       141 ~~~~~f~v~l~~~~~~--------~d~-~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~  201 (437)
                         ++..+....+...        ... ..+|..+.-++.+-       .++.|++|+||+|++.++.|+
T Consensus        98 ---lv~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~v-------~~~~V~vD~NHPLAGk~L~F~  157 (169)
T 4dt4_A           98 ---LIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREI-------NGDSITVDFNHPLAGQTVHFD  157 (169)
T ss_dssp             ---GEEEEEGGGGTTTCCCCTTCEEEEECTTSCEEEEEEEEE-------ETTEEEEECSCTTTTCCEEEE
T ss_pred             ---HEEEeCHHHCCCcCCCCCCcEEEEECCCCCEEEEEEEEE-------cCCEEEEeCCCccCCCEEEEE
Confidence               3444443332211        111 13343332222222       357999999999999998874

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.78  E-value=5.5e-19  Score=146.87  Aligned_cols=115  Identities=25%  Similarity=0.472  Sum_probs=91.4

Q ss_pred             eeccCCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCC
Q 013755          156 VVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQ  235 (437)
Q Consensus       156 ~~d~~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~  235 (437)
                      +.+++.++++.++++++|.|.. +..++.|+++|..++.+                          +|++||++ +.++.
T Consensus        19 ~~~v~~~~gl~~~vl~~G~g~~-~~~gd~V~v~Y~g~l~~--------------------------~G~~fdss-~~~~~   70 (134)
T 3b7x_A           19 MLDISGDRGVLKDVIREGAGDL-VAPDASVLVKYSGYLEH--------------------------MDRPFDSN-YFRKT   70 (134)
T ss_dssp             CEESSSSSSEEEEEEECCEEEE-CCTTCEEEEEEEEECTT--------------------------CSSCSEEC------
T ss_pred             cceeeCCCCEEEEEEEcCCCCC-CCCCCEEEEEEEEEECC--------------------------CCeEEEec-CCCCC
Confidence            4577889999999999999863 55678888766554431                          46677777 66678


Q ss_pred             CeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755          236 PLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (437)
Q Consensus       236 p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~  301 (437)
                      |+.|.+|.+.+++||+.+|.+|++||++.|.|||+++||..+.+.   .||++++|+|+|+|+++.
T Consensus        71 p~~f~lG~g~~i~G~e~aL~gm~~Ge~~~v~ip~~~aYG~~~~~~---~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           71 PRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPP---LIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             --CEEC-CCCCCHHHHHHHHTCEETCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEC
T ss_pred             CEEEEcCCcchhHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCC---CcCcCCeEEEEEEEEEEe
Confidence            999999999999999999999999999999999999999988765   699999999999999875

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.78  E-value=1.4e-18  Score=147.30  Aligned_cols=124  Identities=16%  Similarity=0.142  Sum_probs=107.2

Q ss_pred             ChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHH
Q 013755          310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL  389 (437)
Q Consensus       310 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~  389 (437)
                      .+-.....+..+++.|+.+|+.|+|++|+..|++||++.|..+...   ..........+|+|+|.|+.++|+|++|+.+
T Consensus         3 ~~~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~   79 (159)
T 2hr2_A            3 KPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFDHAGFDAFCHAGLAEALAGLRSFDEALHS   79 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---hhhhccchHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3444567889999999999999999999999999999999854321   0001122345899999999999999999999


Q ss_pred             HHHHHHh-------CCCCHHHH----HHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          390 CSKVLDC-------DCHNVKAL----YRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       390 ~~~al~~-------~p~~~~a~----~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      |++||++       +|++.++|    |++|.++..+|++++|+.+|++|++++|+++.
T Consensus        80 ~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           80 ADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             HHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence            9999999       99999999    99999999999999999999999999999875

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.78  E-value=2.1e-18  Score=145.80  Aligned_cols=124  Identities=22%  Similarity=0.344  Sum_probs=97.3

Q ss_pred             CCCCCCCEEEEEEEEEEc-CCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCC
Q 013755           60 DTPEFGDEVTIHYVGTLL-DGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSL  138 (437)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~-~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i  138 (437)
                      +.++.||.|+|||++++. +|++|++|+.. .|+.|.+|.+++++||+++|.+|++|++++|  .|||++|||.++.   
T Consensus         5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~-~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v--~ipp~~aYG~~~~---   78 (151)
T 2kr7_A            5 DLESIKQAALIEYEVREQGSSIVLDSNISK-EPLEFIIGTNQIIAGLEKAVLKAQIGEWEEV--VIAPEEAYGVYES---   78 (151)
T ss_dssp             CCTTSCCEEEEEEEEEESSCSCEEEESTTT-CCEEEETTCCCSCHHHHHHHTTCCBTCEEEE--EECGGGTTCSSCS---
T ss_pred             cCCCCCCEEEEEEEEEECCCCCEEEeCCCC-cCEEEEECCCCccHHHHHHHcCCCCCCEEEE--EEecHHHcCCCCc---
Confidence            578999999999999998 99999999874 8999999999999999999999999999999  9999999998764   


Q ss_pred             CCCCcEEEEEEEeceeeeecc---------CCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeec
Q 013755          139 PPNSVVQFEVELVSWITVVDL---------SKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (437)
Q Consensus       139 ~~~~~~~f~v~l~~~~~~~d~---------~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~  201 (437)
                          .+++.+....+ ....+         ..+|....-++.+-       .++.|++|+||++++.++.|+
T Consensus        79 ----~~v~~v~~~~f-~~~~~~~G~~~~~~~~~G~~~~~~V~~v-------~~~~v~vD~NHPLAG~~L~F~  138 (151)
T 2kr7_A           79 ----SYLQEVPRDQF-EGIELEKGMSVFGQTEDNQTIQAIIKDF-------SATHVMVDYNHPLAGKTLAFR  138 (151)
T ss_dssp             ----CEEEEEEGGGG-TTSCCCTTCEEEEEETTTEEEEEEEEEE-------CSSEEEEEECCTTSCCCEEEE
T ss_pred             ----ceEEEEcHHHc-CCCCCccCCEEEEECCCCCEEEEEEEEE-------CCCEEEEECCCcCCCCEEEEE
Confidence                35566655444 11111         12332222222222       458999999999999998885

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.78  E-value=1.9e-17  Score=147.81  Aligned_cols=198  Identities=20%  Similarity=0.223  Sum_probs=127.8

Q ss_pred             ccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhc---cccCCceEEEEEecCCCCCCC
Q 013755           55 NGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGII---TMKKRECAVFTFTLPSELRFG  131 (437)
Q Consensus        55 ~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~---~m~~G~~~~~~~~ip~~~ayg  131 (437)
                      .|+-.+.|..++.+.|...  . +|..          ..|.+....-+.-+-++..   ++... +.+|  .+-...-..
T Consensus         9 ~~~~~~~~~~~~~i~ikv~--~-~~~~----------v~~~i~~~~~l~kl~~~y~~~~g~~~~-~~~f--~fdG~~i~~   72 (209)
T 3uf8_A            9 SGEVKPEVKPETHINLKVS--D-GSSE----------IFFKIKKTTPLRRLMEAFAKRQGKEMD-SLRF--LYDGIRIQA   72 (209)
T ss_dssp             ---------CCSEEEEEEE--C-SSCE----------EEEEEETTSCTHHHHHHHHHHHTCCGG-GCEE--EETTEECCT
T ss_pred             CCcccceeCCCCcEEEEEE--c-CCCE----------EEEEEeeCCHHHHHHHHHHHhhCCChh-eEEE--EECCEeccC
Confidence            3443456777777776653  2 3332          3455544443333333332   33333 3344  444333333


Q ss_pred             CCCCCCCCCCCcEEEEEEEeceeeeeccCCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEE
Q 013755          132 VEGRDSLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYL  211 (437)
Q Consensus       132 ~~~~~~i~~~~~~~f~v~l~~~~~~~d~~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~  211 (437)
                      ...+..+.....-..++-+....-....+.+.++.++++++|.|. .|..++.|+++|.                     
T Consensus        73 ~~Tpk~L~~ed~d~I~~~~eq~Gg~t~~~~~sGl~~~vl~~G~G~-~~~~gd~V~v~Y~---------------------  130 (209)
T 3uf8_A           73 DQTPEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSGA-EARAGQTVSVHYT---------------------  130 (209)
T ss_dssp             TCCTTTTTCCTTEEEEEECSCTTCCCCEECTTSCEEEEEECCCSC-BCCTTCEEEEEEE---------------------
T ss_pred             CCChHHhhhcccccchhhccccccccccCCCCceEEEEEEcCCCC-cCCCCCEEEEEEE---------------------
Confidence            333332322233333443333322234456778999999999985 4888888887554                     


Q ss_pred             EEEEEEEEecCccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceE
Q 013755          212 KDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKL  291 (437)
Q Consensus       212 ~~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l  291 (437)
                            +++.||++||++ +.++.|+.|.+|.+.+++||+.+|.+|++||++.|.|||.++||+.+...   .||++++|
T Consensus       131 ------g~l~dG~~fdss-~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v~Ipp~~aYG~~g~~~---~IP~~s~L  200 (209)
T 3uf8_A          131 ------GWLTDGQKFDSS-KDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAG---VIPPNATL  200 (209)
T ss_dssp             ------EEETTSCEEEES-GGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTTTTCBTT---TBCTTCCE
T ss_pred             ------EEECCCCEEEEc-cccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEEEECcHHhCCCCCCCC---CcCCCCeE
Confidence                  455577788887 77789999999999999999999999999999999999999999998765   69999999


Q ss_pred             EEEEEEeee
Q 013755          292 YYEVEMMDF  300 (437)
Q Consensus       292 ~~~vel~~~  300 (437)
                      +|+|+|+++
T Consensus       201 vF~VeL~~I  209 (209)
T 3uf8_A          201 VFEVELLDV  209 (209)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEC
Confidence            999999874

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.77  E-value=3.9e-18  Score=138.70  Aligned_cols=112  Identities=29%  Similarity=0.363  Sum_probs=96.8

Q ss_pred             eeeccCCCccceEEEEeccccC-CCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCC
Q 013755          155 TVVDLSKDGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (437)
Q Consensus       155 ~~~d~~~dg~v~k~i~~~G~g~-~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~  233 (437)
                      .+.+++++|.+.++++++|.|. ..|..++.|+++|..++                           .||++|+++    
T Consensus         5 ~~~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~---------------------------~dG~~~ds~----   53 (118)
T 2awg_A            5 EWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSL---------------------------ENGTRVQEE----   53 (118)
T ss_dssp             CEEESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEEC---------------------------TTSCEEEEE----
T ss_pred             cceEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEE---------------------------CCCCEEECC----
Confidence            3567889999999999999985 47888999888766554                           355666653    


Q ss_pred             CCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (437)
Q Consensus       234 ~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~  301 (437)
                       .|+.|.+|.+.+++||+.+|.+|++||++.|.+|++++||..+.+.   .||++++++|+|+|+++.
T Consensus        54 -~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~~~ip~~~ayG~~~~~~---~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           54 -PELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSP---YIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             -EEEEEETTSSCSCHHHHHHGGGSCTTCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEE
T ss_pred             -CCEEEEECCCChhHHHHHHHhCCCCCCEEEEEEChHHccCCCCCCC---ccCCCCeEEEEEEEEEec
Confidence             6999999999999999999999999999999999999999988764   699999999999999875

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.77  E-value=3.6e-18  Score=146.57  Aligned_cols=120  Identities=23%  Similarity=0.358  Sum_probs=100.2

Q ss_pred             CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (437)
Q Consensus       161 ~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~  240 (437)
                      .+.++.++++++|.|...|..++.|+|+|.                           +++.||++||++ +.++.|+.|.
T Consensus        35 ~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~---------------------------g~l~dG~~fdss-~~~g~p~~f~   86 (167)
T 1jvw_A           35 LPSGLVFQRIARGSGKRAPAIDDKCEVHYT---------------------------GRLRDGTVFDSS-RERGKPTTFR   86 (167)
T ss_dssp             CTTSCEEEEEECCCCSBCCCTTCCEEEEEE---------------------------EECTTSCEEEEH-HHHTSCEEEC
T ss_pred             CCCCEEEEEEEcCCCCcCCCCCCEEEEEEE---------------------------EEECCCCEEeec-cccCCCEEEE
Confidence            456789999999999766888888887554                           455567788887 6667899999


Q ss_pred             cCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeecccCCCCCChHHHH
Q 013755          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKI  315 (437)
Q Consensus       241 lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~~~~~~~~  315 (437)
                      +  +.+++||+.+|.+|++||++.|.|||+++||..+.+.   .|||+++|+|+|+|+++.+.  .|.++.++..
T Consensus        87 l--g~vI~G~eeaL~gMk~Ge~~~~~Ip~~laYG~~g~~~---~Ipp~s~LiF~VeL~~i~~~--~~~~~~~e~~  154 (167)
T 1jvw_A           87 P--NEVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGG---MIPPYSPLEFDVELISIKDG--GKGRTAEEVD  154 (167)
T ss_dssp             G--GGSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCSSS---SSCTTCCEEEEEEEEEEGGG--CCSCBHHHHH
T ss_pred             e--CchhHHHHHHHcCCCCCCEEEEEECchhhCCCCCCCC---CcCCCCeEEEEEEEEEEEcC--CCCCCHHHHH
Confidence            9  4899999999999999999999999999999988764   69999999999999999854  4556665543

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.77  E-value=4.3e-18  Score=140.52  Aligned_cols=104  Identities=31%  Similarity=0.458  Sum_probs=90.4

Q ss_pred             eEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEEcCCCC
Q 013755          166 VKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQ  245 (437)
Q Consensus       166 ~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~  245 (437)
                      .|+++++|.|...|..+|.|+++|..+                           +.||++||++ +.++.|+.|.+|.+.
T Consensus        27 ~K~~l~~G~G~~~~~~gd~V~v~Y~g~---------------------------~~dG~~fdss-~~~~~p~~f~lG~g~   78 (130)
T 2lgo_A           27 EKKVLTPGDGVTKPQAGKKVTVHYDGR---------------------------FPDGKQFDSS-RSRGKPFQFTLGAGE   78 (130)
T ss_dssp             CEEEEECCCSSCCCCTTSEEEEEEEEE---------------------------CTTSCEEECT-TTTTCCEEEETTSTT
T ss_pred             EEEEEeccCCCccCCCCCEEEEEEEEE---------------------------ECCCCEEEcc-CcCCCCEEEEeCCCC
Confidence            345999999986688999988866554                           4466778877 677789999999999


Q ss_pred             cchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeee
Q 013755          246 VIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF  300 (437)
Q Consensus       246 ~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~  300 (437)
                      +++||+.+|.+|++||++.|.|||.++||+.+.+.   .||++++++|+|+|+++
T Consensus        79 vi~G~e~aL~gm~~Ge~~~v~ip~~~aYG~~~~~~---~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           79 VIKGWDQGVATMTLGEKALFTIPYQLAYGERGYPP---VIPPKATLVFEVELLAV  130 (130)
T ss_dssp             SCHHHHHHHHHSCTTEEEEEEECTTTSTTTTCCST---TSCSSCCEEEEEEEEEC
T ss_pred             ccHHHHHHHhCCCCCCEEEEEECcHHHCCCCCCCC---CcCCCCeEEEEEEEEEC
Confidence            99999999999999999999999999999988764   69999999999999874

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.77  E-value=6.2e-18  Score=140.06  Aligned_cols=108  Identities=31%  Similarity=0.443  Sum_probs=94.0

Q ss_pred             CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (437)
Q Consensus       161 ~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~  240 (437)
                      .+.++.++++++|.| ..|..+|.|+++|..                           ++.||++||++ ++++.|+.|.
T Consensus        26 ~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g---------------------------~~~dG~~fdss-~~~~~p~~f~   76 (133)
T 2y78_A           26 TESGLKYEDLTEGSG-AEARAGQTVSVHYTG---------------------------WLTDGQKFDSS-KDRNDPFAFV   76 (133)
T ss_dssp             CTTSCEEEEEECCSS-CBCCTTSEEEEEEEE---------------------------EETTSCEEEET-TTTTCCEEEE
T ss_pred             CCCCEEEEEEEcCCC-CCCCCCCEEEEEEEE---------------------------EECCCCEEecc-CcCCCCEEEE
Confidence            566789999999998 468888888886654                           44567788887 7778899999


Q ss_pred             cCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeee
Q 013755          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF  300 (437)
Q Consensus       241 lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~  300 (437)
                      +|.+.+++||+.+|.+|++||++.|.||+.++||..+...   .|||+++++|+|+|+++
T Consensus        77 lG~g~vi~G~eeaL~gmk~Ge~~~v~ip~~~aYG~~~~~~---~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A           77 LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGG---VIPPNATLVFEVELLDV  133 (133)
T ss_dssp             TTSSSSCHHHHHHSTTCBTTCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEC
T ss_pred             eCCCChhHHHHHHHcCCCCCCEEEEEECcHHhCCCCCCCC---CCCCCCeEEEEEEEEEC
Confidence            9999999999999999999999999999999999988764   69999999999999874

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.77  E-value=3.8e-18  Score=146.58  Aligned_cols=125  Identities=26%  Similarity=0.326  Sum_probs=110.1

Q ss_pred             hHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccC---CCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHH
Q 013755          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED---GSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAI  387 (437)
Q Consensus       311 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~---~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai  387 (437)
                      .+++++.+..++..|+.+|+.|+|++|+..|.+|+.+.+..   ....++++.........+|+|+|.||+++|+|++|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            35677899999999999999999999999999999985432   122345566667788899999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          388 ELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       388 ~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .+|+++|+++|+++++|+++|.+|..+|+|++|+.+|+++++++|+|+
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            999999999999999999999999999999999999999999999885

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.76  E-value=5.9e-18  Score=143.54  Aligned_cols=114  Identities=29%  Similarity=0.357  Sum_probs=96.9

Q ss_pred             eeccCCCccceEEEEeccccC-CCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCC
Q 013755          156 VVDLSKDGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGE  234 (437)
Q Consensus       156 ~~d~~~dg~v~k~i~~~G~g~-~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~  234 (437)
                      +.+.+++|.+.++++++|+|. ..|..+|.|+++|..                           ++.||++||++     
T Consensus        36 ~~~~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g---------------------------~l~dG~~fds~-----   83 (157)
T 2jwx_A           36 WLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQT---------------------------SLENGTRVQEE-----   83 (157)
T ss_dssp             CEESSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEE---------------------------ECTTSCEEEEE-----
T ss_pred             cceECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEE---------------------------EECCCCEeecC-----
Confidence            445678888889999999984 578888888876654                           44466677764     


Q ss_pred             CCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccc-cccccccCCCCceEEEEEEEeeeeccc
Q 013755          235 QPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE-AKRDLATIPSCAKLYYEVEMMDFIKEK  304 (437)
Q Consensus       235 ~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~-~~~~~~~ip~~~~l~~~vel~~~~~~~  304 (437)
                      .|+.|.+|.+.+++||+.+|.+|++||++.|.||++++||..+ ...   .||++++|+|+|+|+++....
T Consensus        84 ~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~~v~IP~~~aYG~~g~~~~---~IPp~stLiF~VeL~~i~~~~  151 (157)
T 2jwx_A           84 PELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSP---YIPPHAALCLEVTLKTAVDLE  151 (157)
T ss_dssp             EEEEEETTTTSSCHHHHHHTTTSCTTCEEEEEECGGGTTTTTCCSSS---CCCTTCCEEEEEEEEEEEECS
T ss_pred             CCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEECchhcCCcccccCC---CcCCCCeEEEEEEEEEEEccc
Confidence            6999999999999999999999999999999999999999988 543   699999999999999997654

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.75  E-value=5.3e-19  Score=149.69  Aligned_cols=122  Identities=30%  Similarity=0.419  Sum_probs=91.9

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccCC-------------CCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCC
Q 013755           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDR-------------YDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSE  127 (437)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~G~~~~st~~~-------------~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~  127 (437)
                      .+++||.|+|||++++ ||++|+||+..             +.|+.|.+|.+++|+||+++|.+|++|++++|  .|||+
T Consensus         1 ~i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v--~Ipp~   77 (157)
T 3pr9_A            1 MVEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREV--VLPPE   77 (157)
T ss_dssp             CCCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEE--EECGG
T ss_pred             CCCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEE--EECcH
Confidence            3689999999999999 99999999862             37999999999999999999999999999999  99999


Q ss_pred             CCCCCCCCCCCCCCCcEEEEEEEeceeeeeccC-CCccc------eEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeee
Q 013755          128 LRFGVEGRDSLPPNSVVQFEVELVSWITVVDLS-KDGGI------VKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVA  200 (437)
Q Consensus       128 ~ayg~~~~~~i~~~~~~~f~v~l~~~~~~~d~~-~dg~v------~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~  200 (437)
                      +|||+++..       ++..+....+... ++. ..|..      .-+|+.-        .++.|++|+||++++.++.|
T Consensus        78 ~aYG~~~~~-------~V~~v~~~~f~~~-~~~~~~G~~~~~~~~~~~V~~v--------~~~~V~vD~NHPLAG~~L~F  141 (157)
T 3pr9_A           78 KAFGKRDPS-------KIKLIPLSEFTKR-GIKPIKGLTITIDGIPGKIVSI--------NSGRVLVDFNHELAGKEVKY  141 (157)
T ss_dssp             GTTCCCCGG-------GEEEEEHHHHHHT-TCCCCTTCEEEETTEEEEEEEE--------ETTEEEEECSCTTTTCCEEE
T ss_pred             HhcCCCChH-------hEEEcCHHHCCcc-cCCcCCCcEEEecCCCeEEEEE--------cCCEEEEECCCccCCCeEEE
Confidence            999998754       3333332222110 000 01111      1122211        35799999999999999888


Q ss_pred             c
Q 013755          201 K  201 (437)
Q Consensus       201 ~  201 (437)
                      +
T Consensus       142 ~  142 (157)
T 3pr9_A          142 R  142 (157)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=4.1e-18  Score=141.77  Aligned_cols=120  Identities=28%  Similarity=0.305  Sum_probs=101.2

Q ss_pred             eeccCCCccceEEEEeccccC-CCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCC
Q 013755          156 VVDLSKDGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGE  234 (437)
Q Consensus       156 ~~d~~~dg~v~k~i~~~G~g~-~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~  234 (437)
                      +.+++++|.+.++++++|.|. ..|..++.|+++|..+                           +.||++|++.     
T Consensus        10 ~~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~---------------------------~~dG~~fds~-----   57 (135)
T 2d9f_A           10 WLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTS---------------------------LENGTRVQEE-----   57 (135)
T ss_dssp             CEESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEE---------------------------ESSSCEEEEE-----
T ss_pred             CcEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEE---------------------------ECCCCEEecC-----
Confidence            567788999999999999984 5788889888866554                           4456666653     


Q ss_pred             CCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccc-cccccccCCCCceEEEEEEEeeeecccCCCCCC
Q 013755          235 QPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE-AKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMN  310 (437)
Q Consensus       235 ~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~-~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~~~  310 (437)
                      .|+.|.+|.+.+++||+.+|.+|++||++.|.+|++++||..+ ...   .||++++++|+|+|+++....+...++
T Consensus        58 ~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~~v~ip~~~aYG~~~~~~~---~Ip~~~~l~f~vel~~v~~~~~~e~~s  131 (135)
T 2d9f_A           58 PELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSP---YIPPHAALCLEVTLKTAVDRPDLEMSG  131 (135)
T ss_dssp             EEEEEETTSCCSCTTTTTTGGGSCTTCEEEEEECHHHHTCTTCCSSS---CCCTTCCEEEEEEEEEEESSCSSSSCC
T ss_pred             CCEEEEeCCCChhHHHHHHHhCCCCCCEEEEEEChhHccCcCCcCCC---ccCCCCeEEEEEEEEEeecCCchhhcC
Confidence            6999999999999999999999999999999999999999887 443   699999999999999998866554444

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.75  E-value=1.9e-17  Score=136.12  Aligned_cols=113  Identities=22%  Similarity=0.327  Sum_probs=95.6

Q ss_pred             cCCCccceEEEEecccc-CCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEec-CccEEeecCCC--CC
Q 013755          159 LSKDGGIVKKILEKGER-DASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE-DGTVFEKKGYD--GE  234 (437)
Q Consensus       159 ~~~dg~v~k~i~~~G~g-~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~-~g~~fd~~~~~--~~  234 (437)
                      ...+.++.++++++|.+ ...|..++.|+++|..                           ++. ||++||++ +.  .+
T Consensus         8 ~~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g---------------------------~~~~dG~~fdss-~~~~~~   59 (125)
T 4dip_A            8 LIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEG---------------------------YLEKDGSLFHST-HKHNNG   59 (125)
T ss_dssp             GCCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEE---------------------------EETTTCCEEEEH-HHHTTT
T ss_pred             EECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEE---------------------------EECCCCcEEEEc-ccCCCC
Confidence            44667889999999983 3578888888876555                           444 66777776 53  46


Q ss_pred             CCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeecc
Q 013755          235 QPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKE  303 (437)
Q Consensus       235 ~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~  303 (437)
                      .|+.|.+|.+.+++||+.+|.+|++||++.|.||++++||+.+..    .||++++|+|+|+|+++.+.
T Consensus        60 ~p~~f~lG~~~~i~G~e~~l~gm~~Ge~~~~~ip~~~aYG~~g~~----~Ip~~~~l~f~vel~~i~~~  124 (125)
T 4dip_A           60 QPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGKG----KIPPESTLIFNIDLLEIRNG  124 (125)
T ss_dssp             CCEEEETTSCSSCHHHHHHSTTCCTTCEEEEEECGGGTTTTTCBT----TBCTTCCEEEEEEEEEEECC
T ss_pred             cCEEEEeCCCChhHHHHHHHhCCCCCCEEEEEEChHHhcCCCCCC----CCCCCCeEEEEEEEEEEEcC
Confidence            899999999999999999999999999999999999999998855    59999999999999998754

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.75  E-value=9.5e-19  Score=153.38  Aligned_cols=130  Identities=16%  Similarity=0.173  Sum_probs=94.1

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCCC
Q 013755           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (437)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~~  140 (437)
                      ++++||+|+|+|++++.||++|+||+.. .|+.|.+|.+++||||+++|.+|++|++++|  .|||++|||+++..    
T Consensus         2 ~i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v--~Ippe~aYGe~~~~----   74 (196)
T 2kfw_A            2 KVAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDV--AVGANDAYGQYDEN----   74 (196)
T ss_dssp             CCCSSCEEEEEEEEEETTTEEEEECCTT-SCCEEESSSSSSCHHHHHHHSSSCTTCEEEE--ECSTTTTSSCCCTT----
T ss_pred             CCCCCCEEEEEEEEEECCCCEEEecCCC-CCEEEEECCCCcchHHHHHHcCCCCCCEEEE--EeCcHHhcCCCChh----
Confidence            3789999999999998899999999875 8999999999999999999999999999999  99999999998754    


Q ss_pred             CCcEEEEEEEeceeeeeccCCCccceEEEEecc--ccCCCCCCCCeEEEEEEEEcCCCeeeec
Q 013755          141 NSVVQFEVELVSWITVVDLSKDGGIVKKILEKG--ERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (437)
Q Consensus       141 ~~~~~f~v~l~~~~~~~d~~~dg~v~k~i~~~G--~g~~~p~~~~~V~v~~~~~~~~g~~v~~  201 (437)
                         +++.|....+..... ...|..+......|  .+...-...+.|++|+||+|++.++.|+
T Consensus        75 ---lV~~vp~~~f~~~~~-~~~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~  133 (196)
T 2kfw_A           75 ---LVQRVPKDVFMGVDE-LQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFN  133 (196)
T ss_dssp             ---TCEEECGGGCCCSSC-CCTTCEEEEEETTEEEEEEBCCCCSSSEEECCCCTTSCCCCEEE
T ss_pred             ---hEEEEEHHHCCCccC-cccCCEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEE
Confidence               233333322211000 11111111100000  0011223568999999999999998874

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.74  E-value=4.8e-19  Score=149.80  Aligned_cols=123  Identities=22%  Similarity=0.426  Sum_probs=93.1

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccC-------------CCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCC
Q 013755           61 TPEFGDEVTIHYVGTLLDGTKFDSTRD-------------RYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSE  127 (437)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~G~~~~st~~-------------~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~  127 (437)
                      .++.||.|+|||++++.||++|+||+.             ...|+.|.+|.+++++||+++|.+|++|++++|  .|||+
T Consensus         1 ~i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v--~ipp~   78 (151)
T 1ix5_A            1 MVDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTV--KIPAE   78 (151)
T ss_dssp             CCCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEE--EECTT
T ss_pred             CCCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEE--EECcH
Confidence            478999999999999889999999973             337999999999999999999999999999999  99999


Q ss_pred             CCCCCCCCCCCCCCCcEEEEEEEeceee-------eeccCCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeee
Q 013755          128 LRFGVEGRDSLPPNSVVQFEVELVSWIT-------VVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVA  200 (437)
Q Consensus       128 ~ayg~~~~~~i~~~~~~~f~v~l~~~~~-------~~d~~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~  200 (437)
                      +|||+++...       ++.+.+..+..       ...+.-.+ ..-+|+.-        .++.|++|+||++++.++.|
T Consensus        79 ~aYG~~~~~~-------v~~v~~~~f~~~~~~~~~G~~~~~~~-~~~~V~~v--------~~~~v~vD~NHPLAG~~L~F  142 (151)
T 1ix5_A           79 KAYGNRNEML-------IQKIPRDAFKEADFEPEEGMVILAEG-IPATITEV--------TDNEVTLDFNHELAGKDLVF  142 (151)
T ss_dssp             TSSCSCCSTT-------BCCEETHHHHTSTTCCCTTEEEESSS-CEEEEEEE--------ETTEEEEECCCSSTTCCEEE
T ss_pred             HHCCCCCccE-------EEEEEHHHcCccCCcccccCEEEECC-eEEEEEEE--------cCCEEEEeCCCCCCCCeEEE
Confidence            9999987553       33333333311       00000111 11122222        35799999999999999888


Q ss_pred             c
Q 013755          201 K  201 (437)
Q Consensus       201 ~  201 (437)
                      +
T Consensus       143 ~  143 (151)
T 1ix5_A          143 T  143 (151)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.74  E-value=1.2e-17  Score=143.66  Aligned_cols=123  Identities=18%  Similarity=0.221  Sum_probs=94.5

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCCC
Q 013755           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (437)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~~  140 (437)
                      +++.||.|+|+|++++.+|++|+||+.. .|+.|.+|.++++|||+++|.+|++|++++|  .|||++|||+++..    
T Consensus         2 ~i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v--~ippe~aYG~~~~~----   74 (171)
T 2k8i_A            2 KVAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDV--AVGANDAYGQYDEN----   74 (171)
T ss_dssp             CCCTTEEEEEEEEEEETTSCEEEECCSS-SCEEEETTSCSSCSHHHHHHTTCCTTCEEEE--EEETTTSSCCCCTT----
T ss_pred             cCCCCCEEEEEEEEEECCCCEEeeccCC-cCEEEEECCCCcchHHHHHHcCCCCCCEEEE--EECcHHhcCCCChh----
Confidence            3789999999999998899999999875 8999999999999999999999999999999  99999999998644    


Q ss_pred             CCcEEEEEEEeceeeeecc---------CCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeec
Q 013755          141 NSVVQFEVELVSWITVVDL---------SKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (437)
Q Consensus       141 ~~~~~f~v~l~~~~~~~d~---------~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~  201 (437)
                         +++.+....+.....+         ..+|.+.-+|+.-        ..+.|++|+||+|++.++.|+
T Consensus        75 ---~v~~v~~~~f~~~~~~~~G~~~~~~~~~G~~~~~V~~v--------~~~~V~vD~NHPLAGk~L~F~  133 (171)
T 2k8i_A           75 ---LVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAV--------EDDHVVVDGNHMLAGQNLKFN  133 (171)
T ss_dssp             ---SEEEEEGGGGTTSSCCCTTCEEEEEETTEEEEEEEEEE--------CSSEEEEESCCSSCCCEEEEE
T ss_pred             ---hEEEeeHHHCCcccCccCCcEEEEECCCCcEEEEEEEE--------cCCEEEEeCCCCCCCCeEEEE
Confidence               3444443333211001         1223211122222        358999999999999998885

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.73  E-value=1.5e-16  Score=141.20  Aligned_cols=145  Identities=33%  Similarity=0.364  Sum_probs=121.4

Q ss_pred             EEEEEEEeeeecccCCCCCChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChH-HHHHHHhhhHHH
Q 013755          291 LYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDD-EQKLVKSLRVSC  369 (437)
Q Consensus       291 l~~~vel~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~-~~~~~~~~~~~~  369 (437)
                      ......+..+++..+.|+++.+++...+..++..|+.++..|+|++|+..|++++.+.|..+..... .......+...+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~   90 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC   90 (198)
T ss_dssp             -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence            3445567788899999999999999999999999999999999999999999999998876544322 222334455688


Q ss_pred             hhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++++|.||+++++|++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++.
T Consensus        91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  156 (198)
T 2fbn_A           91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL  156 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence            999999999999999999999999999999999999999999999999999999999999999875

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=99.72  E-value=7.9e-17  Score=150.54  Aligned_cols=117  Identities=35%  Similarity=0.499  Sum_probs=102.4

Q ss_pred             eeccC--CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCC
Q 013755          156 VVDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDG  233 (437)
Q Consensus       156 ~~d~~--~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~  233 (437)
                      +.+++  .++++.++++++|.|...|..++.|+++|..                           ++.||++||++ +.+
T Consensus        42 ~~di~~~~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g---------------------------~~~dG~~fdss-~~~   93 (280)
T 1q1c_A           42 GVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTG---------------------------WLLDGTKFDSS-LDR   93 (280)
T ss_dssp             CEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEE---------------------------EETTSCEEEES-TTS
T ss_pred             ccccccCCCCceEEEEEeCCCCCcCCCCCCEEEEEEEE---------------------------EECCCCEEEec-ccC
Confidence            34566  7899999999999998779999998886654                           44567788887 677


Q ss_pred             CCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeecc
Q 013755          234 EQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKE  303 (437)
Q Consensus       234 ~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~  303 (437)
                      +.|+.|.+|.+.+++||+.+|.+|++||++.|.|||+++||..+.+.   .||++++++|+|+|+.+...
T Consensus        94 ~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ipp~~aYG~~g~~~---~Ip~~~~lvf~Vel~~i~~~  160 (280)
T 1q1c_A           94 KDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPP---KIPPNATLVFEVELFEFKGE  160 (280)
T ss_dssp             SSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEECE
T ss_pred             CCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEECcHHhCCCcCccC---CCCCCCcEEEEEEeeeeccc
Confidence            78999999999999999999999999999999999999999988764   69999999999999998753

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.72  E-value=4.4e-18  Score=152.49  Aligned_cols=122  Identities=30%  Similarity=0.419  Sum_probs=91.5

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccCC-------------CCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCC
Q 013755           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDR-------------YDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSE  127 (437)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~G~~~~st~~~-------------~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~  127 (437)
                      .++.||.|+|||++++ ||++|+||+..             +.|+.|.+|.+++|+||+++|.+|++|++++|  .|||+
T Consensus         1 ~i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v--~Ippe   77 (231)
T 3prb_A            1 MVEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREV--VLPPE   77 (231)
T ss_dssp             CCCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEE--EECGG
T ss_pred             CCCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEE--EeCcH
Confidence            3689999999999999 99999999852             47999999999999999999999999999999  99999


Q ss_pred             CCCCCCCCCCCCCCCcEEEEEEEeceeeeeccC-CCccc------eEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeee
Q 013755          128 LRFGVEGRDSLPPNSVVQFEVELVSWITVVDLS-KDGGI------VKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVA  200 (437)
Q Consensus       128 ~ayg~~~~~~i~~~~~~~f~v~l~~~~~~~d~~-~dg~v------~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~  200 (437)
                      +|||+++..       ++..+....+.. .++. ..|..      .-+|+.-        .++.|++|+||+|+|.++.|
T Consensus        78 ~AYGe~~~~-------lv~~vp~~~f~~-~~~~~~vG~~~~~~~~~g~V~~v--------~~~~V~vD~NHPLAGk~L~F  141 (231)
T 3prb_A           78 KAFGKRDPS-------KIKLIPLSEFTK-RGIKPIKGLTITIDGIPGKIVSI--------NSGRVLVDFNHELAGKEVKY  141 (231)
T ss_dssp             GTTCCCCGG-------GEEEEETHHHHT-TTCCCCTTCEEEETTEEEEEEEE--------ETTEEEEECSCTTTTCCEEE
T ss_pred             HhcCCCChH-------HEEecCHHHCCc-ccCCCCCCcEEEecCCCEEEEEE--------cCCEEEEeCCCccCCCEEEE
Confidence            999998754       333333222211 0000 00110      1122221        35799999999999999887


Q ss_pred             c
Q 013755          201 K  201 (437)
Q Consensus       201 ~  201 (437)
                      +
T Consensus       142 ~  142 (231)
T 3prb_A          142 R  142 (231)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.72  E-value=6.6e-17  Score=143.85  Aligned_cols=104  Identities=27%  Similarity=0.417  Sum_probs=90.9

Q ss_pred             CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (437)
Q Consensus       161 ~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~  240 (437)
                      .+.++.++++++|+|. .|..++.|+|+|                           ++++.||++||++    +.|++|.
T Consensus       115 ~~sGl~y~vl~~G~G~-~p~~gd~V~V~Y---------------------------~g~l~dG~vfDss----~~P~~f~  162 (219)
T 3oe2_A          115 LADGILMTELTPGTGP-KPDANGRVEVRY---------------------------VGRLPDGKIFDQS----TQPQWFR  162 (219)
T ss_dssp             CGGGCEEEEEECCCSC-CCCTTSEEEEEE---------------------------EEECTTSCEEEEC----SSCEEEE
T ss_pred             CCCCeEEEEEecCCCc-cCCCCCEEEEEE---------------------------EEEECCCCEeecc----CCcEEEE
Confidence            4667899999999984 688888888755                           5555677788876    6899999


Q ss_pred             cCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (437)
Q Consensus       241 lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~  301 (437)
                      +|  .+|+||+.+|.+|++|+++.|+|||+++||+.+.+.   .|||+++|+|+|+|+++.
T Consensus       163 lG--~vI~G~eeaL~gMk~Gek~~v~IPp~lAYG~~g~~~---~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          163 LD--SVISGWTSALQNMPTGAKWRLVIPSDQAYGAEGAGD---LIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             GG--GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEE
T ss_pred             ec--chhHHHHHHHhCCCCCCEEEEEECchhcCCCCCCCC---CCCCCCeEEEEEEEEEEe
Confidence            97  899999999999999999999999999999998864   699999999999999985

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.70  E-value=9.8e-17  Score=142.92  Aligned_cols=108  Identities=25%  Similarity=0.409  Sum_probs=93.2

Q ss_pred             CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (437)
Q Consensus       161 ~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~  240 (437)
                      .+.++.++++++|+| ..|..++.|+|+|                           ++++.||++||++ +.++.|++|.
T Consensus       104 ~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y---------------------------~g~l~dG~vfdss-~~~g~p~~f~  154 (213)
T 1fd9_A          104 LPSGLQYKVINSGNG-VKPGKSDTVTVEY---------------------------TGRLIDGTVFDST-EKTGKPATFQ  154 (213)
T ss_dssp             CTTSCEEEEEECCCS-CCCCTTCEEEEEE---------------------------EEEETTSCEEEEH-HHHCSCEEEE
T ss_pred             CCCccEEEEEecCCC-ccCCCCCEEEEEE---------------------------EEEECCCCEEeec-cccCCCEEEE
Confidence            456789999999998 4788888888755                           5555677888887 6667899999


Q ss_pred             cCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeec
Q 013755          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (437)
Q Consensus       241 lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~  302 (437)
                      +  +.+++||+.+|.+|++||++.|.||++++||..+.+.   .|||+++|+|+|+|+++.+
T Consensus       155 l--g~vI~G~eeaL~gMk~Gek~~v~IP~~laYG~~g~~~---~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          155 V--SQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGG---PIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             G--GGSCHHHHHHHTTCCTTCEEEEEECGGGTTTTCCCSS---SCCTTCCEEEEEEEEEEEC
T ss_pred             c--CchhhHHHHHHcCCCCCCEEEEEECchhccCccCCCC---CCCCCCeEEEEEEEEEEEc
Confidence            9  4899999999999999999999999999999988654   6999999999999999874

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.70  E-value=8.7e-17  Score=132.76  Aligned_cols=111  Identities=23%  Similarity=0.296  Sum_probs=91.8

Q ss_pred             CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (437)
Q Consensus       161 ~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~  240 (437)
                      .+.++.++++++|.|. .|..++.|+++|..+                           +.||++||++ +.++.|+.|.
T Consensus        10 ~~~Gl~~~~l~~G~G~-~~~~gd~V~v~Y~g~---------------------------~~dG~~fdss-~~~~~p~~f~   60 (129)
T 1u79_A           10 SPSGLAFCDKVVGYGP-EAVKGQLIKAHYVGK---------------------------LENGKVFDSS-YNRGKPLTFR   60 (129)
T ss_dssp             CTTSCEEEEEECCSSC-BCCTTCEEEEEEEEE---------------------------CTTSCEEEEH-HHHTSCEEEE
T ss_pred             CCCCeEEEEEEcCCCC-CCCCCCEEEEEEEEE---------------------------ECCCCEEEec-CCCCCCEEEE
Confidence            3457899999999984 577888888766554                           4466778777 5557899999


Q ss_pred             cCCCCcchHHHHHhcc------cccCcEEEEEEcCCCCCCcccccc--ccccCCCCceEEEEEEEeee
Q 013755          241 TDEEQVIAGLDRVAAT------MKKEEWAIVTINHEYGFGNVEAKR--DLATIPSCAKLYYEVEMMDF  300 (437)
Q Consensus       241 lg~~~~~~gl~~~l~~------m~~GE~~~i~i~~~~~yg~~~~~~--~~~~ip~~~~l~~~vel~~~  300 (437)
                      +|.+.+++||+.+|.+      |++||++.|.|||.++||+.+...  .-..||++++++|+|+|+++
T Consensus        61 lG~~~~i~G~~~~L~G~~~~~~m~~Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           61 IGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             TTSSSSCHHHHHHHHCBTTBCCCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             eCCCCccHHHHHHhcccccccccCCCCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            9999999999999988      999999999999999999887631  00259999999999999875

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.70  E-value=1.5e-16  Score=125.81  Aligned_cols=85  Identities=34%  Similarity=0.514  Sum_probs=75.2

Q ss_pred             EEEEEecCccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEE
Q 013755          215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYE  294 (437)
Q Consensus       215 ~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~  294 (437)
                      ||++++.||++|+++ +.++.|+.|.+|.+.+++||+.+|.+|++||++.|.+|++++||..+...   .||++++++|+
T Consensus        15 ~y~~~~~dG~~~d~s-~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~---~Ip~~~~l~f~   90 (102)
T 2pbc_A           15 HYTGKLEDGTEFDSS-LPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPP---KIPGGATLVFE   90 (102)
T ss_dssp             EEEEECTTSCEEEES-TTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEE
T ss_pred             EEEEEECCCCEEEeC-CCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCC---CcCcCCeEEEE
Confidence            445555577788887 77778999999999999999999999999999999999999999988754   69999999999


Q ss_pred             EEEeeeecc
Q 013755          295 VEMMDFIKE  303 (437)
Q Consensus       295 vel~~~~~~  303 (437)
                      |+|+++...
T Consensus        91 v~l~~v~~~   99 (102)
T 2pbc_A           91 VELLKIERR   99 (102)
T ss_dssp             EEEEEEGGG
T ss_pred             EEEEEeccc
Confidence            999999764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.69  E-value=1.3e-16  Score=131.49  Aligned_cols=105  Identities=24%  Similarity=0.386  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH
Q 013755          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (437)
Q Consensus       314 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  393 (437)
                      ..+.+..+++.|+.+|+.|+|++|+..|++|+++.|.+               ..+|+|+|.||+++|+|++|+.+|+++
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---------------~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN---------------ITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            45678889999999999999999999999999998875               377999999999999999999999999


Q ss_pred             HHhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          394 LDCDCHN-------VKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       394 l~~~p~~-------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      |+++|++       .++|+++|.++..++++++|+.+|+++|.+.|+
T Consensus        69 l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            9998876       368999999999999999999999999999885

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.69  E-value=1.9e-16  Score=134.77  Aligned_cols=106  Identities=10%  Similarity=0.078  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      ...+..++..|..+++.|+|++|+..|++++.+.|.+.               .+|+++|.||..+|+|++|+.+|++++
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~---------------~~~~~lg~~~~~~g~~~~Ai~~~~~al   97 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV---------------DYIMGLAAIYQIKEQFQQAADLYAVAF   97 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            45577899999999999999999999999999998764               679999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +++|+++.+|+++|.||..+|++++|+..|++++++.|+++
T Consensus        98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999999999753

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.68  E-value=3.5e-16  Score=140.33  Aligned_cols=105  Identities=30%  Similarity=0.552  Sum_probs=91.0

Q ss_pred             CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (437)
Q Consensus       161 ~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~  240 (437)
                      .+.++.++++++|.|. .|..+|.|+++|                           ++++.||++||++ +.++.|+.|.
T Consensus       119 ~~sGl~y~vl~~G~G~-~p~~gD~V~V~Y---------------------------~g~l~dG~vfdss-~~~g~p~~f~  169 (224)
T 1q6h_A          119 SSTGLVYQVVEAGKGE-APKDSDTVVVNY---------------------------KGTLIDGKEFDNS-YTRGEPLSFR  169 (224)
T ss_dssp             CTTSCEEEEEECCSSC-CCCTTCEEEEEE---------------------------EEEETTSCEEEEG-GGGTSCEEEE
T ss_pred             CCCceEEEEEecccCc-cccCCCEEEEEE---------------------------EEEeCCCCEEeec-cccCCCEEEE
Confidence            3567889999999985 778888888755                           5555677888888 7778899999


