Citrus Sinensis ID: 013760

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
Protein Sequence
MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVASDQEILNSEYKRMYAL
Secondary Structure (PSIPRED)
ccHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHHcHHcccccccccHHHHHccccccHHHcccccHHHHHccccccHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEcccccEEEEEEHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHccccccEEEEc
Coil and Loop (DISEMBL)
MDMIHFMWQQSRVILVLKELLgefpnlvmttdlscsTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVskdpstgfrtdkkgqTALHMAVKGQNEDIVLELirpdpsvlklednkgnTALHIAIKKGRTQIVRCLLSIEgidvnslnkagespldVAEKLGNTELFSLLKEAGaahskdhgkppsatkQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIftvpgqyveektegfslGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRkaesrsrsfsmsvASDQEILNSEYKRMYAL
Flexible Loop (DISEMBL)
MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALvskdpstgfrtdkkgqtALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAhskdhgkppsATKQLKQTVSDIKHDVQSqlqqsrqtgfkVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNirkaesrsrsfsmsvasdqeilnseykrmyal
Low Complexity Region (SEG)
MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFkvhkiakklkklhiSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAvvvvqtsvvvIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAEsrsrsfsmsvasDQEILNSEYKRMYAL
Disordered region (IsUnstruct)
***IHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV*****************LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN*****************LF**********************************************FKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEA*************************************
Disordered Region (DISOPRED)
MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQ*************************SGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAK****************************EYKRMYAL
Disordered Region (DISEMBL)
MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA***************************************GFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRN***************ASDQEILNSEYKRMYAL
Disordered Region (DISPRO)
MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKL**********************ILNSEYKRMYAL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVASDQEILNSEYKRMYAL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	437	2.2.26 [Sep-21-2011]
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.938	0.782	0.510	1e-110
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.892	0.733	0.455	2e-93
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.933	0.691	0.450	6e-92
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.382	0.141	0.362	6e-15
Q8VHK2	1430	Caskin-1 OS=Rattus norveg	yes	no	0.352	0.107	0.355	1e-14
Q6P9K8	1431	Caskin-1 OS=Mus musculus	yes	no	0.352	0.107	0.349	3e-14
Q8WXD9	1431	Caskin-1 OS=Homo sapiens	yes	no	0.352	0.107	0.349	3e-14
Q5F478	990	Serine/threonine-protein	no	no	0.395	0.174	0.373	4e-14
Q502K3	1071	Serine/threonine-protein	no	no	0.366	0.149	0.337	6e-14
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	no	0.354	0.039	0.364	7e-14

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score =  397 bits (1020), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/431 (51%), Positives = 304/431 (70%), Gaps = 21/431 (4%)

Query: 16  VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 75
           VL  L+   P L  T D S +TALHTAA+QGH ++V FLL+   +LA IAR+NGKT LHS
Sbjct: 106 VLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHS 165

Query: 76  AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 135
           AAR GH  +VK L+ K      R DKKGQTALHMAVKGQN +IV  L+  D S++   DN
Sbjct: 166 AARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADN 225

Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           KGNT LHIA++K R +IV+ +L    +   ++NK+GE+ LD+AEK G  E+  LL++ G 
Sbjct: 226 KGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGM 285

Query: 196 AHSK-----DHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISG 250
            +++     +  +P  ++++LK+TVS+I H+V +QL+Q+ +T  ++  IAK++ K+H  G
Sbjct: 286 QNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEG 345

Query: 251 LNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTE---GFSLGQAHIAKNAAFIIFFVF 307
           LNNAINS+T+VA+LIATVAFAAIF VPGQY ++  +   G+SLG+A  A    F+IF VF
Sbjct: 346 LNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVF 405

Query: 308 DSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHS 367
           DS ALFISLAVVVVQTSVVVIE +AK+Q++ +INKLMW+AC+ IS+AF+SL++VVVGE  
Sbjct: 406 DSFALFISLAVVVVQTSVVVIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKE 465

Query: 368 RWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVASDQEIL 427
           + LAV  T IG  IM++T+G+MCY VI +R+E             S+S   S+ SD E+ 
Sbjct: 466 KPLAVGVTAIGALIMVSTLGTMCYWVIANRIEG------------SKSSPASMMSDPELA 513

Query: 428 NSEYKR-MYAL 437
           +S++ R +YA+
Sbjct: 514 DSKHNRKLYAV 524

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score =  343 bits (880), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 182/400 (45%), Positives = 265/400 (66%), Gaps = 10/400 (2%)

Query: 16  VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 75
           ++KELL  +P L    D S ++ L+ AA Q H+++VN +L++D + A I R NGKT LH+
Sbjct: 109 IVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGKTSLHT 168

Query: 76  AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 135
           A R G L +VKAL+ KD +     DKKGQTALHMAVKG++ ++V E+++ D ++L   D 
Sbjct: 169 AGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQADYTILNERDR 228

Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT----ELFSLLK 191
           KGNTALHIA +K R QI   LL+   I+VN++N   E+ +D+A+KL  +    E+   L 
Sbjct: 229 KGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALV 288

Query: 192 EAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGL 251
           EAGA H +  G+   A + LK+ VSDIKH+VQSQL Q+ +T  +V  IAK+L+KLH   +
Sbjct: 289 EAGAKHGRFIGREDEA-RALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREAV 347

Query: 252 NNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLA 311
            N  NS TVVAVL A++AF AIF +PGQY    TEG  +GQA+IA    F +F + ++ +
Sbjct: 348 QNTTNSITVVAVLFASIAFLAIFNLPGQYF---TEGSHVGQANIAGRTGFRVFCLLNATS 404

Query: 312 LFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLA 371
           LFISLAVVVVQ ++V  + +A++++V V+NKLMW AC     AF+++ + VVG+ + W+A
Sbjct: 405 LFISLAVVVVQITLVAWDTRAQKKVVSVVNKLMWAACACTFGAFLAIAFAVVGKGNSWMA 464

Query: 372 VSATVIGGTIMLTTIGSMCYCVILHRMEA--KKLRNIRKA 409
           ++ T++G  I++ T+ SMCY V   R  +     R IR+ 
Sbjct: 465 ITITLLGAPILVGTLASMCYFVFRQRFRSGNDSQRRIRRG 504

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score =  338 bits (866), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 192/426 (45%), Positives = 274/426 (64%), Gaps = 18/426 (4%)

Query: 16  VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 75
           +++ LL     L  T   S +T L +AA +GH +VVN LL    NL +I+R+N K  LH 
Sbjct: 179 IVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHL 238

Query: 76  AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 135
           AAR GH+EV+KAL+SKDP    R DKKGQTALHMAVKGQ+ ++V  L+  DP+++   D 
Sbjct: 239 AARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDK 298

Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE--- 192
             NTALH+A +K R +IV  LLS+   + N+L +  ++ LD+AE L  +E  S +KE   
Sbjct: 299 SCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLA 358

Query: 193 -AGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGL 251
            +GA  + +  +P     +L+ TV+ IK+DV  QL+Q+++T   VH I+K+L+KLH  G+
Sbjct: 359 RSGALRANELNQP---RDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGI 415

Query: 252 NNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLA 311
           NNA NS TVVAVL ATVAFAAIFTVPG    +       G A +   A+F IFF+F++LA
Sbjct: 416 NNATNSVTVVAVLFATVAFAAIFTVPGGDNND-------GSAVVVGRASFKIFFIFNALA 468

Query: 312 LFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLA 371
           LF SLAVVVVQ ++V  E KA++++V VINKLMWLA +  S+AF++ +Y+VVG  + W A
Sbjct: 469 LFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAA 528

Query: 372 VSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVASDQEILNSEY 431
              TV+GG IM   +G+M Y V+    ++K+ R++RK    +R    +     +  NSE 
Sbjct: 529 ELVTVVGGVIMAGVLGTMTYYVV----KSKRTRSMRKKVKSARRSGSNSWHHSDFSNSEV 584

Query: 432 KRMYAL 437
             ++A+
Sbjct: 585 DPIFAI 590

Arabidopsis thaliana (taxid: 3702)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score = 82.4 bits (202), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 90/174 (51%), Gaps = 7/174 (4%)

Query: 22  GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH 81
           G  PN    T+     +LH AA  G++D+   L +  +++     +NG+TVLH A + G+
Sbjct: 628 GANPN---ATNCHGVISLHCAAKNGNLDLAKLLAKNGADV-NAKTDNGETVLHYAVKSGN 683

Query: 82  LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTAL 141
           L +VK L+    +   +TD  G+T LH AV   N D+V  LI     V    DN G TAL
Sbjct: 684 LHLVKWLIENQANIHAKTD-NGETVLHYAVSFNNSDLVYLLIAYGADVNAKTDN-GLTAL 741

Query: 142 HIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           H A+  G   +V  L+S  G DVN+   +GE+ L  A   G+ +L  LL   GA
Sbjct: 742 HYAVYDGNLDLVSLLIS-HGADVNAKTNSGETILYSAVDYGSPDLVYLLIAYGA 794

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q8VHK2|CSKI1_RAT Caskin-1 OS=Rattus norvegicus GN=Caskin1 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/169 (35%), Positives = 85/169 (50%), Gaps = 15/169 (8%)

Query: 39  LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK------- 91
           LH AA  GH DV   LL+  SN   I  N+GKT L  A   G + VV+ L+S        
Sbjct: 119 LHLAAQHGHYDVSEMLLQHQSNPC-IVDNSGKTPLDLACEFGRVGVVQLLLSSNMCAALL 177

Query: 92  DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 151
           +P  G  TD  G + LH+A K  + DI+  L++    + +    K  TALH A   G+T+
Sbjct: 178 EPRPGDTTDPNGTSPLHLAAKNGHIDIIRLLLQAGIDINR--QTKSGTALHEAALCGKTE 235

Query: 152 IVRCLLSIEGIDVNSLNKAGESPLDVAEKL----GNTELFSLLKEAGAA 196
           +VR LL   GI+    N   ++ LD+  +      + E+  LL+EA AA
Sbjct: 236 VVRLLLD-SGINAQVRNTYSQTALDIVHQFTTSQASKEIKQLLREASAA 283

May link the scaffolding protein CASK to downstream intracellular effectors.