Q ss_pred             cCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeee
Q 013755          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF  300 (437)
Q Consensus       241 lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~  300 (437)
                      +  +.+++||+.+|.+|++||++.|.||++++||..+.+    .||++++++|+|+|+++
T Consensus       170 l--g~vI~G~eeaL~gMk~Gek~~v~IP~~laYG~~g~~----~IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          170 L--DGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVP----GIPPNSTLVFDVELLDV  223 (224)
T ss_dssp             G--GGSCHHHHHHGGGSCTTCEEEEEECGGGTTTTTCBT----TBCTTCCEEEEEEEEEE
T ss_pred             c--CCcchhHHHHHcCCCCCCEEEEEECchhhcCcCCCC----CCCCCCEEEEEEEEEEe
Confidence            9  489999999999999999999999999999988865    39999999999999986

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.67  E-value=1.1e-16  Score=135.86  Aligned_cols=118  Identities=18%  Similarity=0.238  Sum_probs=91.9

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCCCC
Q 013755           62 PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPN  141 (437)
Q Consensus        62 ~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~~~  141 (437)
                      ++.||.|+|||+++ .||++|+||+     +.|.+|.++++|||+++|.+|++|++++|  .|||++|||+++       
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~-----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v--~ipp~~aYG~~~-------   67 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE-----LSYLHGHRNLIPGLEEALEGREEGEAFQA--HVPAEKAYGPHD-------   67 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE-----EEEETTSSSSCHHHHHHHTTCBTTCEEEE--EECGGGTTCCCC-------
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE-----EEEEECCCCcChHHHHHHcCCCCCCEEEE--EECcHHHcCCCC-------
Confidence            68999999999999 8999999987     89999999999999999999999999999  999999999875       


Q ss_pred             CcEEEEEEEeceeeeecc---------CCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeec
Q 013755          142 SVVQFEVELVSWITVVDL---------SKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (437)
Q Consensus       142 ~~~~f~v~l~~~~~~~d~---------~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~  201 (437)
                      ..+++.+.+..+.....+         ..+|..+.-++.+-       .++.|++|+||++++.++.|+
T Consensus        68 ~~lv~~v~~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~v-------~~~~v~vD~NHPLAGk~L~F~  129 (158)
T 3cgm_A           68 PEGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNPMPLTVVAV-------EGEEVTVDFNHPLAGKDLDFQ  129 (158)
T ss_dssp             GGGEEEEEGGGSCTTSCCCTTCEEEEEETTTEEEEEEEEEE-------ETTEEEEECSCTTTTCCEEEE
T ss_pred             cceEEEEEHHHCCCCCCCccCCEEEEECCCCCEEEEEEEEE-------CCCEEEEeCCccccCCEEEEE
Confidence            345666665554311111         12233222222222       357999999999999998875

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.66  E-value=1.5e-16  Score=127.50  Aligned_cols=86  Identities=24%  Similarity=0.399  Sum_probs=74.6

Q ss_pred             CCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecC-CCCCCCCCCC
Q 013755           57 VDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLP-SELRFGVEGR  135 (437)
Q Consensus        57 ~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip-~~~ayg~~~~  135 (437)
                      ++ +.++.||.|+|+|++++ ||++|++|+  +.|+.|.+|.+++||||+++|.+|++|++++|  .|| |+. ||..+ 
T Consensus        26 ~~-~~~~~gD~V~v~Y~g~~-dG~~fdss~--~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v--~i~fP~~-Yg~~~-   97 (113)
T 1hxv_A           26 SD-KKLANGDIAIIDFTGIV-DNKKLASAS--AQNYELTIGSNSFIKGFETGLIAMKVNQKKTL--ALTFPSD-YHVKE-   97 (113)
T ss_dssp             ----CCCSSEEEEEEEEEEE-TTEECSTTC--CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEE--CCCCCTT-SSSSG-
T ss_pred             CC-CCCCCCCEEEEEEEEEE-CCEEcccCC--ccCEEEEECCCChhHHHHHHHCCCCCCCEEEE--EEeCchh-hCcCC-
Confidence            35 68999999999999999 999999996  48999999999999999999999999999999  885 443 88765 


Q ss_pred             CCCCCCCcEEEEEEEece
Q 013755          136 DSLPPNSVVQFEVELVSW  153 (437)
Q Consensus       136 ~~i~~~~~~~f~v~l~~~  153 (437)
                         .++++++|+|+|.++
T Consensus        98 ---~~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           98 ---LQSKPVTFEVVLKAI  112 (113)
T ss_dssp             ---GGSCCCEEEEEECCB
T ss_pred             ---CCCCEEEEEEEEEEE
Confidence               267899999999876

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=7.2e-16  Score=126.18  Aligned_cols=104  Identities=27%  Similarity=0.348  Sum_probs=98.4

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      .+..++..|..+++.|+|++|+..|++++...|.+               ..+++++|.||.++|+|++|+.+|++++++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------------ARGYSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            57789999999999999999999999999998875               377999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------CCCC
Q 013755          397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD------PQNR  435 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~------P~n~  435 (437)
                      +|+++.+++++|.++..+|++++|+.+|+++++++      |+++
T Consensus        68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~  112 (126)
T 3upv_A           68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR  112 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred             CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHH
Confidence            99999999999999999999999999999999999      7664

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.64  E-value=2.1e-15  Score=129.63  Aligned_cols=107  Identities=23%  Similarity=0.180  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      ...+..++..|..++..|+|++|+..|++++.+.|.+               ..+++++|.||+++|+|++|+.+|++++
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al   72 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---------------PIYLSNRAAAYSASGQHEKAAEDAELAT   72 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3568889999999999999999999999999998865               3779999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +++|+++.+|+++|.+|..+|++++|+.+|+++++++|++.+
T Consensus        73 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           73 VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence            999999999999999999999999999999999999999875

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.63  E-value=3.3e-15  Score=126.56  Aligned_cols=106  Identities=18%  Similarity=0.151  Sum_probs=99.9

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      .....+...|..++..|+|++|+..|++++...|.+.               .+++++|.||..+|+|++|+.+|++++.
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS---------------RFFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            4577889999999999999999999999999988753               6789999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ++|+++.+++++|.+|..+|++++|+..|+++++++|++++
T Consensus        84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  124 (148)
T 2vgx_A           84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE  124 (148)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred             cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence            99999999999999999999999999999999999998764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.61  E-value=2.5e-15  Score=127.59  Aligned_cols=106  Identities=9%  Similarity=-0.006  Sum_probs=97.4

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      +....++..|..|++.|+|++|+..|++++++.|.+.               .+|+++|.||.++|++++|+.+|+++++
T Consensus        29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~~~~~~A~~~~~~al~   93 (150)
T 4ga2_A           29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP---------------KAHRFLGLLYELEENTDKAVECYRRSVE   93 (150)
T ss_dssp             HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            4456678899999999999999999999999988763               7799999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHH-HHHHHHhCCCCCC
Q 013755          396 CDCHNVKALYRRAQAYMEIADLILAELD-IKKAIEADPQNRN  436 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~-~~~al~l~P~n~~  436 (437)
                      ++|+++.+++++|.+|..+|++++|... +++|++++|+|+.
T Consensus        94 ~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~  135 (150)
T 4ga2_A           94 LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA  135 (150)
T ss_dssp             HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH
Confidence            9999999999999999999999887765 6999999999864

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.61  E-value=5.6e-15  Score=123.89  Aligned_cols=107  Identities=19%  Similarity=0.170  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      ......+...|..++..|+|++|+..|++++...|.+.               .+|+++|.||.++|+|++|+.+|++++
T Consensus        15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al   79 (142)
T 2xcb_A           15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA---------------RYFLGLGACRQSLGLYEQALQSYSYGA   79 (142)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34567888999999999999999999999999988753               679999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      .++|+++.+++++|.+|..+|++++|+..|+++++++|++++
T Consensus        80 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  121 (142)
T 2xcb_A           80 LMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA  121 (142)
T ss_dssp             HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred             hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence            999999999999999999999999999999999999998764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.59  E-value=1.1e-14  Score=142.39  Aligned_cols=126  Identities=35%  Similarity=0.519  Sum_probs=110.4

Q ss_pred             ChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCC-CCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHH
Q 013755          310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-SFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIE  388 (437)
Q Consensus       310 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~  388 (437)
                      +.++....+..++..|+.+++.|+|++|+..|++|+++.+... ....++..........+|+|+|.||+++++|++|+.
T Consensus       215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  294 (370)
T 1ihg_A          215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD  294 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            4778889999999999999999999999999999999765421 011222333455667899999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          389 LCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       389 ~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +|++||+++|+++++|+++|.+|..+|+|++|+.+|++|++++|+++
T Consensus       295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~  341 (370)
T 1ihg_A          295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK  341 (370)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999999999999999999999999999875

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.59  E-value=7.8e-15  Score=119.75  Aligned_cols=102  Identities=14%  Similarity=0.068  Sum_probs=90.6

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      .+...|..+++.|++++|+..|++++...|.+.               .+++++|.++..+|++++|+..|+++++++|+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~   83 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPERE---------------EAWRSLGLTQAENEKDGLAIIALNHARMLDPK   83 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            357889999999999999999999999988753               77999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ++.+++.+|.+|..+|++++|+..|+++++++|++.+
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           84 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999999999999999999998864

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.53  E-value=5.2e-14  Score=116.30  Aligned_cols=103  Identities=27%  Similarity=0.369  Sum_probs=97.2

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      .+..+...|..++..|+|++|+..|++++...|.+               ..+++++|.|+..+++|++|+.++++++++
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   72 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALCYLKMQQPEQALADCRRALEL   72 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            36778999999999999999999999999998764               367999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      +|+++.+++++|.+|..+|++++|+..|+++++++|++
T Consensus        73 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~  110 (137)
T 3q49_B           73 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  110 (137)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence            99999999999999999999999999999999999873

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.52  E-value=4.6e-14  Score=126.43  Aligned_cols=119  Identities=12%  Similarity=0.015  Sum_probs=96.5

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChH-HHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDD-EQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      +..+..+|..++..|+|++|+..|++++...|.+....-. ...........+++++|.+|.++|++++|+..|++++++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            5678899999999999999999999999998764310000 000000111222334999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +|+++.+++++|.+|..+|++++|+..|+++++++|++.+
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~  123 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA  123 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            9999999999999999999999999999999999999863

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.50  E-value=2.4e-13  Score=108.30  Aligned_cols=104  Identities=23%  Similarity=0.213  Sum_probs=98.0

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      .+..+...|..++..|+|++|+..|++++...|.+               ..+++++|.++..++++++|+..++++++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---------------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            46788999999999999999999999999998764               367999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +|++..+++++|.++..+|++++|+..|+++++++|++.
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~  106 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP  106 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence            999999999999999999999999999999999999875

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.50  E-value=1.4e-14  Score=122.86  Aligned_cols=98  Identities=13%  Similarity=0.063  Sum_probs=88.3

Q ss_pred             HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHH
Q 013755          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA  403 (437)
Q Consensus       324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a  403 (437)
                      .|..+..+|++++|+..|++++...|..+               ..++++|.+|+++|+|++|+.+|+++++++|+++.+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~---------------~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a   67 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKS---------------IKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA   67 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHH---------------TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            57788889999999999999999877643               558899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          404 LYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       404 ~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      |+++|.+|..+|++++|+..|+++++++|++++
T Consensus        68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~  100 (150)
T 4ga2_A           68 HRFLGLLYELEENTDKAVECYRRSVELNPTQKD  100 (150)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999999864

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.50  E-value=4.3e-13  Score=114.08  Aligned_cols=110  Identities=24%  Similarity=0.362  Sum_probs=103.1

Q ss_pred             hHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHH
Q 013755          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC  390 (437)
Q Consensus       311 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~  390 (437)
                      .......+..+...|..++..|+|++|+..|++++...|.+               ..+++++|.++..+++|++|+.++
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~   70 (166)
T 1a17_A            6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDA   70 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence            35667889999999999999999999999999999997764               367999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          391 SKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       391 ~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +++++++|.++.+++++|.++..+|++++|+..|+++++++|++.
T Consensus        71 ~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~  115 (166)
T 1a17_A           71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK  115 (166)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999999999999999999999999874

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.48  E-value=1.4e-13  Score=145.54  Aligned_cols=120  Identities=17%  Similarity=0.154  Sum_probs=72.7

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC------------ChHH-------HHHHHhhhHHHhhhHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF------------VDDE-------QKLVKSLRVSCWLNSAAC  376 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~~~~-------~~~~~~~~~~~~~nla~~  376 (437)
                      ..+..+.+.|+.+.+.|+|++|+..|++||++.|+....            ..++       ..++......+|+|+|.+
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~   86 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            346667777777777777777777777777776653210            0000       001111123456666666


Q ss_pred             HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       377 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |.++|++++|+.+|++|++++|+++.+|+++|.+|..+|++++|++.|++|++++|++.
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~  145 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFP  145 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            66666666666666666666666666666666666666666666666666666666654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=3.7e-13  Score=112.18  Aligned_cols=107  Identities=36%  Similarity=0.510  Sum_probs=98.6

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      .+..+...|..++..|+|++|+..|++++...|..            .....+++++|.+|..+++|++|+.+|++++++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   94 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP------------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEK   94 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc------------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            46778999999999999999999999999987642            123578999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +|++..+++++|.+|..+|++++|+..|+++++++|++.
T Consensus        95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~  133 (148)
T 2dba_A           95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK  133 (148)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence            999999999999999999999999999999999999875

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.47  E-value=2.9e-13  Score=110.50  Aligned_cols=105  Identities=29%  Similarity=0.389  Sum_probs=98.3

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      .....+...|..++..|+|++|+..|++++...|.+               ..+++++|.++..++++++|+.+++++++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~   78 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---------------AKLYSNRAACYTKLLEFQLALKDCEECIQ   78 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            347788999999999999999999999999987654               36799999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++|++..+++++|.++..+|++++|+..|+++++++|++.
T Consensus        79 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~  118 (133)
T 2lni_A           79 LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK  118 (133)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred             hCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch
Confidence            9999999999999999999999999999999999999875

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.47  E-value=8.9e-13  Score=106.86  Aligned_cols=110  Identities=31%  Similarity=0.354  Sum_probs=100.9

Q ss_pred             hHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHH
Q 013755          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC  390 (437)
Q Consensus       311 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~  390 (437)
                      .......+..+...|..++..|+|++|+..|++++...|..               ..++.++|.++..++++++|+.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~   69 (131)
T 2vyi_A            5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---------------AVYFCNRAAAYSKLGNYAGAVQDC   69 (131)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhhchHHHHHHH
Confidence            34456778899999999999999999999999999987754               367899999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          391 SKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       391 ~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++++..+|+++.+++.+|.++..+|++++|+..|+++++++|++.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  114 (131)
T 2vyi_A           70 ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE  114 (131)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccch
Confidence            999999999999999999999999999999999999999999874

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.47  E-value=5.5e-13  Score=108.82  Aligned_cols=104  Identities=11%  Similarity=0.047  Sum_probs=95.8

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      .+...|..++..|+|++|+..|++++...|.+..            ...+++++|.+++++|+|++|+..|++++..+|+
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~   71 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY------------TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT   71 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            4678899999999999999999999999886531            2367899999999999999999999999999999


Q ss_pred             C---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          400 N---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       400 ~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +   +.+++++|.+|..+|++++|+..|+++++..|+++
T Consensus        72 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  110 (129)
T 2xev_A           72 HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD  110 (129)
T ss_dssp             STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence            9   89999999999999999999999999999999875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.47  E-value=2e-13  Score=128.35  Aligned_cols=103  Identities=28%  Similarity=0.381  Sum_probs=97.7

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..++..|+.+++.|+|++|+..|++|+...|.+               ..+++++|.+|.++|+|++|+.+|+++++++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~   68 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALCYLKMQQPEQALADCRRALELD   68 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            5678999999999999999999999999998865               3779999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |++..+++++|.+|..+|++++|+..|+++++++|+++
T Consensus        69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            99999999999999999999999999999999999875

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.46  E-value=1.1e-13  Score=117.01  Aligned_cols=91  Identities=20%  Similarity=0.230  Sum_probs=83.7

Q ss_pred             hCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCH----------HHHHHHHHHHHHhCCC
Q 013755          330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY----------QGAIELCSKVLDCDCH  399 (437)
Q Consensus       330 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~----------~~Ai~~~~~al~~~p~  399 (437)
                      +.++|++|+..|++++.+.|.+.               .+|+|+|.++..++++          ++|+..|++||+++|+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~a---------------ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~   78 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDA---------------DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK   78 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence            44679999999999999998864               7799999999999876          4999999999999999


Q ss_pred             CHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHhCCCCC
Q 013755          400 NVKALYRRAQAYMEIA-----------DLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg-----------~~~~A~~~~~~al~l~P~n~  435 (437)
                      +..+|+++|.+|..+|           +|++|+.+|++|++++|+|.
T Consensus        79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999885           89999999999999999874

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.43  E-value=6.6e-13  Score=115.63  Aligned_cols=69  Identities=17%  Similarity=0.093  Sum_probs=66.0

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ..++.++|.+|.++|+|++|+.+|+++++++|+++.+++++|.+|..+|++++|+.+|++|++++|+++
T Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence            467899999999999999999999999999999999999999999999999999999999999999763

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.43  E-value=1.1e-12  Score=118.57  Aligned_cols=103  Identities=20%  Similarity=0.280  Sum_probs=96.7

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhc-cCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVS-EDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      +..++..|..++..|+|++|+..|++++...| .+               ..+++++|.|+..+|+|++|+.+|++++++
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   71 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD---------------SVTAYNCGVCADNIKKYKEAADYFDIAIKK   71 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC---------------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Confidence            36789999999999999999999999999987 33               266888999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +|++..+++++|.+|..+|++++|+..|+++++++|+++
T Consensus        72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  110 (228)
T 4i17_A           72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA  110 (228)
T ss_dssp             TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence            999999999999999999999999999999999999875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.43  E-value=4.3e-13  Score=141.84  Aligned_cols=68  Identities=15%  Similarity=0.036  Sum_probs=65.0

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      ..+|+|+|.+|.++|++++|+.+|++||+++|+++.+++++|.+|..+++|++|++.|++++++.|++
T Consensus       111 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          111 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence            57899999999999999999999999999999999999999999999999999999999999987753

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.43  E-value=1.4e-13  Score=111.24  Aligned_cols=91  Identities=14%  Similarity=0.081  Sum_probs=80.9

Q ss_pred             hCCcHHHHHHHHHHHHHh---hccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013755          330 KNGKYERAGKKYNKAADC---VSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYR  406 (437)
Q Consensus       330 ~~g~~~~A~~~y~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~  406 (437)
                      ..|+|++|+..|++++..   .|.               ...+++++|.+|..+|+|++|+.+++++++++|+++.++++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   66 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKD---------------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF   66 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCcc---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHH
Confidence            368999999999999998   443               24779999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          407 RAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       407 ~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +|.++..+|++++|+..|++++.+.|+++
T Consensus        67 l~~~~~~~g~~~~A~~~~~~al~~~p~~~   95 (117)
T 3k9i_A           67 YAMVLYNLGRYEQGVELLLKIIAETSDDE   95 (117)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence            99999999999999999999999999875

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.42  E-value=7.2e-13  Score=104.52  Aligned_cols=101  Identities=21%  Similarity=0.274  Sum_probs=94.2

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      .+...|..++..|+|++|+..|++++...|..               ..+++++|.++..++++++|+.+++++++++|.
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---------------SKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            45678999999999999999999999997764               367899999999999999999999999999999


Q ss_pred             --CHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCCC
Q 013755          400 --NVKALYRRAQAYMEI-ADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       400 --~~~a~~~~g~~~~~l-g~~~~A~~~~~~al~l~P~n~  435 (437)
                        +..+++.+|.++..+ |++++|++.|++++...|++.
T Consensus        73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence              999999999999999 999999999999999999875

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.42  E-value=1.2e-12  Score=117.98  Aligned_cols=103  Identities=19%  Similarity=0.161  Sum_probs=97.6

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..+...|..+++.|++++|+..|++++...|.+.               .+++++|.++.++|++++|+..++++++++
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~   69 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDP---------------EALYWLARTQLKLGLVNPALENGKTLVART   69 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45678899999999999999999999999988753               779999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHhCCCCC
Q 013755          398 CHNVKALYRRAQAYMEI-----------ADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~l-----------g~~~~A~~~~~~al~l~P~n~  435 (437)
                      |+++.+++.+|.++..+           |++++|+..|+++++++|++.
T Consensus        70 P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~  118 (217)
T 2pl2_A           70 PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA  118 (217)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999           999999999999999999875

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.41  E-value=1.9e-12  Score=105.06  Aligned_cols=103  Identities=26%  Similarity=0.340  Sum_probs=95.5

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      +.+..+...|..++..|+|++|+..|++++...|..               ..+++++|.+|..+++|++|+.++++++.
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~   66 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---------------MTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            356788999999999999999999999999997654               36789999999999999999999999999


Q ss_pred             hCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          396 CDCHN-------VKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       396 ~~p~~-------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      ++|.+       ..+++++|.+|..+|++++|+..|++++++.|+
T Consensus        67 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             hccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            99877       899999999999999999999999999999884

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.37  E-value=1.2e-12  Score=128.46  Aligned_cols=103  Identities=15%  Similarity=0.080  Sum_probs=72.3

Q ss_pred             HHHHHHHhhHHHhCCc-HHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          318 AGRKKEEGNLLFKNGK-YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~-~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      ...+..+|..+...|+ |++|+..|++|+.+.|.+               ..+|+++|.++..+|++++|+.+|+++|++
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~---------------~~a~~~~g~~~~~~g~~~eAl~~~~kal~l  195 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---------------YQVWHHRRVLVEWLRDPSQELEFIADILNQ  195 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3455566666666665 666666666666666554               356777777777777777777777777777


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +|++..+|+++|.++..+|++++|+.+|+++++++|+|.
T Consensus       196 dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~  234 (382)
T 2h6f_A          196 DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN  234 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred             CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Confidence            777777777777777777777777777777777777664

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.37  E-value=3.7e-12  Score=113.86  Aligned_cols=97  Identities=19%  Similarity=0.161  Sum_probs=87.6

Q ss_pred             HHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHH
Q 013755          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVK  402 (437)
Q Consensus       323 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~  402 (437)
                      ..|..+++.|+|++|+..|++++++.|.+.               .+++++|.+|..+|++++|+.+|+++++++|+++.
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~  123 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKAPNNV---------------DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA  123 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            399999999999999999999999988753               77999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHH-----------------------------------hccHHHHHHHHHHHHHhCCCC
Q 013755          403 ALYRRAQAYME-----------------------------------IADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       403 a~~~~g~~~~~-----------------------------------lg~~~~A~~~~~~al~l~P~n  434 (437)
                      +++++|.+|..                                   +|+|++|+.+|++|++++|++
T Consensus       124 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            88888777643                                   346889999999999999974

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.37  E-value=2.2e-12  Score=126.60  Aligned_cols=105  Identities=13%  Similarity=0.080  Sum_probs=99.4

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccC-HHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD-YQGAIELCSKVL  394 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-~~~Ai~~~~~al  394 (437)
                      .....+...|..+.+.|+|++|+..|+++|.+.|.+               ..+|+++|.++..+|+ +++|+.+|+++|
T Consensus        95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~---------------~~a~~~~g~~l~~~g~d~~eAl~~~~~al  159 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN---------------YTVWHFRRVLLKSLQKDLHEEMNYITAII  159 (382)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC---------------HHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence            457778899999999999999999999999999875               3789999999999997 999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +++|++..+|+++|.++..+|++++|+.+|++|++++|+|.
T Consensus       160 ~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~  200 (382)
T 2h6f_A          160 EEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY  200 (382)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred             HHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH
Confidence            99999999999999999999999999999999999999985

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.37  E-value=1.1e-11  Score=99.39  Aligned_cols=103  Identities=33%  Similarity=0.442  Sum_probs=96.1

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..+...|..++..|++++|+..|++++...|..               ..+++++|.++..++++++|+..+++++..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   73 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            5678889999999999999999999999987653               3678999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |.+..+++.+|.++..+|++++|+..|+++++++|++.
T Consensus        74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  111 (125)
T 1na0_A           74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA  111 (125)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence            99999999999999999999999999999999999875

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.37  E-value=7.1e-12  Score=108.47  Aligned_cols=104  Identities=15%  Similarity=0.126  Sum_probs=97.5

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHH-HHhccCH--HHHHHHHHHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAAC-CLKLKDY--QGAIELCSKVL  394 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~-~~~~~~~--~~Ai~~~~~al  394 (437)
                      ...+...|..++..|+|++|+..|++++.+.|.+.               .+++++|.+ +...+++  ++|+..+++++
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~l~~~~~~~~~~~A~~~~~~al  108 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA---------------ELYAALATVLYYQASQHMTAQTRAMIDKAL  108 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH---------------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            46788999999999999999999999999988653               678999999 8899999  99999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +++|++..+++.+|.+|..+|++++|+..|+++++++|++.+
T Consensus       109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  150 (177)
T 2e2e_A          109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN  150 (177)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred             HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence            999999999999999999999999999999999999999864

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.35  E-value=1e-12  Score=133.01  Aligned_cols=106  Identities=24%  Similarity=0.352  Sum_probs=99.2

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      +.+..+...|+.+++.|+|++|+..|++|++..|..               ..+++++|.+|.++++|++|+.+|++|++
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   68 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDATRAIE   68 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            456677889999999999999999999999998764               47799999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ++|+++.+++++|.+|..+|++++|++.|++|++++|++.+
T Consensus        69 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~  109 (477)
T 1wao_1           69 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD  109 (477)
T ss_dssp             SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTT
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999999999999999999999864

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.35  E-value=5.9e-12  Score=113.35  Aligned_cols=117  Identities=14%  Similarity=-0.017  Sum_probs=73.8

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCC---------h-----------HHH----------HHHHhhhH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV---------D-----------DEQ----------KLVKSLRV  367 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~---------~-----------~~~----------~~~~~~~~  367 (437)
                      +..+...|..+++.|++++|+..|++++++.|.+....         .           .+.          ..+.....
T Consensus        39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~  118 (217)
T 2pl2_A           39 PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA  118 (217)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence            56778899999999999999999999999988753110         0           000          00111123


Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .+++++|.++..+|++++|+..|+++++++ +++.+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus       119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  185 (217)
T 2pl2_A          119 PLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL  185 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            345556666666666666666666666666 5566666666666666666666666666666666553

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.34  E-value=9.2e-12  Score=108.28  Aligned_cols=118  Identities=13%  Similarity=0.168  Sum_probs=92.8

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC------------ChHH-------HHHHHhhhHHHhhhHHHHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF------------VDDE-------QKLVKSLRVSCWLNSAACCL  378 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~~~~-------~~~~~~~~~~~~~nla~~~~  378 (437)
                      +..+.+.|+.+++.|+|++|+..|++++++.|.+...            ..++       ..........++.++|.++.
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            5678889999999999999999999999998765321            0000       01112222456777888888


Q ss_pred             hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          379 KLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       379 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ..++++.|+..+.+++.++|++..+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus        85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~  141 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI  141 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh
Confidence            888888888888888888888889999999999999999999999999999999875

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.34  E-value=8.4e-12  Score=111.05  Aligned_cols=102  Identities=15%  Similarity=0.081  Sum_probs=85.9

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..+...|..++..|+|++|+..|++++...|..               ..+++++|.+|..+|++++|+.+|++++++.
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  101 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  101 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence            4567788888888888888888888888887653               3668888999999999999999999999888


Q ss_pred             CCCH----------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          398 CHNV----------------KALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       398 p~~~----------------~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      |.+.                .+++++|.+|..+|++++|+..|+++++++|++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          102 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            7766                888899999999999999999999999888865

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.34  E-value=2.6e-12  Score=109.64  Aligned_cols=62  Identities=19%  Similarity=0.357  Sum_probs=55.6

Q ss_pred             EEEEEecCccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccc
Q 013755          215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE  277 (437)
Q Consensus       215 ~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~  277 (437)
                      +|++++.||++||++ +..+.|+.|.+|.+.+++||+.+|.+|++||+..|.|||+++||+.+
T Consensus        34 ~Y~g~l~dG~vfDss-~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~   95 (169)
T 4dt4_A           34 HFTLKLDDGTTAEST-RNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPS   95 (169)
T ss_dssp             EEEEEETTSCEEEEH-HHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCC
T ss_pred             EEEEEECCCCEEEec-CCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            566666778888888 66678999999999999999999999999999999999999999754

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.31  E-value=1.1e-12  Score=103.80  Aligned_cols=95  Identities=25%  Similarity=0.418  Sum_probs=87.4

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      .+..+...|..++..|+|++|+..|++++...|.+               ..+++++|.||.++|+|++|+.+|++++++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN---------------PVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            46778999999999999999999999999998765               367999999999999999999999999999


Q ss_pred             CCCC------HHHHHHHHHHHHHhccHHHHHHHHHH
Q 013755          397 DCHN------VKALYRRAQAYMEIADLILAELDIKK  426 (437)
Q Consensus       397 ~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~  426 (437)
                      +|++      ..+++++|.++..+|+++.|+..+++
T Consensus        68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            9999      99999999999999999988877664

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.31  E-value=7.5e-12  Score=112.92  Aligned_cols=112  Identities=12%  Similarity=0.069  Sum_probs=98.6

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      ....+...|..++..|+|++|+..|++++...|.+.        ........+++++|.++..+|++++|+.+|++++++
T Consensus        75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  146 (228)
T 4i17_A           75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA--------TIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV  146 (228)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH--------HHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence            456678889999999999999999999999887643        223344578999999999999999999999999999


Q ss_pred             CCC--CHHHHHHHHHHHHHhccH---------------------------HHHHHHHHHHHHhCCCCCC
Q 013755          397 DCH--NVKALYRRAQAYMEIADL---------------------------ILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       397 ~p~--~~~a~~~~g~~~~~lg~~---------------------------~~A~~~~~~al~l~P~n~~  436 (437)
                      +|+  ++.+++++|.+|..+|+.                           ++|+.+|+++++++|++++
T Consensus       147 ~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~  215 (228)
T 4i17_A          147 TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTE  215 (228)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence            999  999999999999999998                           9999999999999999863

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.31  E-value=1.4e-11  Score=109.55  Aligned_cols=102  Identities=21%  Similarity=0.197  Sum_probs=93.8

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..++..|..++..|+|++|+..|++++.  + .               ..+++++|.+|..+|+|++|+.+|+++++
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~-~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   65 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQD--P-H---------------SRICFNIGCMYTILKNMTEAEKAFTRSIN   65 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS--C-C---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC--C-C---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4566788999999999999999999999851  1 1               36799999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++|+++.+++++|.+|..+|++++|+..|++++++.|++.
T Consensus        66 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence            9999999999999999999999999999999999999875

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.31  E-value=1.1e-11  Score=104.68  Aligned_cols=64  Identities=28%  Similarity=0.438  Sum_probs=54.5

Q ss_pred             EEEEEEecCccEEeecCCC-------------CCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccc
Q 013755          214 VSYIARLEDGTVFEKKGYD-------------GEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAK  279 (437)
Q Consensus       214 v~y~~~~~~g~~fd~~~~~-------------~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~  279 (437)
                      ++|++++ ||++||++ +.             .+.|+.|.+|.+++++||+.+|.+|++||+..|.|||+++||..+..
T Consensus        10 v~Y~g~l-dG~vfDss-~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aYG~~~~~   86 (157)
T 3pr9_A           10 ISYDGYV-DGKLFDTT-NEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAFGKRDPS   86 (157)
T ss_dssp             EEEEEEE-TTEEEEES-CHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTTCCCCGG
T ss_pred             EEEEEEE-CCEEEEec-cccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhcCCCChH
Confidence            4666777 77777776 43             24799999999999999999999999999999999999999986543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.28  E-value=3.6e-11  Score=110.82  Aligned_cols=106  Identities=20%  Similarity=0.099  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      ...+..+...|..++..|+|++|+..|++++...|..               ..+++++|.+|..+|++++|+.++++++
T Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al  104 (275)
T 1xnf_A           40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---------------PEVFNYLGIYLTQAGNFDAAYEAFDSVL  104 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3457788999999999999999999999999998764               3679999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +++|.+..+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus       105 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A          105 ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            99999999999999999999999999999999999999874

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.28  E-value=1.4e-11  Score=110.31  Aligned_cols=62  Identities=29%  Similarity=0.449  Sum_probs=53.4

Q ss_pred             EEEEEEecCccEEeecCCC-------------CCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccc
Q 013755          214 VSYIARLEDGTVFEKKGYD-------------GEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE  277 (437)
Q Consensus       214 v~y~~~~~~g~~fd~~~~~-------------~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~  277 (437)
                      +||++++ ||++||++ +.             .+.|+.|.+|.+++++||+.+|.+|++||+..|.|||++|||..+
T Consensus        10 v~Y~g~l-dG~vfDss-~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AYGe~~   84 (231)
T 3prb_A           10 ISYDGYV-DGKLFDTT-NEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAFGKRD   84 (231)
T ss_dssp             EEEEEEE-TTEEEEES-CHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTTCCCC
T ss_pred             EEEEEEE-CCEEEEec-cchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhcCCCC
Confidence            4666666 77777776 43             247999999999999999999999999999999999999999865

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.27  E-value=2.5e-11  Score=111.98  Aligned_cols=108  Identities=18%  Similarity=0.160  Sum_probs=98.3

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      .+..++..|..+++.|+|++|+..|++++...|.++.            ...+++++|.||+++|+|++|+..|++++++
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~   81 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW------------AADAQFYLARAYYQNKEYLLAASEYERFIQI   81 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc------------hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            3678899999999999999999999999999887532            3578999999999999999999999999999


Q ss_pred             CCCC---HHHHHHHHHHHHH--------hccHHHHHHHHHHHHHhCCCCCC
Q 013755          397 DCHN---VKALYRRAQAYME--------IADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       397 ~p~~---~~a~~~~g~~~~~--------lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +|++   ..+++++|.++..        +|++++|+..|++++++.|+++.
T Consensus        82 ~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~  132 (261)
T 3qky_A           82 YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL  132 (261)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT
T ss_pred             CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh
Confidence            8855   6889999999999        99999999999999999998863

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.27  E-value=2e-11  Score=110.33  Aligned_cols=107  Identities=12%  Similarity=0.084  Sum_probs=96.1

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..++..|..++..|+|++|+..|++++...|..+.            ...+++++|.+|+++|+|++|+..|+++++.+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   71 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY------------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   71 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence            456888999999999999999999999999886542            24679999999999999999999999999999


Q ss_pred             CCCHH---HHHHHHHHHHH------------------hccHHHHHHHHHHHHHhCCCCCC
Q 013755          398 CHNVK---ALYRRAQAYME------------------IADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       398 p~~~~---a~~~~g~~~~~------------------lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      |++..   +++++|.++..                  +|++++|+..|+++++..|+++.
T Consensus        72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~  131 (225)
T 2yhc_A           72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY  131 (225)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT
T ss_pred             cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh
Confidence            99875   89999999986                  57999999999999999999863

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.25  E-value=5.1e-11  Score=108.46  Aligned_cols=105  Identities=28%  Similarity=0.356  Sum_probs=97.2

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      .....+...|..++..|+|++|+..|++++...|.+               ..+++++|.++.++|++++|+.+++++++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~  201 (258)
T 3uq3_A          137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------------ARGYSNRAAALAKLMSFPEAIADCNKAIE  201 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            345677889999999999999999999999998764               36799999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------CCCC
Q 013755          396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD------PQNR  435 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~------P~n~  435 (437)
                      ++|+++.+++.+|.+|..+|++++|+..|+++++++      |++.
T Consensus       202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~  247 (258)
T 3uq3_A          202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR  247 (258)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred             hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchH
Confidence            999999999999999999999999999999999999      7664

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.23  E-value=6.2e-11  Score=109.35  Aligned_cols=106  Identities=19%  Similarity=0.166  Sum_probs=96.8

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh--------ccCHHHHHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK--------LKDYQGAIEL  389 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--------~~~~~~Ai~~  389 (437)
                      ...+...|..+++.|+|++|+..|++++...|.++.            ...+++++|.|++.        +|++++|+..
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~  119 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEA  119 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch------------hHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            667889999999999999999999999999886543            24779999999999        9999999999


Q ss_pred             HHHHHHhCCCCHHHH-----------------HHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          390 CSKVLDCDCHNVKAL-----------------YRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       390 ~~~al~~~p~~~~a~-----------------~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |+++++.+|++..+.                 +.+|.+|..+|+|++|+..|+++++..|+++
T Consensus       120 ~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  182 (261)
T 3qky_A          120 FQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTP  182 (261)
T ss_dssp             HHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc
Confidence            999999999986555                 9999999999999999999999999999864

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.23  E-value=3.5e-12  Score=108.21  Aligned_cols=70  Identities=13%  Similarity=-0.066  Sum_probs=67.5

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ..+++++|.+++++|+|++|+..|++++.++|+++.+|+++|.+|..+|+|++|+..|++|++++|++++
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~  105 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT  105 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH
Confidence            4679999999999999999999999999999999999999999999999999999999999999999874

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.23  E-value=7.6e-11  Score=118.79  Aligned_cols=106  Identities=28%  Similarity=0.336  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH
Q 013755          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (437)
Q Consensus       314 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  393 (437)
                      +.+.+..++..|+.+++.|+|++|+..|++++...|+                ..+++++|.||.++|++++|+..|+++
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~la~~~~~~g~~~~A~~~~~~a   65 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED----------------PVFYSNLSACYVSVGDLKKVVEMSTKA   65 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----------------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            4577899999999999999999999999999999763                367999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          394 LDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       394 l~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++++|++..+++.+|.+|..+|++++|+..|++++.++|.+.
T Consensus        66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  107 (514)
T 2gw1_A           66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFND  107 (514)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCG
T ss_pred             hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcc
Confidence            999999999999999999999999999999999999998653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.23  E-value=1.3e-10  Score=94.17  Aligned_cols=101  Identities=31%  Similarity=0.419  Sum_probs=87.2

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ..+...|..++..|++++|+..|++++...|..               ..+++++|.++..+|++++|+..+++++...|
T Consensus        36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  100 (136)
T 2fo7_A           36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  100 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            345667788888888888888888888876543               35688899999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      .+..+++.+|.++..+|++++|+..|++++.++|++
T Consensus       101 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            999999999999999999999999999999998864

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.23  E-value=1.9e-11  Score=121.04  Aligned_cols=89  Identities=21%  Similarity=0.382  Sum_probs=80.2

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCC
Q 013755           60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLP  139 (437)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~  139 (437)
                      ..++.||.|+|||+++. ||+.|++++  +.|+.|.+|.|+++|||+++|.||++|++++|  .||+..+||..+.    
T Consensus       156 ~~~~~gD~V~i~y~g~~-dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v--~v~~~~~yg~~~l----  226 (432)
T 1w26_A          156 GAVEAEDRVTIDFTGSV-DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTI--DVTFPEEYHAENL----  226 (432)
T ss_dssp             SCCCTTCEEEECEEEES-SSCBCSSCC--CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEE--EEECCTTCSCTTT----
T ss_pred             CCCCCCCEEEEEEEEee-CCeEccCCC--ccceEEEeCCCCcchHHHHHhCCCCCCCEEEE--EECCchhhCCCCC----
Confidence            67999999999999995 999999987  48999999999999999999999999999999  9999999997653    


Q ss_pred             CCCcEEEEEEEeceeeee
Q 013755          140 PNSVVQFEVELVSWITVV  157 (437)
Q Consensus       140 ~~~~~~f~v~l~~~~~~~  157 (437)
                      ++.+++|+|+|.++....
T Consensus       227 ag~~~~F~V~v~~v~~~~  244 (432)
T 1w26_A          227 KGKAAKFAINLKKVEERE  244 (432)
T ss_dssp             SSCEEEEEEECCEECCEE
T ss_pred             CCceEEEEEEEEEEeccC
Confidence            678999999999986543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.22  E-value=4e-11  Score=121.82  Aligned_cols=113  Identities=23%  Similarity=0.308  Sum_probs=99.7

Q ss_pred             CCCChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHH
Q 013755          307 WEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGA  386 (437)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A  386 (437)
                      ..++..++...+..+...|+.+++.|+|++|+..|++++...|.+               ..+++++|.||.++|++++|
T Consensus        14 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A   78 (537)
T 3fp2_A           14 KGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE---------------PVFYSNISACYISTGDLEKV   78 (537)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHH
T ss_pred             cCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC---------------cHHHHHHHHHHHHcCCHHHH
Confidence            446778888999999999999999999999999999999998765               37799999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          387 IELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       387 i~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +..|+++++++|+++.+++.+|.++..+|++++|+..|+ ++.++|++.
T Consensus        79 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~  126 (537)
T 3fp2_A           79 IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD  126 (537)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC------
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC
Confidence            999999999999999999999999999999999999996 888888754

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.21  E-value=3.1e-11  Score=96.71  Aligned_cols=85  Identities=9%  Similarity=0.008  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 013755          336 RAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIA  415 (437)
Q Consensus       336 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg  415 (437)
                      .|+..|++++...|.+.               .+++++|.+|..+|++++|+.+|+++++++|++..+++.+|.+|..+|
T Consensus         3 ~a~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   67 (115)
T 2kat_A            3 AITERLEAMLAQGTDNM---------------LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG   67 (115)
T ss_dssp             CHHHHHHHHHTTTCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence            58899999999887653               679999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhCCCCC
Q 013755          416 DLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       416 ~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++++|+..|+++++++|++.
T Consensus        68 ~~~~A~~~~~~al~~~~~~~   87 (115)
T 2kat_A           68 DRAGARQAWESGLAAAQSRG   87 (115)
T ss_dssp             CHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhccccc
Confidence            99999999999999988543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.20  E-value=1.6e-10  Score=93.61  Aligned_cols=102  Identities=30%  Similarity=0.413  Sum_probs=93.6

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ..+...|..++..|++++|+..|++++...|..               ..+++++|.++...+++++|+..+++++..+|
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~   66 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP   66 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc---------------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence            356788999999999999999999999986653               35688999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .+..+++.+|.++..+|++++|+..|++++.+.|++.
T Consensus        67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  103 (136)
T 2fo7_A           67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA  103 (136)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence            9999999999999999999999999999999998763

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.20  E-value=3.5e-11  Score=96.17  Aligned_cols=74  Identities=14%  Similarity=0.221  Sum_probs=60.6

Q ss_pred             EEEEEEecCccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEc-CCCCCCccccccccccCCCCceEE
Q 013755          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTIN-HEYGFGNVEAKRDLATIPSCAKLY  292 (437)
Q Consensus       214 v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~-~~~~yg~~~~~~~~~~ip~~~~l~  292 (437)
                      ++|++++ ||++||++ +  +.|+.|.+|.+++++||+.+|.+|++||+..|.|+ |.. ||..+.        ++++++
T Consensus        38 v~Y~g~~-dG~~fdss-~--~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~~--------~g~~l~  104 (113)
T 1hxv_A           38 IDFTGIV-DNKKLASA-S--AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKEL--------QSKPVT  104 (113)
T ss_dssp             EEEEEEE-TTEECSTT-C--CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSGG--------GSCCCE
T ss_pred             EEEEEEE-CCEEcccC-C--ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCCC--------CCCEEE
Confidence            3566666 77788876 3  68999999999999999999999999999999995 333 876442        467899


Q ss_pred             EEEEEeee
Q 013755          293 YEVEMMDF  300 (437)
Q Consensus       293 ~~vel~~~  300 (437)
                      |+|+|+++
T Consensus       105 F~V~l~~V  112 (113)
T 1hxv_A          105 FEVVLKAI  112 (113)
T ss_dssp             EEEEECCB
T ss_pred             EEEEEEEE
Confidence            99999876

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.20  E-value=2.2e-10  Score=98.25  Aligned_cols=62  Identities=19%  Similarity=0.412  Sum_probs=54.6

Q ss_pred             EEEEEEecCccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccc
Q 013755          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE  277 (437)
Q Consensus       214 v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~  277 (437)
                      ++|++++.+|++|+++ +. ..|+.|.+|.+.+++||+.+|.+|++||+..|.|||..+||..+
T Consensus        11 v~Y~g~~~dG~~fdss-~~-~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~   72 (171)
T 2k8i_A           11 LAYQVRTEDGVLVDES-PV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (171)
T ss_dssp             EEEEEEETTSCEEEEC-CS-SSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC
T ss_pred             EEEEEEECCCCEEeec-cC-CcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC
Confidence            4666776688889887 44 47999999999999999999999999999999999999999763

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.20  E-value=1.3e-10  Score=109.57  Aligned_cols=112  Identities=18%  Similarity=0.087  Sum_probs=96.8

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc-cCHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL-KDYQGAIELCSKVL  394 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-~~~~~Ai~~~~~al  394 (437)
                      ..+..+.+.|..+...|+|++|+..|++|+.+.+.....         .....++.++|.+|..+ |++++|+.+|++|+
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---------~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al  145 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---------RRGANFKFELGEILENDLHDYAKAIDCYELAG  145 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            346788899999999999999999999999988754321         22356789999999996 99999999999999


Q ss_pred             HhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          395 DCDCHN------VKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       395 ~~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ++.|.+      ..++.++|.+|..+|+|++|+..|++++++.|++..
T Consensus       146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence            998754      578999999999999999999999999999998753

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.20  E-value=5.8e-11  Score=122.55  Aligned_cols=103  Identities=8%  Similarity=-0.082  Sum_probs=75.0

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+...|..++..|+|++|+..|++++++.|.+               ..+++++|.+|..+|++++|+.+|+++++++
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   87 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---------------PEAVARLGRVRWTQQRHAEAAVLLQQASDAA   87 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            4567778888888888888888888888876654               2456677777777777777777777777777


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |++..+++++|.+|..+|++++|++.|+++++++|++.
T Consensus        88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  125 (568)
T 2vsy_A           88 PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEP  125 (568)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            77777777777777777777777777777777776653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.19  E-value=1.4e-10  Score=99.59  Aligned_cols=102  Identities=19%  Similarity=0.069  Sum_probs=78.8

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ..+...|..++..|++++|+..|++++...|..               ..++.++|.++..+|++++|+.+++++++.+|
T Consensus        77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  141 (186)
T 3as5_A           77 KVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN---------------FNVRFRLGVALDNLGRFDEAIDSFKIALGLRP  141 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh---------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence            344556666666666666666666666665432               35678888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .+..+++.+|.++..+|++++|+..|+++++++|++.
T Consensus       142 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence            8888888888888888888888888888888888765

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.19  E-value=2.5e-10  Score=108.96  Aligned_cols=108  Identities=26%  Similarity=0.306  Sum_probs=97.1

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      .......|..+++.|++++|+..|++++...|.+.           .....++.++|.++.++|++++|+..|+++++++
T Consensus       234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  302 (359)
T 3ieg_A          234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVA-----------EYTVRSKERICHCFSKDEKPVEAIRICSEVLQME  302 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch-----------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            34456679999999999999999999999987643           2344668899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      |+++.+++.+|.++..+|++++|+..|+++++++|++..
T Consensus       303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~  341 (359)
T 3ieg_A          303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ  341 (359)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence            999999999999999999999999999999999998853

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.19  E-value=1.2e-11  Score=130.73  Aligned_cols=101  Identities=16%  Similarity=0.011  Sum_probs=60.4

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..+...|..++..|+|++|+..|+++++..|.+.               .+++++|.+|.++|+|++|+.+|++|++++
T Consensus       433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  497 (681)
T 2pzi_A          433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW---------------RLVWYRAVAELLTGDYDSATKHFTEVLDTF  497 (681)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            56677778888888888888888888887776643               345555555555555555555555555555


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      |+++.+++++|.+|..+|+|++ +.+|++|++++|++
T Consensus       498 P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~  533 (681)
T 2pzi_A          498 PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV  533 (681)
T ss_dssp             TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC
T ss_pred             CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch
Confidence            5555555555555555555555 55555555555544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.18  E-value=1e-10  Score=95.84  Aligned_cols=70  Identities=19%  Similarity=0.116  Sum_probs=67.2

Q ss_pred             hHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       366 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .+..+.++|.+|+++|+|++|+.+|+++|+++|.++.+|+++|.+|..+|++++|+.+|++|++++|++.
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~   81 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI   81 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh
Confidence            3567899999999999999999999999999999999999999999999999999999999999999875

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.18  E-value=6.1e-11  Score=97.22  Aligned_cols=70  Identities=20%  Similarity=0.201  Sum_probs=66.5

Q ss_pred             hHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       366 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .+.++.|+|.+++++|+|++|+.+|++||+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++.
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~   76 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR   76 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence            3567889999999999999999999999999999999999999999999999999999999999998765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.18  E-value=9.9e-11  Score=110.29  Aligned_cols=110  Identities=21%  Similarity=0.287  Sum_probs=92.0

Q ss_pred             HHHHHHHHhhHHHhC-CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          317 AAGRKKEEGNLLFKN-GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      .+..+...|..+... |+|++|+..|++|+.+.|.....         .....++.++|.+|.++|+|++|+.+|+++++
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  186 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV---------ALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            356788899999997 99999999999999998754321         12246789999999999999999999999999


Q ss_pred             hCCCCHH-------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          396 CDCHNVK-------ALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       396 ~~p~~~~-------a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +.|++..       +++++|.++..+|++++|+..|+++++++|+..
T Consensus       187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  233 (292)
T 1qqe_A          187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA  233 (292)
T ss_dssp             TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred             HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence            9987643       689999999999999999999999999999864

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.18  E-value=7.1e-11  Score=114.12  Aligned_cols=103  Identities=21%  Similarity=0.140  Sum_probs=95.8

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..+...|..+++.|+|++|+..|++++...|.+               ..+++++|.+|.++|++++|+..|+++++++
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  129 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD---------------AEAWQFLGITQAENENEQAAIVALQRCLELQ  129 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            3457788999999999999999999999998764               3679999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |++..+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus       130 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  167 (365)
T 4eqf_A          130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYK  167 (365)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH
T ss_pred             CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccch
Confidence            99999999999999999999999999999999998754

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.18  E-value=9e-11  Score=113.39  Aligned_cols=102  Identities=18%  Similarity=0.231  Sum_probs=94.3

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..+...|..++..|+|++|+..|++++...|.+               ..+++++|.+|.++|++++|+.+|+++++++
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  277 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED---------------YSLWNRLGATLANGDRSEEAVEAYTRALEIQ  277 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            4567788999999999999999999999997764               3679999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      |+++.+++++|.+|..+|++++|+..|+++++++|++
T Consensus       278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999999875

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.17  E-value=3.5e-10  Score=97.11  Aligned_cols=103  Identities=17%  Similarity=0.159  Sum_probs=93.6

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+...|..++..|++++|+..|++++...|..               ..++.++|.++..++++++|+..+++++..+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  106 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDN---------------VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN  106 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            4567788999999999999999999999987653               3678899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |.+..+++.+|.++..+|++++|+..|+++++++|++.
T Consensus       107 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~  144 (186)
T 3as5_A          107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG  144 (186)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch
Confidence            99999999999999999999999999999999998764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.17  E-value=3.6e-11  Score=93.34  Aligned_cols=93  Identities=12%  Similarity=0.060  Sum_probs=83.7

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHH-HhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVS-CWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      ....|..++..|+|++|+..|++++...|.+.               . +++++|.+|..+|++++|+.+|+++++++|+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   67 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGK---------------DEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD   67 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTH---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            35789999999999999999999999987653               5 7999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +..++++        +.+.+|+..|++++.++|++..
T Consensus        68 ~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~~   96 (99)
T 2kc7_A           68 SPALQAR--------KMVMDILNFYNKDMYNQLEHHH   96 (99)
T ss_dssp             STHHHHH--------HHHHHHHHHHCCTTHHHHCCSS
T ss_pred             cHHHHHH--------HHHHHHHHHHHHHhccCccccc
Confidence            9998865        7889999999999999998764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.17  E-value=2.2e-10  Score=104.16  Aligned_cols=102  Identities=25%  Similarity=0.332  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..+...|..++..|+|++|+..|++++... .+               ..+++++|.+|..+|++++|+.+++++++
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~   66 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD---------------ITYLNNRAAAEYEKGEYETAISTLNDAVE   66 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC---------------THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            467889999999999999999999999999987 33               36799999999999999999999999999


Q ss_pred             hCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          396 CDCHN-------VKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       396 ~~p~~-------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      ++|++       +.+++.+|.++..+|++++|+..|++++.++|+
T Consensus        67 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  111 (258)
T 3uq3_A           67 QGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT  111 (258)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             hCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch
Confidence            99877       799999999999999999999999999998764

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.16  E-value=2.5e-10  Score=96.21  Aligned_cols=63  Identities=32%  Similarity=0.590  Sum_probs=54.6

Q ss_pred             EEEEEEec-CccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCcccc
Q 013755          214 VSYIARLE-DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA  278 (437)
Q Consensus       214 v~y~~~~~-~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~  278 (437)
                      +||++++. +|++||++ +. ..|+.|.+|.+.+++||+.+|.+|++|++..|.+||..+||..+.
T Consensus        15 v~Y~g~~~~dG~~fdss-~~-~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~~   78 (151)
T 2kr7_A           15 IEYEVREQGSSIVLDSN-IS-KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYES   78 (151)
T ss_dssp             EEEEEEESSCSCEEEES-TT-TCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCS
T ss_pred             EEEEEEECCCCCEEEeC-CC-CcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCCc
Confidence            35666665 78888887 44 479999999999999999999999999999999999999997653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.15  E-value=1e-10  Score=118.07  Aligned_cols=102  Identities=18%  Similarity=0.053  Sum_probs=96.0

Q ss_pred             HHHHHHhhHHHhC---------CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc--------c
Q 013755          319 GRKKEEGNLLFKN---------GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL--------K  381 (437)
Q Consensus       319 ~~~~~~g~~~~~~---------g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--------~  381 (437)
                      ..+...|..++..         |+|++|+..|++|+.+.|.+.               .+++++|.+|..+        +
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~~~~~~~~~g  235 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG---------------RSWYILGNAYLSLYFNTGQNPK  235 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHHHHhhccccc
Confidence            5677889999999         999999999999999988753               6799999999999        9


Q ss_pred             CHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          382 DYQGAIELCSKVLDCDC---HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       382 ~~~~Ai~~~~~al~~~p---~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++++|+.+|+++++++|   +++.+|+++|.+|..+|++++|+..|++|++++|++.
T Consensus       236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  292 (474)
T 4abn_A          236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP  292 (474)
T ss_dssp             HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999   9999999999999999999999999999999999885

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.15  E-value=3e-10  Score=108.38  Aligned_cols=101  Identities=21%  Similarity=0.278  Sum_probs=95.6

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      .++.+...|..++..|+|++|+..|++++...|..               ..+++++|.++..+|++++|+..+++++++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   66 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------------YIAYYRRATVFLAMGKSKAALPDLTKVIAL   66 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            35778999999999999999999999999988764               367999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      +|++..+++.+|.++..+|++++|+..|+++++++|
T Consensus        67 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP  102 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred             CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999998

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.15  E-value=2.2e-10  Score=110.30  Aligned_cols=102  Identities=14%  Similarity=0.172  Sum_probs=95.2

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..+...|..++..|+|++|+..|++++...|..               ..+++++|.++..+|++++|+..|+++++++
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  281 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---------------YLLWNKLGATLANGNQSEEAVAAYRRALELQ  281 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4567788999999999999999999999997764               3679999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      |++..+++++|.+|..+|++++|+..|+++++++|++
T Consensus       282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999877

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.15  E-value=1.7e-10  Score=106.33  Aligned_cols=104  Identities=13%  Similarity=0.079  Sum_probs=74.3

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      .+...|..++..|+|++|+..|++++. .+.+...           ...++.++|.+|..+|++++|+.+++++++++|.
T Consensus        39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~  106 (272)
T 3u4t_A           39 IYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKA-----------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT  106 (272)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc
Confidence            344556666666666666666666666 3322211           2445778888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++.+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus       107 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  142 (272)
T 3u4t_A          107 RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP  142 (272)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH
Confidence            888888888888888888888888888888777653

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.14  E-value=1.7e-10  Score=100.98  Aligned_cols=62  Identities=19%  Similarity=0.412  Sum_probs=54.2

Q ss_pred             EEEEEEecCccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccc
Q 013755          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE  277 (437)
Q Consensus       214 v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~  277 (437)
                      ++|++++.||++||++ |. ..|+.|.+|.++++|||+.+|.+|++||+..|.|||+.+||+.+
T Consensus        11 v~Y~g~~~dG~~fdss-~~-~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~   72 (196)
T 2kfw_A           11 LAYQVRTEDGVLVDES-PV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (196)
T ss_dssp             EEEEEEETTTEEEEEC-CT-TSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC
T ss_pred             EEEEEEECCCCEEEec-CC-CCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC
Confidence            3566666678888887 44 47999999999999999999999999999999999999999764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.14  E-value=2.9e-10  Score=102.65  Aligned_cols=100  Identities=18%  Similarity=0.141  Sum_probs=69.2

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  400 (437)
                      +...|..++..|++++|+..|++++...|..               ..++.++|.++.++|++++|+..++++++.+|++
T Consensus       128 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  192 (243)
T 2q7f_A          128 FYMLGTVLVKLEQPKLALPYLQRAVELNEND---------------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH  192 (243)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            3344444455555555555555555444332               3567777888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ..+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus       193 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~  227 (243)
T 2q7f_A          193 ADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM  227 (243)
T ss_dssp             HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence            88888888888888888888888888888887764

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.13  E-value=1.4e-10  Score=117.22  Aligned_cols=102  Identities=19%  Similarity=0.107  Sum_probs=96.1

Q ss_pred             HHHHHHHhhHHHhCCcH-HHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          318 AGRKKEEGNLLFKNGKY-ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      +..+...|..++..|+| ++|+..|++|+++.|..               ..+++++|.+|.++|++++|+.+|++++++
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  166 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL---------------VEAWNQLGEVYWKKGDVTSAHTCFSGALTH  166 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            56788899999999999 99999999999998765               367999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHhCCCCC
Q 013755          397 DCHNVKALYRRAQAYMEI---------ADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~l---------g~~~~A~~~~~~al~l~P~n~  435 (437)
                      +|+ ..+++++|.+|..+         |++++|+..|++|++++|++.
T Consensus       167 ~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  213 (474)
T 4abn_A          167 CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG  213 (474)
T ss_dssp             CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH
Confidence            998 79999999999999         999999999999999999875

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.13  E-value=6.3e-10  Score=100.37  Aligned_cols=67  Identities=13%  Similarity=0.131  Sum_probs=41.2

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      .++.++|.++.++|++++|+..++++++.+|++..+++.+|.++..+|++++|+..|+++++++|++
T Consensus       126 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  192 (243)
T 2q7f_A          126 DLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH  192 (243)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            3455566666666666666666666666666666666666666666666666666666666665554

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.13  E-value=3.1e-10  Score=109.35  Aligned_cols=103  Identities=16%  Similarity=0.088  Sum_probs=95.8

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..+...|..++..|+|++|+..|++++...|..               ..+++++|.+|..+|++++|+.+|+++++++
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  128 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH---------------MEAWQYLGTTQAENEQELLAISALRRCLELK  128 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC
Confidence            3456788999999999999999999999987764               3678999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |++..+++.+|.+|..+|++++|+..|++++.++|++.
T Consensus       129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  166 (368)
T 1fch_A          129 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA  166 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence            99999999999999999999999999999999999875

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.13  E-value=3.4e-10  Score=97.99  Aligned_cols=101  Identities=15%  Similarity=0.154  Sum_probs=73.2

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHH---------------
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ---------------  384 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~---------------  384 (437)
                      .+...|..++..|++++|+..|++++...|.+.               .+++++|.++..+|+++               
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~   72 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRG---------------DVKLAKADCLLETKQFELAQELLATIPLEYQD   72 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH---------------HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH---------------HHHHHHHHHHHHCCCHHHHHHHHHHhhhccCC
Confidence            456677777888888888888888887777643               23334444444333333               


Q ss_pred             -------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          385 -------------------GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       385 -------------------~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                                         +|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|+..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  142 (176)
T 2r5s_A           73 NSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ  142 (176)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT
T ss_pred             hHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC
Confidence                               345666667777888888999999999999999999999999999988753

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.12  E-value=9.8e-11  Score=123.65  Aligned_cols=101  Identities=14%  Similarity=0.048  Sum_probs=95.5

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ..+...|..++..|+|++|+..|++|+++.|.+.               .+++++|.+|.++|+|++ +.+|++|++++|
T Consensus       468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---------------~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P  531 (681)
T 2pzi_A          468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL---------------APKLALAATAELAGNTDE-HKFYQTVWSTND  531 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS---------------HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHcCChHH-HHHHHHHHHhCC
Confidence            4667789999999999999999999999998764               679999999999999999 999999999999


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++..+++++|.+|..+|++++|+++|++|++++|++.
T Consensus       532 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  568 (681)
T 2pzi_A          532 GVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFT  568 (681)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccH
Confidence            9999999999999999999999999999999999874

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.12  E-value=3.9e-10  Score=106.47  Aligned_cols=112  Identities=19%  Similarity=0.143  Sum_probs=96.1

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+...|..++..|+|++|+..|++++...+.......      ......++.++|.+|.++|++++|+.+++++++++
T Consensus       193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  266 (330)
T 3hym_B          193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT------VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI  266 (330)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT------TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence            456778899999999999999999999998754221100      00123678999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |++..+++.+|.++..+|++++|+..|+++++++|++.
T Consensus       267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  304 (330)
T 3hym_B          267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT  304 (330)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred             ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence            99999999999999999999999999999999999875

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.12  E-value=5.8e-11  Score=100.16  Aligned_cols=83  Identities=10%  Similarity=-0.002  Sum_probs=75.4

Q ss_pred             HHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH
Q 013755          339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLI  418 (437)
Q Consensus       339 ~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~  418 (437)
                      ..|++++.+.|.+               ..+++++|.+++..|+|++|+..|++++.++|+++.+++.+|.+|..+|+|+
T Consensus         8 ~~~~~al~~~p~~---------------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~   72 (148)
T 2vgx_A            8 GTIAMLNEISSDT---------------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD   72 (148)
T ss_dssp             CSHHHHTTCCHHH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHcCCHhh---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHH
Confidence            3477777776653               4678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCC
Q 013755          419 LAELDIKKAIEADPQNRN  436 (437)
Q Consensus       419 ~A~~~~~~al~l~P~n~~  436 (437)
                      +|+..|++++.++|+++.
T Consensus        73 ~A~~~~~~al~l~p~~~~   90 (148)
T 2vgx_A           73 LAIHSYSYGAVMDIXEPR   90 (148)
T ss_dssp             HHHHHHHHHHHHSTTCTH
T ss_pred             HHHHHHHHHHhcCCCCch
Confidence            999999999999999864

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.11  E-value=4.1e-10  Score=103.67  Aligned_cols=103  Identities=19%  Similarity=0.226  Sum_probs=92.9

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..+...|..++..|++++|+..|++++...|...               .++.++|.+|..+|++++|+.+++++++++
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  138 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL---------------DMYGQIGSYFYNKGNFPLAIQYMEKQIRPT  138 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---------------HHHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence            45578899999999999999999999999987754               679999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |.++.+++++|...+..+++++|+..|+++++++|++.
T Consensus       139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~  176 (272)
T 3u4t_A          139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY  176 (272)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccch
Confidence            99999999999444445699999999999999999874

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.11  E-value=4.3e-10  Score=105.74  Aligned_cols=102  Identities=13%  Similarity=0.032  Sum_probs=87.4

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHH-----------
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGA-----------  386 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A-----------  386 (437)
                      ...+...|..++..|++++|+..|++++...|.+.               .+++++|.++..+|++++|           
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~la~~~~~~g~~~~A~~~l~~~~~~~  181 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG---------------EIGLLLAETLIALNRSEDAEAVLXTIPLQD  181 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH---------------HHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch---------------hHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence            45678999999999999999999999999998753               4566667666666666655           


Q ss_pred             -----------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          387 -----------------------IELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       387 -----------------------i~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                                             +..++++++.+|+++.+++++|.+|..+|++++|+..|+++++++|++
T Consensus       182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence                                   455666688899999999999999999999999999999999999987

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.11  E-value=7.2e-10  Score=84.00  Aligned_cols=84  Identities=29%  Similarity=0.381  Sum_probs=72.6

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      .+..+...|..++..++|++|+..|++++...|..               ..+++++|.++.+++++++|+.++++++++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            45677888999999999999999999999887654               356889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhc
Q 013755          397 DCHNVKALYRRAQAYMEIA  415 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg  415 (437)
                      +|++..+++++|.++..+|
T Consensus        73 ~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CTTCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            9999999999999988764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.11  E-value=6.4e-10  Score=110.27  Aligned_cols=106  Identities=26%  Similarity=0.309  Sum_probs=96.0

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ......|..++..|++++|+..|++++...|.+.           .....++.++|.++.++|++++|+..|+++++++|
T Consensus       258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  326 (450)
T 2y4t_A          258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIA-----------EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP  326 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH-----------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch-----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            3445669999999999999999999999887643           22346789999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +++.+++.+|.+|..+|++++|+..|+++++++|+++
T Consensus       327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  363 (450)
T 2y4t_A          327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ  363 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchH
Confidence            9999999999999999999999999999999999875

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.10  E-value=1e-09  Score=97.45  Aligned_cols=67  Identities=16%  Similarity=0.034  Sum_probs=43.3

Q ss_pred             HHhhhHHHHHHhc-cCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          368 SCWLNSAACCLKL-KDYQGAIELCSKVLD--CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       368 ~~~~nla~~~~~~-~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      .++.++|.++..+ |++++|+..++++++  .+|.+..+++.+|.++..+|++++|+..|+++++++|++
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  146 (225)
T 2vq2_A           77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF  146 (225)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            4556666666666 666666666666666  445556666666666666666666666666666666654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.10  E-value=5.2e-10  Score=110.93  Aligned_cols=106  Identities=20%  Similarity=0.281  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      ...+..+...|..+++.|+|++|+..|++++...|.+               ..+++++|.+|..+|++++|+..|++++
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al   87 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------------YIAYYRRATVFLAMGKSKAALPDLTKVI   87 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3567889999999999999999999999999987754               4779999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +++|++..+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus        88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A           88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence            99999999999999999999999999999999999999764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.10  E-value=1.4e-10  Score=90.79  Aligned_cols=69  Identities=17%  Similarity=0.118  Sum_probs=65.5

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ..+++++|.+|+++|+|++|+.+|+++++++|+++.+|+++|.+|..+|++++|+..|++++++.|++.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~   75 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG   75 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence            467999999999999999999999999999999999999999999999999999999999999987654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.10  E-value=5e-10  Score=105.53  Aligned_cols=118  Identities=14%  Similarity=0.079  Sum_probs=85.0

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC-------------C--hHHHHH------HHhhhHHHhhhHHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-------------V--DDEQKL------VKSLRVSCWLNSAAC  376 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~--~~~~~~------~~~~~~~~~~nla~~  376 (437)
                      ...+...|..+.+.|++++|+..|++++...|.....             .  ++....      .......+++++|.+
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~  209 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAAC  209 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            3445556666666666666666666666655432100             0  000000      011124678899999


Q ss_pred             HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH-HHHHHHHHHHhCCCCC
Q 013755          377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLIL-AELDIKKAIEADPQNR  435 (437)
Q Consensus       377 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~-A~~~~~~al~l~P~n~  435 (437)
                      +.++|+|++|+..++++|+++|+++.+++++|.++..+|++++ |..+++++++++|+++
T Consensus       210 ~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~  269 (291)
T 3mkr_A          210 HMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP  269 (291)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence            9999999999999999999999999999999999999999976 5688999999999986

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.09  E-value=6.1e-10  Score=100.51  Aligned_cols=106  Identities=10%  Similarity=0.040  Sum_probs=91.4

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh------------------
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK------------------  379 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~------------------  379 (437)
                      ...+...|..+++.|+|++|+..|+++++..|.+...            ..+++++|.++.+                  
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~  108 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------------DYVMYMRGLTNMALDDSALQGFFGVDRSDRD  108 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH------------HHHHHHHHHHHHHHHC--------------C
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH------------HHHHHHHHHHHHhhhhhhhhhhhccchhhcC
Confidence            4567889999999999999999999999999876521            2467778888775                  


Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          380 LKDYQGAIELCSKVLDCDCHNVKAL-----------------YRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       380 ~~~~~~Ai~~~~~al~~~p~~~~a~-----------------~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++++++|+..|+++++.+|++..+.                 +.+|.+|..+|+|++|+..|+++++..|+++
T Consensus       109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~  181 (225)
T 2yhc_A          109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ  181 (225)
T ss_dssp             CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred             cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence            6799999999999999999987554                 6789999999999999999999999999874

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.09  E-value=7.4e-10  Score=104.13  Aligned_cols=108  Identities=14%  Similarity=0.125  Sum_probs=92.5

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..+...|..++..|+|++|+..|++|+......+..        ......+++|+|.+|.++|+|++|+.+++++++
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~  224 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            346678999999999999999999999999876543221        234567899999999999999999999999999


Q ss_pred             hCCCC------HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhC
Q 013755          396 CDCHN------VKALYRRAQAYMEIA-DLILAELDIKKAIEAD  431 (437)
Q Consensus       396 ~~p~~------~~a~~~~g~~~~~lg-~~~~A~~~~~~al~l~  431 (437)
                      +.+..      ..+|+++|.+|..+| .+++|+.+|++|+.+.
T Consensus       225 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          225 ISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            86544      789999999999999 5799999999999874

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.07  E-value=1.2e-09  Score=103.04  Aligned_cols=105  Identities=13%  Similarity=0.067  Sum_probs=96.9

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      ....+...|..++..|+|++|+..|++++...|..               ..++.++|.++..+|++++|+.++++++++
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   84 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER---------------EEAWRSLGLTQAENEKDGLAIIALNHARML   84 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            34557889999999999999999999999987754               367889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +|++..+++.+|.++..+|++++|+..|+++++++|++..
T Consensus        85 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  124 (327)
T 3cv0_A           85 DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  124 (327)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTT
T ss_pred             CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH
Confidence            9999999999999999999999999999999999998754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.07  E-value=1.1e-09  Score=112.96  Aligned_cols=103  Identities=9%  Similarity=-0.014  Sum_probs=96.9

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+...|..++..|+|++|+..|+++++..|.+               ..+++++|.+|.++|++++|+.+++++++++
T Consensus        57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  121 (568)
T 2vsy_A           57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH---------------PGIALWLGHALEDAGQAEAAAAAYTRAHQLL  121 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            5567889999999999999999999999998765               3679999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhCCCCC
Q 013755          398 CHNVKALYRRAQAYMEI---ADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~l---g~~~~A~~~~~~al~l~P~n~  435 (437)
                      |++..+++++|.++..+   |++++|++.|+++++++|++.
T Consensus       122 p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  162 (568)
T 2vsy_A          122 PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV  162 (568)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred             CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence            99999999999999999   999999999999999999874

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.07  E-value=6.2e-10  Score=108.51  Aligned_cols=118  Identities=14%  Similarity=0.057  Sum_probs=83.8

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC-------------ChHHH------HHHHhhhHHHhhhHHHHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-------------VDDEQ------KLVKSLRVSCWLNSAACCL  378 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~~~~------~~~~~~~~~~~~nla~~~~  378 (437)
                      +..+...|..+++.|++++|+..|++++...|.....             .++..      .........++.++|.++.
T Consensus        67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  146 (388)
T 1w3b_A           67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK  146 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            4567788888888888999998888888887654210             00000      0111112345667777888


Q ss_pred             hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          379 KLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       379 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .+|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..|+++++++|++.
T Consensus       147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  203 (388)
T 1w3b_A          147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL  203 (388)
T ss_dssp             TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence            888888888888888888888888888888888888888888888888888887764

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.07  E-value=1e-10  Score=98.54  Aligned_cols=64  Identities=33%  Similarity=0.584  Sum_probs=54.1

Q ss_pred             EEEEEecCccEEeecCCC-------------CCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccc
Q 013755          215 SYIARLEDGTVFEKKGYD-------------GEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAK  279 (437)
Q Consensus       215 ~y~~~~~~g~~fd~~~~~-------------~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~  279 (437)
                      ||++++.||++||++ +.             ...|+.|.+|.+.+++||+.+|.+|++||+..|.+||+.+||..+..
T Consensus        11 ~Y~g~~~dG~~fdss-~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aYG~~~~~   87 (151)
T 1ix5_A           11 DYIGKLESGDVFDTS-IEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAYGNRNEM   87 (151)
T ss_dssp             CCEECCTTSCCCEES-CHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSSCSCCST
T ss_pred             EEEEEECCCCEEEec-chhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHCCCCCcc
Confidence            556666677777777 42             34799999999999999999999999999999999999999976543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.06  E-value=7.6e-10  Score=104.30  Aligned_cols=114  Identities=14%  Similarity=0.088  Sum_probs=84.4

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC-------------CChHHHHHHHhhh----HHHhhhHHHHHH--
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-------------FVDDEQKLVKSLR----VSCWLNSAACCL--  378 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~-------------~~~~~~~~~~~~~----~~~~~nla~~~~--  378 (437)
                      ...+...|..+...|++++|+..|++     |.+..             -.++....+....    .....+++.++.  
T Consensus       101 ~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l  175 (291)
T 3mkr_A          101 TTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSL  175 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH
Confidence            45688999999999999999999887     21110             0011111111111    112334444433  


Q ss_pred             --hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          379 --KLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       379 --~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                        ..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|++
T Consensus       176 ~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~  235 (291)
T 3mkr_A          176 AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE  235 (291)
T ss_dssp             HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence              3488999999999999999999999999999999999999999999999999999864

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.06  E-value=1.1e-09  Score=99.77  Aligned_cols=68  Identities=16%  Similarity=0.088  Sum_probs=50.6

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      ..+++++|.++.++|++++|+.+++++++.+|.+..+++.+|.++..+|++++|+..|+++++++|++
T Consensus       141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  208 (252)
T 2ho1_A          141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN  208 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence            35567777777777777777777777777777777777777777777777777777777777777655

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.06  E-value=1.1e-10  Score=100.76  Aligned_cols=98  Identities=13%  Similarity=0.125  Sum_probs=85.5

Q ss_pred             HHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHH
Q 013755          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVK  402 (437)
Q Consensus       323 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~  402 (437)
                      ..+..++..|+|++|+..|++++...|.+               ..+++++|.+|..+|++++|+.+|+++++++|+++.
T Consensus        15 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~   79 (177)
T 2e2e_A           15 DPLHQFASQQNPEAQLQALQDKIRANPQN---------------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE   79 (177)
T ss_dssp             TTTCCCC-----CCCCHHHHHHHHHCCSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH
T ss_pred             hhhhhhhhccCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            44566788999999999999999998765               367999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHhccH--HHHHHHHHHHHHhCCCCC
Q 013755          403 ALYRRAQA-YMEIADL--ILAELDIKKAIEADPQNR  435 (437)
Q Consensus       403 a~~~~g~~-~~~lg~~--~~A~~~~~~al~l~P~n~  435 (437)
                      +++.+|.+ +...|++  ++|+..|+++++++|++.
T Consensus        80 ~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~  115 (177)
T 2e2e_A           80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEI  115 (177)
T ss_dssp             HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcH
Confidence            99999999 8899999  999999999999999874

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.06  E-value=1.2e-09  Score=91.39  Aligned_cols=108  Identities=17%  Similarity=0.100  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      ...+..+...|..++..|+|++|+..|++++.+.+....         ......++.++|.+|..+|++++|+.++++++
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   76 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERIAYSNLGNAYIFLGEFETASEYYKKTL   76 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC---------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            455677778888888888888888888888887654321         12234566777777777777777777777777


Q ss_pred             HhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          395 DCDCHN------VKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       395 ~~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      ++.+..      ..+++++|.++..+|++++|+..+++++++.
T Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  119 (164)
T 3ro3_A           77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA  119 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            664432      4567777777777777777777777777653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.06  E-value=6.6e-10  Score=87.52  Aligned_cols=68  Identities=10%  Similarity=0.107  Sum_probs=65.8

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      ..+++++|.+++.+|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            46689999999999999999999999999999999999999999999999999999999999999987

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.06  E-value=9.9e-10  Score=107.03  Aligned_cols=67  Identities=19%  Similarity=0.078  Sum_probs=42.9

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      .++.++|.+|.++|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus       238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  304 (388)
T 1w3b_A          238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH  304 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence            4555666666666666666666666666666666666666666666666666666666666666654

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=99.06  E-value=9.6e-11  Score=114.48  Aligned_cols=91  Identities=22%  Similarity=0.469  Sum_probs=76.1

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCC
Q 013755           60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLP  139 (437)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~  139 (437)
                      +.++.||.|+|||+++. ||+.|+++.  +.|+.|.+|.|++||||+++|.||++|++++|++.+|.  .||..+    .
T Consensus       159 ~~~~~gD~V~i~y~g~~-dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~--dy~~~~----l  229 (392)
T 1t11_A          159 EAAENGKRVSIDFVGSI-DGVEFEGGK--AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPE--DYHAEN----L  229 (392)
T ss_dssp             CCCCTTCEEEEEEEEES-SSSCCTTCE--EEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCT--TCSCTT----T
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEccCCC--ccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCcc--ccccCC----C
Confidence            57999999999999995 999999984  37899999999999999999999999999999444454  466543    2


Q ss_pred             CCCcEEEEEEEeceeeeecc
Q 013755          140 PNSVVQFEVELVSWITVVDL  159 (437)
Q Consensus       140 ~~~~~~f~v~l~~~~~~~d~  159 (437)
                      ++.++.|+|+|.++....-+
T Consensus       230 aGk~~~F~V~v~~i~~~~lp  249 (392)
T 1t11_A          230 KGKAAKFAIKVNKVEARELP  249 (392)
T ss_dssp             SSCEEEECCCEEEEEEEECC
T ss_pred             CCCeEEEEEEEEEEEcCCCC
Confidence            67899999999998754433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.05  E-value=1.7e-09  Score=98.36  Aligned_cols=103  Identities=15%  Similarity=0.017  Sum_probs=88.9

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+...|..++..|++++|+..|++++...|..               ..++.++|.++..+|++++|+..++++++.+
T Consensus       141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  205 (252)
T 2ho1_A          141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ---------------PSVALEMADLLYKEREYVPARQYYDLFAQGG  205 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            3455666777777777777777777777765543               3678999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |.+..+++.++.++..+|++++|+..+++++++.|+++
T Consensus       206 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~  243 (252)
T 2ho1_A          206 GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL  243 (252)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred             cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence            99999999999999999999999999999999999875

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.05  E-value=1.6e-09  Score=96.27  Aligned_cols=102  Identities=17%  Similarity=0.056  Sum_probs=77.6

Q ss_pred             HHHHhhHHHhC-CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          321 KKEEGNLLFKN-GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       321 ~~~~g~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      +...|..++.. |++++|+..|++++. .+..+            ....+++++|.++..+|++++|+..++++++.+|.
T Consensus        79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  145 (225)
T 2vq2_A           79 NNNYGWFLCGRLNRPAESMAYFDKALA-DPTYP------------TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ  145 (225)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCS------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCc------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            34444555555 555555555555554 11111            12467889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCC
Q 013755          400 NVKALYRRAQAYMEIADLILAELDIKKAIEADP-QNR  435 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P-~n~  435 (437)
                      +..+++.+|.++..+|++++|+..|+++++++| ++.
T Consensus       146 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  182 (225)
T 2vq2_A          146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA  182 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCH
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence            999999999999999999999999999999988 653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.05  E-value=9.2e-10  Score=104.37  Aligned_cols=109  Identities=14%  Similarity=0.076  Sum_probs=90.0

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..+...|..+.. |+|++|+.+|++|+.+.+....         ......++.|+|.+|.++|+|++|+.+|+++++
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  183 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER---------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKS  183 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC---------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345677788888888 8899999999999888765321         123457899999999999999999999999999


Q ss_pred             hCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          396 CDCHN------VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       396 ~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +.|.+      ..+++.+|.++..+|++++|+..|++++ ++|+..
T Consensus       184 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          184 MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            87654      3578899999999999999999999999 999764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.04  E-value=1.7e-09  Score=105.42  Aligned_cols=110  Identities=14%  Similarity=-0.011  Sum_probs=98.0

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..+...|..++..|+|++|+..|++|+.+.+....         ......+++|+|.+|..+|++++|+.+++++++
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            56778889999999999999999999999998764322         124567899999999999999999999999999


Q ss_pred             -----hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          396 -----CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       396 -----~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                           .+|....+++++|.+|..+|++++|+..+++++++.+..
T Consensus       251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  294 (378)
T 3q15_A          251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR  294 (378)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred             HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence                 788889999999999999999999999999999997653

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.04  E-value=2.7e-09  Score=98.14  Aligned_cols=69  Identities=12%  Similarity=-0.001  Sum_probs=61.7

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+...|..++..|+|++|+..|++++...|...               .+++++|.+|.++|++++|+..++++++++
T Consensus        77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  141 (275)
T 1xnf_A           77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---------------YAHLNRGIALYYGGRDKLAQDDLLAFYQDD  141 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc---------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            45678899999999999999999999999987653               678999999999999999999999999999


Q ss_pred             CCCH
Q 013755          398 CHNV  401 (437)
Q Consensus       398 p~~~  401 (437)
                      |++.
T Consensus       142 ~~~~  145 (275)
T 1xnf_A          142 PNDP  145 (275)
T ss_dssp             TTCH
T ss_pred             CCCh
Confidence            8875

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.04  E-value=1.6e-09  Score=102.11  Aligned_cols=102  Identities=21%  Similarity=0.270  Sum_probs=94.8

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+...|..++..|++++|+..|++++...|..               ..++.++|.++..+|++++|+..++++++.+
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  236 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD---------------AQLWNKLGATLANGNRPQEALDAYNRALDIN  236 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            4567788999999999999999999999997754               3678999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      |++..+++.+|.++..+|++++|+..|+++++++|++
T Consensus       237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  273 (327)
T 3cv0_A          237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG  273 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            9999999999999999999999999999999999983

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.04  E-value=2.3e-09  Score=90.62  Aligned_cols=99  Identities=12%  Similarity=0.059  Sum_probs=87.7

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+...|..++..|+|++|+..|++++...|..               ..+++++|.++..+|++++|+.+++++++++
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~  111 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---------------IKGYYRRAASNMALGKFRAALRDYETVVKVK  111 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            4567889999999999999999999999998764               3679999999999999999999999999999


Q ss_pred             CCCHHHHHHHHH--HHHHhccHHHHHHHHHHHHHhC
Q 013755          398 CHNVKALYRRAQ--AYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       398 p~~~~a~~~~g~--~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      |.+..++..++.  .+..+|++++|+..+.++..+.
T Consensus       112 p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A          112 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence            999988855544  4889999999999999987653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.03  E-value=2.5e-09  Score=89.35  Aligned_cols=110  Identities=18%  Similarity=0.167  Sum_probs=93.5

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..+...|..++..|+|++|+..|++++.+.+....         ......+++++|.++..+|++++|+.+++++++
T Consensus        47 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  117 (164)
T 3ro3_A           47 AERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  117 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34567888999999999999999999999998865432         123467799999999999999999999999998


Q ss_pred             hCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          396 CDCH------NVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       396 ~~p~------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      +.+.      ...+++.+|.++..+|++++|+..+++++++....
T Consensus       118 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  162 (164)
T 3ro3_A          118 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV  162 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence            7432      25789999999999999999999999999986654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.02  E-value=3e-10  Score=94.67  Aligned_cols=70  Identities=6%  Similarity=-0.065  Sum_probs=66.9

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ...++++|.++++.|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+..|++++.++|+++.
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   87 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR   87 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence            4668899999999999999999999999999999999999999999999999999999999999999863

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.02  E-value=1.1e-09  Score=106.97  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH
Q 013755          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (437)
Q Consensus       314 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  393 (437)
                      ....+..+...|..+...|+|++|+..|++|+.+.+....         ......+++|+|.+|..+|++++|+.+++++
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  250 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA  250 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3455678889999999999999999999999999876432         1334678999999999999999999999999


Q ss_pred             HH-----hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          394 LD-----CD-CHNVKALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       394 l~-----~~-p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      ++     .+ |....+++++|.+|..+|++++|+..|++++++.+
T Consensus       251 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            99     46 78899999999999999999999999999998854

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.02  E-value=6.5e-10  Score=105.42  Aligned_cols=110  Identities=13%  Similarity=0.050  Sum_probs=92.1

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..+.+.|..+...|+|++|+..|++|+.+.+.....         .....++.|+|.+|.. |++++|+.+|++|++
T Consensus        74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---------~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~  143 (307)
T 2ifu_A           74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP---------DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA  143 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH---------HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence            446677788888888899999999999999887543321         2235788999999999 999999999999999


Q ss_pred             hCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          396 CDCHN------VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       396 ~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +.|..      ..+++++|.+|..+|+|++|+..|++++++.|++.
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  189 (307)
T 2ifu_A          144 VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME  189 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence            87654      57899999999999999999999999999877553

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.01  E-value=2.2e-09  Score=101.28  Aligned_cols=100  Identities=16%  Similarity=0.083  Sum_probs=52.4

Q ss_pred             HHHHHHhhHHHhCC-cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          319 GRKKEEGNLLFKNG-KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       319 ~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ..+...|..++..| ++++|+..|++++...|...               .++.++|.++..+|++++|+..++++++++
T Consensus        91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  155 (330)
T 3hym_B           91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG---------------PAWIAYGHSFAVESEHDQAMAAYFTAAQLM  155 (330)
T ss_dssp             HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence            34556667777777 77777777777776655432               234444444444444444444444444444


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      |++..+++.+|.+|..+|++++|+..|+++++++|+
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  191 (330)
T 3hym_B          156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE  191 (330)
T ss_dssp             TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC
Confidence            444444444444444444444444444444444443

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.00  E-value=1.3e-09  Score=92.31  Aligned_cols=57  Identities=18%  Similarity=0.381  Sum_probs=51.3

Q ss_pred             EEEEEEecCccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccc
Q 013755          214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE  277 (437)
Q Consensus       214 v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~  277 (437)
                      ++|+++ .||++||++ +     +.|.+|.+++++||+.+|.+|++||+..|.+||..+||..+
T Consensus        11 v~Y~g~-~dG~~fdss-~-----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~   67 (158)
T 3cgm_A           11 IRYTLQ-VEGEVLDQG-E-----LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHD   67 (158)
T ss_dssp             EEEEEE-ETTEEEEEE-E-----EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCC
T ss_pred             EEEEEE-ECCEEEEee-E-----EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCCC
Confidence            466667 688889988 3     99999999999999999999999999999999999999764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.00  E-value=1.8e-09  Score=87.60  Aligned_cols=69  Identities=19%  Similarity=0.187  Sum_probs=66.4

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ...+.++|.++++.|+|++|+..|+++++++|+++.+++++|.+|..+|+|++|+.+|+++++++|++.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~   72 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV   72 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence            466899999999999999999999999999999999999999999999999999999999999999875

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.99  E-value=2.4e-09  Score=81.05  Aligned_cols=69  Identities=35%  Similarity=0.458  Sum_probs=66.3

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ..+++++|.++..+++|++|+.+|+++++++|++..+++++|.++..+|++++|+..|+++++++|++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~   77 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA   77 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH
Confidence            467899999999999999999999999999999999999999999999999999999999999999875

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.99  E-value=2.5e-09  Score=100.44  Aligned_cols=107  Identities=14%  Similarity=0.105  Sum_probs=90.1

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      .+..+...|..++..|+|++|+..|++|+.+....+..        ......+++|+|.+|.++|+|++|+.++++++++
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--------ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            46788899999999999999999999999775443321        1122368999999999999999999999999988


Q ss_pred             CCC------CHHHHHHHHHHHHHhccHHHH-HHHHHHHHHhC
Q 013755          397 DCH------NVKALYRRAQAYMEIADLILA-ELDIKKAIEAD  431 (437)
Q Consensus       397 ~p~------~~~a~~~~g~~~~~lg~~~~A-~~~~~~al~l~  431 (437)
                      .+.      ...+++++|.+|..+|++++| ..+|++|+.+.
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            643      278899999999999999999 78899999764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.99  E-value=2.7e-09  Score=106.60  Aligned_cols=113  Identities=16%  Similarity=0.093  Sum_probs=89.7

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..+...|..++..|+|++|+..|++|+++.+.....      ........+|.|+|.+|..+|++++|+.++++++++.
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~------~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~  124 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD------QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC  124 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG------GCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc------ccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            4567789999999999999999999999986532110      0001124668899999999999999999999999863


Q ss_pred             --------CCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHhCCCCCC
Q 013755          398 --------CHNVKALYRRAQAYMEIA--DLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       398 --------p~~~~a~~~~g~~~~~lg--~~~~A~~~~~~al~l~P~n~~  436 (437)
                              +..+.++..+|.++..++  +|++|+.+|++|++++|+|++
T Consensus       125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~  173 (472)
T 4g1t_A          125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE  173 (472)
T ss_dssp             HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence                    355788899998887664  799999999999999998864

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.97  E-value=2.3e-09  Score=82.94  Aligned_cols=67  Identities=21%  Similarity=0.256  Sum_probs=64.1

Q ss_pred             hhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVK-ALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~-a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      .+++|.+++++++|++|+..|+++++.+|+++. +++++|.+|..+|++++|+..|+++++++|++..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~   70 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA   70 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence            468999999999999999999999999999999 9999999999999999999999999999999863

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.95  E-value=4e-09  Score=106.88  Aligned_cols=103  Identities=13%  Similarity=0.031  Sum_probs=80.1

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+...|..++..|+|++|+..|++++...|...               .++.++|.++..+|++++|+..++++++.+
T Consensus       310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  374 (537)
T 3fp2_A          310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV---------------YPYIQLACLLYKQGKFTESEAFFNETKLKF  374 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34566677777777777777777777777766543               557788888888888888888888888888


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |+++.+++.+|.++..+|++++|+..|+++++++|++.
T Consensus       375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  412 (537)
T 3fp2_A          375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE  412 (537)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence            88888888888888888888888888888888877654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.94  E-value=3e-09  Score=99.95  Aligned_cols=108  Identities=16%  Similarity=0.045  Sum_probs=89.1

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh-
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC-  396 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-  396 (437)
                      ...+...|..++..++|++|+..|++|+.+.......         .....+++++|.+|..+|+|++|+.+|+++++. 
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  185 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQL  185 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4455668999999999999999999999975543322         123467999999999999999999999999953 


Q ss_pred             ------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          397 ------DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       397 ------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                            .+....+++++|.+|..+|+|++|+.++++|+++.+..
T Consensus       186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~  229 (293)
T 3u3w_A          186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI  229 (293)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence                  22335789999999999999999999999999987544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.94  E-value=6.6e-10  Score=112.25  Aligned_cols=103  Identities=12%  Similarity=0.094  Sum_probs=89.8

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..+...|..+++.|+|++|+..|++|+++.|..               ..+++++|.+|.++|++++|+.+++++++++
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~  104 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---------------IKGYYRRAASNMALGKFRAALRDYETVVKVK  104 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            5677889999999999999999999999997764               3679999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHH--HHHhccHHHHHHHHH-----------HHHHhCCCCC
Q 013755          398 CHNVKALYRRAQA--YMEIADLILAELDIK-----------KAIEADPQNR  435 (437)
Q Consensus       398 p~~~~a~~~~g~~--~~~lg~~~~A~~~~~-----------~al~l~P~n~  435 (437)
                      |++..+++.++.+  +..+|++++|++.++           +++.++|+..
T Consensus       105 p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~  155 (477)
T 1wao_1          105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS  155 (477)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence            9999999999999  889999999999999           8888887654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.93  E-value=4e-09  Score=85.44  Aligned_cols=69  Identities=17%  Similarity=0.060  Sum_probs=65.5