Rattus norvegicus (taxid: 10116)

>sp|Q6P9K8|CSKI1_MOUSE Caskin-1 OS=Mus musculus GN=Caskin1 PE=1 SV=2

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 85/169 (50%), Gaps = 15/169 (8%)

Query: 39  LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK------- 91
           LH AA  GH DV   LL+  SN   +  N+GKT L  A   G + VV+ L+S        
Sbjct: 119 LHLAAQHGHYDVSEMLLQHQSNPCMV-DNSGKTPLDLACEFGRVGVVQLLLSSNMCAALL 177

Query: 92  DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 151
           +P  G  TD  G + LH+A K  + DI+  L++    + +    K  TALH A   G+T+
Sbjct: 178 EPRPGDTTDPNGTSPLHLAAKNGHIDIIRLLLQAGIDINR--QTKSGTALHEAALCGKTE 235

Query: 152 IVRCLLSIEGIDVNSLNKAGESPLDVAEKL----GNTELFSLLKEAGAA 196
           +VR LL   GI+    N   ++ LD+  +      + E+  LL+EA AA
Sbjct: 236 VVRLLLD-SGINAQVRNTYSQTALDIVHQFTTSQASKEIKQLLREASAA 283

May link the scaffolding protein CASK to downstream intracellular effectors.

Mus musculus (taxid: 10090)

>sp|Q8WXD9|CSKI1_HUMAN Caskin-1 OS=Homo sapiens GN=CASKIN1 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/169 (34%), Positives = 86/169 (50%), Gaps = 15/169 (8%)

Query: 39  LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK------- 91
           LH AA  GH DV   LL+  SN   +  N+GKT L  A   G + VV+ L+S        
Sbjct: 119 LHLAAQHGHYDVSEMLLQHQSNPCMV-DNSGKTPLDLACEFGRVGVVQLLLSSNMCAALL 177

Query: 92  DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 151
           +P  G  TD  G + LH+A K  + DI+  L++    + +    K  TALH A   G+T+
Sbjct: 178 EPRPGDATDPNGTSPLHLAAKNGHIDIIRLLLQAGIDINR--QTKSGTALHEAALCGKTE 235

Query: 152 IVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT----ELFSLLKEAGAA 196
           +VR LL   GI+ +  N   ++ LD+  +   +    E+  LL+EA AA
Sbjct: 236 VVRLLLD-SGINAHVRNTYSQTALDIVHQFTTSQASREIKQLLREASAA 283

May link the scaffolding protein CASK to downstream intracellular effectors.

Homo sapiens (taxid: 9606)

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/182 (37%), Positives = 92/182 (50%), Gaps = 9/182 (4%)

Query: 28  VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
           V  +D    TALH AA  GH+++VN LL   +N+    + + +  LH AA MGHLEVV  
Sbjct: 133 VNVSDRGGRTALHHAALNGHVEMVNLLLAKGANINAFDKKD-RRALHWAAYMGHLEVVAL 191

Query: 88  LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 147
           L++       + DKKG T LH A      +IV  L+     + ++ +  GNTALHIA   
Sbjct: 192 LINHGAEVTCK-DKKGYTPLHAAASNGQINIVKHLLNLGVEIDEM-NIYGNTALHIACYN 249

Query: 148 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL-FSLLKEAGAA---HSKDHGK 203
           G+  +V  L+   G +VN  N  G +PL  A    +  L   LL   GA     SKD GK
Sbjct: 250 GQDSVVNELIDY-GANVNQPNNNGFTPLHFAAASTHGALCLELLVNNGADVNIQSKD-GK 307

Query: 204 PP 205
            P
Sbjct: 308 SP 309

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 12/172 (6%)

Query: 31  TDLSCS-----TALHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLE 83
           +D SC      T LH AAA GH+DVV +LL    N A+I   N  G T LH A   G   
Sbjct: 197 SDKSCKDKRGYTPLHAAAASGHVDVVKYLLR---NGAEIDEPNAFGNTALHVACYTGQEA 253

Query: 84  VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 143
           V   LV++  +   + + +G T LH+A    N  + LEL+  + + + ++  +G + LH+
Sbjct: 254 VANELVNRGANVN-QPNHRGYTPLHLAAVSTNGALCLELLVNNGADVNMQSKEGKSPLHM 312

Query: 144 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           A   GR    + L+   G +++ +++ G +PL VA K G+  L S L   GA
Sbjct: 313 AAIHGRFTRSQILIQ-NGGEIDCVDRYGNTPLHVAAKYGHELLISTLMTNGA 363

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 4/159 (2%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
           T LH +A +G +DV + LLE  +  + +A   G T LH AA+ G L+V K L+ +  +  
Sbjct: 532 TPLHISAREGQVDVASVLLEAGAAHS-LATKKGFTPLHVAAKYGSLDVAKLLLQRR-AAA 589

Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
               K G T LH+A    N+ + L L+    S      N G T LHIA KK + QI   L
Sbjct: 590 DSAGKNGLTPLHVAAHYDNQKVALLLLEKGASPHATAKN-GYTPLHIAAKKNQMQIASTL 648

Query: 157 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           L+  G + N++ K G +PL +A + G+T++ +LL + GA
Sbjct: 649 LNY-GAETNTVTKQGVTPLHLASQEGHTDMVTLLLDKGA 686

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
356506136	566	PREDICTED: ankyrin repeat-containing pro	0.981	0.757	0.814	0.0
224141131	522	predicted protein [Populus trichocarpa]	0.993	0.831	0.793	0.0
356573310	558	PREDICTED: ankyrin repeat-containing pro	0.981	0.768	0.809	0.0
359478231	595	PREDICTED: ankyrin repeat-containing pro	0.995	0.731	0.793	0.0
296084361	534	unnamed protein product [Vitis vinifera]	0.995	0.814	0.793	0.0
356506142	522	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.981	0.821	0.781	0.0
449444933	574	PREDICTED: ankyrin repeat-containing pro	0.965	0.735	0.782	0.0
15225141	662	ankyrin repeats-containing protein [Arab	0.995	0.657	0.751	0.0
255576418	606	ankyrin repeat-containing protein, putat	0.993	0.716	0.789	0.0
224092832	476	predicted protein [Populus trichocarpa]	0.993	0.911	0.763	0.0

>gi|356506136|ref|XP_003521843.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/436 (81%), Positives = 389/436 (89%), Gaps = 7/436 (1%)

Query: 2   DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 61
           D  H   +Q   + VL+ELL  FPNL MTTDLS STALHTAA QGHIDVV  LLE DSNL
Sbjct: 138 DPFHIAAKQGH-LEVLRELLHSFPNLAMTTDLSNSTALHTAATQGHIDVVKLLLESDSNL 196

Query: 62  AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 121
           AKIARNNGKTVLHSAARMGHLEVVKAL++KDPSTGFRTDKKGQTALHMAVKGQNE+I+LE
Sbjct: 197 AKIARNNGKTVLHSAARMGHLEVVKALLNKDPSTGFRTDKKGQTALHMAVKGQNEEILLE 256

Query: 122 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
           L++PDP+VL LEDNKGNTALHIA KKGRTQ VRCLLS+E I++N+ NKAGE+PLDVAEK 
Sbjct: 257 LVKPDPAVLSLEDNKGNTALHIATKKGRTQNVRCLLSMECININATNKAGETPLDVAEKF 316

Query: 182 GNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAK 241
           G+ EL S+L++AGAA+S D  KPP+ +KQLKQTVSDIKHDVQSQLQQ+RQTG +V KIAK
Sbjct: 317 GSPELVSILRDAGAANSTDQRKPPNPSKQLKQTVSDIKHDVQSQLQQTRQTGMRVQKIAK 376