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ..++++|.++++.|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++.+
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~   86 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA   86 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            347889999999999999999999999999999999999999999999999999999999999998753

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.93  E-value=5.6e-09  Score=95.91  Aligned_cols=108  Identities=19%  Similarity=0.094  Sum_probs=92.9

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..+...|..++..|+|++|+..|++++.+.......+       ......++.++|.+|..+|++++|+.++++++.
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  113 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE  113 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4577888999999999999999999999999863210000       123467899999999999999999999999999


Q ss_pred             h--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          396 C--------DCHNVKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       396 ~--------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      +        +|....+++++|.+|..+|++++|+..|++++++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B          114 IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8        5777899999999999999999999999999998

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.92  E-value=4.2e-09  Score=105.93  Aligned_cols=107  Identities=14%  Similarity=0.123  Sum_probs=90.2

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh---ccCHHHHHHHHHHHHHh
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK---LKDYQGAIELCSKVLDC  396 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~---~~~~~~Ai~~~~~al~~  396 (437)
                      .+...|..++..|++++|+..|++++...|......         ....+++++|.++..   +|++++|+..+++++++
T Consensus       374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~  444 (514)
T 2gw1_A          374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY---------VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL  444 (514)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS---------SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH---------HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence            455667777777777777777777777776654210         012379999999999   99999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +|++..+++.+|.+|..+|++++|+..|+++++++|+++
T Consensus       445 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  483 (514)
T 2gw1_A          445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME  483 (514)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred             CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence            999999999999999999999999999999999999875

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.92  E-value=1.1e-08  Score=105.21  Aligned_cols=108  Identities=19%  Similarity=0.186  Sum_probs=83.9

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  400 (437)
                      +...|..+++.|++++|+..|++++...|......        .....++.++|.+|.+.|++++|+..++++++++|++
T Consensus       478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  549 (597)
T 2xpi_A          478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE--------KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND  549 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS--------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch--------hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            44455555555555555555555555543211000        0014689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +.+++.+|.+|..+|++++|+..|+++++++|++++
T Consensus       550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~  585 (597)
T 2xpi_A          550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM  585 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence            999999999999999999999999999999999853

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.91  E-value=3.2e-09  Score=89.70  Aligned_cols=69  Identities=16%  Similarity=0.128  Sum_probs=64.2

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHhccHHHHHHHHHHHHHh----
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH-------NVK-----ALYRRAQAYMEIADLILAELDIKKAIEA----  430 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-------~~~-----a~~~~g~~~~~lg~~~~A~~~~~~al~l----  430 (437)
                      +..+.++|.+++++|+|++|+..|++||+++|+       +..     +|+++|.++..+|+|++|+.+|++||++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            456889999999999999999999999999999       544     9999999999999999999999999999    


Q ss_pred             ---CCCCC
Q 013755          431 ---DPQNR  435 (437)
Q Consensus       431 ---~P~n~  435 (437)
                         +|++.
T Consensus        91 ~e~~pd~~   98 (159)
T 2hr2_A           91 GELNQDEG   98 (159)
T ss_dssp             CCTTSTHH
T ss_pred             ccCCCchH
Confidence               99864

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.91  E-value=2e-08  Score=94.19  Aligned_cols=107  Identities=16%  Similarity=0.032  Sum_probs=87.6

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH--
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL--  394 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al--  394 (437)
                      ....+...|..+...|+|++|+..|++|+...+.....         .....+++++|.+|..+|+|++|+.+|++|+  
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~  184 (293)
T 2qfc_A          114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQ  184 (293)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34445667888888889999999999998876543221         1135689999999999999999999999999  


Q ss_pred             -HhCCCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          395 -DCDCHNV----KALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       395 -~~~p~~~----~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                       +..|++.    .+++++|.+|..+|+|++|+..|++++++.+
T Consensus       185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence             5566543    6999999999999999999999999998864

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.91  E-value=6.3e-09  Score=91.13  Aligned_cols=106  Identities=11%  Similarity=0.092  Sum_probs=83.5

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      .+..+...|..++..|+|++|+..|++++.+......         ......+++++|.+|..+|++++|+.++++++++
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL   95 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4677888999999999999999999999997654321         1234567888888888888888888888888887


Q ss_pred             ---CCC----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          397 ---DCH----NVKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       397 ---~p~----~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                         .++    ...+++++|.++..+|++++|+..+++++.+.
T Consensus        96 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A           96 LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence               332    24668888888888888888888888888764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.91  E-value=1e-08  Score=99.92  Aligned_cols=109  Identities=18%  Similarity=0.099  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH
Q 013755          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (437)
Q Consensus       314 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  393 (437)
                      ....+..+...|..++..|++++|+..|++|+.+.+.....        ......+++++|.+|..+|+|++|+.+++++
T Consensus       139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  210 (383)
T 3ulq_A          139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------NIRLLQCHSLFATNFLDLKQYEDAISHFQKA  210 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34567888899999999999999999999999988765431        1234678999999999999999999999999


Q ss_pred             HHhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          394 LDCDCHN------VKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       394 l~~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      +++.+..      ..+++++|.+|..+|++++|+.+|++|+++
T Consensus       211 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  253 (383)
T 3ulq_A          211 YSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV  253 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            9886543      368999999999999999999999999995

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.91  E-value=5.5e-09  Score=89.00  Aligned_cols=70  Identities=24%  Similarity=0.230  Sum_probs=67.0

Q ss_pred             hHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       366 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ....++++|.++++.++|++|+.+|+++++++|+++.+++++|.+|..+|+|++|+.+|+++++++|++.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~   79 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS   79 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            3567899999999999999999999999999999999999999999999999999999999999999874

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.89  E-value=9.8e-09  Score=94.24  Aligned_cols=111  Identities=17%  Similarity=0.070  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      ...+..+...|..++..|+|++|+..|++++.+........       ......++.++|.+|..+|++++|+.++++++
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  154 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL  154 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34567788999999999999999999999999853210000       02245789999999999999999999999999


Q ss_pred             Hh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          395 DC--------DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       395 ~~--------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      ++        +|....+++.+|.+|..+|++++|+..|++++++.|
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH  200 (283)
T ss_dssp             HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            99        777789999999999999999999999999998743

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.88  E-value=7e-09  Score=91.30  Aligned_cols=98  Identities=11%  Similarity=0.032  Sum_probs=82.4

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      ....+...|..++..|+|++|+..|++++.+.|..               ..+++++|.+|..+++|++|+.+|++++++
T Consensus        87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  151 (198)
T 2fbn_A           87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN---------------VKALYKLGVANMYFGFLEEAKENLYKAASL  151 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            35778899999999999999999999999997764               367999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHH-HHHHHHHH
Q 013755          397 DCHNVKALYRRAQAYMEIADLILAE-LDIKKAIE  429 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~~~A~-~~~~~al~  429 (437)
                      +|++..++..++.++..++++.++. ..|++.+.
T Consensus       152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999888 45555543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.87  E-value=6.4e-09  Score=97.18  Aligned_cols=111  Identities=20%  Similarity=0.156  Sum_probs=92.8

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..+...|..++..|++++|+..|++++..........       ......++.++|.+|..+|++++|+.+++++++
T Consensus       151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD-------DPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT-------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4456678899999999999999999999999854321110       022357789999999999999999999999997


Q ss_pred             h-------------------------------------------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 013755          396 C-------------------------------------------------DCHNVKALYRRAQAYMEIADLILAELDIKK  426 (437)
Q Consensus       396 ~-------------------------------------------------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~  426 (437)
                      +                                                 +|.+..+++.+|.+|..+|++++|+..|++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  303 (311)
T 3nf1_A          224 RAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA  303 (311)
T ss_dssp             HHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4                                                 466678899999999999999999999999


Q ss_pred             HHHhCCC
Q 013755          427 AIEADPQ  433 (437)
Q Consensus       427 al~l~P~  433 (437)
                      ++++.|+
T Consensus       304 al~l~~~  310 (311)
T 3nf1_A          304 AMRSRKQ  310 (311)
T ss_dssp             HHHHHC-
T ss_pred             HHHHhhc
Confidence            9999875

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.87  E-value=7e-09  Score=97.50  Aligned_cols=107  Identities=16%  Similarity=0.124  Sum_probs=93.8

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      .+..+...|..++..|+|++|+..|++++...|.+.           .....++.++|.+|..+|++++|+.++++++++
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   72 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   72 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            356778899999999999999999999999866542           234578999999999999999999999999987


Q ss_pred             ------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          397 ------DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       397 ------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                            .|....+++.+|.+|..+|++++|+..|++++++.|..
T Consensus        73 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  116 (338)
T 3ro2_A           73 ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL  116 (338)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence                  45567899999999999999999999999999986644

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.86  E-value=1.1e-08  Score=100.15  Aligned_cols=106  Identities=13%  Similarity=0.079  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      ...+..+...|..++..|+|++|+..|++++...|.+.           .....+++++|.+|..+|++++|+.++++++
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL-----------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh-----------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            46678888999999999999999999999999976542           2345689999999999999999999999999


Q ss_pred             Hh------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          395 DC------DCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       395 ~~------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      ++      +|....+++.+|.+|..+|++++|+..|++++++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  156 (411)
T 4a1s_A          114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA  156 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            98      57778999999999999999999999999999874

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.85  E-value=2.2e-08  Score=100.94  Aligned_cols=111  Identities=14%  Similarity=0.036  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHH
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK  392 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~  392 (437)
                      +.++.+....+.+..+..+|+|++|+..|+++|.+.......+       ....+.++.|||.+|..+|+|++|+.+|++
T Consensus       304 ~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~  376 (490)
T 3n71_A          304 EMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT-------NLYVLRLLSIASEVLSYLQAYEEASHYARR  376 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            4556677778888889999999999999999999865422111       123467899999999999999999999999


Q ss_pred             HHHh-----CCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          393 VLDC-----DCHN---VKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       393 al~~-----~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      +|++     -|++   ...++++|.+|..+|+|++|+..|++|+++
T Consensus       377 aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          377 MVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             HHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            9976     3444   577999999999999999999999999975

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.84  E-value=1.5e-08  Score=81.43  Aligned_cols=85  Identities=15%  Similarity=0.038  Sum_probs=78.2

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+...|..++..|++++|+..|.+++...|.+               ..+++++|.++..++++++|+.+++++++++
T Consensus        46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  110 (131)
T 2vyi_A           46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY---------------SKAYGRMGLALSSLNKHVEAVAYYKKALELD  110 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            4567889999999999999999999999987754               3678999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccH
Q 013755          398 CHNVKALYRRAQAYMEIADL  417 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~  417 (437)
                      |++..+++.+|.++..+|++
T Consensus       111 p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A          111 PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHTTC
T ss_pred             ccchHHHHHHHHHHHHHhcC
Confidence            99999999999999999875

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.83  E-value=7.1e-09  Score=100.77  Aligned_cols=106  Identities=16%  Similarity=0.122  Sum_probs=93.4

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh-
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC-  396 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-  396 (437)
                      +..+...|..++..|+|++|+..|++++...|.+.           .....+++++|.+|..+|++++|+.++++++.+ 
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   77 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   77 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH-----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            56778899999999999999999999999976542           234578999999999999999999999999987 


Q ss_pred             -----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          397 -----DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       397 -----~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                           .|....+++.+|.+|..+|++++|+..|++++++.|..
T Consensus        78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  120 (406)
T 3sf4_A           78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL  120 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence                 44557899999999999999999999999999987643

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.81  E-value=1.9e-08  Score=82.24  Aligned_cols=69  Identities=16%  Similarity=0.123  Sum_probs=66.5

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ...++++|.+++.+++|++|+..|++++.++|+++.+++++|.++..+|++++|+..|+++++++|++.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~   77 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV   77 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH
Confidence            577899999999999999999999999999999999999999999999999999999999999999874

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.81  E-value=1.7e-08  Score=81.67  Aligned_cols=84  Identities=19%  Similarity=0.148  Sum_probs=77.2

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+...|..++..|++++|+..|++++...|..               ..+++++|.++.+++++++|+.+++++++++
T Consensus        50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  114 (133)
T 2lni_A           50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF---------------IKGYTRKAAALEAMKDYTKAMDVYQKALDLD  114 (133)
T ss_dssp             HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            4667889999999999999999999999997764               3679999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcc
Q 013755          398 CHNVKALYRRAQAYMEIAD  416 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~  416 (437)
                      |.+..+++.++.++..+|+
T Consensus       115 p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A          115 SSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             GGGTHHHHHHHHHHHHHTC
T ss_pred             CCchHHHHHHHHHHHHhcC
Confidence            9999999999999998774

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.81  E-value=2e-08  Score=78.42  Aligned_cols=66  Identities=14%  Similarity=0.091  Sum_probs=64.3

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      .+++++|.++..++++++|+.+++++++++|.+..+++.+|.++..+|++++|+..|+++++++|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            568999999999999999999999999999999999999999999999999999999999999998

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.79  E-value=3.2e-08  Score=96.30  Aligned_cols=108  Identities=16%  Similarity=0.096  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      ...+..+...|..++..|+++.|+..|++|+.+.+.....        ......+++++|.+|..+|+|++|+.++++|+
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  209 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL  209 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4567778888888899999999999999998887754432        12346789999999999999999999999999


Q ss_pred             HhCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          395 DCDCH------NVKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       395 ~~~p~------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      ++.+.      ...+++++|.+|..+|++++|+..|++|+++
T Consensus       210 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~  251 (378)
T 3q15_A          210 ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV  251 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            87431      2478999999999999999999999999984

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.79  E-value=2e-08  Score=97.50  Aligned_cols=109  Identities=16%  Similarity=0.092  Sum_probs=79.8

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..+...|..++..|+|++|+..|++++.+.+.....         .....++.++|.+|..+|++++|+.++++++.
T Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  255 (406)
T 3sf4_A          185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERRAYSNLGNAYIFLGEFETASEYYKKTLL  255 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            345567888999999999999999999999987764321         12345677777777777777777777777777


Q ss_pred             hCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          396 CDCHN------VKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       396 ~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      +.|..      ..+++.+|.+|..+|++++|+..|++++++.+.
T Consensus       256 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  299 (406)
T 3sf4_A          256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  299 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence            66554      566777777777777777777777777766443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.78  E-value=2.3e-08  Score=80.12  Aligned_cols=78  Identities=14%  Similarity=0.126  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      ......+...|..++..|+|++|+..|+++++..|.+.               .+++++|.|+.++|++++|+..+++++
T Consensus        24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al   88 (117)
T 3k9i_A           24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ---------------ALRVFYAMVLYNLGRYEQGVELLLKII   88 (117)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch---------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35678889999999999999999999999999988753               679999999999999999999999999


Q ss_pred             HhCCCCHHHHHHH
Q 013755          395 DCDCHNVKALYRR  407 (437)
Q Consensus       395 ~~~p~~~~a~~~~  407 (437)
                      +.+|+++......
T Consensus        89 ~~~p~~~~~~~~~  101 (117)
T 3k9i_A           89 AETSDDETIQSYK  101 (117)
T ss_dssp             HHHCCCHHHHHTH
T ss_pred             HhCCCcHHHHHHH
Confidence            9999998765433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.78  E-value=4.5e-08  Score=97.15  Aligned_cols=108  Identities=16%  Similarity=0.134  Sum_probs=86.2

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+....+.+......|+|++|+..|+++|.+....-..+       ....+..+.|||.+|..+|+|++|+.+|+++|+
T Consensus       296 ~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~  368 (433)
T 3qww_A          296 RYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS-------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK  368 (433)
T ss_dssp             HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh-------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            3444555555666667899999999999999864422111       123467899999999999999999999999997


Q ss_pred             h-----CCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          396 C-----DCHN---VKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       396 ~-----~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      +     -|++   ...|+++|.+|..+|+|++|+..|++|+++
T Consensus       369 i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          369 PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            6     3444   577999999999999999999999999986

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.78  E-value=4e-08  Score=101.08  Aligned_cols=113  Identities=13%  Similarity=-0.028  Sum_probs=60.7

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC------------C-hHHHHHHH------hhhHHHhhhHHHHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF------------V-DDEQKLVK------SLRVSCWLNSAACCL  378 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~-~~~~~~~~------~~~~~~~~nla~~~~  378 (437)
                      ...+...|..+++.|++++|+..|++++...|.+...            . ++......      .....++++++.+|.
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  452 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM  452 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            4456667888888888888888888888876543210            0 00000000      001233445555555


Q ss_pred             hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          379 KLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       379 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      +.|++++|+..++++++.+|.++.+|+.+|.+|...|++++|+..|++++++
T Consensus       453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  504 (597)
T 2xpi_A          453 QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL  504 (597)
T ss_dssp             HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            5555555555555555555555555555555555555555555555555554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.78  E-value=9.9e-09  Score=85.64  Aligned_cols=89  Identities=18%  Similarity=0.197  Sum_probs=76.5

Q ss_pred             cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc---CHHHHHHHHHHHHHhC-C-CCHHHHHHH
Q 013755          333 KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK---DYQGAIELCSKVLDCD-C-HNVKALYRR  407 (437)
Q Consensus       333 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~---~~~~Ai~~~~~al~~~-p-~~~~a~~~~  407 (437)
                      ....+.+.|.+++...+.+               ..+.+++|.|+.+.+   ++++++..++.+++.+ | ++.+++|++
T Consensus        13 ~l~~~~~~y~~e~~~~~~~---------------~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~L   77 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVS---------------KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL   77 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCC---------------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCc---------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHH
Confidence            3456777788877654422               477899999999988   7779999999999999 7 678999999


Q ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          408 AQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       408 g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      |.+|+++++|++|+++++++|+++|+|..
T Consensus        78 Av~~~kl~~Y~~A~~y~~~lL~ieP~n~Q  106 (152)
T 1pc2_A           78 AVGNYRLKEYEKALKYVRGLLQTEPQNNQ  106 (152)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence            99999999999999999999999999853

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.77  E-value=1.7e-08  Score=85.68  Aligned_cols=91  Identities=8%  Similarity=-0.076  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      ...+..+.+.|..+++.|+|++|+..|++++.+.|..               ..+|+++|.+|..+|+|++|+.+|++++
T Consensus        60 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~a~~~~g~~~~~~g~~~~A~~~~~~al  124 (162)
T 3rkv_A           60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN---------------EKALFRRAKARIAAWKLDEAEEDLKLLL  124 (162)
T ss_dssp             HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc---------------hHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence            4456788999999999999999999999999998765               4789999999999999999999999999


Q ss_pred             HhCCCCH-HHHHHHHHHHHHhccHHHH
Q 013755          395 DCDCHNV-KALYRRAQAYMEIADLILA  420 (437)
Q Consensus       395 ~~~p~~~-~a~~~~g~~~~~lg~~~~A  420 (437)
                      +++|++. .+...++.+...++++.++
T Consensus       125 ~l~p~~~~~~~~~l~~~~~~~~~~~~~  151 (162)
T 3rkv_A          125 RNHPAAASVVAREMKIVTERRAEKKAD  151 (162)
T ss_dssp             HHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998 6677788888777666543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.77  E-value=8.9e-08  Score=83.65  Aligned_cols=110  Identities=13%  Similarity=0.048  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      ...+..+...|..++..|+|++|+..|++++.+.......        ......+++++|.++..+|++++|+.++++++
T Consensus        63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A           63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED--------PLAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc--------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3456778899999999999999999999999996543311        11345779999999999999999999999999


Q ss_pred             HhCC--CC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          395 DCDC--HN----VKALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       395 ~~~p--~~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      .+.+  .+    ..++..+|.++..+|++++|+..|++++++..
T Consensus       135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            7642  22    35579999999999999999999999998754

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.77  E-value=3.4e-08  Score=96.26  Aligned_cols=93  Identities=14%  Similarity=0.025  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..+.+.|..+++.++|++|+..|++|+++.|..               ..+++++|.+|..+++|++|+.++++|++
T Consensus       271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~  335 (370)
T 1ihg_A          271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN---------------TKALYRRAQGWQGLKEYDQALADLKKAQE  335 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            345677889999999999999999999999987754               47799999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 013755          396 CDCHNVKALYRRAQAYMEIADLILAELD  423 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~  423 (437)
                      ++|++..++..++.++..++++++|...
T Consensus       336 l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          336 IAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.77  E-value=1.9e-08  Score=93.89  Aligned_cols=111  Identities=18%  Similarity=0.104  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      ...+..+...|..++..|+|++|+..|++++.+........       ......++.++|.++..+|++++|+.++++++
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  180 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD-------HPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL  180 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34566788899999999999999999999999862210000       02245779999999999999999999999999


Q ss_pred             Hh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          395 DC--------DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       395 ~~--------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      .+        +|....+++.+|.+|..+|++++|+..|++++++.|
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  226 (311)
T 3nf1_A          181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH  226 (311)
T ss_dssp             HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            98        777788999999999999999999999999998643

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.75  E-value=8.1e-08  Score=88.67  Aligned_cols=63  Identities=14%  Similarity=0.052  Sum_probs=46.1

Q ss_pred             HHHhhhHHHHHHh----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhC
Q 013755          367 VSCWLNSAACCLK----LKDYQGAIELCSKVLDCDCHNVKALYRRAQAYME----IADLILAELDIKKAIEAD  431 (437)
Q Consensus       367 ~~~~~nla~~~~~----~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~  431 (437)
                      ..+++++|.+|..    .+++++|+.+|+++++.+  ++.+++++|.+|..    .+++++|+.+|+++++++
T Consensus        74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~  144 (273)
T 1ouv_A           74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN  144 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence            3566777777777    777777777777777763  67777777777777    777777777777777765

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.75  E-value=2.2e-08  Score=86.39  Aligned_cols=114  Identities=11%  Similarity=0.030  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCCh--------------HHHH------HHHhhhHHHhhhHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD--------------DEQK------LVKSLRVSCWLNSA  374 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~--------------~~~~------~~~~~~~~~~~nla  374 (437)
                      ......+...|..++..|++++|+..|++++...| ++....              +...      ........+++++|
T Consensus        37 P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la  115 (176)
T 2r5s_A           37 QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELA  115 (176)
T ss_dssp             HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHH
Confidence            44567788999999999999999999999988766 321100              0010      11112357889999


Q ss_pred             HHHHhccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755          375 ACCLKLKDYQGAIELCSKVLDCDCHN--VKALYRRAQAYMEIADLILAELDIKKAIE  429 (437)
Q Consensus       375 ~~~~~~~~~~~Ai~~~~~al~~~p~~--~~a~~~~g~~~~~lg~~~~A~~~~~~al~  429 (437)
                      .++..+|++++|+..|+++++.+|++  ..+++++|.++..+|++++|+..|+++|.
T Consensus       116 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          116 VQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            99999999999999999999999976  66999999999999999999999999985

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.75  E-value=2.4e-08  Score=97.68  Aligned_cols=107  Identities=13%  Similarity=0.110  Sum_probs=72.0

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      .+..+...|..++..|+|++|+..|++++.+.+.....         .....+++++|.+|..+|++++|+.++++++.+
T Consensus       222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  292 (411)
T 4a1s_A          222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR---------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL  292 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            34567788999999999999999999999987653321         112345666666666666666666666666666


Q ss_pred             CCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          397 DCHN------VKALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       397 ~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      .+..      ..+++.+|.+|..+|++++|+..|++++.+.+
T Consensus       293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  334 (411)
T 4a1s_A          293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ  334 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            5533      45566666666666666666666666665543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.75  E-value=1.2e-07  Score=74.50  Aligned_cols=83  Identities=18%  Similarity=0.095  Sum_probs=70.8

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..+...|..+|..++|..|+..|++|++..+.....        ......++.++|.||+++|+++.|+.+++++++++
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~--------~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIS--------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC--------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC--------cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            4456889999999999999999999999987543211        01245778999999999999999999999999999


Q ss_pred             CCCHHHHHHHH
Q 013755          398 CHNVKALYRRA  408 (437)
Q Consensus       398 p~~~~a~~~~g  408 (437)
                      |++..++.+++
T Consensus        77 P~~~~~~~n~~   87 (104)
T 2v5f_A           77 PEHQRANGNLK   87 (104)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCHHHHhhHH
Confidence            99999988887

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.75  E-value=4.7e-08  Score=90.71  Aligned_cols=101  Identities=9%  Similarity=-0.049  Sum_probs=87.2

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC--
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD--  397 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~--  397 (437)
                      ..+..|..+++.++|++|+..|++++...+.             .+...+++++|.++..+|++++|+.+|++++...  
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~-------------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~  203 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK-------------FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG  203 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc-------------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence            7788999999999999999999876554210             1124579999999999999999999999999654  


Q ss_pred             CC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          398 CH-NVKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       398 p~-~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      |. .+.+++++|.|+..+|+.++|+..|++++..+|+
T Consensus       204 P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            65 6789999999999999999999999999999997

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.74  E-value=4.6e-08  Score=91.83  Aligned_cols=106  Identities=19%  Similarity=0.177  Sum_probs=76.1

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      .+...|..++..|++++|+..|++++.+.+....         ......++.++|.++..+|++++|+.++++++.+.+.
T Consensus       225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  295 (338)
T 3ro2_A          225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  295 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc---------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence            4555666666666666666666666666544321         1223567888999999999999999999999887553


Q ss_pred             C------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          400 N------VKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       400 ~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      .      ..+++.+|.+|..+|++++|+..|++++++.+..
T Consensus       296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  336 (338)
T 3ro2_A          296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV  336 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred             cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence            2      4688899999999999999999999999887754

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.73  E-value=5.2e-08  Score=92.13  Aligned_cols=101  Identities=13%  Similarity=0.130  Sum_probs=81.6

Q ss_pred             HHHHHHhhHHH-------hCCcH-------HHHHHHHHHHHH-hhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCH
Q 013755          319 GRKKEEGNLLF-------KNGKY-------ERAGKKYNKAAD-CVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY  383 (437)
Q Consensus       319 ~~~~~~g~~~~-------~~g~~-------~~A~~~y~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~  383 (437)
                      ..+...|..+.       +.|++       ++|+..|++|+. +.|..               ..+|.++|.++.++|++
T Consensus        51 ~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~---------------~~~~~~~~~~~~~~~~~  115 (308)
T 2ond_A           51 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---------------MLLYFAYADYEESRMKY  115 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC---------------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHhcCCH
Confidence            34555555554       35775       999999999999 56654               35688888888888999


Q ss_pred             HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          384 QGAIELCSKVLDCDCHNVK-ALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       384 ~~Ai~~~~~al~~~p~~~~-a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      ++|+..|+++++++|.++. +|..+|.++..+|++++|+..|++|++++|.+
T Consensus       116 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~  167 (308)
T 2ond_A          116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred             HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Confidence            9999999999998888876 88888888888888888888888888888765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.72  E-value=3.2e-08  Score=98.71  Aligned_cols=118  Identities=9%  Similarity=0.009  Sum_probs=84.0

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCCh------------------------H----HH----------
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD------------------------D----EQ----------  359 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~------------------------~----~~----------  359 (437)
                      ...+...|..+...|++++|+..|++|++..|.......                        .    ..          
T Consensus       247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  326 (472)
T 4g1t_A          247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA  326 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            445678899999999999999999999998876431100                        0    00          


Q ss_pred             HHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHH-HHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          360 KLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVK---ALYRRAQA-YMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       360 ~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~---a~~~~g~~-~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .........+++++|.+|..+++|++|+.+|+++|+++|++..   .++++|.. +..+|++++|+..|++|++++|++.
T Consensus       327 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~  406 (472)
T 4g1t_A          327 DEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR  406 (472)
T ss_dssp             HHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred             hhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence            0011112335677888888888888888888888888876643   35666654 4577888888888888888888763

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.71  E-value=7.3e-08  Score=75.82  Aligned_cols=69  Identities=22%  Similarity=0.206  Sum_probs=65.9

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ...++++|.++...++|++|+..+++++..+|.++.+++.+|.++..+|++++|+..++++++++|++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~   72 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG   72 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH
Confidence            466889999999999999999999999999999999999999999999999999999999999999864

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.71  E-value=9.2e-08  Score=90.39  Aligned_cols=112  Identities=12%  Similarity=-0.016  Sum_probs=64.7

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC-CCh---------HHHHHHHh----------hhHHHhhhHHHHHH
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-FVD---------DEQKLVKS----------LRVSCWLNSAACCL  378 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~-~~~---------~~~~~~~~----------~~~~~~~nla~~~~  378 (437)
                      ..+...|..+...|++++|...|++++++.|.+.. .-.         ...+....          ....++...+....
T Consensus       100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~  179 (308)
T 2ond_A          100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY  179 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34556677777777778888888887776654431 000         00000000          00122333333322


Q ss_pred             -hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          379 -KLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       379 -~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                       .+|++++|+..|+++++.+|+++.++..++..+..+|++++|+..|++++..
T Consensus       180 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence             2567777777777777777777777777777777777777777777777764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.71  E-value=7.7e-08  Score=74.81  Aligned_cols=84  Identities=11%  Similarity=0.074  Sum_probs=70.2

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..+...|..++..|+|++|+..|++++++.|...               .+|+++|.||.++|++++|+..+++++++.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV---------------GTYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            56788999999999999999999999999988764               679999999999999999999999999987


Q ss_pred             CC--CHHHHHHHHHHHHHhcc
Q 013755          398 CH--NVKALYRRAQAYMEIAD  416 (437)
Q Consensus       398 p~--~~~a~~~~g~~~~~lg~  416 (437)
                      |.  +..+...+...+...+.
T Consensus        72 ~~~~~~~~~~~l~~~l~~~~~   92 (100)
T 3ma5_A           72 REEGTQKDLSELQDAKLKAEG   92 (100)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHT
T ss_pred             hcCCchhHHHHHHHHHHHccc
Confidence            64  44555555555554443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.70  E-value=2.6e-08  Score=83.95  Aligned_cols=71  Identities=13%  Similarity=0.144  Sum_probs=61.8

Q ss_pred             HHHHHHHHhhHHHhCCcH----------HHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc-----
Q 013755          317 AAGRKKEEGNLLFKNGKY----------ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-----  381 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~----------~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-----  381 (437)
                      .++.+.+.|..+...+++          ++|+..|++||+++|..               ..+|+|+|.+|..+|     
T Consensus        35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~---------------~~A~~~LG~ay~~lg~l~P~   99 (158)
T 1zu2_A           35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK---------------DEAVWCIGNAYTSFAFLTPD   99 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHCCC
T ss_pred             CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc---------------HHHHHHHHHHHHHhcccCcc
Confidence            456778888888888775          59999999999999875               478999999999885     


Q ss_pred             ------CHHHHHHHHHHHHHhCCCCHH
Q 013755          382 ------DYQGAIELCSKVLDCDCHNVK  402 (437)
Q Consensus       382 ------~~~~Ai~~~~~al~~~p~~~~  402 (437)
                            +|++|+.+|++||+++|++..
T Consensus       100 ~~~a~g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A          100 ETEAKHNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             hhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence                  899999999999999999853

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.68  E-value=5.4e-08  Score=78.63  Aligned_cols=68  Identities=25%  Similarity=0.298  Sum_probs=64.5

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV---KALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~---~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .+++++|.+++..|+|++|+..++++++.+|++.   .+++.+|.++..+|+|++|+..|++++.++|+++
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~   73 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD   73 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc
Confidence            3478999999999999999999999999999998   8999999999999999999999999999999873

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.68  E-value=2e-07  Score=85.92  Aligned_cols=63  Identities=17%  Similarity=0.131  Sum_probs=48.6

Q ss_pred             HHHhhhHHHHHHh----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhC
Q 013755          367 VSCWLNSAACCLK----LKDYQGAIELCSKVLDCDCHNVKALYRRAQAYME----IADLILAELDIKKAIEAD  431 (437)
Q Consensus       367 ~~~~~nla~~~~~----~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~  431 (437)
                      ..+++++|.+|..    .+++++|+.+|+++++.+  ++.+++++|.+|..    .+++++|+.+|+++++++
T Consensus       110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~  180 (273)
T 1ouv_A          110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK  180 (273)
T ss_dssp             HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            3567778888887    788888888888888765  57778888888877    788888888888887764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.67  E-value=1.6e-07  Score=74.58  Aligned_cols=83  Identities=29%  Similarity=0.381  Sum_probs=74.7

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+...|..++..|++++|+..|++++...|..               ..+++++|.++..++++++|+..++++++++
T Consensus        43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  107 (125)
T 1na0_A           43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD  107 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            3456788999999999999999999999987654               3568899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhc
Q 013755          398 CHNVKALYRRAQAYMEIA  415 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg  415 (437)
                      |++..+++.+|.++..+|
T Consensus       108 ~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A          108 PNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             TTCHHHHHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHHHhcc
Confidence            999999999999988764

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.65  E-value=1.8e-07  Score=92.75  Aligned_cols=108  Identities=9%  Similarity=0.042  Sum_probs=87.2

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+.........+.++|+|++|+..|+++|......-..+       ....+.++.|+|.+|..+|+|++|+.+|+++|+
T Consensus       285 ~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~  357 (429)
T 3qwp_A          285 KEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI-------NIYQLKVLDCAMDACINLGLLEEALFYGTRTME  357 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT-------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc-------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            3445556666778889999999999999998753321110       123567899999999999999999999999997


Q ss_pred             h-----CCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          396 C-----DCHN---VKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       396 ~-----~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      +     -|++   ...++++|.+|..+|+|++|+..|++|+++
T Consensus       358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            5     2444   467999999999999999999999999975

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.63  E-value=2.6e-07  Score=95.14  Aligned_cols=109  Identities=10%  Similarity=0.052  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHhhHHHhCCcH-HHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccC--------
Q 013755          312 QGKIEAAGRKKEEGNLLFKNGKY-ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD--------  382 (437)
Q Consensus       312 ~~~~~~~~~~~~~g~~~~~~g~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~--------  382 (437)
                      ..+++.............+.++| ++|+..|.+++..+|...               .+|++++.++.++++        
T Consensus        22 ~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~---------------taW~~R~~~l~~l~~~~~~~~~~   86 (567)
T 1dce_A           22 EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFA---------------TLWNCRREVLQHLETEKSPEESA   86 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH---------------HHHHHHHHHHHhcccccchhhhh
Confidence            34444445545555555666666 578999999999988753               678888888888887        


Q ss_pred             --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHhCCCCC
Q 013755          383 --YQGAIELCSKVLDCDCHNVKALYRRAQAYMEIA--DLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       383 --~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg--~~~~A~~~~~~al~l~P~n~  435 (437)
                        +++|+..++++++.+|++..+|+.|+.++..++  +|++|++.++++++++|.|-
T Consensus        87 ~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~  143 (567)
T 1dce_A           87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF  143 (567)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc
Confidence              888888888888888888888888888888888  67888888888888888773

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.61  E-value=8.9e-08  Score=89.72  Aligned_cols=114  Identities=10%  Similarity=-0.096  Sum_probs=91.4

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC-------------CChHHH------HHHHhhhHHHhhhHHHHH
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-------------FVDDEQ------KLVKSLRVSCWLNSAACC  377 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~-------------~~~~~~------~~~~~~~~~~~~nla~~~  377 (437)
                      ....+...|..+...|++++|+..|++++...|....             ...+..      .....-...+++++|.+|
T Consensus       150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l  229 (287)
T 3qou_A          150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQL  229 (287)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            4667888999999999999999999888776653110             000011      111222357899999999


Q ss_pred             HhccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          378 LKLKDYQGAIELCSKVLDCDCHN--VKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       378 ~~~~~~~~Ai~~~~~al~~~p~~--~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      ..+|++++|+..+.++++.+|++  ..++.+++.++..+|+.++|+..|++++..
T Consensus       230 ~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          230 HQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            99999999999999999999999  899999999999999999999999999863

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.61  E-value=1.5e-07  Score=83.94  Aligned_cols=64  Identities=19%  Similarity=0.007  Sum_probs=43.9

Q ss_pred             HHHhhhHHHHHHh----ccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHh
Q 013755          367 VSCWLNSAACCLK----LKDYQGAIELCSKVLDCDC--HNVKALYRRAQAYME----IADLILAELDIKKAIEA  430 (437)
Q Consensus       367 ~~~~~nla~~~~~----~~~~~~Ai~~~~~al~~~p--~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l  430 (437)
                      ..++++||.+|..    .+++.+|+.+++++++..|  .++.+++++|.+|..    .+++++|+.+|++|+++
T Consensus        85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A           85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence            3456677777766    6677777777777777665  346777777777776    66677777777777766

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.61  E-value=1.2e-07  Score=84.56  Aligned_cols=97  Identities=18%  Similarity=0.124  Sum_probs=86.8

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc----CHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK----DYQGAIELCS  391 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~----~~~~Ai~~~~  391 (437)
                      ..+..+...|..++..+++++|+..|++|++..  +               ..++++||.+|.. +    ++++|+.+|+
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~---------------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--D---------------GDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--C---------------HHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            346778899999999999999999999998753  1               3679999999998 7    9999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCC
Q 013755          392 KVLDCDCHNVKALYRRAQAYME----IADLILAELDIKKAIEADP  432 (437)
Q Consensus       392 ~al~~~p~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~P  432 (437)
                      ++++  +.++.+++++|.+|..    .+++++|+.+|++|++..|
T Consensus        78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  120 (212)
T 3rjv_A           78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE  120 (212)
T ss_dssp             HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred             HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence            9965  5799999999999998    8999999999999998877

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.60  E-value=1.8e-07  Score=71.89  Aligned_cols=69  Identities=14%  Similarity=-0.035  Sum_probs=63.0

Q ss_pred             HHHhhhHHHHHHhccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          367 VSCWLNSAACCLKLKD---YQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~---~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ..++..+|.+++..++   ..+|...++++|+++|+++.+++.+|.+++..|+|++|+..++++++.+|.++
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            3668888998876655   79999999999999999999999999999999999999999999999999854

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.60  E-value=3.9e-07  Score=86.10  Aligned_cols=103  Identities=13%  Similarity=-0.089  Sum_probs=92.2

Q ss_pred             HHHHHHHhhHHHhCC--cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHH----Hhc---cCHHHHHH
Q 013755          318 AGRKKEEGNLLFKNG--KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACC----LKL---KDYQGAIE  388 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~~~---~~~~~Ai~  388 (437)
                      ...+..++..+...+  ++++|+..+.++|..+|.+.               .+|+.++.++    ..+   +++++++.
T Consensus        67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y---------------~aW~~R~~iL~~~~~~l~~~~~~~~EL~  131 (306)
T 3dra_A           67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY---------------QIWNYRQLIIGQIMELNNNDFDPYREFD  131 (306)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC---------------HHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH---------------HHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            445677888888888  99999999999999988765               6788888888    666   78999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhccHH--HHHHHHHHHHHhCCCCC
Q 013755          389 LCSKVLDCDCHNVKALYRRAQAYMEIADLI--LAELDIKKAIEADPQNR  435 (437)
Q Consensus       389 ~~~~al~~~p~~~~a~~~~g~~~~~lg~~~--~A~~~~~~al~l~P~n~  435 (437)
                      .|+++|+.+|+|..+|+.|+.++..++.++  ++++.++++++++|.|-
T Consensus       132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~  180 (306)
T 3dra_A          132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNN  180 (306)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999999999999  99999999999999873

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.58  E-value=1.7e-07  Score=96.46  Aligned_cols=103  Identities=14%  Similarity=0.072  Sum_probs=94.1

Q ss_pred             HHHHHHHhhHHHhCCc----------HHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc--CHHH
Q 013755          318 AGRKKEEGNLLFKNGK----------YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK--DYQG  385 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~----------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~--~~~~  385 (437)
                      ...+..++..+...++          |++|+..|.+++...|...               .+|++++.++.+++  +|++
T Consensus        63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y---------------~aW~hR~w~l~~l~~~~~~~  127 (567)
T 1dce_A           63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY---------------GTWHHRCWLLSRLPEPNWAR  127 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcccccHHH
Confidence            4566777777777777          9999999999999988764               78999999999999  7899


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCCC
Q 013755          386 AIELCSKVLDCDCHNVKALYRRAQAYMEIA-DLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       386 Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg-~~~~A~~~~~~al~l~P~n~  435 (437)
                      |+.+|++++++||.|..||+.|+.++..++ .+++|+++++++++++|+|.
T Consensus       128 el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~  178 (567)
T 1dce_A          128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY  178 (567)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred             HHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc
Confidence            999999999999999999999999999999 99999999999999999884

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=98.58  E-value=1.4e-07  Score=93.32  Aligned_cols=77  Identities=10%  Similarity=0.177  Sum_probs=64.6

Q ss_pred             EEEEEecCccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEE
Q 013755          215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYE  294 (437)
Q Consensus       215 ~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~  294 (437)
                      +|+|+. ||+.|+++ +  +.|+.|.+|.+.++|||+.+|.+|++|++..|.+++..+||..+        .+|.++.|.
T Consensus       167 ~y~g~~-dG~~fd~~-~--~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~--------lag~~~~F~  234 (432)
T 1w26_A          167 DFTGSV-DGEEFEGG-K--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAEN--------LKGKAAKFA  234 (432)
T ss_dssp             CEEEES-SSCBCSSC-C--CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTT--------TSSCEEEEE
T ss_pred             EEEEee-CCeEccCC-C--ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCC--------CCCceEEEE
Confidence            445553 67777776 3  68999999999999999999999999999999999999998643        256799999


Q ss_pred             EEEeeeecc
Q 013755          295 VEMMDFIKE  303 (437)
Q Consensus       295 vel~~~~~~  303 (437)
                      |+|+.+...
T Consensus       235 V~v~~v~~~  243 (432)
T 1w26_A          235 INLKKVEER  243 (432)
T ss_dssp             EECCEECCE
T ss_pred             EEEEEEecc
Confidence            999998753

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.57  E-value=1.4e-07  Score=75.72  Aligned_cols=68  Identities=24%  Similarity=0.193  Sum_probs=64.8

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      ...++++|.++...++|++|+..+++++..+|.++.+++.+|.+|..+|++++|+..|++++.+.|++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence            46688999999999999999999999999999999999999999999999999999999999998865

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.57  E-value=3.6e-07  Score=88.26  Aligned_cols=108  Identities=16%  Similarity=0.057  Sum_probs=66.9

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      .+..+...|..++..|+|++|+..|++++.+.+.....         .....+++++|.++..+|++++|+.++++++++
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  122 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQL  122 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            44566777778888888888888888888776653321         112344556666666666666666666666654


Q ss_pred             C--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          397 D--------CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       397 ~--------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      .        |....++.++|.++..+|++++|+..+++++.+.|.
T Consensus       123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            3        223345556666666666666666666666665553

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.55  E-value=3.1e-07  Score=72.87  Aligned_cols=85  Identities=12%  Similarity=0.013  Sum_probs=70.7

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ...+...|..++..|+|++|+..|++++...|..               ..+++++|.+|..+|++++|+..++++++++
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   83 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY---------------SVAWKWLGKTLQGQGDRAGARQAWESGLAAA   83 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            4578899999999999999999999999998764               3678999999999999999999999999998


Q ss_pred             CC--CHHHHHHHHHHHHHhccH
Q 013755          398 CH--NVKALYRRAQAYMEIADL  417 (437)
Q Consensus       398 p~--~~~a~~~~g~~~~~lg~~  417 (437)
                      |.  +..++..+...+..+++.
T Consensus        84 ~~~~~~~~~~~l~~~l~~l~~~  105 (115)
T 2kat_A           84 QSRGDQQVVKELQVFLRRLARE  105 (115)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHhccc
Confidence            74  455555555555555443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=4e-07  Score=74.93  Aligned_cols=82  Identities=15%  Similarity=0.054  Sum_probs=73.7

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      ....+...|..++..++|++|+..|++++...|.+               ..+++++|.+|..++++++|+.++++++++
T Consensus        64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A           64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD---------------VKALYRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            36778899999999999999999999999997764               367899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 013755          397 DCHNVKALYRRAQAYME  413 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~  413 (437)
                      +|++..++..++.+...
T Consensus       129 ~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          129 EPKNKVFQEALRNISGP  145 (148)
T ss_dssp             CSSCHHHHHHHHHHHCS
T ss_pred             CCCcHHHHHHHHHHHhh
Confidence            99999999888877543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.52  E-value=2.2e-07  Score=86.76  Aligned_cols=69  Identities=16%  Similarity=0.123  Sum_probs=66.1

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ...+.++|.++++.|+|++|+..|+++++++|+++.+++++|.+|..+|+|++|+.+|+++++++|++.
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~   72 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV   72 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence            456889999999999999999999999999999999999999999999999999999999999999874

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.51  E-value=6.2e-07  Score=84.68  Aligned_cols=101  Identities=15%  Similarity=0.015  Sum_probs=90.4

Q ss_pred             HHHHHhhHH----HhC---CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHH--HHHHHH
Q 013755          320 RKKEEGNLL----FKN---GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ--GAIELC  390 (437)
Q Consensus       320 ~~~~~g~~~----~~~---g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~--~Ai~~~  390 (437)
                      .+..++..+    ...   +++++++..+.+++...|.+.               .+|++++.+..+++.++  +++.++
T Consensus       105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny---------------~aW~~R~~vl~~l~~~~~~~EL~~~  169 (306)
T 3dra_A          105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH---------------HVWSYRKWLVDTFDLHNDAKELSFV  169 (306)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhcccChHHHHHHH
Confidence            344455555    444   789999999999999988764               78999999999999999  999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHhCCCCC
Q 013755          391 SKVLDCDCHNVKALYRRAQAYMEIAD------LILAELDIKKAIEADPQNR  435 (437)
Q Consensus       391 ~~al~~~p~~~~a~~~~g~~~~~lg~------~~~A~~~~~~al~l~P~n~  435 (437)
                      +++++.+|.|..||..|+.++..++.      ++++++++++++.++|+|.
T Consensus       170 ~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~  220 (306)
T 3dra_A          170 DKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNP  220 (306)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCc
Confidence            99999999999999999999999998      9999999999999999985

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.48  E-value=1.2e-06  Score=72.52  Aligned_cols=89  Identities=12%  Similarity=-0.059  Sum_probs=80.7