Query: 242 KLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAF 301
           KLKKLHISGLNNAINS+TVVAVLIATVAFAAIFTVPGQYVE+KT GFSLGQA+IA NAAF
Sbjct: 377 KLKKLHISGLNNAINSATVVAVLIATVAFAAIFTVPGQYVEDKTHGFSLGQANIANNAAF 436

Query: 302 IIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYV 361
           +IFFVFDSLALFISLAVVVVQTSVVVIE+KAK+QLVFVINKLMW+ACLFISIAFISLTYV
Sbjct: 437 LIFFVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFVINKLMWMACLFISIAFISLTYV 496

Query: 362 VVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVA 421
           VVG HSRWLA+ ATVIG  IML+TIGSMCYCVILHRME  KLR      + SRSFSMS A
Sbjct: 497 VVGSHSRWLAIYATVIGSLIMLSTIGSMCYCVILHRMEETKLR------AESRSFSMSHA 550

Query: 422 SDQEILNSEYKRMYAL 437
           SDQEILNSEYKRMYAL
Sbjct: 551 SDQEILNSEYKRMYAL 566

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141131|ref|XP_002323928.1| predicted protein [Populus trichocarpa] gi|222866930|gb|EEF04061.1| predicted protein [Populus trichocarpa]

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/436 (79%), Positives = 394/436 (90%), Gaps = 2/436 (0%)

Query: 2   DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 61
           D  H   +Q   + VL ELL  FPNLVMTTDLSC+TALHTAA QGHIDVVN LLE D NL
Sbjct: 89  DPFHVAAKQGH-LDVLTELLRVFPNLVMTTDLSCTTALHTAATQGHIDVVNLLLETDVNL 147

Query: 62  AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 121
            KIARNNGKTVLHSAARMGHLE+V++L+SKDPSTGFRTDKKGQTALHMAVKGQNE+IVLE
Sbjct: 148 VKIARNNGKTVLHSAARMGHLEIVRSLLSKDPSTGFRTDKKGQTALHMAVKGQNEEIVLE 207

Query: 122 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
           L++PD +V+ +EDNKGNTALHIA+ KGRTQ V CLLS+EGI++N++NKAGE+PLD+AEKL
Sbjct: 208 LLKPDRTVMHVEDNKGNTALHIAVMKGRTQNVHCLLSVEGININAINKAGETPLDIAEKL 267

Query: 182 GNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAK 241
           G  EL S+LK+AGA +SKD GKPP+A KQLKQTVSDIKHDVQSQLQQ+RQTGF+V KIAK
Sbjct: 268 GIQELVSILKKAGANNSKDCGKPPNAAKQLKQTVSDIKHDVQSQLQQTRQTGFRVQKIAK 327

Query: 242 KLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAF 301
           KLKKLHISGLNNAIN+ST+VAVLIATVAFAAIFTVPGQYVEEK EG ++GQA++A+N AF
Sbjct: 328 KLKKLHISGLNNAINNSTIVAVLIATVAFAAIFTVPGQYVEEKIEGAAIGQANVARNPAF 387

Query: 302 IIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYV 361
           ++FFVFDSLALFISLAVVVVQTS+VVIE+KAK+QLVFVINKLMWLACLFIS AFISLTYV
Sbjct: 388 LVFFVFDSLALFISLAVVVVQTSIVVIEQKAKKQLVFVINKLMWLACLFISAAFISLTYV 447

Query: 362 VVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVA 421
           VVG++SRWLA+ ATVIGG IML TIGSMCYCV+LH+ME  KLRNIR+ E+R  S+SMSV 
Sbjct: 448 VVGKNSRWLAIYATVIGGLIMLATIGSMCYCVVLHQMEESKLRNIRR-ETRPGSYSMSVE 506

Query: 422 SDQEILNSEYKRMYAL 437
           SDQEILNSEY+RMYAL
Sbjct: 507 SDQEILNSEYRRMYAL 522

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573310|ref|XP_003554805.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/436 (80%), Positives = 387/436 (88%), Gaps = 7/436 (1%)

Query: 2   DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 61
           D  H   +Q   + VL+ELL  FPNL MTTDLS STALHTAA QGHIDVVN LLE DSNL
Sbjct: 130 DPFHIAAKQGH-LEVLRELLHSFPNLAMTTDLSNSTALHTAATQGHIDVVNLLLESDSNL 188

Query: 62  AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 121
           AKIARNNGKTVLHSAARMGHLEVVKAL++KD STGFRTDKKGQTALHMAVKGQNE+I+LE
Sbjct: 189 AKIARNNGKTVLHSAARMGHLEVVKALLNKDRSTGFRTDKKGQTALHMAVKGQNEEILLE 248

Query: 122 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
           L++PDP+VL LEDNKGNTALHIA KKGRTQ V CLLS+EGI++N+ NKAGE+PLDVAEK 
Sbjct: 249 LVKPDPAVLSLEDNKGNTALHIATKKGRTQNVHCLLSMEGININATNKAGETPLDVAEKF 308

Query: 182 GNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAK 241
           G+ EL S+L++AGAA+S D  KPP+A+KQLKQTVSDIKHDVQSQLQQ+RQTG +V KIAK
Sbjct: 309 GSPELVSILRDAGAANSTDQRKPPNASKQLKQTVSDIKHDVQSQLQQTRQTGMRVQKIAK 368

Query: 242 KLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAF 301
           KLKKLHISGLNNAI S+TVVAVLIATVAFAAIFTVPGQYVE KT GF+LGQA+IA NAAF
Sbjct: 369 KLKKLHISGLNNAITSATVVAVLIATVAFAAIFTVPGQYVEGKTHGFTLGQANIANNAAF 428

Query: 302 IIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYV 361
           +IFFVFDSLALFISLAVVVVQTSVVVIE+KAK+QLVFVINKLMW+ACLFISIAFISLTYV
Sbjct: 429 LIFFVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFVINKLMWMACLFISIAFISLTYV 488

Query: 362 VVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVA 421
           VVG  SRWLA+ ATVIG  IML+TIGSMCYCVILHRME  KLR      + SRSFSMS A
Sbjct: 489 VVGSQSRWLAIYATVIGSLIMLSTIGSMCYCVILHRMEETKLR------AESRSFSMSHA 542

Query: 422 SDQEILNSEYKRMYAL 437
           SDQEILNSEYKRMYAL
Sbjct: 543 SDQEILNSEYKRMYAL 558

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478231|ref|XP_002279889.2| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/436 (79%), Positives = 387/436 (88%), Gaps = 1/436 (0%)

Query: 2   DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 61
           D  H   +Q   + VLKELL  FPNLVMTTD S STALHTAAAQGHIDVV+ LLE D NL
Sbjct: 161 DPFHVATKQGH-LEVLKELLRFFPNLVMTTDSSNSTALHTAAAQGHIDVVHLLLETDPNL 219

Query: 62  AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 121
           AKIARNNGKTVLHSAARMGHLEV+KALVSKDPS  FRTDKKGQTALHMAVKGQN +IV  
Sbjct: 220 AKIARNNGKTVLHSAARMGHLEVLKALVSKDPSIVFRTDKKGQTALHMAVKGQNVEIVHA 279

Query: 122 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
           L++PDPSV+ LEDNKGNTALHIA +KGR+Q V+CLLS+EGI +N+ NKAGE+PLD+AEK 
Sbjct: 280 LLKPDPSVMSLEDNKGNTALHIATRKGRSQFVQCLLSVEGIKMNATNKAGETPLDIAEKF 339

Query: 182 GNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAK 241
           G  E+ S+L+EAGA +S DHGKPP+A KQLKQTVSDIKHDVQSQLQQ+RQTG +V  IAK
Sbjct: 340 GTQEIASILREAGATNSADHGKPPNAAKQLKQTVSDIKHDVQSQLQQTRQTGVRVQHIAK 399

Query: 242 KLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAF 301
           +LKKLHISGLNNAINS+TVVAVLIATVAFAAIFTVPGQYVE  T+G SLGQAHIA+ AAF
Sbjct: 400 RLKKLHISGLNNAINSATVVAVLIATVAFAAIFTVPGQYVEVPTKGASLGQAHIARTAAF 459

Query: 302 IIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYV 361
           +IFFVFDSLALFISLAVVVVQTSVVVIE+KAK+QLVFVINKLMW+ACLFISIAFISLTYV
Sbjct: 460 LIFFVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFVINKLMWMACLFISIAFISLTYV 519

Query: 362 VVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVA 421
           VVG H+RWLAV ATVIG  IMLTTIG+MCYCVI++R+   K RNIRKAESRSRSFS+S+A
Sbjct: 520 VVGSHARWLAVCATVIGSVIMLTTIGAMCYCVIVNRIAEAKKRNIRKAESRSRSFSVSMA 579

Query: 422 SDQEILNSEYKRMYAL 437
           S+ E+LNSEY+RMYAL
Sbjct: 580 SESELLNSEYRRMYAL 595

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084361|emb|CBI24749.3| unnamed protein product [Vitis vinifera]

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/436 (79%), Positives = 387/436 (88%), Gaps = 1/436 (0%)

Query: 2   DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 61
           D  H   +Q   + VLKELL  FPNLVMTTD S STALHTAAAQGHIDVV+ LLE D NL
Sbjct: 100 DPFHVATKQGH-LEVLKELLRFFPNLVMTTDSSNSTALHTAAAQGHIDVVHLLLETDPNL 158

Query: 62  AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 121
           AKIARNNGKTVLHSAARMGHLEV+KALVSKDPS  FRTDKKGQTALHMAVKGQN +IV  
Sbjct: 159 AKIARNNGKTVLHSAARMGHLEVLKALVSKDPSIVFRTDKKGQTALHMAVKGQNVEIVHA 218

Query: 122 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
           L++PDPSV+ LEDNKGNTALHIA +KGR+Q V+CLLS+EGI +N+ NKAGE+PLD+AEK 
Sbjct: 219 LLKPDPSVMSLEDNKGNTALHIATRKGRSQFVQCLLSVEGIKMNATNKAGETPLDIAEKF 278

Query: 182 GNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAK 241
           G  E+ S+L+EAGA +S DHGKPP+A KQLKQTVSDIKHDVQSQLQQ+RQTG +V  IAK
Sbjct: 279 GTQEIASILREAGATNSADHGKPPNAAKQLKQTVSDIKHDVQSQLQQTRQTGVRVQHIAK 338

Query: 242 KLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAF 301
           +LKKLHISGLNNAINS+TVVAVLIATVAFAAIFTVPGQYVE  T+G SLGQAHIA+ AAF
Sbjct: 339 RLKKLHISGLNNAINSATVVAVLIATVAFAAIFTVPGQYVEVPTKGASLGQAHIARTAAF 398

Query: 302 IIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYV 361
           +IFFVFDSLALFISLAVVVVQTSVVVIE+KAK+QLVFVINKLMW+ACLFISIAFISLTYV
Sbjct: 399 LIFFVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFVINKLMWMACLFISIAFISLTYV 458

Query: 362 VVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVA 421
           VVG H+RWLAV ATVIG  IMLTTIG+MCYCVI++R+   K RNIRKAESRSRSFS+S+A
Sbjct: 459 VVGSHARWLAVCATVIGSVIMLTTIGAMCYCVIVNRIAEAKKRNIRKAESRSRSFSVSMA 518

Query: 422 SDQEILNSEYKRMYAL 437
           S+ E+LNSEY+RMYAL
Sbjct: 519 SESELLNSEYRRMYAL 534

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506142|ref|XP_003521846.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At5g02620-like, partial [Glycine max]

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/444 (78%), Positives = 382/444 (86%), Gaps = 15/444 (3%)

Query: 2   DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 61
           D  H   +Q   + VL+ELL  FPNL MTTDLS STALHTAA QGHIDVVN LLE DSNL
Sbjct: 86  DPFHIAAKQGH-LEVLRELLHSFPNLAMTTDLSNSTALHTAATQGHIDVVNLLLESDSNL 144

Query: 62  AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 121
           AKIARNNGKTVLHSAARMGHLEVVKAL++KD STGFRTDKKGQTALHMAVKGQNE+I++E
Sbjct: 145 AKIARNNGKTVLHSAARMGHLEVVKALLNKDXSTGFRTDKKGQTALHMAVKGQNEEILME 204

Query: 122 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
           L++PDP+VL LEDNKGNTALHIA KKGRTQ VRCLLS+EGI++N+ NKAGE+PLD  +K 
Sbjct: 205 LVKPDPAVLSLEDNKGNTALHIATKKGRTQNVRCLLSMEGININATNKAGETPLDKKKKT 264

Query: 182 ---GNTELF-----SLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTG 233
              G T        S+L++AGAA+S D  KPP+A+KQLKQTVSDIKHDVQSQLQQ+RQ G
Sbjct: 265 SHQGTTLPLHQGSPSVLRDAGAANSTDQRKPPNASKQLKQTVSDIKHDVQSQLQQTRQNG 324

Query: 234 FKVHKIAKKLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQA 293
            +V KIAKKLKKLHISGLNN I S+TVVAVLIATVAFAAIFTVPGQYVE KT GFSLGQA
Sbjct: 325 MRVQKIAKKLKKLHISGLNNVITSATVVAVLIATVAFAAIFTVPGQYVEGKTHGFSLGQA 384

Query: 294 HIAKNAAFIIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISI 353
           +IA NAAF+IFFVFDS+ALFISLAVVVVQTSVVVIE+K K+QLVFVINKLMW+ACLFISI
Sbjct: 385 NIANNAAFLIFFVFDSMALFISLAVVVVQTSVVVIEQKTKKQLVFVINKLMWMACLFISI 444

Query: 354 AFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRS 413
           AFISLTYVVVG HSRWLA+ ATVIG  IML+TIGSMCYCVILHRME  KLR      + S
Sbjct: 445 AFISLTYVVVGSHSRWLAIYATVIGSLIMLSTIGSMCYCVILHRMEETKLR------AES 498

Query: 414 RSFSMSVASDQEILNSEYKRMYAL 437
           RSFSMS ASDQEILNSEYKRMYAL
Sbjct: 499 RSFSMSHASDQEILNSEYKRMYAL 522

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444933|ref|XP_004140228.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus] gi|449490552|ref|XP_004158638.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus]

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/423 (78%), Positives = 377/423 (89%), Gaps = 1/423 (0%)

Query: 16  VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 75
           VL+ELL   PNL MTTD   STALHTAA QGHIDVVN LLE DS L+KIARNNGKTVLHS
Sbjct: 152 VLQELLDVHPNLAMTTDSVNSTALHTAAMQGHIDVVNLLLETDSELSKIARNNGKTVLHS 211

Query: 76  AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 135
           AARMGH+EVVK LVSKDP+ GFRTDKKGQT LHMAVKGQN+ IV+EL+ PDPSVL LEDN
Sbjct: 212 AARMGHVEVVKLLVSKDPTLGFRTDKKGQTPLHMAVKGQNDSIVMELLSPDPSVLTLEDN 271

Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           KGNTALHIA+ K RT+ VR LLS+ GI++N++NK GE+PLD+AEK G++EL ++LKEAGA
Sbjct: 272 KGNTALHIAVLKRRTENVRRLLSVNGININAINKNGETPLDIAEKFGSSELVNILKEAGA 331

Query: 196 AHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKLHISGLNNAI 255
             SKD GKPPSA KQLKQTVSDIKHDV+SQLQQ+RQTGF+V +IAK+LKKLHISGLNNAI
Sbjct: 332 VISKDQGKPPSAAKQLKQTVSDIKHDVESQLQQTRQTGFRVQRIAKRLKKLHISGLNNAI 391

Query: 256 NSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFIS 315
           NS+TVVAVLIATVAFAAIFTVPGQ+VE+K+   +LGQAHIA NAAFIIF V DS+ALFIS
Sbjct: 392 NSATVVAVLIATVAFAAIFTVPGQFVEQKSNDETLGQAHIATNAAFIIFMVSDSMALFIS 451

Query: 316 LAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLAVSAT 375
           LAVVVVQTSVVVIE+KAKRQLVFVINKLMWLACLFIS+AFIS+TYVVVG + +WLA+ AT
Sbjct: 452 LAVVVVQTSVVVIEQKAKRQLVFVINKLMWLACLFISVAFISITYVVVGSNHKWLAICAT 511

Query: 376 VIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMS-VASDQEILNSEYKRM 434
           VIG TIMLTTIGSMCYCV+ HRME  K+R+I++ ESRSRS+SMS VAS+ E+LN+EYKRM
Sbjct: 512 VIGSTIMLTTIGSMCYCVVQHRMEESKMRSIKRGESRSRSYSMSVVASESELLNNEYKRM 571

Query: 435 YAL 437
           YAL
Sbjct: 572 YAL 574

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225141|ref|NP_180741.1| ankyrin repeats-containing protein [Arabidopsis thaliana] gi|4887754|gb|AAD32290.1| ankyrin-like protein [Arabidopsis thaliana] gi|330253495|gb|AEC08589.1| ankyrin repeats-containing protein [Arabidopsis thaliana]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/438 (75%), Positives = 381/438 (86%), Gaps = 3/438 (0%)

Query: 2   DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 61
           D  H   +Q   + VLK LL  FPNL MTTDLSC+TALHTAA QGHIDVVN LLE DSNL
Sbjct: 226 DPFHVAAKQGH-LEVLKILLETFPNLAMTTDLSCTTALHTAATQGHIDVVNLLLETDSNL 284

Query: 62  AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 121
           AKIA+NNGKT LHSAARMGH+EVVK+L+ KDPS GFRTDKKGQTALHMAVKGQN+ IV+E
Sbjct: 285 AKIAKNNGKTALHSAARMGHVEVVKSLIGKDPSIGFRTDKKGQTALHMAVKGQNDGIVVE 344

Query: 122 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
           L++PD +VL +EDNKGNT LHIA  KGR +IVRCL+S EGI++N +NKAG++PLDV+EK+
Sbjct: 345 LVKPDVAVLSVEDNKGNTPLHIATNKGRIKIVRCLVSFEGINLNPINKAGDTPLDVSEKI 404