Q ss_pred             HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh----ccCHHHHHHHHHHHHHhCCC
Q 013755          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK----LKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~~~~~~Ai~~~~~al~~~p~  399 (437)
                      .|..++..+.+++|+..|++|.+...                 ..++++||.+|..    .+++.+|+.+|++|.+.  .
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g~-----------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g   91 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELNS-----------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N   91 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCCC-----------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C
Confidence            77778888889999999999998631                 4779999999999    89999999999999987  6


Q ss_pred             CHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhC
Q 013755          400 NVKALYRRAQAYME----IADLILAELDIKKAIEAD  431 (437)
Q Consensus       400 ~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~  431 (437)
                      ++.+++++|.+|..    .+++++|+.+|++|.++.
T Consensus        92 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            89999999999999    999999999999999874

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.47  E-value=1.3e-06  Score=83.14  Aligned_cols=103  Identities=12%  Similarity=0.118  Sum_probs=87.9

Q ss_pred             HHHHHHHhhHHHhCC--cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccC-HHHHHHHHHHHH
Q 013755          318 AGRKKEEGNLLFKNG--KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD-YQGAIELCSKVL  394 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-~~~Ai~~~~~al  394 (437)
                      ...+..++..+...+  .|++++..+.+++..+|.+.               .+|++++.+...++. +++++.++++++
T Consensus       108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy---------------~AW~~R~~vl~~l~~~~~eel~~~~~~I  172 (331)
T 3dss_A          108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF---------------HCWDYRRFVAAQAAVAPAEELAFTDSLI  172 (331)
T ss_dssp             HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence            345556677777777  48999999999999887653               779999999999988 689999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHh--------------ccHHHHHHHHHHHHHhCCCCC
Q 013755          395 DCDCHNVKALYRRAQAYMEI--------------ADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~l--------------g~~~~A~~~~~~al~l~P~n~  435 (437)
                      +.+|.|..||..++.++..+              +.++++++++++++.++|+|.
T Consensus       173 ~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~  227 (331)
T 3dss_A          173 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ  227 (331)
T ss_dssp             HHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999888              568999999999999999885

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.47  E-value=5.8e-07  Score=70.50  Aligned_cols=69  Identities=22%  Similarity=0.132  Sum_probs=62.5

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCD-------CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ..-++.+|..++++++|..|+..+++|++..       +..+..+.++|.||.++|++++|+..++++++++|+++
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~   80 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            3447899999999999999999999999863       34578899999999999999999999999999999985

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.45  E-value=1.1e-06  Score=83.59  Aligned_cols=112  Identities=13%  Similarity=0.099  Sum_probs=64.9

Q ss_pred             HHhhHHHhCCcHH-HHHHHHHHHHHhhccCCCC---------------Ch--------HHHH------HHHhhhHHHhhh
Q 013755          323 EEGNLLFKNGKYE-RAGKKYNKAADCVSEDGSF---------------VD--------DEQK------LVKSLRVSCWLN  372 (437)
Q Consensus       323 ~~g~~~~~~g~~~-~A~~~y~~al~~~~~~~~~---------------~~--------~~~~------~~~~~~~~~~~n  372 (437)
                      ..-....+.|.|. +|+..+.++|.++|.....               ..        ++..      ....-...+|+.
T Consensus        34 ~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~h  113 (331)
T 3dss_A           34 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH  113 (331)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            3334445677776 7999999999998875311               00        0000      011111234555


Q ss_pred             HHHHHHhcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCC
Q 013755          373 SAACCLKLK--DYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIAD-LILAELDIKKAIEADPQN  434 (437)
Q Consensus       373 la~~~~~~~--~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~-~~~A~~~~~~al~l~P~n  434 (437)
                      ++.++.+++  .|++++.+|+++++++|.|..||+.++.++..++. ++++++++.++++.+|+|
T Consensus       114 R~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N  178 (331)
T 3dss_A          114 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN  178 (331)
T ss_dssp             HHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC
Confidence            555555555  36666666666666666666666666666666665 466666666666666655

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.43  E-value=9.4e-07  Score=89.04  Aligned_cols=109  Identities=13%  Similarity=-0.039  Sum_probs=89.5

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..+.+.|..|...|+|++|+.+|+++|.+.......+       ....+..++|||.+|..+|+|++|+..|++||+
T Consensus       349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~  421 (490)
T 3n71_A          349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA  421 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4567788899999999999999999999999764321110       123467899999999999999999999999997


Q ss_pred             h-----CCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          396 C-----DCHN---VKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       396 ~-----~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      +     -|++   .+.+-.++.++.+++.|++|...|+++.+-.
T Consensus       422 i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          422 ILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5     3555   4667889999999999999999999987643

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.38  E-value=1.2e-06  Score=83.77  Aligned_cols=99  Identities=16%  Similarity=-0.002  Sum_probs=59.3

Q ss_pred             HHHHhhHHHhCC-cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc-c-CHHHHHHHHHHHHHhC
Q 013755          321 KKEEGNLLFKNG-KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL-K-DYQGAIELCSKVLDCD  397 (437)
Q Consensus       321 ~~~~g~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-~-~~~~Ai~~~~~al~~~  397 (437)
                      +..++..+...+ .+++++..+.++|..+|.+.               .+|+.++.++.++ + ++++++.+|+++|+++
T Consensus        91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny---------------~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d  155 (349)
T 3q7a_A           91 WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY---------------QVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD  155 (349)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH---------------HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC
Confidence            344455555555 36666666666665555432               4566666666655 5 5666666666666666


Q ss_pred             CCCHHHHHHHHHHHHHhccHH--------HHHHHHHHHHHhCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLI--------LAELDIKKAIEADPQN  434 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~--------~A~~~~~~al~l~P~n  434 (437)
                      |+|..||+.|+.++..++.++        ++++.++++++++|.|
T Consensus       156 pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N  200 (349)
T 3q7a_A          156 PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN  200 (349)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC
Confidence            666666666666666666655        6666666666666655

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.36  E-value=4.2e-06  Score=80.64  Aligned_cols=108  Identities=13%  Similarity=0.001  Sum_probs=90.0

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      +..+...|..++..|+|++|+..|++++...+......       ......++.++|.++..+|++++|+.++++++.+.
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  165 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ-------LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL  165 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT-------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc-------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            44467789999999999999999999999876432210       01234678899999999999999999999999987


Q ss_pred             CC-----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          398 CH-----NVKALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       398 p~-----~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      +.     ...+++.+|.++..+|++++|+..+++++.+.+
T Consensus       166 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            75     356899999999999999999999999998744

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.35  E-value=2.5e-06  Score=81.66  Aligned_cols=93  Identities=16%  Similarity=0.113  Sum_probs=84.6

Q ss_pred             HHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc-CHHHHHHHHHHHHHhCCCCHHHHHH
Q 013755          328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKVLDCDCHNVKALYR  406 (437)
Q Consensus       328 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~Ai~~~~~al~~~p~~~~a~~~  406 (437)
                      ..+.+..++|+..+.++|.++|...               .+|+.++.++..++ .+++++..++++|..+|++..+|+.
T Consensus        64 ~~~~e~se~AL~lt~~~L~~nP~~y---------------taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~h  128 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRMNPAHY---------------TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHH  128 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHhCchhH---------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            4445566889999999999998763               78999999999999 5999999999999999999999999


Q ss_pred             HHHHHHHh-c-cHHHHHHHHHHHHHhCCCCC
Q 013755          407 RAQAYMEI-A-DLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       407 ~g~~~~~l-g-~~~~A~~~~~~al~l~P~n~  435 (437)
                      |+.++..+ + +++++++.++++++++|.|-
T Consensus       129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy  159 (349)
T 3q7a_A          129 RLLLLDRISPQDPVSEIEYIHGSLLPDPKNY  159 (349)
T ss_dssp             HHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHhCCCCH
Confidence            99999998 8 99999999999999999884

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.24  E-value=4.7e-06  Score=84.79  Aligned_cols=118  Identities=11%  Similarity=-0.001  Sum_probs=81.2

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCC----------hHHHHHHHhhh----------HHHhhhHHHH-
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV----------DDEQKLVKSLR----------VSCWLNSAAC-  376 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~----------~~~~~~~~~~~----------~~~~~nla~~-  376 (437)
                      ...+...|..+.+.|++++|...|++++...|.+....          ....+......          ..++...+.. 
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~  400 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME  400 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            34456667777888899999999999988766432100          00001111111          1122233322 


Q ss_pred             HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       377 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +..+|++++|+..|+++++.+|+++.++..++..+..+|++++|+..|++|+...|.++
T Consensus       401 ~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~  459 (530)
T 2ooe_A          401 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  459 (530)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred             HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence            44688899999999999999999999999999999999999999999999998877654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.22  E-value=4.3e-06  Score=85.06  Aligned_cols=101  Identities=13%  Similarity=0.118  Sum_probs=78.8

Q ss_pred             HHHHHHHhhHHHh-------CCcHH-------HHHHHHHHHHH-hhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccC
Q 013755          318 AGRKKEEGNLLFK-------NGKYE-------RAGKKYNKAAD-CVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD  382 (437)
Q Consensus       318 ~~~~~~~g~~~~~-------~g~~~-------~A~~~y~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~  382 (437)
                      ...+...|..+.+       .|+++       +|+..|++|+. +.|..               ..+|+++|..+.++|+
T Consensus       272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---------------~~l~~~~~~~~~~~g~  336 (530)
T 2ooe_A          272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---------------MLLYFAYADYEESRMK  336 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC---------------HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHhcCC
Confidence            3455667777765       78887       99999999997 66653               3668888888888888


Q ss_pred             HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          383 YQGAIELCSKVLDCDCHNV-KALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       383 ~~~Ai~~~~~al~~~p~~~-~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      +++|+..|+++++++|.++ .+|..++.++..+|++++|+..|++|++..|.
T Consensus       337 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~  388 (530)
T 2ooe_A          337 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART  388 (530)
T ss_dssp             HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence            8888888888888888875 57888888877778888888888888776664

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=98.18  E-value=8.9e-07  Score=86.36  Aligned_cols=77  Identities=9%  Similarity=0.168  Sum_probs=59.9

Q ss_pred             EEEEEecCccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEE
Q 013755          215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYE  294 (437)
Q Consensus       215 ~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~  294 (437)
                      +|+|+. ||..|+++   .+.|+.|.+|.+.++|||+.+|.+|++||+..|.++....|+..        -.+|.++.|.
T Consensus       170 ~y~g~~-dG~~fd~~---~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~--------~laGk~~~F~  237 (392)
T 1t11_A          170 DFVGSI-DGVEFEGG---KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAE--------NLKGKAAKFA  237 (392)
T ss_dssp             EEEEES-SSSCCTTC---EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCT--------TTSSCEEEEC
T ss_pred             EEEEEE-CCEEccCC---CccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccC--------CCCCCeEEEE
Confidence            444442 56666654   35799999999999999999999999999999999644456632        2357899999


Q ss_pred             EEEeeeecc
Q 013755          295 VEMMDFIKE  303 (437)
Q Consensus       295 vel~~~~~~  303 (437)
                      |+|+.+...
T Consensus       238 V~v~~i~~~  246 (392)
T 1t11_A          238 IKVNKVEAR  246 (392)
T ss_dssp             CCEEEEEEE
T ss_pred             EEEEEEEcC
Confidence            999999754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.17  E-value=1.2e-05  Score=80.84  Aligned_cols=65  Identities=20%  Similarity=0.048  Sum_probs=58.5

Q ss_pred             HHHhhhHHHHHHh----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCC
Q 013755          367 VSCWLNSAACCLK----LKDYQGAIELCSKVLDCDCHNVKALYRRAQAYME----IADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       367 ~~~~~nla~~~~~----~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~P~  433 (437)
                      ..+++++|.+|..    .+++++|+.+|+++++.  .++.+++++|.+|..    .+++++|+.+|++|++.+|+
T Consensus       363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            4678999999999    89999999999999986  478999999999998    89999999999999998854

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.17  E-value=2.9e-05  Score=74.37  Aligned_cols=114  Identities=9%  Similarity=-0.032  Sum_probs=83.9

Q ss_pred             HHHHHhhHHHhC---CcHHHHHHHHHHHHHhhccCCC-----------------CChHHHHHHH------------hhhH
Q 013755          320 RKKEEGNLLFKN---GKYERAGKKYNKAADCVSEDGS-----------------FVDDEQKLVK------------SLRV  367 (437)
Q Consensus       320 ~~~~~g~~~~~~---g~~~~A~~~y~~al~~~~~~~~-----------------~~~~~~~~~~------------~~~~  367 (437)
                      .++-+|..++..   ..+.+|+.+|++|+++.|....                 ........+.            ....
T Consensus       198 dl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a  277 (372)
T 3ly7_A          198 TNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS  277 (372)
T ss_dssp             HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCH
Confidence            344455555543   4568999999999999886321                 1111111111            1112


Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      .++.-+|..+...|++++|+..+++|+.++| +..+|..+|.++...|++++|++.|.+|+.++|..
T Consensus       278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          278 IIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            3444566777778999999999999999997 57889999999999999999999999999999975

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.16  E-value=3e-06  Score=68.08  Aligned_cols=90  Identities=16%  Similarity=0.162  Sum_probs=73.4

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHH---HHHHHHHHHHhC-C-CCHHHHHH
Q 013755          332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG---AIELCSKVLDCD-C-HNVKALYR  406 (437)
Q Consensus       332 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~---Ai~~~~~al~~~-p-~~~~a~~~  406 (437)
                      .....+.+.|.+++...+.               ...+.+++|.|+.+..+...   +|..++..+..+ | ..-..+|.
T Consensus        15 ~~l~~~~~~y~~e~~~~~~---------------s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~   79 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSV---------------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY   79 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCC---------------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCC---------------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            3445666778777664331               24678899999999887666   999999988877 5 56789999


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          407 RAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       407 ~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +|.+++++|+|++|+.+++.+|+++|+|..
T Consensus        80 LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q  109 (126)
T 1nzn_A           80 LAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  109 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999864

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.14  E-value=2.1e-05  Score=65.97  Aligned_cols=100  Identities=10%  Similarity=0.058  Sum_probs=81.0

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC-ChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC-
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-VDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD-  397 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-  397 (437)
                      .+++....++..+.|+.|+..+..++.+..+++.. ..       .....++..+|.+++..++|.+|...|++||++. 
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp-------~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k   94 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSP-------PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK   94 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccH-------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            35677888999999999999999999887655432 21       3346778999999999999999999999998652 


Q ss_pred             --CCC----------------------HHHHHHHHHHHHHhccHHHHHHHHHH
Q 013755          398 --CHN----------------------VKALYRRAQAYMEIADLILAELDIKK  426 (437)
Q Consensus       398 --p~~----------------------~~a~~~~g~~~~~lg~~~~A~~~~~~  426 (437)
                        +++                      ....|++|.||.+++++++|+..++.
T Consensus        95 ~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A           95 ALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             CC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence              111                      25789999999999999999998764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.14  E-value=1.1e-05  Score=67.09  Aligned_cols=81  Identities=14%  Similarity=0.038  Sum_probs=68.3

Q ss_pred             HHHHHHHhhHHHhCC---cHHHHHHHHHHHHHhh-ccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH
Q 013755          318 AGRKKEEGNLLFKNG---KYERAGKKYNKAADCV-SEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g---~~~~A~~~y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  393 (437)
                      .+..++.|..+.+.+   ++++++..++..++.. |.              ....++++||..|+++++|.+|+++|+++
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~--------------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l   97 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--------------EQRDYVFYLAVGNYRLKEYEKALKYVRGL   97 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--------------HHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--------------chHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            466778888899988   7889999999999875 31              13578999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHH
Q 013755          394 LDCDCHNVKALYRRAQAYM  412 (437)
Q Consensus       394 l~~~p~~~~a~~~~g~~~~  412 (437)
                      |+++|+|..|...+..+-.
T Consensus        98 L~ieP~n~QA~~Lk~~ie~  116 (152)
T 1pc2_A           98 LQTEPQNNQAKELERLIDK  116 (152)
T ss_dssp             HHHCTTCHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHH
Confidence            9999999988776655443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.09  E-value=3.7e-06  Score=77.93  Aligned_cols=96  Identities=15%  Similarity=-0.002  Sum_probs=80.2

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ......+..+...|+|++|...|..++...|.               .. +++.+|.++++.++|++|+.++++++...+
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~---------------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d  166 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPVAGSE---------------HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD  166 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH---------------HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc---------------hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence            34456788889999999999999988765443               12 689999999999999999999998877642


Q ss_pred             CC--HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          399 HN--VKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       399 ~~--~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      ..  ..+++.+|.++..+|++++|+.+|++++.-
T Consensus       167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g  200 (282)
T 4f3v_A          167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDS  200 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence            21  358999999999999999999999999853

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.06  E-value=1.7e-05  Score=77.87  Aligned_cols=121  Identities=16%  Similarity=0.145  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC------------------ChHHHHH-------------
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF------------------VDDEQKL-------------  361 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------------~~~~~~~-------------  361 (437)
                      ........+...|..|++.|+|++|+..|.+++...+.....                  ..+....             
T Consensus        50 ~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  129 (434)
T 4b4t_Q           50 RRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK  129 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS
T ss_pred             HhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC
Confidence            444556678888999999999999999998888765442210                  0111100             


Q ss_pred             HHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          362 VKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC------DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       362 ~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      ...+...++.++|.+|..+|+|.+|+..+++++..      .+....++..++.+|..+|+|++|+..|++++.+.+.
T Consensus       130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          130 RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence            01134568899999999999999999999999876      2334688999999999999999999999999987653

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.06  E-value=1.7e-05  Score=73.00  Aligned_cols=89  Identities=11%  Similarity=0.041  Sum_probs=77.2

Q ss_pred             cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc-----cCHHHHHHHHHHHHHhCCCC-HHHHHH
Q 013755          333 KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL-----KDYQGAIELCSKVLDCDCHN-VKALYR  406 (437)
Q Consensus       333 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-----~~~~~Ai~~~~~al~~~p~~-~~a~~~  406 (437)
                      ....|...+++|++++|..             +...+|..+|..|.+.     |+.++|..+|++||+++|+. ..+++.
T Consensus       178 ~l~~A~a~lerAleLDP~~-------------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~  244 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSY-------------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHIT  244 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTH-------------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCc-------------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHH
Confidence            3567778888888887752             2357899999999996     99999999999999999975 999999


Q ss_pred             HHHHHHH-hccHHHHHHHHHHHHHhCCCC
Q 013755          407 RAQAYME-IADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       407 ~g~~~~~-lg~~~~A~~~~~~al~l~P~n  434 (437)
                      .|..+.. ++++++|.+.+++|+..+|..
T Consensus       245 YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          245 YADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            9999988 599999999999999998874

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.03  E-value=4.2e-05  Score=76.87  Aligned_cols=111  Identities=16%  Similarity=0.055  Sum_probs=56.8

Q ss_pred             HHHHHHHhhHHHh----CCcHHHHHHHHHHHHHhhccCC--------------CCChHHH-----HHHHhhhHHHhhhHH
Q 013755          318 AGRKKEEGNLLFK----NGKYERAGKKYNKAADCVSEDG--------------SFVDDEQ-----KLVKSLRVSCWLNSA  374 (437)
Q Consensus       318 ~~~~~~~g~~~~~----~g~~~~A~~~y~~al~~~~~~~--------------~~~~~~~-----~~~~~~~~~~~~nla  374 (437)
                      +..+...|..++.    .+++++|+..|+++++......              .-+.++-     .....-...++++||
T Consensus        39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg  118 (490)
T 2xm6_A           39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLG  118 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4556667777776    6777777777777766411000              0000000     000011123455555


Q ss_pred             HHHHh----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHh
Q 013755          375 ACCLK----LKDYQGAIELCSKVLDCDCHNVKALYRRAQAYME----IADLILAELDIKKAIEA  430 (437)
Q Consensus       375 ~~~~~----~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l  430 (437)
                      .+|..    .+++++|+.+|+++++.  +++.+++++|.+|..    .+++++|+.+|+++++.
T Consensus       119 ~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~  180 (490)
T 2xm6_A          119 VMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ  180 (490)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            55555    55555555555555543  345555555555555    55555555555555543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.00  E-value=2.1e-05  Score=78.52  Aligned_cols=31  Identities=10%  Similarity=-0.075  Sum_probs=26.5

Q ss_pred             HHHHHhhHHHhCC---cHHHHHHHHHHHHHhhcc
Q 013755          320 RKKEEGNLLFKNG---KYERAGKKYNKAADCVSE  350 (437)
Q Consensus       320 ~~~~~g~~~~~~g---~~~~A~~~y~~al~~~~~  350 (437)
                      .+...|..+...|   ++++|+..|++++...+.
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~  211 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV  211 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH
Confidence            5677888899999   999999999999987654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.96  E-value=2.7e-05  Score=76.34  Aligned_cols=65  Identities=8%  Similarity=-0.105  Sum_probs=55.9

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDC------HNVKALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p------~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      .++.+++.++...+++++|+..|++++...+      ...+++.++|.+|..+|+|++|+..+++++....
T Consensus        96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~  166 (434)
T 4b4t_Q           96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK  166 (434)
T ss_dssp             HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence            4567788889899999999999999997643      2368899999999999999999999999987643

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.93  E-value=3.6e-05  Score=63.40  Aligned_cols=78  Identities=17%  Similarity=0.005  Sum_probs=69.5

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013755          332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAY  411 (437)
Q Consensus       332 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~  411 (437)
                      +++++|+..|+++.+....                 .+.  +|.+|.....+++|+.+|+++.+.  .++.+++++|.+|
T Consensus         9 ~d~~~A~~~~~~aa~~g~~-----------------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y   67 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEM-----------------FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFY   67 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCT-----------------THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCH-----------------hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence            5789999999999987522                 223  999999999999999999999997  6899999999999


Q ss_pred             HH----hccHHHHHHHHHHHHHh
Q 013755          412 ME----IADLILAELDIKKAIEA  430 (437)
Q Consensus       412 ~~----lg~~~~A~~~~~~al~l  430 (437)
                      ..    .+++++|+.+|++|.+.
T Consensus        68 ~~G~g~~~d~~~A~~~~~~Aa~~   90 (138)
T 1klx_A           68 ENGKYVKKDLRKAAQYYSKACGL   90 (138)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             HcCCCCCccHHHHHHHHHHHHcC
Confidence            99    89999999999999876

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=97.92  E-value=1.8e-05  Score=78.21  Aligned_cols=76  Identities=12%  Similarity=0.100  Sum_probs=63.0

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCCC
Q 013755           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (437)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~~  140 (437)
                      .++.||.|+|+|+++. ||..|+++..  .++.+.+|.+.  + |+++|.||++|++++|++++               +
T Consensus       154 ~a~~gD~V~id~~~~~-dG~~~~~~~~--~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF---------------a  212 (433)
T 3gty_X          154 PAEAGDLVRVNMEVYN-EEGKKLTSRE--YEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY---------------E  212 (433)
T ss_dssp             CCCTTSEEEEEEEEEC-TTSCEEEEEE--EEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE---------------T
T ss_pred             ccCCCCEEEEEEEEEE-CCEECcCCCC--CCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee---------------C
Confidence            5789999999999884 9999998654  67888888887  4 99999999999999994433               3


Q ss_pred             CCcEEEEEEEeceeeee
Q 013755          141 NSVVQFEVELVSWITVV  157 (437)
Q Consensus       141 ~~~~~f~v~l~~~~~~~  157 (437)
                      +.+..|.|++..+....
T Consensus       213 Gk~a~F~VtV~~Ik~~~  229 (433)
T 3gty_X          213 GKKYTYKLEVEEVYKRT  229 (433)
T ss_dssp             TEEEEEEEEEEEEEEEC
T ss_pred             CCeEEEEEEEEEEEEec
Confidence            56789999999986544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.92  E-value=2.9e-05  Score=59.40  Aligned_cols=69  Identities=16%  Similarity=0.076  Sum_probs=60.1

Q ss_pred             HHHHHHHhhHHHhCCc---HHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          318 AGRKKEEGNLLFKNGK---YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~---~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      +..+...|..++..++   .++|..++++||.++|.+.               .+++.+|..+++.|+|++|+.++++++
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~---------------rA~~~lg~~~~~~g~y~~Ai~~w~~~l   70 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNE---------------AALSLIANDHFISFRFQEAIDTWVLLL   70 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4567778888865555   7999999999999998864               778999999999999999999999999


Q ss_pred             HhCCCCH
Q 013755          395 DCDCHNV  401 (437)
Q Consensus       395 ~~~p~~~  401 (437)
                      +.+|.++
T Consensus        71 ~~~p~~~   77 (93)
T 3bee_A           71 DSNDPNL   77 (93)
T ss_dssp             TCCCTTC
T ss_pred             hhCCCCc
Confidence            9999843

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.88  E-value=2e-05  Score=77.47  Aligned_cols=32  Identities=9%  Similarity=0.001  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          403 ALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       403 a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      -+..+..+|.++|+|++|+..|+++|.+++.+
T Consensus       209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah  240 (449)
T 1b89_A          209 ELEELINYYQDRGYFEELITMLEAALGLERAH  240 (449)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred             hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence            34455678888999999999999999888654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.84  E-value=4.9e-05  Score=83.68  Aligned_cols=92  Identities=15%  Similarity=0.179  Sum_probs=77.2

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC-
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC-  398 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-  398 (437)
                      .+...|..++..|+|++|+.+|.+|-                       .|..+|.||.++|+|++|++.+.+|...++ 
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA~-----------------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhh-----------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence            45679999999999999999999962                       277899999999999999999998855433 


Q ss_pred             ------------------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          399 ------------------------HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       399 ------------------------~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                                              .++..+..++..|..+|.|++|+..|+++|.++|.+
T Consensus      1254 kev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A         1254 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH
Confidence                                    244556678888999999999999999999999765

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.83  E-value=4.8e-05  Score=75.84  Aligned_cols=58  Identities=19%  Similarity=-0.013  Sum_probs=34.5

Q ss_pred             HHhhhHHHHHHhcc-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHH
Q 013755          368 SCWLNSAACCLKLK-----DYQGAIELCSKVLDCDCHNVKALYRRAQAYME----IADLILAELDIKKAIE  429 (437)
Q Consensus       368 ~~~~nla~~~~~~~-----~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~  429 (437)
                      .++++||.+|. .|     ++.+|+.+|+++.   +.++.+++++|.+|..    ..++++|+.+|++|.+
T Consensus       284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  350 (452)
T 3e4b_A          284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR  350 (452)
T ss_dssp             HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence            44556666665 33     6666666666666   5566666666666655    2366666666666654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.76  E-value=4.9e-05  Score=71.35  Aligned_cols=94  Identities=12%  Similarity=-0.001  Sum_probs=75.8

Q ss_pred             HhhHHHhCC--cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh-----
Q 013755          324 EGNLLFKNG--KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC-----  396 (437)
Q Consensus       324 ~g~~~~~~g--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-----  396 (437)
                      .|...+..|  ++++|...|+++....|...             ...+++|   |++++|+|++|...++++++.     
T Consensus       182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~~-------------~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~  245 (310)
T 3mv2_B          182 ESYIKFATNKETATSNFYYYEELSQTFPTWK-------------TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVE  245 (310)
T ss_dssp             HHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH-------------HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhCCCcc-------------cHHHHHH---HHHHcCCHHHHHHHHHHHHHhccccc
Confidence            443345445  99999999999876655300             1234455   899999999999999988876     


Q ss_pred             -----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          397 -----DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       397 -----~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                           +|+++.++.++..+...+|+  +|.+.+.++.+++|+++
T Consensus       246 ~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp  287 (310)
T 3mv2_B          246 QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA  287 (310)
T ss_dssp             TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence                 58999999999999999998  89999999999999985

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.74  E-value=0.00011  Score=81.06  Aligned_cols=107  Identities=14%  Similarity=0.027  Sum_probs=82.5

Q ss_pred             HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC--ChHHHHHHH-----hhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF--VDDEQKLVK-----SLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~--~~~~~~~~~-----~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      .+.|..+...|.|++|...|+++-........+  .-..++...     -....+|+++|.++..+|+|++|+.+|.+| 
T Consensus      1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A         1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence            345999999999999999999974322110000  001112211     123578999999999999999999999886 


Q ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                          +++.+|++.|.++..+|+|++|+++|..|.+.+++
T Consensus      1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence                88999999999999999999999999999988754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.70  E-value=9e-05  Score=73.34  Aligned_cols=94  Identities=10%  Similarity=-0.099  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      ...+..+.+.|..|...|+|++|+.+|+++|.+........       ....+..++|||.+|..+|+|++|+..+++|+
T Consensus       326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            45567788899999999999999999999999754311110       13356789999999999999999999999999


Q ss_pred             Hh-----CCCCH---HHHHHHHHHHHHhc
Q 013755          395 DC-----DCHNV---KALYRRAQAYMEIA  415 (437)
Q Consensus       395 ~~-----~p~~~---~a~~~~g~~~~~lg  415 (437)
                      ++     -|+++   .++.+++.++..++
T Consensus       399 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          399 DIMRVTHGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence            76     45554   55677777776654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.61  E-value=0.00011  Score=59.09  Aligned_cols=70  Identities=13%  Similarity=0.185  Sum_probs=59.0

Q ss_pred             HHHhhhHHHHHHhccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          367 VSCWLNSAACCLKLKD---YQGAIELCSKVLDCDCH-NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~---~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ..+.+|.|.|+.+..+   ..++|..++..+..+|. .-..+|.+|.++.++|+|++|+.+.+.+|+++|+|..
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q  113 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  113 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence            4667888888887665   45789999999988884 4788999999999999999999999999999999853

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.60  E-value=0.00016  Score=58.95  Aligned_cols=70  Identities=13%  Similarity=0.185  Sum_probs=59.4

Q ss_pred             HHHhhhHHHHHHhccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          367 VSCWLNSAACCLKLKD---YQGAIELCSKVLDCDCH-NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~---~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ..+.+|.|.|+.+..+   -.+++..++..+..+|. .-..+|.+|.+++++|+|++|+.+.+.+|+++|+|..
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            4667888888888665   45789999999988884 5688999999999999999999999999999999853

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.54  E-value=0.0002  Score=67.14  Aligned_cols=107  Identities=7%  Similarity=-0.093  Sum_probs=70.6

Q ss_pred             HHHhhHHHhCCcHHHHHHHHHHHHHhhc--cCCC-------------CChH---HHHHHHhhh-------HHHhhhHHHH
Q 013755          322 KEEGNLLFKNGKYERAGKKYNKAADCVS--EDGS-------------FVDD---EQKLVKSLR-------VSCWLNSAAC  376 (437)
Q Consensus       322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~--~~~~-------------~~~~---~~~~~~~~~-------~~~~~nla~~  376 (437)
                      ...|..++..|++++|++.+.+++...+  ....             ..+.   ..+.++...       -.+..+++..
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea  183 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAES  183 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHH
Confidence            4667777777777777777777754332  1100             0011   111112221       2445666655


Q ss_pred             --HHhcc--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          377 --CLKLK--DYQGAIELCSKVLDCDCH--NVKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       377 --~~~~~--~~~~Ai~~~~~al~~~p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                        .+..|  ++.+|+..|+++.+..|+  ....+++   +++.+|+|++|.+.+++++++.
T Consensus       184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence              55556  999999999999888886  3445555   9999999999999999888874

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.54  E-value=0.0017  Score=63.18  Aligned_cols=115  Identities=12%  Similarity=-0.017  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCC--C-----CChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG--S-----FVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAI  387 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~--~-----~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai  387 (437)
                      ......+...|......++.+.|...|.+|+.+.....  .     .-..+...+.+....+...++.++...|++.+|+
T Consensus       112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~  191 (388)
T 2ff4_A          112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI  191 (388)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            34566777778888889999999999999999864321  1     1123446677888888899999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755          388 ELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE  429 (437)
Q Consensus       388 ~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~  429 (437)
                      ..+.+++..+|-+..++..+-.+|...|+..+|++.|+++-+
T Consensus       192 ~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          192 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.50  E-value=0.00026  Score=69.95  Aligned_cols=80  Identities=13%  Similarity=-0.010  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..+.+.|..|...|+|++|+.+|+++|.+.......+       ....+..++|||.+|..+|+|++|+..+++||+
T Consensus       338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-------SLNVASMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            4566778899999999999999999999999764321110       123467899999999999999999999999997


Q ss_pred             h-----CCCCHH
Q 013755          396 C-----DCHNVK  402 (437)
Q Consensus       396 ~-----~p~~~~  402 (437)
                      +     -|+++.
T Consensus       411 i~~~~lG~~Hp~  422 (433)
T 3qww_A          411 IMEVAHGKDHPY  422 (433)
T ss_dssp             HHHHHTCTTCHH
T ss_pred             HHHHHcCCCChH
Confidence            6     466654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.35  E-value=0.0011  Score=53.00  Aligned_cols=79  Identities=13%  Similarity=0.014  Sum_probs=58.4

Q ss_pred             HHHHHHhhHHHhCCcHHH---HHHHHHHHHHhh-ccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          319 GRKKEEGNLLFKNGKYER---AGKKYNKAADCV-SEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~---A~~~y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      +..++.|..+.+..+-..   ++..++..++.. |              ..+..+++.||..++++|+|.+|+.+|+.+|
T Consensus        36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p--------------~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL  101 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK--------------EEQRDYVFYLAVGNYRLKEYEKALKYVRGLL  101 (126)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--------------chHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344555666666655444   777777665542 1              1245789999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHH
Q 013755          395 DCDCHNVKALYRRAQAY  411 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~  411 (437)
                      +.+|+|..|.-.+..+-
T Consensus       102 ~~eP~n~QA~~Lk~~i~  118 (126)
T 1nzn_A          102 QTEPQNNQAKELERLID  118 (126)
T ss_dssp             HHCTTCHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHH
Confidence            99999998876655443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.29  E-value=0.0012  Score=60.80  Aligned_cols=53  Identities=8%  Similarity=-0.023  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhCCCC
Q 013755          382 DYQGAIELCSKVLDCDCH--NVKALYRRAQAYMEI-----ADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       382 ~~~~Ai~~~~~al~~~p~--~~~a~~~~g~~~~~l-----g~~~~A~~~~~~al~l~P~n  434 (437)
                      ...+|...+++|+++||+  +..+|..+|..|..+     |+.++|.++|++||+++|+.
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~  237 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH  237 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence            468899999999999999  567999999999996     99999999999999999974

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.25  E-value=0.0033  Score=50.50  Aligned_cols=80  Identities=14%  Similarity=0.078  Sum_probs=60.4

Q ss_pred             HHHHHHhhHHHhCCc---HHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          319 GRKKEEGNLLFKNGK---YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~---~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      +..++.|..+.+..+   ..+++..+...++..|.              .+..+++.||..++++|+|.+|+++++.+|+
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~--------------~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES--------------RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG--------------GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--------------hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            334445555555543   45788888887765432              2468899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHH
Q 013755          396 CDCHNVKALYRRAQAYM  412 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~  412 (437)
                      .+|+|..|.-.+..+--
T Consensus       107 ~eP~N~QA~~Lk~~Ie~  123 (134)
T 3o48_A          107 HERNNKQVGALKSMVED  123 (134)
T ss_dssp             TCTTCHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHH
Confidence            99999988766655543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.24  E-value=0.0044  Score=50.44  Aligned_cols=79  Identities=14%  Similarity=0.099  Sum_probs=60.1

Q ss_pred             HHHHHHhhHHHhCCc---HHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          319 GRKKEEGNLLFKNGK---YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~---~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      +..++.|..+.+..+   -.+++.+++..++..|..              +..+++.||..++++++|.+|.++++.+|+
T Consensus        40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~--------------~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~  105 (144)
T 1y8m_A           40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------------RRECLYYLTIGCYKLGEYSMAKRYVDTLFE  105 (144)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST--------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc--------------hhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            344555666666554   356888888877754321              457899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHH
Q 013755          396 CDCHNVKALYRRAQAY  411 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~  411 (437)
                      .+|+|..|.-.+..+-
T Consensus       106 ~eP~n~QA~~Lk~~Ie  121 (144)
T 1y8m_A          106 HERNNKQVGALKSMVE  121 (144)
T ss_dssp             TCCCCHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHH
Confidence            9999988876555443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.90  E-value=0.0044  Score=51.87  Aligned_cols=95  Identities=17%  Similarity=0.115  Sum_probs=64.5

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChH--------HHHH--HHhhhHHHhhhHHHHHHhccCHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDD--------EQKL--VKSLRVSCWLNSAACCLKLKDYQG  385 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~--------~~~~--~~~~~~~~~~nla~~~~~~~~~~~  385 (437)
                      ..++.+.-.|+.+|..++|.+|...|++||............        -...  ...--..+.+.+|.||.+++++.+
T Consensus        61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~  140 (167)
T 3ffl_A           61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD  140 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence            456778889999999999999999999999875432111000        0000  000113567889999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013755          386 AIELCSKVLDCDCHNVKALYRRAQAY  411 (437)
Q Consensus       386 Ai~~~~~al~~~p~~~~a~~~~g~~~  411 (437)
                      |+...+.+ -..-..++....+|+.|
T Consensus       141 Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          141 AIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             HHHHHhcC-CchhcCHHHHHHHHHHh
Confidence            99987553 22235677777777765

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.69  E-value=0.0017  Score=63.72  Aligned_cols=122  Identities=10%  Similarity=0.021  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhc-cC---CCCChHHHHHHHh------hhHHHhhhHHHHHHhc
Q 013755          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS-ED---GSFVDDEQKLVKS------LRVSCWLNSAACCLKL  380 (437)
Q Consensus       311 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~-~~---~~~~~~~~~~~~~------~~~~~~~nla~~~~~~  380 (437)
                      ...-...+..+...|..+++.|+|++|++.|++|..... ..   ......++...+.      ....-+..+..+|.+.
T Consensus       141 A~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~  220 (449)
T 1b89_A          141 AKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDR  220 (449)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHC
Confidence            334456667778899999999999999999999932200 00   0000000000000      0001122456789999


Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HhccHHHHHHHHHHHHHhCC
Q 013755          381 KDYQGAIELCSKVLDCDCHNVKALYRRAQAYM--EIADLILAELDIKKAIEADP  432 (437)
Q Consensus       381 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~--~lg~~~~A~~~~~~al~l~P  432 (437)
                      |+|++|+..++++|.+++.+..++..+|.+|.  +.++..++++.|...+.+.|
T Consensus       221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k  274 (449)
T 1b89_A          221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK  274 (449)
T ss_dssp             TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred             CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence            99999999999999999999999999999886  45677777777766555444

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.49  E-value=0.01  Score=56.72  Aligned_cols=68  Identities=10%  Similarity=-0.007  Sum_probs=56.7

Q ss_pred             HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV  401 (437)
Q Consensus       322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~  401 (437)
                      ...|..++..|++++|+..+++|+.++|+                ...|..+|.++...|++++|+..|++|+.++|...
T Consensus       281 ~alal~~l~~gd~d~A~~~l~rAl~Ln~s----------------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          281 QIKAVSALVKGKTDESYQAINTGIDLEMS----------------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            34566677789999999999999999743                24577889999999999999999999999999765


Q ss_pred             HHHHH
Q 013755          402 KALYR  406 (437)
Q Consensus       402 ~a~~~  406 (437)
                       .|+.
T Consensus       345 -t~~~  348 (372)
T 3ly7_A          345 -TLYW  348 (372)
T ss_dssp             -HHHH
T ss_pred             -hHHH
Confidence             4433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.07  E-value=0.04  Score=57.82  Aligned_cols=60  Identities=13%  Similarity=0.127  Sum_probs=53.7

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKA  427 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a  427 (437)
                      .++.-.+.-++..++|+-|+...++|....|.....|++++.||..+|+|+.|+-.++.+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            345556776778999999999999999999999999999999999999999999887766

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.79  E-value=0.053  Score=56.58  Aligned_cols=99  Identities=9%  Similarity=-0.023  Sum_probs=72.4

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc-CHHHHHHHHHHHHHhCCC
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~Ai~~~~~al~~~p~  399 (437)
                      +...++...+.+..+.|...|.+|++..+...              ..+|...|....+.+ +++.|...|+++|+..|+
T Consensus       437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~--------------~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~  502 (679)
T 4e6h_A          437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT--------------PDIYLENAYIEYHISKDTKTACKVLELGLKYFAT  502 (679)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC--------------THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC--------------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence            34444555566788999999999988733221              244556666655654 488888888888888888


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      ++..+...+......|+.+.|+..|++|+...|+
T Consensus       503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~  536 (679)
T 4e6h_A          503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISD  536 (679)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred             chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence            8888777777777888888888888888887763

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.77  E-value=0.029  Score=58.52  Aligned_cols=82  Identities=17%  Similarity=0.122  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHH
Q 013755          334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAI-ELCSKVLDCDCHNVKALYRRAQAYM  412 (437)
Q Consensus       334 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai-~~~~~al~~~p~~~~a~~~~g~~~~  412 (437)
                      .+.....|++||..+|..+               .+|+..|..+...++.++|+ ..+++|+...|.+...++..+....
T Consensus       325 ~~Rv~~~Ye~aL~~~p~~~---------------~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee  389 (679)
T 4e6h_A          325 KARMTYVYMQAAQHVCFAP---------------EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYE  389 (679)
T ss_dssp             HHHHHHHHHHHHHHTTTCH---------------HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCH---------------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3456678999999888754               67899999888899999997 9999999999999999999999999


Q ss_pred             HhccHHHHHHHHHHHHHh
Q 013755          413 EIADLILAELDIKKAIEA  430 (437)
Q Consensus       413 ~lg~~~~A~~~~~~al~l  430 (437)
                      ..|++++|.+.|++++..
T Consensus       390 ~~~~~e~aR~iyek~l~~  407 (679)
T 4e6h_A          390 LNTKIPEIETTILSCIDR  407 (679)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHH
Confidence            999999999999999975

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.66  E-value=0.16  Score=49.12  Aligned_cols=98  Identities=14%  Similarity=-0.020  Sum_probs=79.5

Q ss_pred             HHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC---CC
Q 013755          323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD---CH  399 (437)
Q Consensus       323 ~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~---p~  399 (437)
                      ..|..|+..|+|.+|+..+.+.++......+         ..+...++......|..++++.++...+.+|....   +.
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~  174 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDD---------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC  174 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence            6889999999999999999999998755321         25567888889999999999999999999987653   12


Q ss_pred             CH----HHHHHHHHHHH-HhccHHHHHHHHHHHHH
Q 013755          400 NV----KALYRRAQAYM-EIADLILAELDIKKAIE  429 (437)
Q Consensus       400 ~~----~a~~~~g~~~~-~lg~~~~A~~~~~~al~  429 (437)
                      ++    .....-|..++ ..++|..|-.+|-.+++
T Consensus       175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            22    33556688888 89999999999998874

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.40  E-value=0.13  Score=42.25  Aligned_cols=92  Identities=11%  Similarity=-0.006  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 013755          335 ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEI  414 (437)
Q Consensus       335 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l  414 (437)
                      ++-+..|++|+...|....       ..++--+.+|.+.|.- ..+++.++|.+.|+.++.+....++.|...|+--...
T Consensus        36 ~rlrd~YerAia~~Pp~k~-------~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRq  107 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKY-------GQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQ  107 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGG-------TTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCcccc-------ccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence            7788899999998875421       1223344566666644 6679999999999999999878888888888888899


Q ss_pred             ccHHHHHHHHHHHHHhCCCC
Q 013755          415 ADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       415 g~~~~A~~~~~~al~l~P~n  434 (437)
                      |+...|+..+.+|+.+.|..
T Consensus       108 gnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A          108 GNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             TCHHHHHHHHHHHHHTTCBC
T ss_pred             ccHHHHHHHHHHHhccCCCc
Confidence            99999999999999998854

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.95  E-value=0.17  Score=42.33  Aligned_cols=89  Identities=18%  Similarity=0.106  Sum_probs=65.6

Q ss_pred             HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH--h--C--
Q 013755          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD--C--D--  397 (437)
Q Consensus       324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~--~--~--  397 (437)
                      .+..+|-.|.|.+|+-++.+       ..             -+...+--+.||.++++|.+|+...++.|+  .  |  
T Consensus        39 ~~I~LyyngEY~R~Lf~L~~-------lN-------------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~   98 (242)
T 3kae_A           39 MSIVLYLNGEYTRALFHLHK-------LN-------------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPD   98 (242)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-------CC-------------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCC
T ss_pred             hhhhhhhcchHhHHHHHHHh-------cc-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc
Confidence            45566777777666654432       11             135566788999999999999999999993  2  2  


Q ss_pred             -----------CCCHH-HHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          398 -----------CHNVK-ALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       398 -----------p~~~~-a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                                 |.+.. .+..+|..+...|+-++|+.+|......+|
T Consensus        99 ~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~  145 (242)
T 3kae_A           99 VDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF  145 (242)
T ss_dssp             CCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             cccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence                       33333 355679999999999999999999888765

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=94.74  E-value=0.056  Score=53.12  Aligned_cols=59  Identities=15%  Similarity=0.116  Sum_probs=45.1

Q ss_pred             CccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755          222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (437)
Q Consensus       222 ~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~  301 (437)
                      ||..|+++   .+.++.|.+|.+.  + |+.+|.+|++||...|.+..                 +|.+..|.|.|..+.
T Consensus       170 dG~~~~~~---~~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF-----------------aGk~a~F~VtV~~Ik  226 (433)
T 3gty_X          170 EEGKKLTS---REYEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY-----------------EGKKYTYKLEVEEVY  226 (433)
T ss_dssp             TTSCEEEE---EEEEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE-----------------TTEEEEEEEEEEEEE
T ss_pred             CCEECcCC---CCCCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee-----------------CCCeEEEEEEEEEEE
Confidence            55556543   2357778888776  4 99999999999999999842                 356789999999997


Q ss_pred             cc
Q 013755          302 KE  303 (437)
Q Consensus       302 ~~  303 (437)
                      ..
T Consensus       227 ~~  228 (433)
T 3gty_X          227 KR  228 (433)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=94.74  E-value=0.26  Score=45.68  Aligned_cols=115  Identities=15%  Similarity=0.137  Sum_probs=71.4

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhh-hHHHHHHhc--cC-----HHHHHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWL-NSAACCLKL--KD-----YQGAIEL  389 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-nla~~~~~~--~~-----~~~Ai~~  389 (437)
                      .......|..++..|+|++|+..|+.+|...+-....+.++..+++++...+.- -+|.- +.+  .+     .+...+.
T Consensus       102 l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~-iEl~Rr~l~~~~~~~~kR~  180 (320)
T 3mkr_B          102 LIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLS-METERKKLPKETLEQQKRI  180 (320)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTSCCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccCCchhHHHH
Confidence            334568899999999999999999999999886655555666666666554432 23322 122  11     1222222


Q ss_pred             HHHHH-----HhCCCCHHHHHHHHH-HHHHhccHHHHHHHHHHHHHhCCC
Q 013755          390 CSKVL-----DCDCHNVKALYRRAQ-AYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       390 ~~~al-----~~~p~~~~a~~~~g~-~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      ++-+-     .+.|.+...-.|.|. ..++.++|..|...-++.|++.|+
T Consensus       181 lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~  230 (320)
T 3mkr_B          181 CEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK  230 (320)
T ss_dssp             HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            22221     234444333334443 456788999998888888888774

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.67  E-value=0.13  Score=50.50  Aligned_cols=98  Identities=12%  Similarity=0.020  Sum_probs=78.4

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC--C
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD--C  398 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~--p  398 (437)
                      +...|..+++.|+++.|+..|.++........            .+..+++++..+++..++|..+..++.++..+-  .
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~------------~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~  201 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTG------------AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG  201 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC------------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence            45789999999999999999999988765432            246778888999999999999999999987652  1


Q ss_pred             CCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          399 HNV----KALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       399 ~~~----~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      .++    +.....|.++...++|.+|-..|..++.-
T Consensus       202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            222    34455677888899999999999887754

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=94.56  E-value=0.18  Score=46.79  Aligned_cols=118  Identities=11%  Similarity=0.036  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhh-hHHHHHHhccCH----HHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWL-NSAACCLKLKDY----QGAIEL  389 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-nla~~~~~~~~~----~~Ai~~  389 (437)
                      +.........|..++..|+|++|+..|+.+|...+-..-.+.++..+++++...+.- -+|.- +.+.+-    +...+.
T Consensus       111 l~~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~-iEl~Rr~l~~~~~kR~  189 (325)
T 3mv2_A          111 LDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLS-IELERRSLKEGNTVRM  189 (325)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHH-HHHHHHTCCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCcccHHHH
Confidence            334444566899999999999999999999999876544444555555555544322 22322 111110    111111


Q ss_pred             HHHH-----HHhCCCCHHHHHHHHH-HHHHhccHHHHHHHHHHHHHhCCC
Q 013755          390 CSKV-----LDCDCHNVKALYRRAQ-AYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       390 ~~~a-----l~~~p~~~~a~~~~g~-~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      ++-|     ..+.|.+-..-.|.|. ..++.++|..|...-++.|++.|+
T Consensus       190 lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~  239 (325)
T 3mv2_A          190 LELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS  239 (325)
T ss_dssp             HHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            2211     1223333333333333 346778888888888888888774

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.37  E-value=0.39  Score=43.45  Aligned_cols=96  Identities=11%  Similarity=-0.064  Sum_probs=77.1

Q ss_pred             hhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHH-
Q 013755          325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA-  403 (437)
Q Consensus       325 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a-  403 (437)
                      ...+++.|+.++|+......++..|.+.               .+...+-..+.-.|+|++|.+.++.+.+++|..... 
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~da---------------~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a   68 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKDA---------------SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA   68 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence            3567899999999999999999988764               445566777778999999999999999999986422 


Q ss_pred             ----------------------------------HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          404 ----------------------------------LYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       404 ----------------------------------~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                                                        ....+......|+.++|.+.-.+|++..|..+
T Consensus        69 ~~yr~lI~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~  134 (273)
T 1zbp_A           69 SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  134 (273)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence                                              23345556667899999999999999888654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.71  E-value=1.1  Score=43.97  Aligned_cols=106  Identities=13%  Similarity=0.081  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      +++......+..++..|+|.+|.........-.-..  .+       ...+..+++.....|+..++|.+|...++++..
T Consensus       135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~--~~-------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~  205 (445)
T 4b4t_P          135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS--ME-------MSEKIQFILEQMELSILKGDYSQATVLSRKILK  205 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS--SC-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--cc-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345556778999999999999999998876532211  11       234567778888899999999999999999742


Q ss_pred             ---hCCCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          396 ---CDCHNV----KALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       396 ---~~p~~~----~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                         -.+.++    ..+...|..+...++|.+|-.+|..++..
T Consensus       206 ~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          206 KTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             hhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence               233333    45677788999999999999999988753

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.68  E-value=0.12  Score=54.20  Aligned_cols=59  Identities=24%  Similarity=0.372  Sum_probs=52.4

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  393 (437)
                      .+..++..+..+|+|+.|+.+-++|+.+.|...               .+|+.||.||.++|+|+.|+-..+.+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF---------------~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSF---------------ESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhh---------------HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            566778889999999999999999999998764               77999999999999999999776654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.05  E-value=0.29  Score=44.32  Aligned_cols=60  Identities=15%  Similarity=0.094  Sum_probs=55.9

Q ss_pred             HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          375 ACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       375 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      ..+++.++.++|+..+...++.+|.|++.-..+-+.+.-.|+|+.|...++.+.+++|+.
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~   64 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   64 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            356788999999999999999999999999999999999999999999999999999964

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.88  E-value=0.27  Score=49.08  Aligned_cols=66  Identities=9%  Similarity=-0.035  Sum_probs=59.8

Q ss_pred             hHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 013755          366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD  431 (437)
Q Consensus       366 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  431 (437)
                      ...++.+||....-...+..|..+|.+|+.+.|++...|..+|.+....+++-+|+-+|-++|...
T Consensus       151 ~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~  216 (497)
T 1ya0_A          151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK  216 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC
Confidence            345778889988888899999999999999999999999999999999999999999999998643

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=92.68  E-value=0.88  Score=45.38  Aligned_cols=114  Identities=11%  Similarity=-0.037  Sum_probs=77.4

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCCh--------HHH-HHHH----------------hhhHHHhhhHH
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD--------DEQ-KLVK----------------SLRVSCWLNSA  374 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~--------~~~-~~~~----------------~~~~~~~~nla  374 (437)
                      .+...+..+...|+.++|...|++|+.. |....+.-        ++. ..+.                .....+|...+
T Consensus       215 lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~  293 (493)
T 2uy1_A          215 VYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL  293 (493)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence            3455566677889999999999999999 76532100        000 0000                11124566666


Q ss_pred             HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCCCC
Q 013755          375 ACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIA-DLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       375 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg-~~~~A~~~~~~al~l~P~n~  435 (437)
                      ....+.++.+.|...|.+| ...+.....|...|..-...+ +.+.|...|+++++..|+++
T Consensus       294 ~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~  354 (493)
T 2uy1_A          294 NYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST  354 (493)
T ss_dssp             HHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH
Confidence            6666788899999999999 433335566666666666666 59999999999999888754

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.69  E-value=0.98  Score=45.02  Aligned_cols=80  Identities=15%  Similarity=0.054  Sum_probs=69.5

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ..+...|+..-....+..|...|.+|+.+.|...               ..|+.||.++...+++-+|+-+|.++|....
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G---------------~~~nqLavla~~~~~~l~a~y~y~rsl~~~~  217 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG---------------QPYNQLAILASSKGDHLTTIFYYCRSIAVKF  217 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC---------------chHHHHHHHHhcccccHHHHHHHHHHHhcCC
Confidence            4567889999999999999999999999999875               6699999999999999999999999998776


Q ss_pred             CCHHHHHHHHHHHHH
Q 013755          399 HNVKALYRRAQAYME  413 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~  413 (437)
                      ..+.|.-++...+..
T Consensus       218 Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          218 PFPAASTNLQKALSK  232 (497)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHH
Confidence            678777777776654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=91.37  E-value=2.9  Score=41.72  Aligned_cols=95  Identities=9%  Similarity=0.010  Sum_probs=75.2

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC-CC
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD-CH  399 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~  399 (437)
                      +...-..+.+.|++++|...|++.....- .+             ....|+.+-.+|.+.|++++|.+.+++..+.. .-
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~P-------------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P  173 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGI-QP-------------RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP  173 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CC-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-------------ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            34455678899999999999998776421 11             13567778888999999999999999987653 22


Q ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 013755          400 NVKALYRRAQAYMEIADLILAELDIKKAIE  429 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~  429 (437)
                      +...|..+-.+|.+.|++++|.+.|++.-+
T Consensus       174 d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          174 EEPELAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            577888999999999999999999998754

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=90.58  E-value=0.65  Score=33.97  Aligned_cols=39  Identities=26%  Similarity=0.119  Sum_probs=34.0

Q ss_pred             ChHH-HHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhh
Q 013755          310 NNQG-KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (437)
Q Consensus       310 ~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~  348 (437)
                      +... .+..+..+..+|...=+.|+|++|+.+|.+|++.+
T Consensus         2 ~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l   41 (83)
T 2v6y_A            2 SAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVL   41 (83)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            4444 67788899999999999999999999999999975

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=89.78  E-value=2.4  Score=40.77  Aligned_cols=114  Identities=16%  Similarity=0.070  Sum_probs=79.1

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHh-------------------hccCCCCChHH---------HH---HHHhh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADC-------------------VSEDGSFVDDE---------QK---LVKSL  365 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~-------------------~~~~~~~~~~~---------~~---~~~~~  365 (437)
                      .-....+.|..|.+.|++++-..+.......                   ....+...+.+         |.   ...-+
T Consensus        18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl   97 (394)
T 3txn_A           18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL   97 (394)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778899999999988877766554332                   22222221111         11   11222


Q ss_pred             hHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 013755          366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH------NVKALYRRAQAYMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       366 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  430 (437)
                      +..+-.+||..|+..|+|.+|+..+.+.++.-..      ....+....+.|..++++.++.+.|.+|...
T Consensus        98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~  168 (394)
T 3txn_A           98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT  168 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            3344558899999999999999999998874221      1466788899999999999999999999765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=89.23  E-value=2  Score=42.82  Aligned_cols=92  Identities=12%  Similarity=-0.077  Sum_probs=66.6

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc-CHHHHHHHHHHHHHhCC
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKVLDCDC  398 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~Ai~~~~~al~~~p  398 (437)
                      .+..-+....+.+..+.|...|.+| . .|..   .           ..+|...|..-+..+ +.+.|...|+++++..|
T Consensus       288 lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~---~-----------~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~  351 (493)
T 2uy1_A          288 LRINHLNYVLKKRGLELFRKLFIEL-G-NEGV---G-----------PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP  351 (493)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCC---C-----------HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCC---C-----------hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence            3444555555677899999999999 3 3321   1           245555666665556 59999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 013755          399 HNVKALYRRAQAYMEIADLILAELDIKKA  427 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~a  427 (437)
                      +++..+...+.-...+|+.+.|...|+++
T Consensus       352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          352 DSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88877777777777788888888777775

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=88.24  E-value=1.2  Score=34.91  Aligned_cols=43  Identities=21%  Similarity=0.177  Sum_probs=36.3

Q ss_pred             CCCChH-HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhc
Q 013755          307 WEMNNQ-GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (437)
Q Consensus       307 ~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~  349 (437)
                      .+|+.. ..+..+..+..+|...=..++|++|+.+|..|++++-
T Consensus         6 ~~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~   49 (117)
T 2cpt_A            6 SGMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFL   49 (117)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             ccCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            345555 6778889999999999999999999999999999753

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=86.18  E-value=1.3  Score=32.27  Aligned_cols=40  Identities=25%  Similarity=0.155  Sum_probs=34.7

Q ss_pred             CCh-HHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhh
Q 013755          309 MNN-QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (437)
Q Consensus       309 ~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~  348 (437)
                      |++ ...++.+..+..+|...=+.|+|++|+.+|.+|++.+
T Consensus         9 ~~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l   49 (83)
T 2w2u_A            9 MSAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVL   49 (83)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            444 4567889999999999999999999999999999975

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=85.29  E-value=3.4  Score=34.87  Aligned_cols=28  Identities=11%  Similarity=-0.056  Sum_probs=22.8

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAA  345 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al  345 (437)
                      ...++..|...+..|+++-|..+|+++=
T Consensus        34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           34 SITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            4467888888888888888888888763

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=84.59  E-value=7.3  Score=36.40  Aligned_cols=112  Identities=11%  Similarity=0.049  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHH-HHHHHHhhccCCCCChHHHH--------HH-HhhhHHHhhhHHHHHHhccC
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKK-YNKAADCVSEDGSFVDDEQK--------LV-KSLRVSCWLNSAACCLKLKD  382 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~-y~~al~~~~~~~~~~~~~~~--------~~-~~~~~~~~~nla~~~~~~~~  382 (437)
                      +..+.-+.++..++.|.++++|++|+.+ |.-|+.++.........+..        +. .+.......++..++.....
T Consensus        30 ~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~  109 (336)
T 3lpz_A           30 EQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQP  109 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCT
T ss_pred             cccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence            4467778888899999999999999997 45555544331100000000        00 00000111222333222221


Q ss_pred             H-HHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 013755          383 Y-QGAIELCSKVLDC-------DCHNVKALYRRAQAYMEIADLILAELDI  424 (437)
Q Consensus       383 ~-~~Ai~~~~~al~~-------~p~~~~a~~~~g~~~~~lg~~~~A~~~~  424 (437)
                      - ..=....++++.+       .-.++..+..+|..|.+.++|.+|..+|
T Consensus       110 ~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          110 GEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            0 0112233333332       2246788888999999999999998887

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=84.59  E-value=5.9  Score=39.40  Aligned_cols=85  Identities=9%  Similarity=-0.017  Sum_probs=66.4

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q 013755          332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD-CHNVKALYRRAQA  410 (437)
Q Consensus       332 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~  410 (437)
                      +..++|.+.|.+.....- .+             ....|+.+-.+|.+.|++++|+..+++..+.. .-+...|..+-.+
T Consensus        84 ~~l~~A~~lf~~M~~~G~-~P-------------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~  149 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKV-VP-------------NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFG  149 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTC-CC-------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCC-CC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHH
Confidence            457788888887665321 11             13568888889999999999999999987652 2367888888899


Q ss_pred             HHHhccHHHHHHHHHHHHHh
Q 013755          411 YMEIADLILAELDIKKAIEA  430 (437)
Q Consensus       411 ~~~lg~~~~A~~~~~~al~l  430 (437)
                      |.+.|++++|.+.|++..+.
T Consensus       150 ~~~~g~~~~A~~l~~~M~~~  169 (501)
T 4g26_A          150 FCRKGDADKAYEVDAHMVES  169 (501)
T ss_dssp             HHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHHHhc
Confidence            99999999999999987753

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=84.30  E-value=2.2  Score=44.67  Aligned_cols=59  Identities=24%  Similarity=0.236  Sum_probs=38.4

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHH--------HHhCCCCHHHHHHHHH-------------HHHHhccHHHHHHHHHH
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKV--------LDCDCHNVKALYRRAQ-------------AYMEIADLILAELDIKK  426 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~a--------l~~~p~~~~a~~~~g~-------------~~~~lg~~~~A~~~~~~  426 (437)
                      ..|.++|..+.+.++++.|+.+|.++        |.....+.+.+-.++.             +++.+|++++|++.|.+
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHH
Confidence            56888999999999999999998875        1122344444433333             45556666666666544

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.00  E-value=1.9  Score=42.90  Aligned_cols=68  Identities=18%  Similarity=0.072  Sum_probs=56.9

Q ss_pred             hHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN-------VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       366 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~-------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .+.+++-+=..|+..+.|++|.....++.  .|.+       ...+|..|.++.-.++|.+|.++|..|+...|.+.
T Consensus       230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            35667777888999999999999999985  3322       46678899999999999999999999999888664

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=83.87  E-value=1.7  Score=31.74  Aligned_cols=40  Identities=18%  Similarity=0.128  Sum_probs=34.1

Q ss_pred             CChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhh
Q 013755          309 MNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (437)
Q Consensus       309 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~  348 (437)
                      |+....+..+..+..+|...=..|+|++|+.+|..|++.+
T Consensus         4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l   43 (85)
T 2v6x_A            4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYL   43 (85)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4444567788889999999999999999999999999975

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.08  E-value=6.6  Score=30.36  Aligned_cols=74  Identities=9%  Similarity=-0.001  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhcc-------CCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHH
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-------DGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG  385 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~-------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~  385 (437)
                      ...+.+..+.+.|...=..|+-+.|+.+|++.+..+..       .+....+.|+..+.+......||..+..+++....
T Consensus        17 ~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~   96 (116)
T 2dl1_A           17 EAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEK   96 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44566777777777777789999999999988886532       22345688999999999989999988877765544


Q ss_pred             H
Q 013755          386 A  386 (437)
Q Consensus       386 A  386 (437)
                      .
T Consensus        97 ~   97 (116)
T 2dl1_A           97 G   97 (116)
T ss_dssp             H
T ss_pred             c
Confidence            3

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=82.04  E-value=5.6  Score=29.55  Aligned_cols=37  Identities=19%  Similarity=0.126  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhc
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~  349 (437)
                      ..+..+..+...|...=+.|+|++|+.+|..|++.+-
T Consensus        10 ~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~   46 (93)
T 1wfd_A           10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLL   46 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            3456788889999999999999999999999999763

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=81.81  E-value=4.8  Score=38.56  Aligned_cols=63  Identities=6%  Similarity=-0.026  Sum_probs=52.4

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ...+...+..+...|++.+|+..+.+++...|.+.               .++..+-.+|...|+..+|+..|+++-.
T Consensus       171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E---------------~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE---------------PLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34556677888999999999999999999987653               4677888899999999999999988643

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=81.72  E-value=2.5  Score=46.88  Aligned_cols=104  Identities=11%  Similarity=0.067  Sum_probs=73.4

Q ss_pred             HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC-CC-hHHHHHH------HhhhHHHhhhHHHHHHhccCHHHHHHHHHHH
Q 013755          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-FV-DDEQKLV------KSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (437)
Q Consensus       322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~-~~-~~~~~~~------~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  393 (437)
                      +-+|..++..|++++|..+|++|..-...... .. ......+      .......|+.+...+.+.+.++.+++....|
T Consensus       846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA  925 (1139)
T 4fhn_B          846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA  925 (1139)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66889999999999999999998543322111 11 0111111      1223356777788888899999999999999


Q ss_pred             HHhCCCC-H----HHHHHHHHHHHHhccHHHHHHHHH
Q 013755          394 LDCDCHN-V----KALYRRAQAYMEIADLILAELDIK  425 (437)
Q Consensus       394 l~~~p~~-~----~a~~~~g~~~~~lg~~~~A~~~~~  425 (437)
                      |+..+.+ .    ..|.++=+++..+++|++|-..+.
T Consensus       926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            9876433 2    257788899999999999976664

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=80.70  E-value=4.6  Score=29.58  Aligned_cols=34  Identities=21%  Similarity=0.167  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhh
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV  348 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~  348 (437)
                      ...+..+..+|..+=+.|+|++|+.+|..|++.+
T Consensus        13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~l   46 (86)
T 4a5x_A           13 STAAATVLKRAVELDSESRYPQALVCYQEGIDLL   46 (86)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3567778889999999999999999999999875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=80.22  E-value=6.6  Score=40.98  Aligned_cols=26  Identities=12%  Similarity=0.157  Sum_probs=22.9

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHH
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKA  344 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~a  344 (437)
                      ..++..|..+.+.++++.|+++|.++
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            45678899999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	437
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	1e-22
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	2e-12
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	6e-21
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	7e-09
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	1e-19
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	2e-19
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	2e-09
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	2e-18
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	2e-13
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	9e-18
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	6e-09
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-17
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	2e-17
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	4e-16
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	7e-07
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	8e-16
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	3e-05
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	1e-15
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	6e-12
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	1e-15
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	9e-04
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	1e-13
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	5e-05
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	1e-12
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	9e-05
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	2e-11
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	2e-10
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	0.003
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	7e-10
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	1e-09
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-09
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	3e-07
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	6e-07
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	6e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	5e-04
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	3e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	7e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	5e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	8e-04

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 90.2 bits (223), Expect = 1e-22
 Identities = 48/111 (43%), Positives = 62/111 (55%), Gaps = 3/111 (2%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVAT 103
            + G+ K + K G     P  G  V +HYVGTL +GTKFDS+RDR D  +F LG G V  
Sbjct: 8   KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 67

Query: 104 GLDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
           G D G+ TM K E A   FT+ S+  +G  G    +P  + + FEVEL  W
Sbjct: 68  GWDLGVATMTKGEVA--EFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW 116

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 61.6 bits (149), Expect = 2e-12
 Identities = 41/146 (28%), Positives = 59/146 (40%), Gaps = 33/146 (22%)

Query: 157 VDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
           +D++  KDGG++K I ++G+    P     V V Y                         
Sbjct: 2   IDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHY------------------------- 36

Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
             +  LE+GT F+    D      F      VI G D   ATM K E A  TI  +YG+G
Sbjct: 37  --VGTLENGTKFDSS-RDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYG 93

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDF 300
           +         IP  A L +EVE+ ++
Sbjct: 94  D---AGSPPKIPGGATLIFEVELFEW 116

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (211), Expect = 6e-21
 Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 3/111 (2%)

Query: 44  GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVAT 103
            + G+ K + + G   + P  GD V +HY G LLDGTKFDS+ DR D  +F LG G+V  
Sbjct: 9   QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 68

Query: 104 GLDNGIITMKKRECAVFTFTLPSELRFGVEG-RDSLPPNSVVQFEVELVSW 153
             D  I TMK     V   T   E  +G  G    +PPN+ + FEVEL  +
Sbjct: 69  AWDIAIATMKV--GEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 117

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 7e-09
 Identities = 40/149 (26%), Positives = 55/149 (36%), Gaps = 33/149 (22%)

Query: 157 VDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDV 214
           VD+S  +D G++K I  +G     P   D V V Y   L DGT                 
Sbjct: 3   VDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTK---------------- 46

Query: 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFG 274
                            D +    F   + +VI   D   ATMK  E   +T   EY +G
Sbjct: 47  ------------FDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYG 94

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDFIKE 303
           +  +      IP  A L +EVE+ +F  E
Sbjct: 95  SAGSP---PKIPPNATLVFEVELFEFKGE 120

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 83.9 bits (206), Expect = 1e-19
 Identities = 49/133 (36%), Positives = 75/133 (56%)

Query: 304 KVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVK 363
           K  WEM+ + K+E A   KE+G + FK GKY +A  +Y K    +  +    + E K  +
Sbjct: 1   KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASE 60

Query: 364 SLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELD 423
           S  ++ +LN A C LKL++Y  A+E C K L  D  N K LYRR +A + + +   A+ D
Sbjct: 61  SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD 120

Query: 424 IKKAIEADPQNRN 436
            +K +E +PQN+ 
Sbjct: 121 FEKVLEVNPQNKA 133

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 81.0 bits (199), Expect = 2e-19
 Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 3/110 (2%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + G+ K + + G   +TP  GD V +HY G L +G KFDS+ DR +P  F +G GQV   
Sbjct: 3   DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 62

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            D G+ TMKK E          E  +G  G    +P N+ + FEVEL+ +
Sbjct: 63  WDIGVATMKKGEIC--HLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF 110

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 52.8 bits (126), Expect = 2e-09
 Identities = 39/140 (27%), Positives = 55/140 (39%), Gaps = 31/140 (22%)

Query: 161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARL 220
           KD G++K +   G  + +P   D V V Y   L +G                        
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKK---------------------- 39

Query: 221 EDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKR 280
                     +D  +P  F   + QVI   D   ATMKK E   +    EY +G   +  
Sbjct: 40  ------FDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGATGS-- 91

Query: 281 DLATIPSCAKLYYEVEMMDF 300
            L  IPS A L++EVE++DF
Sbjct: 92  -LPKIPSNATLFFEVELLDF 110

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 78.2 bits (192), Expect = 2e-18
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 43  LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVA 102
           L + GI ++  + G  +  P  G  V IH  G    G  FD     +     +     + 
Sbjct: 5   LEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGR-CGGRVFDCRDVAFTVGEGED--HDIP 61

Query: 103 TGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSL--PPNSVVQFEVELVSW 153
            G+D  +  M++ E       L     FG  G+      PN+ + +EV L S+
Sbjct: 62  IGIDKALEKMQREEQC--ILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF 112

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 64.3 bits (156), Expect = 2e-13
 Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 33/145 (22%)

Query: 158 DLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYI 217
           DL +DGGI+++   +GE  ++P +   V +                    E       + 
Sbjct: 3   DLLEDGGIIRRTKRRGEGYSNPNEGARVQIHL------------------EGRCGGRVFD 44

Query: 218 ARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277
            R    TV E + +              +  G+D+    M++EE  I+ +   YGFG  E
Sbjct: 45  CRDVAFTVGEGEDH-------------DIPIGIDKALEKMQREEQCILHLGPRYGFG--E 89

Query: 278 AKRDLATIPSCAKLYYEVEMMDFIK 302
           A +    I   A+L YEV +  F K
Sbjct: 90  AGKPKFGIEPNAELIYEVTLKSFEK 114

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (188), Expect = 9e-18
 Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 11/115 (9%)

Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRD-------RYDPLTFKLGTG 99
              K +LK G   + P+ GD V   Y GTL DGT FD+             PL+FK+G G
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 100 QVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVS 152
           +V  G D  ++TM   +       +  E  +G +G+    +PPN+ + FEVELV 
Sbjct: 62  KVIRGWDEALLTMS--KGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVD 114

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 6e-09
 Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 23/137 (16%)

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
              K +L+KG++   P   D V   Y   L DGT+     +                   
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQ------------------- 42

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
                K     +PL F     +VI G D    TM K E A + I  E+ +G  +  +  A
Sbjct: 43  --TSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQPDA 98

Query: 284 TIPSCAKLYYEVEMMDF 300
            IP  AKL +EVE++D 
Sbjct: 99  KIPPNAKLTFEVELVDI 115

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.8 bits (190), Expect = 1e-17
 Identities = 49/130 (37%), Positives = 79/130 (60%)

Query: 307 WEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLR 366
           WEMN++ K+E +   KE G + FK GKY++A  +Y K    +  + SF ++E +  ++LR
Sbjct: 2   WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR 61

Query: 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKK 426
           ++  LN A C LKL+ +  AIE C+K L+ D +N K L RR +A++ + D  LA  D +K
Sbjct: 62  LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQK 121

Query: 427 AIEADPQNRN 436
            ++  P N+ 
Sbjct: 122 VLQLYPNNKA 131

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 77.0 bits (188), Expect = 2e-17
 Identities = 48/135 (35%), Positives = 70/135 (51%), Gaps = 1/135 (0%)

Query: 303 EKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD-DEQKL 361
           +K  ++  ++ K+++A   KEEGN  FK  +   A  KY +A D       + D      
Sbjct: 2   KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 61

Query: 362 VKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAE 421
            K++ +SC LN A C  K KDY  AI+  SKVL  D +NVKALY+   A M    L  A+
Sbjct: 62  KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK 121

Query: 422 LDIKKAIEADPQNRN 436
            ++ KA   +P N +
Sbjct: 122 ENLYKAASLNPNNLD 136

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 74.5 bits (182), Expect = 4e-16
 Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 4/94 (4%)

Query: 60  DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAV 119
           + P+  D V ++Y GTL+DG +FD++  R +PL+F+L    V  G   G+  +KK     
Sbjct: 120 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGG--K 175

Query: 120 FTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSW 153
               +P EL +G  G   +PPNS + F+VEL+  
Sbjct: 176 IKLVIPPELAYGKAGVPGIPPNSTLVFDVELLDV 209

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 47.5 bits (112), Expect = 7e-07
 Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 12/114 (10%)

Query: 187 VKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQV 246
                ++  G   A    + V        Y   L DG  F+     GE         + V
Sbjct: 108 GLVYQVVEAGKGEAPKDSDTVVVN-----YKGTLIDGKEFDNSYTRGEP---LSFRLDGV 159

Query: 247 IAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300
           I G       +KK     + I  E  +G       +  IP  + L ++VE++D 
Sbjct: 160 IPGWTEGLKNIKKGGKIKLVIPPELAYGK----AGVPGIPPNSTLVFDVELLDV 209

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.9 bits (173), Expect = 8e-16
 Identities = 43/108 (39%), Positives = 56/108 (51%), Gaps = 3/108 (2%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
             +K   +  G     P+ GD VTIHY GTL +G KFDS+ DR  P    +G GQV  G 
Sbjct: 6   GNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGW 65

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVS 152
           D GI  +   E A    T+P    +G  G    +PPNS + F+VEL+ 
Sbjct: 66  DVGIPKLSVGEKA--RLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (96), Expect = 3e-05
 Identities = 26/138 (18%), Positives = 42/138 (30%), Gaps = 31/138 (22%)

Query: 162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLE 221
           +G +    +  G+    P   D V + Y   L +G     + + G  F            
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQ----------- 53

Query: 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRD 281
                                  QVI G D     +   E A +TI   Y +G       
Sbjct: 54  -----------------CNIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFP-- 94

Query: 282 LATIPSCAKLYYEVEMMD 299
              IP  + L ++VE++ 
Sbjct: 95  -GLIPPNSTLVFDVELLK 111

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (173), Expect = 1e-15
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 7/114 (6%)

Query: 45  NSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATG 104
           + GI +++   G  +  P  G  V +   G   D       +        +     +  G
Sbjct: 7   DGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFD---QRELRFEIGEGENLDLPYG 63

Query: 105 LDNGIITMKKRECAVFTFTLPSELRFGVEGRDSL--PPNSVVQFEVELVSWITV 156
           L+  I  M+K E +     L     FG  G++    PPN+ +++E+ L S+   
Sbjct: 64  LERAIQRMEKGEHS--IVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKA 115

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 6e-12
 Identities = 34/149 (22%), Positives = 54/149 (36%), Gaps = 35/149 (23%)

Query: 158 DLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVS 215
           DL+  +DGGI+++I  +GE  A P +   V V  +    D                    
Sbjct: 1   DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFD---------------- 44

Query: 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
                              +      +   +  GL+R    M+K E +IV +   Y FG 
Sbjct: 45  ---------------QRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFG- 88

Query: 276 VEAKRDLATIPSCAKLYYEVEMMDFIKEK 304
               ++   IP  A+L YE+ +  F K K
Sbjct: 89  -SVGKEKFQIPPNAELKYELHLKSFEKAK 116

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 1e-15
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 47  GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLD 106
           G++ + +  G     P+ G    +HY G L DG KFDS+RDR  P  F LG  +V  G +
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 107 NGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
            G+  M   +      T+  +  +G  G    +PP++ + F+VEL+  
Sbjct: 61  EGVAQMSVGQR--AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 9e-04
 Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 31/137 (22%)

Query: 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDG 223
           G+  + +  G+    P      +V Y  ML DG     + +    F              
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFK------------- 47

Query: 224 TVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLA 283
                          F+  +++VI G +   A M   + A +TI+ +Y +G         
Sbjct: 48  ---------------FMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHP---G 89

Query: 284 TIPSCAKLYYEVEMMDF 300
            IP  A L ++VE++  
Sbjct: 90  IIPPHATLVFDVELLKL 106

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 67.6 bits (164), Expect = 1e-13
 Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
            D VT+ Y G L+DGT FDST     P TF     QV  G    +  M           +
Sbjct: 116 SDTVTVEYTGRLIDGTVFDSTEKTGKPATF--QVSQVIPGWTEALQLMPAGSTW--EIYV 171

Query: 125 PSELRFGVEGR-DSLPPNSVVQFEVELVSW 153
           PS L +G       + PN  + F++ L+S 
Sbjct: 172 PSGLAYGPRSVGGPIGPNETLIFKIHLISV 201

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 216 YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGN 275
           Y  RL DGTVF+       +P  F     QVI G       M       + +     +G 
Sbjct: 123 YTGRLIDGTVFDST-EKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIYVPSGLAYGP 179

Query: 276 VEAKRDLATIPSCAKLYYEVEMMDFIK 302
                    I     L +++ ++   K
Sbjct: 180 RSVG---GPIGPNETLIFKIHLISVKK 203

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 63.3 bits (153), Expect = 1e-12
 Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 22/146 (15%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+  + +  G     P   D+  +HY G L DGT FDS+R+R  P        +V  G 
Sbjct: 34  SGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKP--TTFRPNEVIKGW 91

Query: 106 DNGIITMKKRECAVFTFTLPSELRFGVEGR-DSLPPNSVVQFEVELVSWITVVDLSKDGG 164
              +  M++ +   +   +P +L +GV G    +PP S ++F+VEL+S            
Sbjct: 92  TEALQLMREGDR--WRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISI----------- 138

Query: 165 IVKKILEKGERDASPGDLDEVLVKYQ 190
                 + G +  +  ++DE+L K +
Sbjct: 139 ------KDGGKGRTAEEVDEILRKAE 158

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 40.6 bits (94), Expect = 9e-05
 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 245 QVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEK 304
           +VI G       M++ +   + I ++  +G          IP  + L ++VE++     K
Sbjct: 86  EVIKGWTEALQLMREGDRWRLFIPYDLAYG---VTGGGGMIPPYSPLEFDVELISI---K 139

Query: 305 VPWEMNNQGKIEAAGRKKEE 324
              +     +++   RK EE
Sbjct: 140 DGGKGRTAEEVDEILRKAEE 159

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.1 bits (144), Expect = 2e-11
 Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 1/139 (0%)

Query: 299 DFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDE 358
           DF ++      +    +  +   K  GN  FK+  +E A KKY K    V    +  +D 
Sbjct: 8   DFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDA 67

Query: 359 QKL-VKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADL 417
               ++ + +SC LN  AC LK+ D+QGA++ C + L+ D  N KALYRRAQ +  + + 
Sbjct: 68  DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY 127

Query: 418 ILAELDIKKAIEADPQNRN 436
             A  D+KKA E  P+++ 
Sbjct: 128 DQALADLKKAQEIAPEDKA 146

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 57.1 bits (137), Expect = 2e-10
 Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 18/119 (15%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRD-------------RYDPLTFKLGTGQVATGLDNGIIT 111
           G ++ + Y+G L  G  FD++ +              Y+PL F +G GQ+  G +  ++ 
Sbjct: 5   GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64

Query: 112 MKKRECAVFTFTLPSELRFGVEGRD---SLPPNSVVQFEVELVSWITVVDLSKDGGIVK 167
           M+       T  +P+E  +G         +P ++  + + E    + ++       I +
Sbjct: 65  MEV--GDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKEADFEPEEGMVILAEGIPATITE 121

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 12/73 (16%)

Query: 214 VSYIARLEDGTVFE------------KKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEE 261
           V YI +LE G VF+                   +PLEF+  E Q+I G +     M+  +
Sbjct: 10  VDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGD 69

Query: 262 WAIVTINHEYGFG 274
              V I  E  +G
Sbjct: 70  EKTVKIPAEKAYG 82

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 7e-10
 Identities = 29/179 (16%), Positives = 55/179 (30%), Gaps = 27/179 (15%)

Query: 275 NVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKY 334
            ++A  +L  +   A+++              +          A        + ++ G  
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAA--------YLRALSLSPNHAVVHGNLACVYYEQGLI 253

Query: 335 ERAGKKYNKA--------------ADCVSEDGSFVDDEQKLVKSLRVS-----CWLNSAA 375
           + A   Y +A              A+ + E GS  + E     +LR+         N A 
Sbjct: 254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313

Query: 376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
              +  + + A+ L  K L+       A    A    +   L  A +  K+AI   P  
Sbjct: 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 5e-07
 Identities = 10/64 (15%), Positives = 23/64 (35%)

Query: 371 LNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430
           +  A    +  D++ A   C ++   +  N   L   +  + +   L  +      AI+ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 431 DPQN 434
           +P  
Sbjct: 63  NPLL 66

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 36/283 (12%), Positives = 75/283 (26%), Gaps = 33/283 (11%)

Query: 170 LEKGERDASPGDLDEVLVKYQ-------------VMLGDGTMVAKTPEEGVEFYLKDVS- 215
           +E   R+   GD +                    ++L       +  +    F    +  
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 216 ----YIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEY 271
                 A    G V++++G   E    +          +D           A        
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 272 GFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKN 331
            + +                     +    + K  +    + +   A      G +    
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182

Query: 332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS 391
           G+   A   + KA   V+ D +F+D             ++N      + + +  A+    
Sbjct: 183 GEIWLAIHHFEKA---VTLDPNFLD------------AYINLGNVLKEARIFDRAVAAYL 227

Query: 392 KVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
           + L    ++       A  Y E   + LA    ++AIE  P  
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 20/143 (13%), Positives = 37/143 (25%), Gaps = 20/143 (13%)

Query: 279 KRDLATIPSCAKLYYE-----VEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGK 333
           +R +   P     Y        E     + +  +    +     A       N+  + G 
Sbjct: 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320

Query: 334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393
            E A + Y KA +   E                 +   N A+   +    Q A+    + 
Sbjct: 321 IEEAVRLYRKALEVFPEF---------------AAAHSNLASVLQQQGKLQEALMHYKEA 365

Query: 394 LDCDCHNVKALYRRAQAYMEIAD 416
           +        A         E+ D
Sbjct: 366 IRISPTFADAYSNMGNTLKEMQD 388

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 54.5 bits (130), Expect = 7e-10
 Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 15/118 (12%)

Query: 46  SGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGL 105
           SG+       G        G  +  HYVG L +G  FDS+ +R  PLTF++G G+V  G 
Sbjct: 8   SGLAFCDKVVG-YGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGW 66

Query: 106 D------NGIITMKKRECAVFTFTLPSELRFGVEG------RDSLPPNSVVQFEVELV 151
           D      +GI  M        T  +P EL +G  G         +PP SV+ F++E +
Sbjct: 67  DQGILGSDGIPPMLTGGKR--TLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 52.7 bits (126), Expect = 1e-09
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 65  GDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTL 124
           GD   I + G  +D  K  S   +   LT   G+     G + G+I MK  +      T 
Sbjct: 5   GDIAIIDFTGI-VDNKKLASASAQNYELTI--GSNSFIKGFETGLIAMKVNQKKTLALTF 61

Query: 125 PSELRFGVEGRDSLPPNSVVQFEVELVS 152
           P    + V+       +  V FEV L +
Sbjct: 62  P--SDYHVKE----LQSKPVTFEVVLKA 83

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.7 bits (133), Expect = 1e-09
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 15/120 (12%)

Query: 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAAC 376
           +A   KE+GN LF   KY  A   Y +A                         + N A C
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALC 47

Query: 377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
            LK++  + A+  C + L+ D  +VKA +   Q  +E+     A  ++++A     + R 
Sbjct: 48  YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 8/117 (6%)

Query: 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACC 377
           A ++KE GN  +K   ++ A K Y+KA +    + +++ ++         + +       
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQA--------AVYFEKGDYN 55

Query: 378 LKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
              +  + AIE+  +  +      KA  R   +Y +      A     K++      
Sbjct: 56  KCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 3e-07
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 15/125 (12%)

Query: 312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWL 371
            G ++ A   K + N  FK   YE A K Y++A +                       + 
Sbjct: 4   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS---------------NAIYYG 48

Query: 372 NSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431
           N +   L+ + Y  A+   ++ ++ D   +K  YRRA + M +     A  D +  ++  
Sbjct: 49  NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 108

Query: 432 PQNRN 436
           P +++
Sbjct: 109 PHDKD 113

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.8 bits (115), Expect = 6e-07
 Identities = 10/128 (7%), Positives = 31/128 (24%), Gaps = 15/128 (11%)

Query: 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFV---------------DDEQKLVKSLRVSC 369
             LL +      +G +     + + ++   V                    L ++  +  
Sbjct: 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFR 244

Query: 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429
              S      L+    + +   ++   +   +  +    +A   +               
Sbjct: 245 CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304

Query: 430 ADPQNRNH 437
            DP    +
Sbjct: 305 VDPMRAAY 312

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (107), Expect = 6e-07
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 15/119 (12%)

Query: 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA 375
           E     KE+GN     G  + A + Y++A                         + N +A
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKL---------------DPHNHVLYSNRSA 45

Query: 376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434
              K  DYQ A E   K +D      K   R+A A   +     A+   ++ ++ +  N
Sbjct: 46  AYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 104

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 1e-06
 Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 18/117 (15%)

Query: 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK 379
               EG L      ++ A   ++   D  S                      N       
Sbjct: 7   SLWNEGVLAADKKDWKGALDAFSAVQDPHSR------------------ICFNIGCMYTI 48

Query: 380 LKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
           LK+   A +  ++ ++ D H   A ++R   Y +     LA  D+K+A+     N+ 
Sbjct: 49  LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL 105

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 372 NSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431
           N        KD++GA++  S V D    + +  +     Y  + ++  AE    ++I  D
Sbjct: 10  NEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 66

Query: 432 PQNRNH 437
                 
Sbjct: 67  KHLAVA 72

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 44.7 bits (104), Expect = 3e-06
 Identities = 21/134 (15%), Positives = 40/134 (29%), Gaps = 14/134 (10%)

Query: 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNS 373
           ++  A     +       G+Y+ A     +A +      +   +E          C    
Sbjct: 5   EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGL 61

Query: 374 AACCLKLKDYQGAIELCSKVLD-----------CDCHNVKALYRRAQAYMEIADLILAEL 422
           A     L+ +  A+    K L                 + A+Y RA A   +     A  
Sbjct: 62  AEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP 121

Query: 423 DIKKAIEADPQNRN 436
           + KK +E   + + 
Sbjct: 122 EFKKVVEMIEERKG 135

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 12/68 (17%), Positives = 24/68 (35%)

Query: 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429
                   L+  D   A+ L    +  D  +++A         E    +LA   +++ +E
Sbjct: 22  PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE 81

Query: 430 ADPQNRNH 437
             P N+  
Sbjct: 82  LKPDNQTA 89

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 8/68 (11%), Positives = 22/68 (32%)

Query: 369 CWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAI 428
            W    A        + A+    + L+     +++ Y    + + +     A     +A+
Sbjct: 208 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 267

Query: 429 EADPQNRN 436
               ++R 
Sbjct: 268 NMQRKSRG 275

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 7e-04
 Identities = 18/115 (15%), Positives = 34/115 (29%), Gaps = 15/115 (13%)

Query: 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD 382
           EEG    + G    A   +  A   V +D   ++             W        + + 
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAA---VQQDPKHME------------AWQYLGTTQAENEQ 68

Query: 383 YQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRNH 437
              AI    + L+    N  AL   A ++   +    A   ++  +   P   + 
Sbjct: 69  ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 123

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 20/130 (15%)

Query: 325 GNLLFKNGKYERAGKKYNKA--------------ADCVSEDGSFVDDEQKLVKSL----- 365
             +L ++ + ERA K    A                 +      + +E   + ++     
Sbjct: 50  RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 109

Query: 366 -RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDI 424
                W +       L+D    +E  + +L+ D  N  A   R     E          +
Sbjct: 110 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV 169

Query: 425 KKAIEADPQN 434
            + ++ D +N
Sbjct: 170 DQLLKEDVRN 179

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 8e-04
 Identities = 14/113 (12%), Positives = 29/113 (25%), Gaps = 14/113 (12%)

Query: 326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG 385
           N L       +  KK+                      +     W           D + 
Sbjct: 7   NELVSVEDLLKFEKKFQSE----------KAAGSVSKSTQFEYAWCLVRTR--YNDDIRK 54

Query: 386 AIELCSKVLDC--DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN 436
            I L  ++L           ++  A     + +   A   ++  ++ +PQN  
Sbjct: 55  GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	437
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.93
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.93
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.93
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.93
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.93
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.92
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.92
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.9
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.89
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.89
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.89
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.89
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.88
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.88
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.86
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.86
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.86
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.86
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.83
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.82
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.79
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.78
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.78
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.78
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.76
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.75
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.73
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.73
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.55
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.54
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.54
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.52
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.52
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.49
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.41
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.41
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.39
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.38
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.28
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.27
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.27
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.26
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.25
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.24
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.2
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.19
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.09
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	99.08
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.05
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.04
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.01
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.0
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	99.0
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.0
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.99
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.99
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.96
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	98.94
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.84
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.84
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.81
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.8
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.66
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.66
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.53
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.45
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.4
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.38
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.36
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.35
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.23
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.21
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.99
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.93
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	97.91
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.8
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.72
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.72
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	97.68
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.58
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.35
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.92
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	90.3
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	88.27

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=1.8e-26  Score=185.33  Aligned_cols=110  Identities=44%  Similarity=0.724  Sum_probs=104.9

Q ss_pred             ecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEE
Q 013755           43 LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTF  122 (437)
Q Consensus        43 ~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~  122 (437)
                      .+++||+|+++++|+|+.+|..||.|+|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++|  
T Consensus         7 ~~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~--   84 (118)
T d1r9ha_           7 KKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEF--   84 (118)
T ss_dssp             TCCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEE--
T ss_pred             cCCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccccceeeeeeccCcceeeeeeeeeeeecCCceEEE--
Confidence            367999999999999977899999999999999999999999999889999999999999999999999999999999  


Q ss_pred             ecCCCCCCCCCCCC-CCCCCCcEEEEEEEecee
Q 013755          123 TLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (437)
Q Consensus       123 ~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~  154 (437)
                      +|||++|||..+.+ .||++++++|+|+|+++.
T Consensus        85 ~ipp~laYG~~g~~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          85 TIRSDYGYGDAGSPPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             EECHHHhCCcCCCCCccCcCCcEEEEEEEEEEe
Confidence            99999999999987 799999999999999874

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.6e-26  Score=183.42  Aligned_cols=110  Identities=41%  Similarity=0.675  Sum_probs=104.7

Q ss_pred             ecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEE
Q 013755           43 LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTF  122 (437)
Q Consensus        43 ~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~  122 (437)
                      .+++||+|+++++|+|...|..||.|+|||++++.||++|+||++.+.|+.|.+|.+++++||+++|.+|++|++++|  
T Consensus         8 ~~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~--   85 (120)
T d1q1ca1           8 KQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHI--   85 (120)
T ss_dssp             SCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEE--
T ss_pred             CCCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEeccccccceeeecCCCceeeeeeeeeccccCCcEEEE--
Confidence            367999999999999977799999999999999999999999999889999999999999999999999999999999  