Query: 182 GNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAK 241
           GN EL S+LKEAGAA +KD GKP +  KQLKQTVSDIKH+VQSQLQQSRQTG +V KIAK
Sbjct: 405 GNAELVSVLKEAGAATAKDLGKPQNPAKQLKQTVSDIKHEVQSQLQQSRQTGVRVQKIAK 464

Query: 242 KLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAF 301
           +LKKLHISGLNNAINS+TVVAVLIATVAFAAIFT+PGQY E++++G  LGQAHIA  A F
Sbjct: 465 RLKKLHISGLNNAINSATVVAVLIATVAFAAIFTIPGQYEEDRSKGELLGQAHIANKAPF 524

Query: 302 IIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYV 361
           ++FF+FDSLALFISLAVVVVQTSVVVIE+KAK++LVFVINKLMW ACLFISIAF+SL+Y+
Sbjct: 525 LVFFIFDSLALFISLAVVVVQTSVVVIEQKAKKKLVFVINKLMWCACLFISIAFVSLSYI 584

Query: 362 VVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMS-V 420
           VVG+   WLAV ATVIGGTIMLTTIG+MCYCV++HRME  KLR+IRK  S+S+SFSMS +
Sbjct: 585 VVGKEEMWLAVCATVIGGTIMLTTIGAMCYCVVMHRMEESKLRSIRKERSKSQSFSMSRM 644

Query: 421 ASDQEILNSEY-KRMYAL 437
            SD +ILN EY KRMYAL
Sbjct: 645 PSDSDILNGEYNKRMYAL 662

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576418|ref|XP_002529101.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223531452|gb|EEF33285.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/437 (78%), Positives = 385/437 (88%), Gaps = 3/437 (0%)

Query: 2   DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 61
           D  H   +Q   + VL  LL  FPNL MTTDLSC+TALHTAA QGHIDVVN LLE DSNL
Sbjct: 172 DPFHIAAKQGH-LEVLNALLHVFPNLAMTTDLSCTTALHTAATQGHIDVVNLLLETDSNL 230

Query: 62  AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 121
           AKIARNNGKT LHSAARMGH+EVV++L+SKDPSTG RTDKKGQTALHMAVKGQNE+IVLE
Sbjct: 231 AKIARNNGKTALHSAARMGHVEVVRSLLSKDPSTGLRTDKKGQTALHMAVKGQNEEIVLE 290

Query: 122 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
           L++PDP+ + LEDNKGNTALHIA KKGRTQ VRCLLS+EGI+VN++NKAGE+ LD+AEKL
Sbjct: 291 LLKPDPAFMSLEDNKGNTALHIATKKGRTQNVRCLLSVEGINVNAINKAGETSLDIAEKL 350

Query: 182 GNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAK 241
           G+ EL S+LKEA A +SKD GKP +  KQLKQTVSDIKHDVQSQLQQ+RQTGFKV KIAK
Sbjct: 351 GSPELVSILKEARALNSKDLGKPQNPAKQLKQTVSDIKHDVQSQLQQTRQTGFKVQKIAK 410

Query: 242 KLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAF 301
           +L+KLHISGLNNAINS+TVVAVLIATVAFAAIFTVPGQY+E+K +G SLGQAHIA N AF
Sbjct: 411 RLQKLHISGLNNAINSATVVAVLIATVAFAAIFTVPGQYIEDKEKGTSLGQAHIADNPAF 470

Query: 302 IIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYV 361
           +IFFVFDSLALFISLAVVVVQTSVVVIE+KAK+QLVF INKLMWLACLFISIAFISLTYV
Sbjct: 471 LIFFVFDSLALFISLAVVVVQTSVVVIEQKAKKQLVFFINKLMWLACLFISIAFISLTYV 530

Query: 362 VVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVA 421
           VVGE  RWLA+ ATVIGG+IMLTTIGSMCYCVILHRME +      + ESRSRS+SMS+ 
Sbjct: 531 VVGEKYRWLAIYATVIGGSIMLTTIGSMCYCVILHRME-ESRLRSIRRESRSRSYSMSMV 589

Query: 422 SDQEILNSEY-KRMYAL 437
           S+QEI +SEY KRMYAL
Sbjct: 590 SEQEIFDSEYNKRMYAL 606

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092832|ref|XP_002309714.1| predicted protein [Populus trichocarpa] gi|222852617|gb|EEE90164.1| predicted protein [Populus trichocarpa]

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/436 (76%), Positives = 380/436 (87%), Gaps = 2/436 (0%)

Query: 2   DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 61
           D  H   +Q   + VL++LLG FPNL MTTD SC+TALHTAA QGHIDVVN LLE D+NL
Sbjct: 43  DPFHVAAKQGH-LDVLRKLLGVFPNLAMTTDSSCTTALHTAATQGHIDVVNLLLETDANL 101

Query: 62  AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 121
            KIARNNGKTVLHSAARMGHLEVV++L+ KD STGFRTDKKGQTALHMAVKGQNE+IVLE
Sbjct: 102 VKIARNNGKTVLHSAARMGHLEVVRSLLIKDSSTGFRTDKKGQTALHMAVKGQNEEIVLE 161

Query: 122 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
           L++PDPSV+ +EDNKGNTALH+AIKKGR Q VRCLLS+EG+++N++NKAGE+PLD+AEKL
Sbjct: 162 LLKPDPSVMHVEDNKGNTALHVAIKKGRAQNVRCLLSVEGVNINAINKAGETPLDIAEKL 221

Query: 182 GNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFKVHKIAK 241
           G  +L  +LKEAGA +SKD GKPPS+ KQLKQTVS IKHDVQSQLQQ+RQTGFKV KIAK
Sbjct: 222 GVQDLVYILKEAGANNSKDCGKPPSSAKQLKQTVSAIKHDVQSQLQQTRQTGFKVQKIAK 281

Query: 242 KLKKLHISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAF 301
           KLKKLHISGLNNAIN++T+VAVLIATVAFAAIFTVPGQYVEEKT+G ++GQAH+A+N AF
Sbjct: 282 KLKKLHISGLNNAINNATIVAVLIATVAFAAIFTVPGQYVEEKTDGAAIGQAHVARNPAF 341

Query: 302 IIFFVFDSLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYV 361
           ++F +FDSLALFISLAVVVVQTSVVVIE+K K+QLVF+INKLMWLACLFIS AFISLTYV
Sbjct: 342 LVFIIFDSLALFISLAVVVVQTSVVVIEQKGKKQLVFIINKLMWLACLFISAAFISLTYV 401

Query: 362 VVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAESRSRSFSMSVA 421
           VVG+  RWLA+ ATV+GG IML TIGSMCY VILHRME   LRNIR+          + A
Sbjct: 402 VVGKKFRWLAIYATVLGGIIMLATIGSMCYFVILHRMEESTLRNIRRESRSRSYSMSA-A 460

Query: 422 SDQEILNSEYKRMYAL 437
           SDQEILNSE KRMYAL
Sbjct: 461 SDQEILNSECKRMYAL 476

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	437
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.995	0.657	0.684	1.3e-153
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.995	0.693	0.642	3.2e-145
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.993	0.799	0.532	8.2e-115
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.915	0.763	0.484	7e-93
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.956	0.785	0.399	4.3e-77
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.963	0.713	0.411	3.5e-75
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.901	0.649	0.426	5.9e-73
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.887	0.648	0.284	4.7e-34
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.874	0.635	0.242	1.1e-22
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.828	0.631	0.255	2.9e-21

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 1498 (532.4 bits), Expect = 1.3e-153, P = 1.3e-153
 Identities = 300/438 (68%), Positives = 347/438 (79%)

Query:     2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 61
             D  H   +Q   + VLK LL  FPNL MTTDLSC+TALHTAA QGHIDVVN LLE DSNL
Sbjct:   226 DPFHVAAKQGH-LEVLKILLETFPNLAMTTDLSCTTALHTAATQGHIDVVNLLLETDSNL 284

Query:    62 AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 121
             AKIA+NNGKT LHSAARMGH+EVVK+L+ KDPS GFRTDKKGQTALHMAVKGQN+ IV+E
Sbjct:   285 AKIAKNNGKTALHSAARMGHVEVVKSLIGKDPSIGFRTDKKGQTALHMAVKGQNDGIVVE 344

Query:   122 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
             L++PD +VL +EDNKGNT LHIA  KGR +IVRCL+S EGI++N +NKAG++PLDV+EK+
Sbjct:   345 LVKPDVAVLSVEDNKGNTPLHIATNKGRIKIVRCLVSFEGINLNPINKAGDTPLDVSEKI 404

Query:   182 GNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFXXXXXXX 241
             GN EL S+LKEAGAA +KD GKP +  KQLKQTVSDIKH+VQSQLQQSRQTG        
Sbjct:   405 GNAELVSVLKEAGAATAKDLGKPQNPAKQLKQTVSDIKHEVQSQLQQSRQTGVRVQKIAK 464