Q ss_pred             ecCCCCCCCCCCCC-CCCCCCcEEEEEEEecee
Q 013755          123 TLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (437)
Q Consensus       123 ~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~  154 (437)
                      +|||++|||..+.+ .||++++++|+|+|+++.
T Consensus        86 ~ip~~laYG~~g~~~~IPp~s~LifeIeLl~v~  118 (120)
T d1q1ca1          86 TCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK  118 (120)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             EECHHHhCCCcCCCCCCCcCCcEEEEEEEEEEe
Confidence            99999999999876 899999999999999874

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.93  E-value=2.2e-26  Score=183.02  Aligned_cols=108  Identities=39%  Similarity=0.676  Sum_probs=84.0

Q ss_pred             cCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEe
Q 013755           44 GNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFT  123 (437)
Q Consensus        44 ~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~  123 (437)
                      +++||+|+++++|+|...|..||.|+|||++++.||++|++|+..+.|+.|.+|.+++++||+++|.+|++|++++|  +
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~~~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~--~   79 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHL--L   79 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEE--E
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEEecceeeeeecCCCcEEeeeeeeehhccCCcEEEE--E
Confidence            57899999999999967799999999999999999999999999889999999999999999999999999999999  9


Q ss_pred             cCCCCCCCCCCCC-CCCCCCcEEEEEEEece
Q 013755          124 LPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (437)
Q Consensus       124 ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~  153 (437)
                      |||++|||..+.+ .||++++++|+|+|+++
T Consensus        80 ip~~layG~~g~~~~IPp~s~lif~ieLl~i  110 (111)
T d1kt1a2          80 CKPEYAYGATGSLPKIPSNATLFFEVELLDF  110 (111)
T ss_dssp             C----CCCTTTCTTTSCTTCCCEEEEEEEEE
T ss_pred             ECHHHhCCCCCCCCcCCcCCeEEEEEEEEEE
Confidence            9999999999876 89999999999999886

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1e-25  Score=178.09  Aligned_cols=105  Identities=33%  Similarity=0.668  Sum_probs=100.3

Q ss_pred             CeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCC
Q 013755           47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPS  126 (437)
Q Consensus        47 g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~  126 (437)
                      ||+|+++++|+|...|+.||.|+|||++++.||++|++|++++.|+.|.+|.+++++||+++|.+|++|++++|  +|||
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~--~ip~   78 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKL--TISP   78 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEE--EECG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeeccceeeeEeeCcchhheeehhhhcCccCCCEEEE--EECH
Confidence            89999999999955689999999999999999999999998889999999999999999999999999999999  9999


Q ss_pred             CCCCCCCCCC-CCCCCCcEEEEEEEece
Q 013755          127 ELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (437)
Q Consensus       127 ~~ayg~~~~~-~i~~~~~~~f~v~l~~~  153 (437)
                      ++|||..+.+ .||++++++|+|+|+++
T Consensus        79 ~laYG~~g~~~~IPp~s~lif~ieL~~v  106 (107)
T d2ppna1          79 DYAYGATGHPGIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             GGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             HHhCCCCCCCCCCCcCCeEEEEEEEEEE
Confidence            9999999976 89999999999999886

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.8e-25  Score=178.57  Aligned_cols=110  Identities=39%  Similarity=0.605  Sum_probs=104.2

Q ss_pred             eecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEE
Q 013755           42 GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFT  121 (437)
Q Consensus        42 ~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~  121 (437)
                      .++++||+|+++++|+|...|+.||.|+|||++++.||++|++++..+.|+.|.++.+++++||+++|.+|++|++++| 
T Consensus         2 ~~~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~~~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~-   80 (113)
T d1yata_           2 EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARL-   80 (113)
T ss_dssp             EECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEE-
T ss_pred             cCccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEeccccCCceEeeeeccCceeeehhhhcccccCCCEEEE-
Confidence            3578999999999999955689999999999999999999999999889999999999999999999999999999999 


Q ss_pred             EecCCCCCCCCCCCC-CCCCCCcEEEEEEEece
Q 013755          122 FTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW  153 (437)
Q Consensus       122 ~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~  153 (437)
                       +|||++|||..+.+ .||++++++|+|+|+++
T Consensus        81 -~iP~~laYG~~g~~~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          81 -TIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             -EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             -EechHHeecCcCCCCccCcCCeEEEEEEEEEe
Confidence             99999999999977 79999999999999876

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.5e-25  Score=198.80  Aligned_cols=111  Identities=32%  Similarity=0.628  Sum_probs=106.0

Q ss_pred             CCceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCce
Q 013755           38 GEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKREC  117 (437)
Q Consensus        38 ~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~  117 (437)
                      ...+..+++|++|+++++|+| +.|..||.|+|||++++.||++|++|+.++.|+.|.+|  ++|+||+++|.+|++|++
T Consensus        99 ~~~v~~~~sGl~y~v~~~G~G-~~p~~gd~v~v~y~g~l~dG~~fd~s~~~~~p~~~~~~--~vi~g~~e~l~~m~~G~k  175 (210)
T d1q6ha_          99 EKGVKTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGK  175 (210)
T ss_dssp             STTEEECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCE
T ss_pred             cCceEEccCceEEEEeeCCCC-CCCCCCceEEEEEEEEEcCCCEEeecccCCCcceeccC--ccchhHHHHHhhccCCCE
Confidence            344678999999999999999 99999999999999999999999999999999999997  799999999999999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCCCCCCcEEEEEEEece
Q 013755          118 AVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSW  153 (437)
Q Consensus       118 ~~~~~~ip~~~ayg~~~~~~i~~~~~~~f~v~l~~~  153 (437)
                      +++  +|||++|||+.+.+.|||+++|+|+|+|+++
T Consensus       176 ~~~--~iP~~laYG~~g~~~Ippns~Lvfevel~~i  209 (210)
T d1q6ha_         176 IKL--VIPPELAYGKAGVPGIPPNSTLVFDVELLDV  209 (210)
T ss_dssp             EEE--EECGGGTTTTTCBTTBCTTCCEEEEEEEEEE
T ss_pred             EEE--EECHHHCcCCCCCCCCCcCCcEEEEEEEEEE
Confidence            999  9999999999999999999999999999986

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=2.9e-25  Score=196.12  Aligned_cols=111  Identities=31%  Similarity=0.471  Sum_probs=104.8

Q ss_pred             CceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceE
Q 013755           39 EERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA  118 (437)
Q Consensus        39 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~  118 (437)
                      ..+.++++||+|+++++|+| .+|..||.|.|||++++.||++|++|+.++.|+.|.+|  ++|+||+++|.+|++|+++
T Consensus        91 ~~v~~~~sGl~y~v~~~G~G-~~p~~~d~v~v~y~g~l~dg~~f~~s~~~~~p~~~~~~--~~i~G~~e~l~~m~~G~~~  167 (204)
T d1fd9a_          91 PGVVVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTW  167 (204)
T ss_dssp             TTEEECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEE
T ss_pred             CceEEecCccEEEEeecCCC-cccCCCCEEEEEEEEEECCCCEecccccCCCCceecCC--ccchhHHHHhcCCCCCCEE
Confidence            35677999999999999999 99999999999999999999999999988899999877  8999999999999999999


Q ss_pred             EEEEecCCCCCCCCCCCC-CCCCCCcEEEEEEEecee
Q 013755          119 VFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI  154 (437)
Q Consensus       119 ~~~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~  154 (437)
                      ++  +|||++|||..+.+ .|||+++|+|+|+|+++.
T Consensus       168 ~~--~iP~~laYG~~g~~~~Ipp~s~l~feveL~~i~  202 (204)
T d1fd9a_         168 EI--YVPSGLAYGPRSVGGPIGPNETLIFKIHLISVK  202 (204)
T ss_dssp             EE--EECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEE
T ss_pred             EE--EEChHHCcCCCCCCCCcCcCCcEEEEEEEEEEE
Confidence            99  99999999999976 799999999999999875

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.6e-24  Score=171.13  Aligned_cols=105  Identities=41%  Similarity=0.676  Sum_probs=97.9

Q ss_pred             CeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccC-------CCCCeEEEeCCccccccHHHHhccccCCceEE
Q 013755           47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRD-------RYDPLTFKLGTGQVATGLDNGIITMKKRECAV  119 (437)
Q Consensus        47 g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~-------~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~  119 (437)
                      ++.|+|+++|+|...|+.||.|+|||++++.||++|++|+.       .+.|+.|.+|.+++++||+++|.+|++|++++
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            57899999999967799999999999999999999999965       34699999999999999999999999999999


Q ss_pred             EEEecCCCCCCCCCCCC--CCCCCCcEEEEEEEece
Q 013755          120 FTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSW  153 (437)
Q Consensus       120 ~~~~ip~~~ayg~~~~~--~i~~~~~~~f~v~l~~~  153 (437)
                      |  +|||++|||+.+.+  .||++++|+|+|+|+++
T Consensus        82 ~--~ip~~~ayG~~g~~~~~Ipp~s~L~feieLl~v  115 (116)
T d1pbka_          82 L--EIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI  115 (116)
T ss_dssp             E--EECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             E--EECHHHhCCccCCCCCCcCcCCeEEEEEEEEEE
Confidence            9  99999999999875  79999999999999876

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=1.6e-24  Score=176.37  Aligned_cols=111  Identities=34%  Similarity=0.574  Sum_probs=102.9

Q ss_pred             ceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhcc------cc
Q 013755           40 ERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIIT------MK  113 (437)
Q Consensus        40 ~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~------m~  113 (437)
                      +..+++|||+|+++++|+| ++|+.||.|+|||++++.||++|++|+..+.|+.|.+|.+.++++|+++|.+      |+
T Consensus         2 ~~~~~psGl~y~~~~~G~G-~~p~~gd~V~v~y~g~l~~G~~fdss~~~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~M~   80 (125)
T d1u79a_           2 EFSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPML   80 (125)
T ss_dssp             CCEECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCB
T ss_pred             CcEECCCCCEEEEEEeccC-CCCCCCCEEEEEEEeeecCCcEEecccccCcceeEecCccccccchhhhccchhhccccc
Confidence            3568999999999999999 8999999999999999999999999998889999999999999999998855      99


Q ss_pred             CCceEEEEEecCCCCCCCCCCCC------CCCCCCcEEEEEEEece
Q 013755          114 KRECAVFTFTLPSELRFGVEGRD------SLPPNSVVQFEVELVSW  153 (437)
Q Consensus       114 ~G~~~~~~~~ip~~~ayg~~~~~------~i~~~~~~~f~v~l~~~  153 (437)
                      +|++++|  +|||++|||..+.+      .||++++|+|+|+|+.+
T Consensus        81 ~G~k~~v--~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          81 TGGKRTL--RIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             TTCEEEE--EECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCCEEEE--EECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            9999999  99999999998742      69999999999999875

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.89  E-value=1.1e-23  Score=178.15  Aligned_cols=114  Identities=30%  Similarity=0.501  Sum_probs=102.8

Q ss_pred             CceeecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceE
Q 013755           39 EERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA  118 (437)
Q Consensus        39 ~~~~~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~  118 (437)
                      ..+.++++||+|+++++|.|...|..||.|+|||++++.||++|++++..+.|  |.++.+.+|+||+++|.+|++|+++
T Consensus        27 ~~~~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~~~~~~p--~~~~~~~~i~G~~e~l~~M~~Ge~~  104 (160)
T d1jvwa_          27 PDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKP--TTFRPNEVIKGWTEALQLMREGDRW  104 (160)
T ss_dssp             TTEEECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSC--EEECGGGSCHHHHHHHTTCCTTCEE
T ss_pred             CCCEECCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeeeccccCc--cccCccccchhHHHHhcCcccccee
Confidence            34567899999999999999567999999999999999999999999886666  5556779999999999999999999


Q ss_pred             EEEEecCCCCCCCCCCCC-CCCCCCcEEEEEEEeceeee
Q 013755          119 VFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWITV  156 (437)
Q Consensus       119 ~~~~~ip~~~ayg~~~~~-~i~~~~~~~f~v~l~~~~~~  156 (437)
                      +|  +|||++|||..+.+ .||++++|+|+|+|+++...
T Consensus       105 ~v--~iPp~laYG~~g~~~~IPp~s~LifeIeLl~i~~~  141 (160)
T d1jvwa_         105 RL--FIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDG  141 (160)
T ss_dssp             EE--EECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGG
T ss_pred             EE--EeCHHHCcCCCCCCCCcCcCCcEEEEEEEEEEecC
Confidence            99  99999999999866 89999999999999998643

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.6e-23  Score=164.07  Aligned_cols=115  Identities=35%  Similarity=0.516  Sum_probs=102.2

Q ss_pred             eccC--CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCC
Q 013755          157 VDLS--KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGE  234 (437)
Q Consensus       157 ~d~~--~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~  234 (437)
                      .|++  .|+++.++|+++|.|...|..++.|+++|                           ++++.||++||++ ++++
T Consensus         3 ~d~t~~~d~gv~~~i~~~G~G~~~P~~gd~V~v~y---------------------------~~~l~dG~~fdss-~~~~   54 (120)
T d1q1ca1           3 VDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHY---------------------------TGWLLDGTKFDSS-LDRK   54 (120)
T ss_dssp             EECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEE---------------------------EEEETTSCEEEES-TTSS
T ss_pred             eeccCCCCCCEEEEEEEcccCCcCCCCCCEEEEEE---------------------------EEEEcCCCEEEec-cccc
Confidence            3444  68999999999999988899999988755                           4555677788887 7888


Q ss_pred             CCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeec
Q 013755          235 QPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (437)
Q Consensus       235 ~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~  302 (437)
                      .|+.|.+|.+.+++||+.+|.+|++||++.|.|||+++||+.+.+.   .|||+++|+|+|+|+++..
T Consensus        55 ~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~~laYG~~g~~~---~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          55 DKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPP---KIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             SCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEEC
T ss_pred             cceeeecCCCceeeeeeeeeccccCCcEEEEEECHHHhCCCcCCCC---CCCcCCcEEEEEEEEEEeC
Confidence            9999999999999999999999999999999999999999998765   6999999999999999863

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.89  E-value=1.2e-22  Score=174.60  Aligned_cols=133  Identities=37%  Similarity=0.614  Sum_probs=127.7

Q ss_pred             cCCCCCChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCH
Q 013755          304 KVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY  383 (437)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~  383 (437)
                      +++|+|+..++++.+..+++.|+.+|+.|+|.+|+..|++|+.+.+.......+.......+...+|+|+|.||+++++|
T Consensus         1 ~e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1           1 KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhc
Confidence            47899999999999999999999999999999999999999999998888888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          384 QGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       384 ~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      .+|+.+|+++|.++|++.++++++|.+|..+|+|++|+.+|+++++++|+|++
T Consensus        81 ~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~  133 (168)
T d1kt1a1          81 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA  133 (168)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred             ccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999999999999999999999999999999999864

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=7.6e-23  Score=164.00  Aligned_cols=111  Identities=36%  Similarity=0.548  Sum_probs=99.3

Q ss_pred             CCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEE
Q 013755          160 SKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEF  239 (437)
Q Consensus       160 ~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f  239 (437)
                      ..|+++.++++++|+|+..|..++.|+++|..                           ++.||++|+++ +.++.|+.|
T Consensus         7 ~~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~---------------------------~l~dG~v~dss-~~~~~p~~f   58 (118)
T d1r9ha_           7 KKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVG---------------------------TLENGTKFDSS-RDRGDQFSF   58 (118)
T ss_dssp             TCCSSEEEEEEECCBSSCCCCTTCEEEEEEEE---------------------------EETTSCEEEEH-HHHTSCEEE
T ss_pred             cCCCCEEEEEEECcCCCCCCCCCCEEEEEEEE---------------------------EEcCCCEEEEc-cccceeeee
Confidence            37899999999999999899999998886544                           45566777776 677889999


Q ss_pred             EcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755          240 ITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (437)
Q Consensus       240 ~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~  301 (437)
                      .+|.+.+++||+++|.+|++||++.|.+||++|||+.+.+.   .|||+++|+|+|+|++|.
T Consensus        59 ~~g~~~vi~G~~~~l~~M~~Ge~~~~~ipp~laYG~~g~~~---~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          59 NLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPP---KIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             ETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEE
T ss_pred             eccCcceeeeeeeeeeeecCCceEEEEECHHHhCCcCCCCC---ccCcCCcEEEEEEEEEEe
Confidence            99999999999999999999999999999999999999864   699999999999999985

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.2e-22  Score=172.24  Aligned_cols=131  Identities=37%  Similarity=0.641  Sum_probs=126.5

Q ss_pred             CCCCChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHH
Q 013755          306 PWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQG  385 (437)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~  385 (437)
                      .|+|+.+++++.+..+++.|+.+|+.|+|++|+..|++||.+++........+......+...+++|+|.||+++++|++
T Consensus         1 ~~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~   80 (170)
T d1p5qa1           1 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA   80 (170)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhccc
Confidence            49999999999999999999999999999999999999999999888888888888999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          386 AIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       386 Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      |+.+|+++|+++|+++.+++++|.||..+|+|++|+.+|++|++++|+|++
T Consensus        81 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~  131 (170)
T d1p5qa1          81 AIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA  131 (170)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred             ccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999999999999999999999999864

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.88  E-value=3.1e-22  Score=169.28  Aligned_cols=133  Identities=36%  Similarity=0.432  Sum_probs=122.5

Q ss_pred             cCCCCCChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCCh-HHHHHHHhhhHHHhhhHHHHHHhccC
Q 013755          304 KVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD-DEQKLVKSLRVSCWLNSAACCLKLKD  382 (437)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~~~~  382 (437)
                      ++.|+|+.++++..+..+++.|+.+|+.|+|.+|+..|++||.+.+......+ ........+...+++|+|.||+++++
T Consensus         3 ~~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~   82 (153)
T d2fbna1           3 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD   82 (153)
T ss_dssp             CSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc
Confidence            57899999999999999999999999999999999999999999877655443 34456677788899999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          383 YQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       383 ~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      |++|+.+|++||+++|+++++|+++|.+|..+|+|++|+.+|+++++++|+|++
T Consensus        83 ~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  136 (153)
T d2fbna1          83 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD  136 (153)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             cchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999999999999999999999999999864

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.86  E-value=1.5e-22  Score=160.72  Aligned_cols=110  Identities=35%  Similarity=0.538  Sum_probs=81.2

Q ss_pred             CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (437)
Q Consensus       161 ~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~  240 (437)
                      .|+++.++++++|.|...|..++.|+++|+.+                           +.||++||++ ++.+.|+.|.
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~---------------------------l~dG~~~dss-~~~~~p~~f~   53 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGK---------------------------LANGKKFDSS-HDRNEPFVFS   53 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCC---------------------------SCC-------------CEEEE
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEE---------------------------ECCCCEEEEE-Eecceeeeee
Confidence            47899999999999988899999998866554                           4456667766 7778999999


Q ss_pred             cCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (437)
Q Consensus       241 lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~  301 (437)
                      +|.+.+++||+.+|.+|++||++.|+|||++|||+.+...   .|||+++|+|+|+|++++
T Consensus        54 lg~~~~i~G~~~~l~~M~~Ge~~~~~ip~~layG~~g~~~---~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          54 IGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGATGSLP---KIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             TTSSSSCHHHHHSTTTCCTTCCEEEEC----CCCTTTCTT---TSCTTCCCEEEEEEEEEE
T ss_pred             cCCCcEEeeeeeeehhccCCcEEEEEECHHHhCCCCCCCC---cCCcCCeEEEEEEEEEEC
Confidence            9999999999999999999999999999999999998764   799999999999999874

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.2e-21  Score=154.47  Aligned_cols=107  Identities=27%  Similarity=0.506  Sum_probs=94.7

Q ss_pred             cceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEEcCC
Q 013755          164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE  243 (437)
Q Consensus       164 ~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~  243 (437)
                      ++.++++++|+|...|..++.|+++|..                           ++.||++||++ ++++.|+.|.+|.
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g---------------------------~l~dG~~~d~s-~~~~~p~~~~~g~   52 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTG---------------------------MLEDGKKFDSS-RDRNKPFKFMLGK   52 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEE---------------------------EETTSCEEEEH-HHHTSCEEEETTS
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEE---------------------------EecCCeEEEee-eccceeeeEeeCc
Confidence            4678999999998889999998886544                           45566677776 6778999999999


Q ss_pred             CCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755          244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (437)
Q Consensus       244 ~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~  301 (437)
                      +.+++||+++|.+|++||++.|+|||++|||+.+.+.   .|||+++|+|+|+|++++
T Consensus        53 ~~~i~G~~~~l~~M~~Ge~~~~~ip~~laYG~~g~~~---~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          53 QEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPG---IIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             CCSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEC
T ss_pred             chhheeehhhhcCccCCCEEEEEECHHHhCCCCCCCC---CCCcCCeEEEEEEEEEEC
Confidence            9999999999999999999999999999999998765   699999999999999874

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=2.9e-21  Score=153.83  Aligned_cols=109  Identities=26%  Similarity=0.383  Sum_probs=97.9

Q ss_pred             CccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEEc
Q 013755          162 DGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFIT  241 (437)
Q Consensus       162 dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~l  241 (437)
                      |+++.++++++|+|...|+.+|.|+++|..                           ++.||++||++ +....|+.|.+
T Consensus         5 d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~---------------------------~~~dG~~~ds~-~~~~~~~~~~~   56 (113)
T d1yata_           5 EGNVKIDRISPGDGATFPKTGDLVTIHYTG---------------------------TLENGQKFDSS-VDRGSPFQCNI   56 (113)
T ss_dssp             GGGCEEEEEECCCSSCCCCTTCEEEEEEEE---------------------------EETTSCEEEES-TTTTCCEEEET
T ss_pred             cCCcEEEEEECccCCcCCCCCCEEEEEEEE---------------------------EEecCcEEecc-ccCCceEeeee
Confidence            688999999999999889999999886654                           44566777777 78889999999


Q ss_pred             CCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755          242 DEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (437)
Q Consensus       242 g~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~  301 (437)
                      +.+.+++||+++|..|++||++.|.+||++|||+.+.+.   .||++++|+|+|+|+++.
T Consensus        57 ~~~~~i~G~~~~l~~M~~G~~~~~~iP~~laYG~~g~~~---~IP~~s~Lif~ieLl~I~  113 (113)
T d1yata_          57 GVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPG---LIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             TSSSSCHHHHHHGGGCCTTCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEC
T ss_pred             ccCceeeehhhhcccccCCCEEEEEechHHeecCcCCCC---ccCcCCeEEEEEEEEEeC
Confidence            999999999999999999999999999999999999875   699999999999999863

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.86  E-value=1.2e-21  Score=156.92  Aligned_cols=104  Identities=29%  Similarity=0.593  Sum_probs=94.1

Q ss_pred             ecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCc---cccccHHHHhccccCCceEE
Q 013755           43 LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTG---QVATGLDNGIITMKKRECAV  119 (437)
Q Consensus        43 ~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~---~~~~g~~~~l~~m~~G~~~~  119 (437)
                      +.++||.|+++++|+|+.+|+.||.|+|||++++ +|++|+++     +..|.++.+   .+|+||+++|.+|++|++++
T Consensus         5 ~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~~-----~~~~~~~~~~~~~vi~G~~~~l~~M~~Ge~~~   78 (115)
T d1kt1a3           5 LEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQREEQCI   78 (115)
T ss_dssp             TSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEE
T ss_pred             ccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCcccccc-----ccCceeeeccccccCchhHhhhccchhhceeE
Confidence            5789999999999999778999999999999997 88888764     467777653   58999999999999999999


Q ss_pred             EEEecCCCCCCCCCCCC--CCCCCCcEEEEEEEecee
Q 013755          120 FTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSWI  154 (437)
Q Consensus       120 ~~~~ip~~~ayg~~~~~--~i~~~~~~~f~v~l~~~~  154 (437)
                      |  +|||++|||..+.+  .||++++++|+|+|+++.
T Consensus        79 v--~ip~~~ayG~~g~~~~~Ipp~a~l~f~ieLl~~~  113 (115)
T d1kt1a3          79 L--HLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFE  113 (115)
T ss_dssp             E--EECGGGSSCTTCBTTTTBCTTCCEEEEEEEEEEE
T ss_pred             E--EeCHHHCcCCCCCCCCCcCcCCeEEEEEEEEEEE
Confidence            9  99999999999876  699999999999999875

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.3e-21  Score=152.56  Aligned_cols=115  Identities=34%  Similarity=0.462  Sum_probs=94.7

Q ss_pred             cceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEEcCC
Q 013755          164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE  243 (437)
Q Consensus       164 ~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~lg~  243 (437)
                      .+.|+|+++|+|...|..+|.|+|+|+.++.||+++.++-                  +..  ... .....|+.|.+|.
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~------------------~~~--~~~-~~~~~p~~f~lg~   60 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNI------------------QTS--AKK-KKNAKPLSFKVGV   60 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECC------------------CSS--CCT-TTSSCCEEEETTT
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeeccc------------------ccc--ccc-ccCCCceeeeecc
Confidence            4689999999998899999999998887777766554330                  000  001 2356799999999


Q ss_pred             CCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755          244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (437)
Q Consensus       244 ~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~  301 (437)
                      +.+++||+++|.+|++||++.|+|||+++||+.+...  ..||++++|+|+|+|++++
T Consensus        61 ~~~i~Gl~~~v~~M~~Ge~~~~~ip~~~ayG~~g~~~--~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          61 GKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD--AKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             TSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEEC
T ss_pred             cccccchheechhhcCCcEEEEEECHHHhCCccCCCC--CCcCcCCeEEEEEEEEEEC
Confidence            9999999999999999999999999999999988753  3699999999999999874

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.83  E-value=3.1e-20  Score=148.62  Aligned_cols=111  Identities=30%  Similarity=0.544  Sum_probs=94.5

Q ss_pred             eccCCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCC
Q 013755          157 VDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQP  236 (437)
Q Consensus       157 ~d~~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p  236 (437)
                      ++++.|+++.|+|+++|+|+..|..++.|+++|+.++                            +|++|+++      +
T Consensus         2 e~~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~----------------------------~g~~~~~~------~   47 (115)
T d1kt1a3           2 EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC----------------------------GGRVFDCR------D   47 (115)
T ss_dssp             EETTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE----------------------------TTEEEEEE------E
T ss_pred             CccccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe----------------------------CCcccccc------c
Confidence            5788999999999999999989999999999887764                            33444443      4


Q ss_pred             eEEEcCC---CCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeecc
Q 013755          237 LEFITDE---EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKE  303 (437)
Q Consensus       237 ~~f~lg~---~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~  303 (437)
                      ..|.++.   ..+|+||+.+|.+|++||++.|+|||+++||+.+.+.  ..|||+++|+|+|+|++++++
T Consensus        48 ~~~~~~~~~~~~vi~G~~~~l~~M~~Ge~~~v~ip~~~ayG~~g~~~--~~Ipp~a~l~f~ieLl~~~ka  115 (115)
T d1kt1a3          48 VAFTVGEGEDHDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPK--FGIEPNAELIYEVTLKSFEKA  115 (115)
T ss_dssp             EEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGSSCTTCBTT--TTBCTTCCEEEEEEEEEEECC
T ss_pred             cCceeeeccccccCchhHhhhccchhhceeEEEeCHHHCcCCCCCCC--CCcCcCCeEEEEEEEEEEEeC
Confidence            5666664   3689999999999999999999999999999998764  259999999999999999864

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.4e-20  Score=149.66  Aligned_cols=106  Identities=28%  Similarity=0.551  Sum_probs=91.8

Q ss_pred             ecCCCeEEEEEEccCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCc---cccccHHHHhccccCCceEE
Q 013755           43 LGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTG---QVATGLDNGIITMKKRECAV  119 (437)
Q Consensus        43 ~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~---~~~~g~~~~l~~m~~G~~~~  119 (437)
                      ..++||+|+++++|.|+.+|..||.|+|||++++.+| .|+++     +..|..+.+   ++++||+++|.+|++|++++
T Consensus         5 ~~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~-~~~~~-----~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~~   78 (117)
T d1q1ca2           5 EEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDK-LFDQR-----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSI   78 (117)
T ss_dssp             TCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTE-EEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEE
T ss_pred             cCCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCC-cEeec-----cccceeeecceeeeCcHHHHhhhcchhhCeEE
Confidence            3679999999999999778999999999999999666 45543     355666543   68999999999999999999


Q ss_pred             EEEecCCCCCCCCCCCC--CCCCCCcEEEEEEEeceeee
Q 013755          120 FTFTLPSELRFGVEGRD--SLPPNSVVQFEVELVSWITV  156 (437)
Q Consensus       120 ~~~~ip~~~ayg~~~~~--~i~~~~~~~f~v~l~~~~~~  156 (437)
                      +  +|||++|||..+.+  .||++++++|+|+|+++...
T Consensus        79 i--~ip~~~ayG~~g~~~~~Ipp~s~l~f~veL~~~~~~  115 (117)
T d1q1ca2          79 V--YLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKA  115 (117)
T ss_dssp             E--EECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECC
T ss_pred             E--EECHHHhCcccCCCCCccCcCCeEEEEEEEEEEEeC
Confidence            9  99999999999876  79999999999999998643

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.79  E-value=3.1e-19  Score=150.43  Aligned_cols=114  Identities=23%  Similarity=0.357  Sum_probs=94.8

Q ss_pred             CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (437)
Q Consensus       161 ~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~  240 (437)
                      -+.++.++++++|.|...|..+|.|+|+|..                           ++.||++|+++ +....|  |.
T Consensus        32 ~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g---------------------------~l~dG~~fds~-~~~~~p--~~   81 (160)
T d1jvwa_          32 LPSGLVFQRIARGSGKRAPAIDDKCEVHYTG---------------------------RLRDGTVFDSS-RERGKP--TT   81 (160)
T ss_dssp             CTTSCEEEEEECCCCSBCCCTTCCEEEEEEE---------------------------ECTTSCEEEEH-HHHTSC--EE
T ss_pred             CCCCCEEEEEECcccccCCCCCcceEEEEEE---------------------------EEccCCeeeee-ccccCc--cc
Confidence            4667999999999998889999998886655                           44566667766 555556  45


Q ss_pred             cCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeecccCCC
Q 013755          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPW  307 (437)
Q Consensus       241 lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~~~~~  307 (437)
                      ++.+.+++||+.+|.+|++||++.|+|||+++||..+...   .||++++|+|+|+|+++.......
T Consensus        82 ~~~~~~i~G~~e~l~~M~~Ge~~~v~iPp~laYG~~g~~~---~IPp~s~LifeIeLl~i~~~~~~~  145 (160)
T d1jvwa_          82 FRPNEVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGG---MIPPYSPLEFDVELISIKDGGKGR  145 (160)
T ss_dssp             ECGGGSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCSSS---SSCTTCCEEEEEEEEEEGGGCCSC
T ss_pred             cCccccchhHHHHhcCccccceeEEEeCHHHCcCCCCCCC---CcCcCCcEEEEEEEEEEecCCCCC
Confidence            5668999999999999999999999999999999988764   699999999999999997655443

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=9.9e-19  Score=140.08  Aligned_cols=108  Identities=33%  Similarity=0.509  Sum_probs=90.8

Q ss_pred             CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (437)
Q Consensus       161 ~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~  240 (437)
                      .|+++.|+|+++|.|+..|..++.|+++|+.++.++....                            +      +..|.
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~~~~----------------------------~------~~~~~   51 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQ----------------------------R------ELRFE   51 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEEEEE----------------------------E------EEEEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCcEee----------------------------c------cccce
Confidence            7899999999999999999999999999988877654221                            1      23334


Q ss_pred             cCC---CCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeeccc
Q 013755          241 TDE---EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEK  304 (437)
Q Consensus       241 lg~---~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~~  304 (437)
                      .+.   ..+++||+.+|.+|++||++.|+|||++|||..+.+.  ..|||+++|+|+|+|+++.+.+
T Consensus        52 ~~~~~~~~~i~Gl~~~l~~M~~Ge~~~i~ip~~~ayG~~g~~~--~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          52 IGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             TTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEEECCC
T ss_pred             eeecceeeeCcHHHHhhhcchhhCeEEEEECHHHhCcccCCCC--CccCcCCeEEEEEEEEEEEeCC
Confidence            433   3689999999999999999999999999999988753  3699999999999999998765

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.78  E-value=5e-19  Score=155.72  Aligned_cols=108  Identities=25%  Similarity=0.398  Sum_probs=94.6

Q ss_pred             CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (437)
Q Consensus       161 ~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~  240 (437)
                      -+.++..+++++|+|. .|..++.|+|                           ||+|++.||++||++ +.++.|++|.
T Consensus        96 ~~sGl~y~v~~~G~G~-~p~~~d~v~v---------------------------~y~g~l~dg~~f~~s-~~~~~p~~~~  146 (204)
T d1fd9a_          96 LPSGLQYKVINSGNGV-KPGKSDTVTV---------------------------EYTGRLIDGTVFDST-EKTGKPATFQ  146 (204)
T ss_dssp             CTTSCEEEEEECCCSC-CCCTTCEEEE---------------------------EEEEEETTSCEEEEH-HHHCSCEEEE
T ss_pred             ecCccEEEEeecCCCc-ccCCCCEEEE---------------------------EEEEEECCCCEeccc-ccCCCCceec
Confidence            3567899999999994 6888888887                           556666777888887 7788999998


Q ss_pred             cCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeec
Q 013755          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIK  302 (437)
Q Consensus       241 lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~  302 (437)
                      +|  .+|+||+++|..|++|+++.|+|||+++||+.|.+.   .|||+++|+|+|+|+++.+
T Consensus       147 ~~--~~i~G~~e~l~~m~~G~~~~~~iP~~laYG~~g~~~---~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         147 VS--QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGG---PIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             GG--GSCHHHHHHHTTCCTTCEEEEEECGGGTTTTCCCSS---SCCTTCCEEEEEEEEEEEC
T ss_pred             CC--ccchhHHHHhcCCCCCCEEEEEEChHHCcCCCCCCC---CcCcCCcEEEEEEEEEEEc
Confidence            85  799999999999999999999999999999999865   6999999999999999975

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=8.1e-19  Score=140.87  Aligned_cols=105  Identities=23%  Similarity=0.215  Sum_probs=100.0

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      .+..+++.|+.+++.|+|++|+..|+++|...|.+.               .+|+++|.||.++|+|++|+.+|++++++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---------------VLYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch---------------hhhhcccccccccccccccchhhhhHHHh
Confidence            467789999999999999999999999999988764               77999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +|+++.+|+++|.++..+|++++|+..|+++++++|+|++
T Consensus        67 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~  106 (117)
T d1elwa_          67 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQ  106 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999999999999999864

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=9.1e-19  Score=154.64  Aligned_cols=106  Identities=31%  Similarity=0.538  Sum_probs=94.1

Q ss_pred             CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (437)
Q Consensus       161 ~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~  240 (437)
                      .+.++..+++++|+| ..|..++.|+|                           ||+|++.||++||++ ++++.|+.|.
T Consensus       105 ~~sGl~y~v~~~G~G-~~p~~gd~v~v---------------------------~y~g~l~dG~~fd~s-~~~~~p~~~~  155 (210)
T d1q6ha_         105 SSTGLVYQVVEAGKG-EAPKDSDTVVV---------------------------NYKGTLIDGKEFDNS-YTRGEPLSFR  155 (210)
T ss_dssp             CTTSCEEEEEECCSS-CCCCTTCEEEE---------------------------EEEEEETTSCEEEEG-GGGTSCEEEE
T ss_pred             ccCceEEEEeeCCCC-CCCCCCceEEE---------------------------EEEEEEcCCCEEeec-ccCCCcceec
Confidence            467889999999998 57888888887                           556667788888888 7889999999


Q ss_pred             cCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeee
Q 013755          241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI  301 (437)
Q Consensus       241 lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~  301 (437)
                      +|  .+|+||+++|..|++|+++.|+|||+++||+.+.+    .|||+++|+|+|+|+++.
T Consensus       156 ~~--~vi~g~~e~l~~m~~G~k~~~~iP~~laYG~~g~~----~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         156 LD--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVP----GIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             GG--GSCHHHHHHGGGSCTTCEEEEEECGGGTTTTTCBT----TBCTTCCEEEEEEEEEEC
T ss_pred             cC--ccchhHHHHHhhccCCCEEEEEECHHHCcCCCCCC----CCCcCCcEEEEEEEEEEC
Confidence            95  69999999999999999999999999999999976    499999999999999874

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=2.3e-18  Score=147.50  Aligned_cols=127  Identities=35%  Similarity=0.514  Sum_probs=111.3

Q ss_pred             ChHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC-CChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHH
Q 013755          310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-FVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIE  388 (437)
Q Consensus       310 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~  388 (437)
                      ..+..+..+..++..|+.+++.|+|.+|+..|++||.+.+.... ....+..........+++|+|.||.++++|++|+.
T Consensus        19 ~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~   98 (169)
T d1ihga1          19 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD   98 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhh
Confidence            45677788889999999999999999999999999998654321 12233344566778899999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          389 LCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       389 ~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +|++||+++|+++++|+++|.+|..+|+|++|+.+|++|++++|+|++
T Consensus        99 ~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~  146 (169)
T d1ihga1          99 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA  146 (169)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999999999999999999999864

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.5e-18  Score=144.09  Aligned_cols=111  Identities=23%  Similarity=0.365  Sum_probs=105.0

Q ss_pred             hHHHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHH
Q 013755          311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC  390 (437)
Q Consensus       311 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~  390 (437)
                      .+..++.+..++.+|+.+|+.|+|++|+..|++|+++.|.+               ..+|+++|.||+.+|++++|+.+|
T Consensus         3 ~~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~~~~   67 (159)
T d1a17a_           3 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDA   67 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh---------------hhhhhhhHHHHHhccccchHHHHH
Confidence            35667899999999999999999999999999999998875               477999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          391 SKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       391 ~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +++|+++|+++.+|+++|.++..+|+|++|+.+|++++.++|+|++
T Consensus        68 ~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~  113 (159)
T d1a17a_          68 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD  113 (159)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            9999999999999999999999999999999999999999999853

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=2.3e-18  Score=150.91  Aligned_cols=103  Identities=28%  Similarity=0.381  Sum_probs=98.3

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ++.+++.|+.+|+.|+|++|+..|++||.+.|.+               ..+|+|+|.||.++|+|++|+.+|++|++++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~---------------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALCYLKMQQPEQALADCRRALELD   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            5679999999999999999999999999998875               3789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |+++.+|+++|.+|..+|+|++|+.+|++|++++|++.
T Consensus        69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999999999999999999998765

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.73  E-value=3.2e-19  Score=148.71  Aligned_cols=126  Identities=23%  Similarity=0.436  Sum_probs=91.9

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEecccC-------------CCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCC
Q 013755           62 PEFGDEVTIHYVGTLLDGTKFDSTRD-------------RYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSEL  128 (437)
Q Consensus        62 ~~~gd~V~v~y~~~~~~G~~~~st~~-------------~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~  128 (437)
                      +++||.|+|||++++.||++|+||++             .+.|+.|.+|.++++|||+++|.+|++|++++|  .|||+.
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v--~i~p~~   79 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTV--KIPAEK   79 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEE--EECTTT
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEE--EeCHHH
Confidence            68999999999999999999999964             457999999999999999999999999999999  999999


Q ss_pred             CCCCCCCCCCCCCCcEEE---EEEEeceeeeeccCCCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeec
Q 013755          129 RFGVEGRDSLPPNSVVQF---EVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK  201 (437)
Q Consensus       129 ayg~~~~~~i~~~~~~~f---~v~l~~~~~~~d~~~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~  201 (437)
                      |||.++...+..-+.-.|   ++++..   ......++ ...+|++-        ..+.|++|+||+++|.++.|+
T Consensus        80 ayG~~d~~~v~~vp~~~f~~~~~~~~~---~~~~~~~~-~~~~V~~v--------~~~~v~vD~NHPlAG~~L~f~  143 (151)
T d1ix5a_          80 AYGNRNEMLIQKIPRDAFKEADFEPEE---GMVILAEG-IPATITEV--------TDNEVTLDFNHELAGKDLVFT  143 (151)
T ss_dssp             SSCSCCSTTBCCEETHHHHTSTTCCCT---TEEEESSS-CEEEEEEE--------ETTEEEEECCCSSTTCCEEEE
T ss_pred             hccccccCccceehhhhcccccccccc---ceEEecCC-CceEEEEE--------cCCEEEEECCCcCCCCeEEEE
Confidence            999988663221110000   000100   00011111 22233322        257899999999999998875

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.73  E-value=8.8e-18  Score=135.99  Aligned_cols=111  Identities=23%  Similarity=0.319  Sum_probs=92.9

Q ss_pred             CCccceEEEEeccccCCCCCCCCeEEEEEEEEcCCCeeeeccCCCCeeEEEEEEEEEEEecCccEEeecCCCCCCCeEEE
Q 013755          161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI  240 (437)
Q Consensus       161 ~dg~v~k~i~~~G~g~~~p~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~fd~~~~~~~~p~~f~  240 (437)
                      .+.++..+++++|.| ..|..+|.|+++|..                           ++.||++||++ +..+.|+.|.
T Consensus         6 ~psGl~y~~~~~G~G-~~p~~gd~V~v~y~g---------------------------~l~~G~~fdss-~~~~~p~~~~   56 (125)
T d1u79a_           6 SPSGLAFCDKVVGYG-PEAVKGQLIKAHYVG---------------------------KLENGKVFDSS-YNRGKPLTFR   56 (125)
T ss_dssp             CTTSCEEEEEECCSS-CBCCTTCEEEEEEEE---------------------------ECTTSCEEEEH-HHHTSCEEEE
T ss_pred             CCCCCEEEEEEeccC-CCCCCCCEEEEEEEe---------------------------eecCCcEEecc-cccCcceeEe
Confidence            456789999999999 479999998886554                           45567777777 6778999999


Q ss_pred             cCCCCcchHHHHHh------cccccCcEEEEEEcCCCCCCcccccc--ccccCCCCceEEEEEEEeee
Q 013755          241 TDEEQVIAGLDRVA------ATMKKEEWAIVTINHEYGFGNVEAKR--DLATIPSCAKLYYEVEMMDF  300 (437)
Q Consensus       241 lg~~~~~~gl~~~l------~~m~~GE~~~i~i~~~~~yg~~~~~~--~~~~ip~~~~l~~~vel~~~  300 (437)
                      +|.+.+++||+.++      +.|++||++.|+|||+++||+.+...  ....|||+++|+|+|+|+.+
T Consensus        57 ~g~~~~i~g~~~~i~g~~~l~~M~~G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          57 IGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             TTSSSSCHHHHHHHHCBTTBCCCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             cCccccccchhhhccchhhcccccCCCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            99999999999887      45999999999999999999987532  22359999999999999875

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=8.9e-16  Score=124.82  Aligned_cols=103  Identities=26%  Similarity=0.333  Sum_probs=94.7

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      +.+..+++.|+.+|..|+|++|+.+|+++|.+.|.+               ..+++|+|.||.++|+|++|+.+|+++|+
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---------------MTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------HHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            467889999999999999999999999999998865               37899999999999999999999999999


Q ss_pred             hCCCCH-------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 013755          396 CDCHNV-------KALYRRAQAYMEIADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       396 ~~p~~~-------~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  433 (437)
                      ++|++.       .+|+++|.++..+++|++|+.+|++++.++|+
T Consensus        67 l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             hCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            998774       57888999999999999999999999998875

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=1.9e-14  Score=130.47  Aligned_cols=105  Identities=20%  Similarity=0.112  Sum_probs=99.9

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..++.+|..+++.|+|++|+..|++||.+.|++.               .+|+++|.||.++|++++|+.+|+++++
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~   99 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP---------------EVFNYLGIYLTQAGNFDAAYEAFDSVLE   99 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH---------------HHHhhhchHHHHHHHHHHhhhhhhHHHH
Confidence            4688899999999999999999999999999988753               7799999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++|+++.+++++|.+|..+|++++|+..|+++++++|++.
T Consensus       100 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  139 (259)
T d1xnfa_         100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  139 (259)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccH
Confidence            9999999999999999999999999999999999999864

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.6e-14  Score=125.95  Aligned_cols=102  Identities=20%  Similarity=0.176  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..++++|..++..|+|+.|++.|.++   .+.+               ..+++|+|.||+.+|+|++|+.+|++||+
T Consensus         3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~---------------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~   64 (192)
T d1hh8a_           3 VEAISLWNEGVLAADKKDWKGALDAFSAV---QDPH---------------SRICFNIGCMYTILKNMTEAEKAFTRSIN   64 (192)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCC---------------HHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            45668889999999999999999999863   2211               35789999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++|+++.+|+++|.+|..+|+|++|+.+|++|+...|.|.
T Consensus        65 ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~  104 (192)
T d1hh8a_          65 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  104 (192)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCc
Confidence            9999999999999999999999999999999999888764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.54  E-value=2.7e-14  Score=112.99  Aligned_cols=93  Identities=13%  Similarity=0.036  Sum_probs=88.6

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  400 (437)
                      ....|..+++.|++.+|+..|++++...|..               ..+|+++|.++.+++++++|+.+++++++++|++
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   83 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPER---------------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   83 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccccccc---------------chhhhhhhhhhhhhhhHHHhhccccccccccccc
Confidence            4678999999999999999999999998875               3789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 013755          401 VKALYRRAQAYMEIADLILAELDIKKAI  428 (437)
Q Consensus       401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al  428 (437)
                      ..+++.+|.+|..+|++++|++.|++.|
T Consensus        84 ~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          84 IAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            9999999999999999999999999986