Query:   242 XXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAF 301
                    SGLNNAINS+TVVAVLIATVAFAAIFT+PGQY E++++G  LGQAHIA  A F
Sbjct:   465 RLKKLHISGLNNAINSATVVAVLIATVAFAAIFTIPGQYEEDRSKGELLGQAHIANKAPF 524

Query:   302 IIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWLACLFISIAFISLTYV 361
             ++FF+FDSLALFISLA          IE+KAK++LVFVINKLMW ACLFISIAF+SL+Y+
Sbjct:   525 LVFFIFDSLALFISLAVVVVQTSVVVIEQKAKKKLVFVINKLMWCACLFISIAFVSLSYI 584

Query:   362 VVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAEXXXXXXXXXXX 421
             VVG+   WLAV ATVIGGTIMLTTIG+MCYCV++HRME  KLR+IRK             
Sbjct:   585 VVGKEEMWLAVCATVIGGTIMLTTIGAMCYCVVMHRMEESKLRSIRKERSKSQSFSMSRM 644

Query:   422 -XDQEILNSEY-KRMYAL 437
               D +ILN EY KRMYAL
Sbjct:   645 PSDSDILNGEYNKRMYAL 662

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 1419 (504.6 bits), Expect = 3.2e-145, P = 3.2e-145
 Identities = 282/439 (64%), Positives = 341/439 (77%)

Query:     2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 61
             D  H   +Q   I  LK+LL  FPNL MT DLSC+TALHTAA+QGH DVVN LL+ DS+L
Sbjct:   190 DPFHVAAKQGH-IEALKKLLETFPNLAMTVDLSCTTALHTAASQGHTDVVNLLLKTDSHL 248

Query:    62 AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 121
             AKIA+NNGKT LHSAARMGH EVVK+L+  D S GFRTDKKGQTALHMAVKGQNE IVLE
Sbjct:   249 AKIAKNNGKTALHSAARMGHREVVKSLIGNDASIGFRTDKKGQTALHMAVKGQNEGIVLE 308

Query:   122 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
             L++PDP++L +ED+KGNT LH A  KGR +IVRCL+S +GI++N++NKAG++ LD+AEK+
Sbjct:   309 LVKPDPAILSVEDSKGNTPLHTATNKGRIKIVRCLVSFDGINLNAMNKAGDTALDIAEKI 368

Query:   182 GNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFXXXXXXX 241
             GN EL S+LKEAGAA +KD GKP +  KQL QTVSDIKH+VQSQLQQSRQTG        
Sbjct:   369 GNPELVSVLKEAGAATAKDLGKPRNPAKQLNQTVSDIKHEVQSQLQQSRQTGVRVRRIAK 428

Query:   242 XXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSL-GQAHIAKNAA 300
                    +GLNNAINS+TVVAVLIATVAFAAIFT+PGQY E++T+G  L G+A IA  A 
Sbjct:   429 RLKKLHINGLNNAINSATVVAVLIATVAFAAIFTIPGQYEEDRTKGLLLLGEARIAGKAP 488

Query:   301 FIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWLACLFISIAFISLTY 360
             F++FF+FDSLALFISLA          IE+KAK+ LVFVINKLMWLACLFIS+AF+SL++
Sbjct:   489 FLVFFIFDSLALFISLAVVVVQTSVVVIEQKAKKNLVFVINKLMWLACLFISVAFVSLSF 548

Query:   361 VVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAEXXXXXXXXXX 420
             +VVG+   WLA+ AT+IGGTIMLTTIG+MCYCV++HR+E  KL+++RK            
Sbjct:   549 IVVGKEDIWLAICATIIGGTIMLTTIGAMCYCVVMHRIEESKLKSLRKERSKSKSFSLSH 608

Query:   421 X-XDQEILNSEY-KRMYAL 437
                + EILN E+ KRMYAL
Sbjct:   609 MPSESEILNGEFNKRMYAL 627

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
 Identities = 236/443 (53%), Positives = 310/443 (69%)

Query:     2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 61
             D  H   +Q  +  VLK L      L MT DLS +TALHTAA QGH +VVNFLLE+ S+L
Sbjct:   103 DAFHIAAKQGDLD-VLKVLAEAHSELAMTVDLSNTTALHTAATQGHTEVVNFLLELGSSL 161

Query:    62 AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 121
             A IA++NGKT LHSA+R GH++V+KAL++ +P+   R DKKGQTALHMAVKG N ++V E
Sbjct:   162 AGIAKSNGKTALHSASRNGHVKVIKALLASEPAIAIRMDKKGQTALHMAVKGTNVEVVEE 221

Query:   122 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
             LI+ D S + + D KGNTALHIA +KGR+QIV+ LL+    D  ++N++GE+ LD AEK+
Sbjct:   222 LIKADRSSINIADTKGNTALHIAARKGRSQIVKLLLANNMTDTKAVNRSGETALDTAEKI 281

Query:   182 GNTELFSLLKEAGAAHSKDHGKP--PSATKQLKQTVSDIKHDVQSQLQQSRQTGFXXXXX 239
             GN E+  +L++ G   +K   KP  P+  ++LKQTVSDIKH+V +QL+ +R T       
Sbjct:   282 GNPEVALILQKHGVPSAKTI-KPSGPNPARELKQTVSDIKHEVHNQLEHTRLTRKRVQGI 340

Query:   240 XXXXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKT---EGFSLGQAHIA 296
                       GLNNAINS+TVVAVLIATVAFAAIFTVPGQYVE+ +   +G SLG+A+IA
Sbjct:   341 AKQLNKMHTEGLNNAINSTTVVAVLIATVAFAAIFTVPGQYVEDTSKIPDGHSLGEANIA 400

Query:   297 KNAAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWLACLFISIAFI 356
                 FIIFF+FDS+ALFISLA          IE KAK+Q++ VINKLMWLAC+ IS+AF+
Sbjct:   401 STTPFIIFFIFDSIALFISLAVVVVQTSVVVIESKAKKQMMAVINKLMWLACVLISVAFL 460

Query:   357 SLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAEXXXXXX 416
             +L++VVVGE  +WLA+  T IG TIM+TT+G+MCY +I H++EA  LRNIR++       
Sbjct:   461 ALSFVVVGEEEKWLAIWVTAIGATIMITTLGTMCYWIIQHKIEAANLRNIRRSSINSISG 520

Query:   417 XXXX--XXDQEILNSEYKRMYAL 437
                     D +IL +E K+MYA+
Sbjct:   521 SWGIPQLTDSDILQNECKKMYAI 543

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 925 (330.7 bits), Expect = 7.0e-93, P = 7.0e-93
 Identities = 198/409 (48%), Positives = 271/409 (66%)

Query:     2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 61
             D  H   +    + VL  L+   P L  T D S +TALHTAA+QGH ++V FLL+   +L
Sbjct:    93 DAFHIAAKNGN-LQVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDL 151

Query:    62 AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 121
             A IAR+NGKT LHSAAR GH  +VK L+ K      R DKKGQTALHMAVKGQN +IV  
Sbjct:   152 AAIARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDV 211

Query:   122 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
             L+  D S++   DNKGNT LHIA++K R +IV+ +L    +   ++NK+GE+ LD+AEK 
Sbjct:   212 LMEADGSLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKT 271

Query:   182 GNTELFSLLKEAGAAHSK-----DHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFXX 236
             G  E+  LL++ G  +++     +  +P  ++++LK+TVS+I H+V +QL+Q+ +T    
Sbjct:   272 GLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREI 331

Query:   237 XXXXXXXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTE---GFSLGQA 293
                          GLNNAINS+T+VA+LIATVAFAAIF VPGQY ++  +   G+SLG+A
Sbjct:   332 QGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEA 391

Query:   294 HIAKNAAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWLACLFISI 353
               A    F+IF VFDS ALFISLA          IE +AK+Q++ +INKLMW+AC+ IS+
Sbjct:   392 RAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVVIERRAKKQMMAIINKLMWMACIMISV 451

Query:   354 AFISLTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKK 402
             AF+SL++VVVGE  + LAV  T IG  IM++T+G+MCY VI +R+E  K
Sbjct:   452 AFVSLSFVVVGEKEKPLAVGVTAIGALIMVSTLGTMCYWVIANRIEGSK 500

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 171/428 (39%), Positives = 254/428 (59%)

Query:    16 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 75
             ++KELL  +P L    D S ++ L+ AA Q H+++VN +L++D + A I R NGKT LH+
Sbjct:   109 IVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGKTSLHT 168

Query:    76 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 135
             A R G L +VKAL+ KD +     DKKGQTALHMAVKG++ ++V E+++ D ++L   D 
Sbjct:   169 AGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQADYTILNERDR 228

Query:   136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE----LFSLLK 191
             KGNTALHIA +K R QI   LL+   I+VN++N   E+ +D+A+KL  +E    +   L 
Sbjct:   229 KGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALV 288