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.52  E-value=1.4e-14  Score=121.71  Aligned_cols=119  Identities=17%  Similarity=0.148  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHH
Q 013755          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV  393 (437)
Q Consensus       314 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  393 (437)
                      .+..+..+...|+.+|..|+|++|+..|++||.+.+..+.....   ........+|+|+|.||.++|+|++|+.+|+++
T Consensus         5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~---~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~a   81 (156)
T d2hr2a1           5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAF---DHAGFDAFCHAGLAEALAGLRSFDEALHSADKA   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCC---CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhc---ccchhHHHHHHHHHHHHHHcCccchhhHhhhhh
Confidence            34566677788999999999999999999999999876532110   111234578999999999999999999999999


Q ss_pred             HHhCCC-----------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          394 LDCDCH-----------NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       394 l~~~p~-----------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      |.+.|.           ...+|+++|.+|..+|++++|+.+|++|+++.|+..
T Consensus        82 l~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          82 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             hhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            987542           246899999999999999999999999999987654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.1e-15  Score=118.51  Aligned_cols=100  Identities=17%  Similarity=0.167  Sum_probs=89.6

Q ss_pred             HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh---ccCHHHHHHHHHHHHHhCC
Q 013755          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK---LKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~---~~~~~~Ai~~~~~al~~~p  398 (437)
                      -+.++.++..++|++|.+.|+++|.+.|.+.               .+++|+|.|+++   .+++++|+..+++++..+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~---------------~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~   67 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSK---------------STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS   67 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH---------------HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC
Confidence            3567889999999999999999999988764               779999999987   4566789999999999998


Q ss_pred             CC--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          399 HN--VKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       399 ~~--~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      .+  ..+||++|.+|..+|+|++|+.+|+++|+++|+|.+
T Consensus        68 ~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~  107 (122)
T d1nzna_          68 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  107 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHH
Confidence            66  458999999999999999999999999999999864

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.49  E-value=4e-14  Score=105.56  Aligned_cols=84  Identities=24%  Similarity=0.391  Sum_probs=75.4

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCCC
Q 013755           61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP  140 (437)
Q Consensus        61 ~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~~  140 (437)
                      ++..||.|+|+|+++. ||+.|+++..  ..+.|.+|.+.++|||+++|.+|++|++++|  .|++...|+..+    .+
T Consensus         1 k~a~GD~V~idy~g~~-dG~~~~~~~~--~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~--~i~~p~~y~~~~----la   71 (85)
T d1hxva_           1 KLANGDIAIIDFTGIV-DNKKLASASA--QNYELTIGSNSFIKGFETGLIAMKVNQKKTL--ALTFPSDYHVKE----LQ   71 (85)
T ss_dssp             CCCSSEEEEEEEEEEE-TTEECSTTCC--SEEEEEETSSCSCTTHHHHHHTSCSSEEEEE--CCCCCTTSSSSG----GG
T ss_pred             CCCCCCEEEEEEEEEE-CCEEcccccc--cCCCEEECCcccCchHHHHhccCcCCCeEEE--EEEChhhcCccc----CC
Confidence            4789999999999997 9999998765  5689999999999999999999999999999  998888998765    36


Q ss_pred             CCcEEEEEEEece
Q 013755          141 NSVVQFEVELVSW  153 (437)
Q Consensus       141 ~~~~~f~v~l~~~  153 (437)
                      +.++.|+|+|.++
T Consensus        72 Gk~~~f~V~v~~V   84 (85)
T d1hxva_          72 SKPVTFEVVLKAI   84 (85)
T ss_dssp             SCCCEEEEEECCB
T ss_pred             CCcEEEEEEEEEe
Confidence            8889999999876

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.2e-13  Score=124.80  Aligned_cols=103  Identities=15%  Similarity=0.186  Sum_probs=95.1

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ..+...|..++..|++++|+..|++++...|..               ..+++++|.+|.++|++++|+.+|+++++++|
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  237 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---------------YLLWNKLGATLANGNQSEEAVAAYRRALELQP  237 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ccchhhHHHHHHHHHHhhhhccccccccccccc---------------ccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence            446678999999999999999999999998764               36799999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       399 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +++.+++++|.+|..+|++++|+..|++|++++|++..
T Consensus       238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChh
Confidence            99999999999999999999999999999999998864

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.1e-12  Score=113.92  Aligned_cols=101  Identities=15%  Similarity=0.083  Sum_probs=92.6

Q ss_pred             HHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCC
Q 013755          319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC  398 (437)
Q Consensus       319 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p  398 (437)
                      ..+++.|..++..|+|++|+..|++|++++|+.               ..+|+|+|.||.++|+|++|+.+|++|+...+
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~---------------~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~  101 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  101 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh---------------hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCc
Confidence            457899999999999999999999999998875               47899999999999999999999999998766


Q ss_pred             CC----------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          399 HN----------------VKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       399 ~~----------------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      .+                ..+++++|.++..+|++++|++.|++|+.+.|+.
T Consensus       102 ~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         102 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            54                3789999999999999999999999999998864

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.39  E-value=3.2e-13  Score=111.88  Aligned_cols=96  Identities=19%  Similarity=0.147  Sum_probs=84.8

Q ss_pred             hhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhc----------cCHHHHHHHHHHHH
Q 013755          325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL----------KDYQGAIELCSKVL  394 (437)
Q Consensus       325 g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~----------~~~~~Ai~~~~~al  394 (437)
                      +..+-+.+.|++|+..|++|+++.|++.               .+++++|.++..+          +.+++|+.+|++|+
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~~~P~~~---------------~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl   68 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYKSNPLDA---------------DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL   68 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHhhCCcch---------------HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            3445567789999999999999999864               7799999998854          55689999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhcc-----------HHHHHHHHHHHHHhCCCCC
Q 013755          395 DCDCHNVKALYRRAQAYMEIAD-----------LILAELDIKKAIEADPQNR  435 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~lg~-----------~~~A~~~~~~al~l~P~n~  435 (437)
                      +++|+++.+|+++|.+|..+|+           |++|+++|++|++++|+|.
T Consensus        69 ~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~  120 (145)
T d1zu2a1          69 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  120 (145)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHH
Confidence            9999999999999999988764           7999999999999999985

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.9e-12  Score=98.81  Aligned_cols=90  Identities=18%  Similarity=0.081  Sum_probs=78.0

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhC
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD  397 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  397 (437)
                      ++.+++.|..+++.|+|.+|+..|++|+++.+......        ..+..++.|||.||.++|++++|+.+|+++|+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~--------~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC--------ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            45578999999999999999999999999988654321        2245789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhc
Q 013755          398 CHNVKALYRRAQAYMEIA  415 (437)
Q Consensus       398 p~~~~a~~~~g~~~~~lg  415 (437)
                      |+++.++++++.....+.
T Consensus        77 P~~~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          77 PEHQRANGNLKYFEYIMA   94 (95)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC
Confidence            999999999988766553

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.28  E-value=4.2e-11  Score=102.41  Aligned_cols=114  Identities=12%  Similarity=-0.024  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCC-------CChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-------FVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAI  387 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~-------~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai  387 (437)
                      +...+.+...|+.++..|++++|+..|.+||.+.+....       .-..+...+......++.+++.++..+|+|++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            567889999999999999999999999999998765421       1124456677788899999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 013755          388 ELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAI  428 (437)
Q Consensus       388 ~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al  428 (437)
                      .+|+++++++|.+..+|.+++.+|..+|++.+|+..|+++.
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999983

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=9.9e-12  Score=116.45  Aligned_cols=118  Identities=16%  Similarity=0.103  Sum_probs=67.2

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC-------------C-hHHH------HHHHhhhHHHhhhHHHH
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-------------V-DDEQ------KLVKSLRVSCWLNSAAC  376 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~-~~~~------~~~~~~~~~~~~nla~~  376 (437)
                      -.+.+...|..+.+.+.+++|+..|++||.++|.+...             + +++.      .....-...+|+++|.+
T Consensus        42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~  121 (315)
T d2h6fa1          42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence            34455555666666677777777777777766654210             0 0000      01111123456666666


Q ss_pred             HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 013755          377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN  434 (437)
Q Consensus       377 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  434 (437)
                      +.++|++++|+.+++++++++|++..+|+++|.++..++++++|+.+|+++++++|+|
T Consensus       122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n  179 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN  179 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc
Confidence            6666666666666666666666666666666666666666666666666666666655

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.4e-11  Score=114.79  Aligned_cols=99  Identities=16%  Similarity=0.097  Sum_probs=93.9

Q ss_pred             HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV  401 (437)
Q Consensus       322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~  401 (437)
                      +++|..+++.|+|++|+..|+++++..|.+               ..+|.++|.||..+|++++|+.+|+++++++|++.
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   87 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKH---------------MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ   87 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHhhhccccccc
Confidence            578999999999999999999999998875               37799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          402 KALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .+++++|.+|..+|++++|++.|++++.++|.+.
T Consensus        88 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  121 (323)
T d1fcha_          88 TALMALAVSFTNESLQRQACEILRDWLRYTPAYA  121 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             cccccccccccccccccccccchhhHHHhccchH
Confidence            9999999999999999999999999999999764

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=7.3e-12  Score=117.36  Aligned_cols=101  Identities=11%  Similarity=0.038  Sum_probs=80.4

Q ss_pred             HHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCC
Q 013755          320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH  399 (437)
Q Consensus       320 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  399 (437)
                      .+..+|..+.+.|++++|+..|.+++++.|.               ...+|+++|.++.++++|++|+.+|+++|+++|.
T Consensus       114 a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~---------------n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~  178 (315)
T d2h6fa1         114 VWHHRRVLVEWLRDPSQELEFIADILNQDAK---------------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR  178 (315)
T ss_dssp             HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HHHHHhHHHHhhccHHHHHHHHhhhhhhhhc---------------chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc
Confidence            3344444444444444444444444444443               3578999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHhCCCCC
Q 013755          400 NVKALYRRAQAYMEIAD------LILAELDIKKAIEADPQNR  435 (437)
Q Consensus       400 ~~~a~~~~g~~~~~lg~------~~~A~~~~~~al~l~P~n~  435 (437)
                      +..+|+++|.++..++.      +++|+..+.++++++|+|.
T Consensus       179 n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~  220 (315)
T d2h6fa1         179 NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE  220 (315)
T ss_dssp             CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCch
Confidence            99999999999988876      6899999999999999985

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=6.7e-12  Score=118.55  Aligned_cols=119  Identities=17%  Similarity=0.073  Sum_probs=95.7

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCC------------ChHH-------HHHHHhhhHHHhhhHHHHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF------------VDDE-------QKLVKSLRVSCWLNSAACCL  378 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~~~~-------~~~~~~~~~~~~~nla~~~~  378 (437)
                      ...+...|..+++.|++++|+..|++++++.|.....            ..++       ..........++..++.++.
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  316 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence            4556677888888888888888888888877654311            0000       01111223467889999999


Q ss_pred             hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          379 KLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       379 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ++|++++|+..++++++++|+++.+++++|.+|..+|++++|+.+|++|++++|++++
T Consensus       317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~  374 (388)
T d1w3ba_         317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD  374 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999999999999999999999999999999999864

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.1e-11  Score=116.95  Aligned_cols=99  Identities=12%  Similarity=0.115  Sum_probs=92.7

Q ss_pred             HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH
Q 013755          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV  401 (437)
Q Consensus       322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~  401 (437)
                      .+.|+.+|+.|+|++|+..|+++++..|.+.               .+++++|.+|.++|+|++|+..|+++++++|+++
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~   67 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPDNT---------------GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA   67 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            4578999999999999999999999988653               6789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          402 KALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       402 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      .+++++|.+|..+|++++|+..+.++++.+|.+.
T Consensus        68 ~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  101 (388)
T d1w3ba_          68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI  101 (388)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhhhhccccccccccccccccccccc
Confidence            9999999999999999999999999999988753

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=2.2e-11  Score=109.74  Aligned_cols=96  Identities=11%  Similarity=-0.044  Sum_probs=83.2

Q ss_pred             hCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 013755          330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQ  409 (437)
Q Consensus       330 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~  409 (437)
                      ...+++.|+..+.+++...+..    +       ...+.+++++|.+|.++|+|++|+.+|+++|+++|+++.+|+++|.
T Consensus        11 ~~~~~e~al~~~~e~l~~~~~~----~-------~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~   79 (259)
T d1xnfa_          11 PTLQQEVILARMEQILASRALT----D-------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGI   79 (259)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCC----H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhhhcC----C-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhch
Confidence            3456778888888887643321    1       2246789999999999999999999999999999999999999999


Q ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          410 AYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       410 ~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +|..+|++++|+..|+++++++|++.+
T Consensus        80 ~~~~~g~~~~A~~~~~~al~~~p~~~~  106 (259)
T d1xnfa_          80 YLTQAGNFDAAYEAFDSVLELDPTYNY  106 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHhhhhh
Confidence            999999999999999999999998864

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.19  E-value=8.1e-12  Score=103.25  Aligned_cols=45  Identities=31%  Similarity=0.505  Sum_probs=42.4

Q ss_pred             CCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccc
Q 013755          233 GEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE  277 (437)
Q Consensus       233 ~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~  277 (437)
                      .+.|++|.+|.++++|||+.+|.+|+.|++..|.+||+.+||...
T Consensus        41 ~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ayG~~d   85 (151)
T d1ix5a_          41 EYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAYGNRN   85 (151)
T ss_dssp             CCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSSCSCC
T ss_pred             CCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhccccc
Confidence            567999999999999999999999999999999999999999754

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=9.9e-11  Score=94.24  Aligned_cols=69  Identities=25%  Similarity=0.216  Sum_probs=65.4

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ..+.++|.++++.++|++|+.+|+++|+++|+++.+++++|.+|..+|+|++|+.+|++|++++|++..
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~   73 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE   73 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHH
Confidence            346699999999999999999999999999999999999999999999999999999999999998764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=7e-11  Score=89.87  Aligned_cols=69  Identities=22%  Similarity=0.110  Sum_probs=63.3

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN-------VKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~-------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      .-++++|.+++++|+|.+|+..+++|+++.|.+       ..+|+++|.++..+|++++|+..|+++|+++|++++
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~   81 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR   81 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHH
Confidence            347899999999999999999999999986644       688999999999999999999999999999999864

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=1.2e-10  Score=89.86  Aligned_cols=88  Identities=24%  Similarity=0.429  Sum_probs=72.9

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCC
Q 013755           60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLP  139 (437)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~  139 (437)
                      +.++.||.|+|+|+++. ||+.+.+...  ..+.|.+|.+.+++||+++|.||++|+++.|++.+|.++.-      .--
T Consensus        13 r~a~~GD~v~id~~~~~-dG~~~~~~~~--~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~------~~l   83 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTGSV-DGEEFEGGKA--SDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHA------ENL   83 (106)
T ss_dssp             SSCCTTEEEEEEEECCS-SSSCCSTTEE--EEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCC------TTT
T ss_pred             ccccCCCEEEEEEEEEE-CCEECCCCcc--cceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCc------hhh
Confidence            56789999999999875 9998876543  45899999999999999999999999999997788865432      123


Q ss_pred             CCCcEEEEEEEeceeee
Q 013755          140 PNSVVQFEVELVSWITV  156 (437)
Q Consensus       140 ~~~~~~f~v~l~~~~~~  156 (437)
                      ++.++.|.|++.++...
T Consensus        84 aGK~v~f~V~v~~i~~~  100 (106)
T d1l1pa_          84 KGKAAKFAINLKKVEER  100 (106)
T ss_dssp             TTCCEEEEEEEEEEECC
T ss_pred             CCCEEEEEEEEEEeccc
Confidence            78889999999998653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.05  E-value=5.8e-10  Score=94.11  Aligned_cols=92  Identities=14%  Similarity=0.024  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      ...+..+.++|..+++.|+|++|+..|.+||++.|..               ..+|+++|.+|..+|+|++|+.+|++++
T Consensus        74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~a~~~~g~~~~~l~~~~~A~~~~~~al  138 (169)
T d1ihga1          74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN---------------TKALYRRAQGWQGLKEYDQALADLKKAQ  138 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhh---------------hhHHHhHHHHHHHccCHHHHHHHHHHHH
Confidence            3456677889999999999999999999999998865               4779999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHH
Q 013755          395 DCDCHNVKALYRRAQAYMEIADLILAE  421 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~lg~~~~A~  421 (437)
                      +++|++..++..++.++..+..+.++.
T Consensus       139 ~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         139 EIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998888877664

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.04  E-value=3.9e-10  Score=88.37  Aligned_cols=69  Identities=17%  Similarity=0.060  Sum_probs=65.6

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ..++++|.++++.|++.+|+..+++++..+|+++.+|+.+|.++..++++++|+.+|++|++++|++.+
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~   85 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA   85 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccccc
Confidence            346789999999999999999999999999999999999999999999999999999999999999853

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.01  E-value=2.1e-09  Score=90.56  Aligned_cols=98  Identities=13%  Similarity=0.023  Sum_probs=84.7

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..+..+.++|..+++.++|.+|+..|++++.+.|.+               ..+++++|.||..+|+|++|+.+|.++++
T Consensus        62 ~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~---------------~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          62 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN---------------EKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345567789999999999999999999999998875               47899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhccHHH-HHHHHHHHH
Q 013755          396 CDCHNVKALYRRAQAYMEIADLIL-AELDIKKAI  428 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~lg~~~~-A~~~~~~al  428 (437)
                      ++|++..++..++.+...++++.+ ....|.+.+
T Consensus       127 l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         127 VNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999988887765 334444433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=4.2e-10  Score=97.05  Aligned_cols=68  Identities=16%  Similarity=0.125  Sum_probs=64.9

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ..+.+.|.++++.|+|++|+..|++||+++|+++.+|+++|.||..+|+|++|+.+|++|++++|++.
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~   72 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV   72 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcH
Confidence            34668999999999999999999999999999999999999999999999999999999999999875

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.00  E-value=1.8e-10  Score=90.17  Aligned_cols=88  Identities=22%  Similarity=0.487  Sum_probs=72.9

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeEEEeCCccccccHHHHhccccCCceEEEEEecCCCCCCCCCCCCCCC
Q 013755           60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLP  139 (437)
Q Consensus        60 ~~~~~gd~V~v~y~~~~~~G~~~~st~~~~~p~~~~~g~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~ayg~~~~~~i~  139 (437)
                      +.++.||.|+|+|+++. ||+.+.....  ..+.|.+|.+.++++|+++|.||++|++++|++.+|.++.-..      -
T Consensus        22 r~a~~gD~v~id~~~~~-dG~~~~~~~~--~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~------l   92 (113)
T d1t11a3          22 EAAENGKRVSIDFVGSI-DGVEFEGGKA--ENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN------L   92 (113)
T ss_dssp             CCCCTTCEEEEEEEEES-SSSCCTTCEE--EEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT------T
T ss_pred             ccccCCCEEEEEEEEEE-CCEEccCCcc--ceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCccc------c
Confidence            45889999999999886 8998877543  5689999999999999999999999999999778887543221      2


Q ss_pred             CCCcEEEEEEEeceeee
Q 013755          140 PNSVVQFEVELVSWITV  156 (437)
Q Consensus       140 ~~~~~~f~v~l~~~~~~  156 (437)
                      ++.+..|.|++.++...
T Consensus        93 aGk~~~f~v~v~~Ik~~  109 (113)
T d1t11a3          93 KGKAAKFAIKVNKVEAR  109 (113)
T ss_dssp             SSCEEEECCCEEEEEEE
T ss_pred             CCCeEEEEEEEEEEEec
Confidence            67889999999988643

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=7.6e-10  Score=92.32  Aligned_cols=68  Identities=26%  Similarity=0.241  Sum_probs=64.7

Q ss_pred             HHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       368 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ..+...|.+|++.|+|++|+.+|+++++++|+++.+|+++|.+|+.+|++++|+.+|+++++++|++.
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~   78 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI   78 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccch
Confidence            44667899999999999999999999999999999999999999999999999999999999999875

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.3e-09  Score=92.11  Aligned_cols=90  Identities=19%  Similarity=0.068  Sum_probs=81.6

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      ....+.+.|..+++.|+|++|+..|++||.+.|.+               ..+++++|.||..+|+|++|+.+|++++++
T Consensus        61 ~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~---------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          61 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN---------------EKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhcccccchhhhhhhccccc---------------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            34556789999999999999999999999998875               478999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhccHHHHH
Q 013755          397 DCHNVKALYRRAQAYMEIADLILAE  421 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~~~A~  421 (437)
                      +|+|+.+...++.++..+.++.+..
T Consensus       126 ~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         126 YPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888777654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=9.5e-10  Score=86.79  Aligned_cols=67  Identities=21%  Similarity=0.210  Sum_probs=64.1

Q ss_pred             hhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       370 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      +.+.|..+++.|+|++|+..|+++|+++|+++.+|+.+|.+|..+|++++|+.+|+++++++|++..
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~   72 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK   72 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhh
Confidence            5578999999999999999999999999999999999999999999999999999999999999853

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.96  E-value=1.7e-09  Score=89.63  Aligned_cols=86  Identities=12%  Similarity=0.022  Sum_probs=77.7

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      .+..+.++|..+++.++|++|+..|++||.+.|.+               ..+|+++|.||..+|+|++|+.+|++++++
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~---------------~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN---------------VKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhccccccchh---------------hhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34567789999999999999999999999998875               378999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhccH
Q 013755          397 DCHNVKALYRRAQAYMEIADL  417 (437)
Q Consensus       397 ~p~~~~a~~~~g~~~~~lg~~  417 (437)
                      +|+|..+...++.+..++.+.
T Consensus       131 ~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1         131 NPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999888776543

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=98.94  E-value=1.4e-09  Score=80.32  Aligned_cols=74  Identities=14%  Similarity=0.223  Sum_probs=59.6

Q ss_pred             EEEEEecCccEEeecCCCCCCCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEE
Q 013755          215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYE  294 (437)
Q Consensus       215 ~y~~~~~~g~~fd~~~~~~~~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~  294 (437)
                      +|++++ ||+.|+++   ....+.|.+|.+.++|||+.+|.+|++||+..|.+++...|+..+.        +|.++.|+
T Consensus        11 dy~g~~-dG~~~~~~---~~~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~l--------aGk~~~f~   78 (85)
T d1hxva_          11 DFTGIV-DNKKLASA---SAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL--------QSKPVTFE   78 (85)
T ss_dssp             EEEEEE-TTEECSTT---CCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG--------GSCCCEEE
T ss_pred             EEEEEE-CCEEcccc---cccCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCcccC--------CCCcEEEE
Confidence            444443 56666654   2457899999999999999999999999999999998888886543        46789999


Q ss_pred             EEEeee
Q 013755          295 VEMMDF  300 (437)
Q Consensus       295 vel~~~  300 (437)
                      |+|+.+
T Consensus        79 V~v~~V   84 (85)
T d1hxva_          79 VVLKAI   84 (85)
T ss_dssp             EEECCB
T ss_pred             EEEEEe
Confidence            999876

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=4.7e-09  Score=96.38  Aligned_cols=110  Identities=16%  Similarity=0.093  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      .+.+..+...|+.|...++|++|+..|.+|+.+.......         .....+|.++|.||.+++++++|+.+|++++
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~---------~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~  104 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE---------DEAGNTYVEAYKCFKSGGNSVNAVDSLENAI  104 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh
Confidence            4557788899999999999999999999999986543321         2245789999999999999999999999999


Q ss_pred             HhCCCC------HHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCC
Q 013755          395 DCDCHN------VKALYRRAQAYME-IADLILAELDIKKAIEADPQ  433 (437)
Q Consensus       395 ~~~p~~------~~a~~~~g~~~~~-lg~~~~A~~~~~~al~l~P~  433 (437)
                      ++.+.+      ..++.++|.+|.. ++++++|+..|++|+++.+.
T Consensus       105 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~  150 (290)
T d1qqea_         105 QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ  150 (290)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            986655      5789999999865 79999999999999988553

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.2e-09  Score=85.31  Aligned_cols=85  Identities=13%  Similarity=0.061  Sum_probs=70.9

Q ss_pred             HHHHHHHhhHHHhCC---cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          318 AGRKKEEGNLLFKNG---KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      +..+++.|..+++.+   ++++|+..|++++...|...             ...+++++|.||.++|+|++|+.+|+++|
T Consensus        33 ~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~-------------~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL   99 (122)
T d1nzna_          33 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE-------------QRDYVFYLAVGNYRLKEYEKALKYVRGLL   99 (122)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH-------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch-------------HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            456778888888744   56789999999998765421             34689999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhc
Q 013755          395 DCDCHNVKALYRRAQAYMEIA  415 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~lg  415 (437)
                      +++|++..|+..++.+..++.
T Consensus       100 ~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_         100 QTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHH
T ss_pred             HhCcCCHHHHHHHHHHHHHHc
Confidence            999999999999888776553

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.4e-09  Score=108.06  Aligned_cols=98  Identities=9%  Similarity=-0.028  Sum_probs=69.7

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  400 (437)
                      +...|..+.+.+++++|+..|.+++...+                 ..++.++|.++..+++|++|+.+|.+|++++|++
T Consensus       123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~-----------------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~  185 (497)
T d1ya0a1         123 SSQLGIISNKQTHTSAIVKPQSSSCSYIC-----------------QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN  185 (497)
T ss_dssp             --------------------CCHHHHHHH-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB
T ss_pred             HHHhHHHHHhCCCHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            44455555555666666666665555443                 3578899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ..+|+++|.++...|++.+|+.+|.+||.++|..+
T Consensus       186 ~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~  220 (497)
T d1ya0a1         186 GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP  220 (497)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCH
Confidence            99999999999999999999999999999988764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=2e-08  Score=92.04  Aligned_cols=112  Identities=19%  Similarity=0.108  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh-ccCHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK-LKDYQGAIELCSKV  393 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~Ai~~~~~a  393 (437)
                      ...+..+.+.|+.|.+.|++++|+..|++++.+.+.....         .....++.++|.+|.. +++|++|+.+|++|
T Consensus        74 ~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A  144 (290)
T d1qqea_          74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---------RRGANFKFELGEILENDLHDYAKAIDCYELA  144 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc---------hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence            3456788999999999999999999999999998765432         2235678899988865 69999999999999


Q ss_pred             HHhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          394 LDCDCHN------VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       394 l~~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +++.+..      ..++.++|.++..+|+|++|+..|++++.+.|.+.
T Consensus       145 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            9874422      46689999999999999999999999999988765

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.66  E-value=5.2e-08  Score=87.97  Aligned_cols=97  Identities=11%  Similarity=-0.057  Sum_probs=86.5

Q ss_pred             HhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHH
Q 013755          324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA  403 (437)
Q Consensus       324 ~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a  403 (437)
                      ++..+++.|++++|+..|+++++..|.+.               .++.+++.+|...|+|++|+..++++++++|++..+
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~---------------~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~   66 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPKDA---------------SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   66 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHH
Confidence            35678999999999999999999998864               779999999999999999999999999999987533


Q ss_pred             -----------------------------------HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          404 -----------------------------------LYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       404 -----------------------------------~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                                                         ++.++.++...|++++|++.++++.++.|+++
T Consensus        67 ~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          67 ASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence                                               46677788888999999999999999999875

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.66  E-value=3e-08  Score=81.13  Aligned_cols=90  Identities=12%  Similarity=0.031  Sum_probs=74.6

Q ss_pred             HHHHHHHHhhHHHh----------CCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhcc-----
Q 013755          317 AAGRKKEEGNLLFK----------NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-----  381 (437)
Q Consensus       317 ~~~~~~~~g~~~~~----------~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-----  381 (437)
                      .+..+...|..++.          .+.+++|+..|++|+++.|.+.               .+|+|+|.+|..++     
T Consensus        30 ~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~---------------~a~~~lG~~y~~~g~~~~~   94 (145)
T d1zu2a1          30 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD---------------EAVWCIGNAYTSFAFLTPD   94 (145)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHHHCCC
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhh---------------HHHhhHHHHHHHcccchhh
Confidence            35667777877764          4567899999999999988764               77999999998875     


Q ss_pred             ------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Q 013755          382 ------DYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAE  421 (437)
Q Consensus       382 ------~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~  421 (437)
                            +|.+|+.+|++|++++|++..++..++.+....+.+.++.
T Consensus        95 ~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~  140 (145)
T d1zu2a1          95 ETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY  140 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence                  4799999999999999999999999998887777776653

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=2.9e-07  Score=84.60  Aligned_cols=107  Identities=10%  Similarity=-0.014  Sum_probs=91.1

Q ss_pred             HHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       316 ~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      ..++...-+|..++..|++++|+..|+++|...|....          .....++.++|.+|..+|++++|+..++++++
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~----------~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   79 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF----------YSRIVATSVLGEVLHCKGELTRSLALMQQTEQ   79 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCc----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44566666899999999999999999999999876431          22456789999999999999999999999998


Q ss_pred             hCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          396 CDCHN------VKALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       396 ~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                      +.+..      ..+++.++.++...+++..|...+.+++.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~  122 (366)
T d1hz4a_          80 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN  122 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            76533      46789999999999999999999999998754

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.45  E-value=2.2e-07  Score=86.45  Aligned_cols=103  Identities=15%  Similarity=0.108  Sum_probs=86.9

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccC--HHHHHHHHHHHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD--YQGAIELCSKVLD  395 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~--~~~Ai~~~~~al~  395 (437)
                      ...+...+..+...+++.+|+..|++++...|.+.               .+++++|.++..+++  +.+|+..++++++
T Consensus        73 l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~---------------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  137 (334)
T d1dcea1          73 LQHLETEKSPEESAALVKAELGFLESCLRVNPKSY---------------GTWHHRCWLLSRLPEPNWARELELCARFLE  137 (334)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcH---------------HHHHHhhHHHHHhccccHHHHHHHHHHHHh
Confidence            34455667777888889999999999999988754               668888888777664  8999999999999


Q ss_pred             hCCCCHHHH-HHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          396 CDCHNVKAL-YRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       396 ~~p~~~~a~-~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ++|++..++ +++|.++...+++++|+..++++++++|+|.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~  178 (334)
T d1dcea1         138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY  178 (334)
T ss_dssp             HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred             hCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCH
Confidence            999998886 5678899999999999999999999999875

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.40  E-value=1.8e-06  Score=80.02  Aligned_cols=101  Identities=8%  Similarity=-0.046  Sum_probs=76.6

Q ss_pred             hCC-cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 013755          330 KNG-KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRA  408 (437)
Q Consensus       330 ~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g  408 (437)
                      ..+ .+++|+..|.++|..+|++...    |... ......+.+.+..+...+++.+|+.+++++++.+|++..+++.+|
T Consensus        40 ~~~~~~~~al~~~~~~l~~~P~~~~a----~~~r-~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~  114 (334)
T d1dcea1          40 QAGELDESVLELTSQILGANPDFATL----WNCR-REVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC  114 (334)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHH----HHHH-HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHCCCcHHH----HHHH-HHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhh
Confidence            444 4589999999999998876310    0000 011122233344455667799999999999999999999999999


Q ss_pred             HHHHHhcc--HHHHHHHHHHHHHhCCCCC
Q 013755          409 QAYMEIAD--LILAELDIKKAIEADPQNR  435 (437)
Q Consensus       409 ~~~~~lg~--~~~A~~~~~~al~l~P~n~  435 (437)
                      .++..+++  +++|+..++++++++|++.
T Consensus       115 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~  143 (334)
T d1dcea1         115 WLLSRLPEPNWARELELCARFLEADERNF  143 (334)
T ss_dssp             HHHHTCSSCCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhccccHHHHHHHHHHHHhhCchhh
Confidence            99998875  8999999999999999874

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=5.1e-07  Score=82.87  Aligned_cols=105  Identities=13%  Similarity=0.052  Sum_probs=88.8

Q ss_pred             HHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHh
Q 013755          317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC  396 (437)
Q Consensus       317 ~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  396 (437)
                      ....+...|..+...+++++|...|++++...+....           .....+.++|.+|..+|++++|+..+++++..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  280 (366)
T d1hz4a_         212 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH-----------FLQGQWRNIARAQILLGEFEPAEIVLEELNEN  280 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG-----------GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3445677888899999999999999999887665432           23456789999999999999999999999854


Q ss_pred             ------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 013755          397 ------DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP  432 (437)
Q Consensus       397 ------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  432 (437)
                            .|....+++.+|.+|..+|++++|++.|++|+++.+
T Consensus       281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         281 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence                  455678999999999999999999999999998754

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=5e-07  Score=70.35  Aligned_cols=70  Identities=13%  Similarity=0.188  Sum_probs=61.7

Q ss_pred             HHHhhhHHHHHHhc---cCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCCC
Q 013755          367 VSCWLNSAACCLKL---KDYQGAIELCSKVLDCDCHNV-KALYRRAQAYMEIADLILAELDIKKAIEADPQNRN  436 (437)
Q Consensus       367 ~~~~~nla~~~~~~---~~~~~Ai~~~~~al~~~p~~~-~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~  436 (437)
                      ....++.|.|+.+.   .+..+|+..+++++..+|.+. .++|.+|.+|.++|+|++|+.+++++|+++|+|..
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q  108 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  108 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence            35678888888865   456799999999999998774 89999999999999999999999999999999863

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.35  E-value=1.2e-06  Score=72.11  Aligned_cols=82  Identities=18%  Similarity=0.047  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      ...+..+.+.|..+++.|+|++|+..|+++|.+.+.......+.    ......+++|+|.+|..+|++++|+.+|++|+
T Consensus        52 ~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          52 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE----GKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc----cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788999999999999999999999999987644322111    12234679999999999999999999999999


Q ss_pred             HhCCCC
Q 013755          395 DCDCHN  400 (437)
Q Consensus       395 ~~~p~~  400 (437)
                      ++.|..
T Consensus       128 ~l~~~~  133 (156)
T d2hr2a1         128 EMIEER  133 (156)
T ss_dssp             HHHHHC
T ss_pred             HhhHHh
Confidence            997644

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.7e-06  Score=83.68  Aligned_cols=86  Identities=14%  Similarity=0.031  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHH
Q 013755          315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL  394 (437)
Q Consensus       315 ~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  394 (437)
                      +.....+...|..+...++|++|+..|++|+.+.|++.               .+|++||.++...|++.+|+.+|.+||
T Consensus       149 ~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~---------------~~~~~Lg~~~~~~~~~~~A~~~y~ral  213 (497)
T d1ya0a1         149 YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG---------------QPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS---------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch---------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34456788899999999999999999999999999875               679999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhc
Q 013755          395 DCDCHNVKALYRRAQAYMEIA  415 (437)
Q Consensus       395 ~~~p~~~~a~~~~g~~~~~lg  415 (437)
                      ..+|..+.|+.+++.++.+..
T Consensus       214 ~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         214 AVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             SSSBCCHHHHHHHHHHHHHHT
T ss_pred             hCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999887654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=5.8e-06  Score=64.14  Aligned_cols=82  Identities=15%  Similarity=0.105  Sum_probs=65.0

Q ss_pred             HHHHHHhhHHHhCC---cHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHH
Q 013755          319 GRKKEEGNLLFKNG---KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD  395 (437)
Q Consensus       319 ~~~~~~g~~~~~~g---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  395 (437)
                      +..++.|-.+.+..   +.++|+..++++++..|..              ...++++||.+|+++|+|++|+.+++++|+
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~--------------~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------------RRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh--------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            44556666666553   5678999999998876542              347899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHh
Q 013755          396 CDCHNVKALYRRAQAYMEI  414 (437)
Q Consensus       396 ~~p~~~~a~~~~g~~~~~l  414 (437)
                      ++|+|..|...+-.+-.++
T Consensus       102 ieP~n~qA~~L~~~Ie~~~  120 (124)
T d2pqrb1         102 HERNNKQVGALKSMVEDKI  120 (124)
T ss_dssp             HCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHH
Confidence            9999999987766655443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.99  E-value=5.7e-06  Score=74.15  Aligned_cols=62  Identities=15%  Similarity=0.060  Sum_probs=57.9

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          374 AACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       374 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +.-.++.|++++|+..++++++.+|+++.++..+|.+|...|++++|+..|+++++++|++.
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~   64 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   64 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH
Confidence            34567889999999999999999999999999999999999999999999999999999764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=2.8e-05  Score=70.90  Aligned_cols=99  Identities=7%  Similarity=-0.034  Sum_probs=74.4

Q ss_pred             HHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHH-HhccCHHHHHHHHHHHHHhCCCC
Q 013755          322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACC-LKLKDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       322 ~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~~~~~~~~Ai~~~~~al~~~p~~  400 (437)
                      ...++...+.++++.|...|.+|+...|...               ..+.+.|... ...++.+.|...|++++..+|++
T Consensus       138 ~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~---------------~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~  202 (308)
T d2onda1         138 IQYMKFARRAEGIKSGRMIFKKAREDARTRH---------------HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI  202 (308)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT---------------HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhh
Confidence            3444455555666666666666666655433               4456666554 34578899999999999999999


Q ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCC
Q 013755          401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       401 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      +..+...+..+...|+++.|+..|++|+...|.++
T Consensus       203 ~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         203 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            99999999999999999999999999999877664

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=2.2e-05  Score=59.64  Aligned_cols=62  Identities=6%  Similarity=0.094  Sum_probs=49.8

Q ss_pred             CCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeeccc
Q 013755          235 QPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEK  304 (437)
Q Consensus       235 ~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~~  304 (437)
                      ..+.|.+|.+.+++||+.+|.+|++||...|.+..-..|..        .--.|..+.|.|+|+.+.+..
T Consensus        40 ~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~--------~~laGK~v~f~V~v~~i~~~~  101 (106)
T d1l1pa_          40 SDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHA--------ENLKGKAAKFAINLKKVEERE  101 (106)
T ss_dssp             EEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCC--------TTTTTCCEEEEEEEEEEECCC
T ss_pred             cceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCc--------hhhCCCEEEEEEEEEEecccc
Confidence            45789999999999999999999999999999864333321        133578999999999998653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.80  E-value=4e-05  Score=64.17  Aligned_cols=69  Identities=12%  Similarity=-0.028  Sum_probs=62.6

Q ss_pred             HHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHhccHHHHHHHH
Q 013755          367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV----------------------KALYRRAQAYMEIADLILAELDI  424 (437)
Q Consensus       367 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~----------------------~a~~~~g~~~~~lg~~~~A~~~~  424 (437)
                      ...+++.|......|++++|+..|.+||.+.+...                      .++.+++.++..+|++++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            45688999999999999999999999999977542                      67899999999999999999999


Q ss_pred             HHHHHhCCCCC
Q 013755          425 KKAIEADPQNR  435 (437)
Q Consensus       425 ~~al~l~P~n~  435 (437)
                      ++++.++|.+.
T Consensus        91 ~~al~~~P~~e  101 (179)
T d2ff4a2          91 EALTFEHPYRE  101 (179)
T ss_dssp             HHHHHHSTTCH
T ss_pred             HHHHHhCCccH
Confidence            99999999875

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=0.00015  Score=65.94  Aligned_cols=101  Identities=10%  Similarity=-0.032  Sum_probs=84.2

Q ss_pred             HHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCC
Q 013755          321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN  400 (437)
Q Consensus       321 ~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~  400 (437)
                      +...+....+.|+++.|...|.+++...|.+.              ..++...+....+.++++.|...+.++++..|.+
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~--------------~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~  167 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--------------TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT--------------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhcCCh--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Confidence            34456667788999999999999998776543              2457788888889999999999999999999999


Q ss_pred             HHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCC
Q 013755          401 VKALYRRAQAYM-EIADLILAELDIKKAIEADPQNR  435 (437)
Q Consensus       401 ~~a~~~~g~~~~-~lg~~~~A~~~~~~al~l~P~n~  435 (437)
                      ...+...|.... ..++.+.|...|++++...|++.
T Consensus       168 ~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~  203 (308)
T d2onda1         168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP  203 (308)
T ss_dssp             THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhH
Confidence            999988887654 45889999999999999988874

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.72  E-value=0.00021  Score=63.01  Aligned_cols=96  Identities=18%  Similarity=0.108  Sum_probs=81.6

Q ss_pred             HHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh----ccCHHHHHHHHHHH
Q 013755          318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK----LKDYQGAIELCSKV  393 (437)
Q Consensus       318 ~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~~~~~~Ai~~~~~a  393 (437)
                      ++.+...|..++.+++|++|+..|++|.+...                 ..++++||.+|..    ..++..|..++.++
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~-----------------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a   64 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKE-----------------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   64 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHcCCCcchhHHHHHHhhccc
Confidence            46788999999999999999999999987531                 3678999999997    77999999999998


Q ss_pred             HHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCC
Q 013755          394 LDCDCHNVKALYRRAQAYME----IADLILAELDIKKAIEADP  432 (437)
Q Consensus       394 l~~~p~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~P  432 (437)
                      ...  .++.+.+.+|.++..    ..+.+.|...++++....+
T Consensus        65 ~~~--~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~  105 (265)
T d1ouva_          65 CDL--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY  105 (265)
T ss_dssp             HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             ccc--cccchhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            876  478899999988875    4678999999999987654

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=97.68  E-value=1.8e-05  Score=60.94  Aligned_cols=62  Identities=5%  Similarity=0.062  Sum_probs=48.7

Q ss_pred             CCeEEEcCCCCcchHHHHHhcccccCcEEEEEEcCCCCCCccccccccccCCCCceEEEEEEEeeeeccc
Q 013755          235 QPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEK  304 (437)
Q Consensus       235 ~p~~f~lg~~~~~~gl~~~l~~m~~GE~~~i~i~~~~~yg~~~~~~~~~~ip~~~~l~~~vel~~~~~~~  304 (437)
                      ..+.|.+|.+..+++|+.+|.+|++||...|.+..-..|...        --.|.++.|.|.|+.+....
T Consensus        49 ~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~--------~laGk~~~f~v~v~~Ik~~~  110 (113)
T d1t11a3          49 ENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAE--------NLKGKAAKFAIKVNKVEARE  110 (113)
T ss_dssp             EEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCT--------TTSSCEEEECCCEEEEEEEE
T ss_pred             ceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCcc--------ccCCCeEEEEEEEEEEEecc
Confidence            467899999999999999999999999999888643333321        12467899999999987643

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.58  E-value=0.00032  Score=55.24  Aligned_cols=82  Identities=13%  Similarity=-0.029  Sum_probs=68.7

Q ss_pred             CCcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHh----ccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 013755          331 NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK----LKDYQGAIELCSKVLDCDCHNVKALYR  406 (437)
Q Consensus       331 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~~~~~~Ai~~~~~al~~~p~~~~a~~~  406 (437)
                      ..++++|+..|+++.+...                 ..++++||.+|..    ..++.+|+.+|+++.+.  .++.+.++
T Consensus        36 ~~~~~~a~~~~~~aa~~g~-----------------~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~   96 (133)
T d1klxa_          36 QINKQKLFQYLSKACELNS-----------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLI   96 (133)
T ss_dssp             TSCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             ccCHHHHHHHHhhhhcccc-----------------hhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHH
Confidence            4577888888888876531                 3668899999886    56899999999999886  58999999


Q ss_pred             HHHHHHH----hccHHHHHHHHHHHHHhC
Q 013755          407 RAQAYME----IADLILAELDIKKAIEAD  431 (437)
Q Consensus       407 ~g~~~~~----lg~~~~A~~~~~~al~l~  431 (437)
                      +|.+|..    ..++.+|+.+|++|.++.
T Consensus        97 Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          97 LGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            9999987    568999999999998864

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.35  E-value=0.00069  Score=59.54  Aligned_cols=64  Identities=14%  Similarity=0.105  Sum_probs=56.7

Q ss_pred             HHHhhhHHHHHHh----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCC
Q 013755          367 VSCWLNSAACCLK----LKDYQGAIELCSKVLDCDCHNVKALYRRAQAYME----IADLILAELDIKKAIEADP  432 (437)
Q Consensus       367 ~~~~~nla~~~~~----~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~P  432 (437)
                      ..+++++|.+|..    ..++++|+.+|+++.+.  +++.+++++|.+|..    ..++++|+.+|++|..+..
T Consensus       178 ~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         178 SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             cccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            4678999999987    67999999999999988  579999999999986    4489999999999998764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.92  E-value=0.0024  Score=49.86  Aligned_cols=79  Identities=18%  Similarity=0.034  Sum_probs=64.0

Q ss_pred             CcHHHHHHHHHHHHHhhccCCCCChHHHHHHHhhhHHHhhhHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 013755          332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAY  411 (437)
Q Consensus       332 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~  411 (437)
                      .++++|+..|++|.+...  .               .++++|+.  ....++++|+..++++.+.  +++.+++++|..|
T Consensus         7 kd~~~A~~~~~kaa~~g~--~---------------~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y   65 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNE--M---------------FGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFY   65 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTC--T---------------THHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCC--h---------------hhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhh
Confidence            478999999999987642  1               33555653  4467899999999999886  6899999999999


Q ss_pred             HH----hccHHHHHHHHHHHHHhC
Q 013755          412 ME----IADLILAELDIKKAIEAD  431 (437)
Q Consensus       412 ~~----lg~~~~A~~~~~~al~l~  431 (437)
                      ..    ..++++|+.+|+++.+..
T Consensus        66 ~~g~~~~~d~~~A~~~~~~aa~~g   89 (133)
T d1klxa_          66 ENGKYVKKDLRKAAQYYSKACGLN   89 (133)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhccccchhhHHHHHHHhhhhccC
Confidence            86    567999999999998764

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.30  E-value=0.55  Score=33.36  Aligned_cols=37  Identities=19%  Similarity=0.126  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhc
Q 013755          313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS  349 (437)
Q Consensus       313 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~  349 (437)
                      ..+..+..+..+|..+-+.|+|++|+.+|.+|++++-
T Consensus        10 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~   46 (93)
T d1wfda_          10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLL   46 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            4567788899999999999999999999999998753

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.27  E-value=0.4  Score=32.72  Aligned_cols=37  Identities=30%  Similarity=0.369  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHhhHHHhCCcHHHHHHHHHHHHHhhcc
Q 013755          314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE  350 (437)
Q Consensus       314 ~~~~~~~~~~~g~~~~~~g~~~~A~~~y~~al~~~~~  350 (437)
                      .+..+..+-..|..+.+.|+|++||.++++|..++..
T Consensus         4 PLN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~e   40 (83)
T d2crba1           4 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   40 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4667888888999999999999999999999998754