Query:   192 EAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFXXXXXXXXXXXXXXSGL 251
             EAGA H +  G+   A + LK+ VSDIKH+VQSQL Q+ +T                  +
Sbjct:   289 EAGAKHGRFIGREDEA-RALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREAV 347

Query:   252 NNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLA 311
              N  NS TVVAVL A++AF AIF +PGQY    TEG  +GQA+IA    F +F + ++ +
Sbjct:   348 QNTTNSITVVAVLFASIAFLAIFNLPGQYF---TEGSHVGQANIAGRTGFRVFCLLNATS 404

Query:   312 LFISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVGEHSRWLA 371
             LFISLA           + +A++++V V+NKLMW AC     AF+++ + VVG+ + W+A
Sbjct:   405 LFISLAVVVVQITLVAWDTRAQKKVVSVVNKLMWAACACTFGAFLAIAFAVVGKGNSWMA 464

Query:   372 VSATVIGGTIMLTTIGSMCYCVILHRMEA--KKLRNIRKAEXXXXXXXXXXXXDQEILNS 429
             ++ T++G  I++ T+ SMCY V   R  +     R IR+                    S
Sbjct:   465 ITITLLGAPILVGTLASMCYFVFRQRFRSGNDSQRRIRRGSSKSFSWSYSHHVSDFEDES 524

Query:   430 EYKRMYAL 437
             +++++ AL
Sbjct:   525 DFEKIIAL 532

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 181/440 (41%), Positives = 257/440 (58%)

Query:     2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 61
             D +H    Q    +V + LL     L  T   S +T L +AA +GH +VVN LL    NL
Sbjct:   166 DPLHIAAIQGHHAIV-EVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNL 224

Query:    62 AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 121
              +I+R+N K  LH AAR GH+EV+KAL+SKDP    R DKKGQTALHMAVKGQ+ ++V  
Sbjct:   225 LEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKL 284

Query:   122 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
             L+  DP+++   D   NTALH+A +K R +IV  LLS+   + N+L +  ++ LD+AE L
Sbjct:   285 LLDADPAIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGL 344

Query:   182 GNTELFSLLKE----AGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFXXX 237
               +E  S +KE    +GA  + +  +P     +L+ TV+ IK+DV  QL+Q+++T     
Sbjct:   345 PLSEESSYIKECLARSGALRANELNQPRD---ELRSTVTQIKNDVHIQLEQTKRTNKNVH 401

Query:   238 XXXXXXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAK 297
                         G+NNA NS TVVAVL ATVAFAAIFTVPG    +  +G     A +  
Sbjct:   402 NISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGG---DNNDG----SAVVVG 454

Query:   298 NAAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWLACLFISIAFIS 357
              A+F IFF+F++LALF SLA           E KA++++V VINKLMWLA +  S+AF++
Sbjct:   455 RASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLA 514

Query:   358 LTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAEXXXXXXX 417
              +Y+VVG  + W A   TV+GG IM   +G+M Y V+    ++K+ R++RK         
Sbjct:   515 SSYIVVGRKNEWAAELVTVVGGVIMAGVLGTMTYYVV----KSKRTRSMRKKVKSARRSG 570

Query:   418 XXXXXDQEILNSEYKRMYAL 437
                    +  NSE   ++A+
Sbjct:   571 SNSWHHSDFSNSEVDPIFAI 590

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 176/413 (42%), Positives = 250/413 (60%)

Query:     2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 61
             D +H    Q    +V + LL   P L  T   S +T L +AA +GH +VVN LL  DS+L
Sbjct:   180 DALHIACSQGHRSIV-QLLLEHEPQLSKTVAQSNATPLVSAATRGHSEVVNELLAKDSSL 238

Query:    62 AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLE 121
              +I+R+NGK  LH AAR GH+++V+ L+ KDP    RTDKKGQT+LHMAVKG +  +V  
Sbjct:   239 LEISRSNGKNALHLAARQGHVDIVRTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQVVRL 298

Query:   122 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
             L+R DP+++ L D  GNT LHIA +K R +IV  LL +   +VN+L +  ++  D+AE L
Sbjct:   299 LLRADPAIVMLPDKFGNTVLHIATRKKRAEIVNELLQLPDTNVNALTRDHKTAYDIAEGL 358

Query:   182 GNTELFSLLKE----AGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFXXX 237
              ++E  + +KE     GA  + +  +P     +L++TV++IK DV +QL+Q+R+T     
Sbjct:   359 THSEETAEIKEILSRCGALKANELNQPRD---ELRKTVTEIKKDVHTQLEQTRKTNKNVD 415

Query:   238 XXXXXXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAK 297
                        +G+NNA NS TVVAVL ATVAFAAIFTVPG    +   G ++   H   
Sbjct:   416 GIAKELRKLHRAGINNATNSVTVVAVLFATVAFAAIFTVPGG---DDDHGVAV-MVHAT- 470

Query:   298 NAAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWLACLFISIAFIS 357
               +F IFF+F+++ALF SLA           E K +R++V VINKLMWLA +  ++AFIS
Sbjct:   471 --SFKIFFIFNAIALFTSLAVVVVQITLVRGETKTERRVVEVINKLMWLASVCTTVAFIS 528

Query:   358 LTYVVVGEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLRNIRKAE 410
              +Y+VVG  +R+ AV  TVIG   M   +  M Y V+    ++K+ R +RK E
Sbjct:   529 SSYIVVGRRNRYAAVVVTVIGTVTMTGILSIMTYYVV----KSKRTRIVRKKE 577

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 4.7e-34, P = 4.7e-34
 Identities = 116/408 (28%), Positives = 192/408 (47%)

Query:     9 QQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN--LAKIAR 66
             +Q +VI+    +L +FPNL++  D   ST LH A   G++++   LL++D N  +A+   
Sbjct:   173 EQQQVII--DSILEKFPNLILDADEEQSTLLHKACKSGNLEMARTLLDVDVNQEIAEKVD 230

Query:    67 NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKG--QTALHMAVKGQNEDIVLELIR 124
              +G T LH A   G +E++K  + K PS+ F    +G  +T  H+A K Q     + + +
Sbjct:   231 KDGLTPLHRAVINGSVEILKEFLCKAPSS-FNITTQGTIETVFHLAAKYQKTKAFIFMAQ 289

Query:   125 PDP--SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 182
                   +L   D + NT LH+A     T +VR +LS   IDV   NK G + +D+ +K G
Sbjct:   290 SANIRQLLYSLDAEDNTVLHVAASVDSTSLVRHILSETTIDVTLKNKKGFAAVDLIDKEG 349

Query:   183 NTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFXXXXXXXX 242
                 F LL       ++   +P    K   + V  I++    +   S             
Sbjct:   350 VD--FPLLSLWFRDEAEKIQRPARYVKFAHEPVELIRNTNNGEKLSSESRAMDLLREGRD 407

Query:   243 ----XXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKN 298
                         L NA N+ T+VAVLIA+VAF      PG  V +  +G  +G+A   + 
Sbjct:   408 PRNKEREMHSESLQNARNTITIVAVLIASVAFTCGINPPGG-VHQ--DGPFIGKATAGRT 464

Query:   299 AAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWLACLFISIAFISL 358
              AF IF V +++ALF SL+             KA +  V + +K+MWLA   ++ A+ + 
Sbjct:   465 LAFKIFSVANNIALFTSLSIVTLLVSIISYRTKALKMCVVIAHKMMWLAVASMATAYAAS 524

Query:   359 TYVVV--GEHSRWLAVSATVIGGTIMLTTIGSMCYCVILHRMEAKKLR 404
              ++ V   E S+WL  + + I    + +    + + ++ H ++  KLR
Sbjct:   525 AWITVPHNEGSKWLVYTTSAIASVALGSMFVYVSFMMVKHILKKDKLR 572

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 100/412 (24%), Positives = 187/412 (45%)

Query:     1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTT-----DLSCSTALHTAAAQGHIDVVNFLL 55
             +D ++F        +V   +L  FP L         D S ST LH A  +G +++ + LL
Sbjct:   133 LDELNFALSSGSTCIV-GIILERFPELARKNAWEVEDGSRSTLLHYACDKGDLELTSILL 191

Query:    56 EIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDP-STGFRTDKKGQTALHMAVKGQ 114
              ++  L +   + G + LH A + G + +++  + K P S   RT  K +T  H+A + +
Sbjct:   192 GLNQGLEEALNSKGLSPLHLAVQRGSVIILEEFMDKSPLSFCVRTPSK-ETVFHLAARNK 250

Query:   115 NEDIVL----ELIRPDPSVLKLEDNKGNTALHIAIKKG-RTQIVRCLLSIEGIDVNSLNK 169
             N D  +     L    P +LK +D +GNT LHIA      + ++R ++  + ID+   N 
Sbjct:   251 NTDAFVFMAENLGTSSPILLKKKDQQGNTVLHIAASVSCGSPLIRYIVGKKIIDIRDRNN 310

Query:   170 AGESPLDVAEKLGNTELF--SLL----KEAGAAHSK--DHGKPPSATKQLKQTVSDIKHD 221
              G     +  +      F  S L    K +    SK  +  +P     ++ + +  I+  
Sbjct:   311 MGYRAYHLLPRQAQDYEFISSYLRCDTKTSEEVDSKKAERNEPHIGHSEVIRLLKLIEIS 370

Query:   222 VQSQLQQSR-QTGFXXXXXXXXXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQY 280
                  ++ + +                   L NA N+  +VAVLIA+V++A     PG  
Sbjct:   371 TSEIAERKKSKKHHVKRGHKSLEHEMHIEALQNARNTIAIVAVLIASVSYAGGINPPGGV 430

Query:   281 VEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVI 340
              ++   G   G++ +   AAF +F + +++ALF SL            + K  ++L+   
Sbjct:   431 YQD---GPWKGKSLVGNTAAFKVFAICNNIALFTSLCIVILLVSIIPYQRKPLKKLLVAT 487

Query:   341 NKLMWLACLFISIAFISLTYVVVGEH--SRWL-AVSATVIGG--TIMLTTIG 387
             +++MW++  F++ A+++ + V +     +RWL  V  +V GG  T++ + +G
Sbjct:   488 HRMMWVSVGFMATAYVAASLVTIPHFPGTRWLFPVIISVAGGSLTVLFSYLG 539

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 2.9e-21, P = 2.9e-21
 Identities = 100/391 (25%), Positives = 173/391 (44%)

Query:    16 VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 75
             + + +L  FP L    D   ST LH A    ++++   LLEID +LA+    +G T LH 
Sbjct:   165 IARRMLERFPKLAWNADGELSTPLHHACNANNLEITKMLLEIDESLAERVNKDGFTPLHL 224

Query:    76 AARMGHLEVVKALVSKDPST-GFRTDKKGQTALHMAVKGQNEDIVLELIR-PDPS-VLKL 132
             AA    + ++K    K P      T  K +T  H+A + +N      +   PD + +L  
Sbjct:   225 AAMKCSIPILKEFSDKAPRYFDILTPAK-ETVFHLAAEHKNILAFYFMAESPDRNNLLHQ 283

Query:   133 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
              D  GNT LH A+      ++  +     ID+++ N  G   +D            L+  
Sbjct:   284 VDRYGNTVLHTAVMSSCYSVIVSITYETTIDLSAKNNRGLKAVD------------LINV 331

Query:   193 AGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQ----LQQSRQTGFXXXXXXXXXXXXXX 248
                 +SK         KQ++ ++SD  H   ++    L + ++                 
Sbjct:   332 DDEDYSKISRWLRFDAKQIR-SLSDPNHQQGNKNMGVLSEYKKMQIFETPSKRESKMHAE 390

Query:   249 SGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFD 308
             + L NA N+ T+VAVLIA+VAF      PG   +E   G   G++   +  AF +F + +
Sbjct:   391 A-LLNARNTITIVAVLIASVAFTCGINPPGGVYQE---GPYKGKSTAGRTLAFQVFSISN 446

Query:   309 SLALFISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVVVG--EH 366
             ++ALF SL              +  +  + + ++++W+A   +++A++S   +++   E 
Sbjct:   447 NIALFTSLCIVILLVSIIPYRTRPLKNFLKLTHRILWVAVASMALAYVSAASIIIPHVEG 506

Query:   367 SRWLAVSATVIGGTIMLTTIGS-MCYCVILH 396
              RWL  +   I  T+ML  + + M Y VI H
Sbjct:   507 KRWLFTTVLSIS-TLMLGGLFAFMTYKVIRH 536

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XVII.101.1	hypothetical protein (522 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.IV.1389.1	hypothetical protein (265 aa)			•						0.471
	eugene3.00181080	hypothetical protein (150 aa)			•						0.427
	grail3.0053014401	hypothetical protein (105 aa)			•						0.406

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	437
pfam13962	114	pfam13962, PGG, Domain of unknown function	2e-29
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-28
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-27
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-20
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-19
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-07
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	3e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-05
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	8e-05
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	9e-05
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	1e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-04
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	3e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-04
PHA02743	166	PHA02743, PHA02743, Viral ankyrin protein; Provisi	5e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.002
smart00248	30	smart00248, ANK, ankyrin repeats	0.002
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.003
smart00248	30	smart00248, ANK, ankyrin repeats	0.004

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  110 bits (278), Expect = 2e-29
 Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 3/114 (2%)

Query: 250 GLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKN-AAFIIFFVFD 308
            L    NS  VVA LIATV FAA FT PG Y ++   G   G   +A     F  FFV +
Sbjct: 3   WLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQD-DGGHHAGTPILAGKPRRFKAFFVSN 61

Query: 309 SLALFISLAVVVVQTSVVVIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVV 362
           ++A   SL  V++   +V    +   +L   +  L+WL+ L + +AF + +Y V
Sbjct: 62  TIAFVASLVAVILLLYIVPSFSRRLPRL-LALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  107 bits (269), Expect = 4e-28
 Identities = 50/124 (40%), Positives = 68/124 (54%), Gaps = 3/124 (2%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD 126
            +G+T LH AA  GHLEVVK L+          D  G+T LH+A K  + +IV  L+   
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 127 PSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL 186
             V    D  GNT LH+A + G   +V+ LL   G DVN+ +K G +PL +A K G+ E+
Sbjct: 64  ADV-NARDKDGNTPLHLAARNGNLDVVKLLLK-HGADVNARDKDGRTPLHLAAKNGHLEV 121

Query: 187 FSLL 190
             LL
Sbjct: 122 VKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  105 bits (263), Expect = 3e-27
 Identities = 51/127 (40%), Positives = 71/127 (55%), Gaps = 3/127 (2%)

Query: 31  TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVS 90
            D    T LH AA+ GH++VV  LLE  +++     N+G+T LH AA+ GHLE+VK L+ 
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 91  KDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT 150
           K        DK G T LH+A +  N D+V  L++    V    D  G T LH+A K G  
Sbjct: 62  KGADV-NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVN-ARDKDGRTPLHLAAKNGHL 119

Query: 151 QIVRCLL 157
           ++V+ LL
Sbjct: 120 EVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 84.4 bits (209), Expect = 8e-20
 Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 2/97 (2%)

Query: 99  TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
            D+ G+T LH+A    + ++V  L+  + + +  +DN G T LH+A K G  +IV+ LL 
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            +G DVN+ +K G +PL +A + GN ++  LL + GA
Sbjct: 62  -KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGA 97

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 84.0 bits (208), Expect = 1e-19
 Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 3/108 (2%)

Query: 16  VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 75
           V+K LL    + V   D    T LH AA  GH+++V  LLE  +++      +G T LH 
Sbjct: 22  VVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARD-KDGNTPLHL 79

Query: 76  AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 123
           AAR G+L+VVK L+        R DK G+T LH+A K  + ++V  L+
Sbjct: 80  AARNGNLDVVKLLLKHGADVNAR-DKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 80.3 bits (197), Expect = 4e-17
 Identities = 55/181 (30%), Positives = 69/181 (38%), Gaps = 9/181 (4%)

Query: 31  TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVS 90
           +D   +  L  A           L  I          +G+  LHSAA  G  ++VK L++
Sbjct: 35  SDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLA 94

Query: 91  KDPSTGFRTDKKGQTALHMAVKGQNE-----DIVLELIR--PDPSVLKLEDNKGNTALHI 143
                    D  G T LH+A    N      ++   L+    D  V  L D  GNT LH 
Sbjct: 95  SGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHW 153

Query: 144 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGK 203
           A   G   IV  LL   G D NS N  G + LD A K G  EL  LL + G   S     
Sbjct: 154 AALNGDADIVELLLEA-GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFN 212

Query: 204 P 204
            
Sbjct: 213 L 213

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 71.9 bits (177), Expect = 1e-15
 Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 7/97 (7%)

Query: 73  LHSAARMGHLEVVKALVSKDPS-TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLK 131
           LH AA+ G+LE+VK L+ K        TD    TALH+A +  N +IV  L+     V  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD----TALHLAARNGNLEIVKLLLEHGADV-N 55

Query: 132 LEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN 168
            +D  GNTALH+A + G  +IV+ LL   G D+N  +
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLE-HGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 71.1 bits (175), Expect = 2e-15
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 4/85 (4%)

Query: 39  LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 98
           LH AA  G++++V  LLE     A +   +  T LH AAR G+LE+VK L+        +
Sbjct: 1   LHLAAKNGNLELVKLLLEKG---ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 99  TDKKGQTALHMAVKGQNEDIVLELI 123
            DK G TALH+A +  N +IV  L+
Sbjct: 58  -DKDGNTALHLAARNGNLEIVKLLL 81

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 66.1 bits (162), Expect = 1e-13
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 107 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNS 166
           LH+A K  N ++V  L+     V   + +   TALH+A + G  +IV+ LL   G DVN+
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLLLE-HGADVNA 56

Query: 167 LNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            +K G + L +A + GN E+  LL E GA
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 36 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDP 93
           TALH AA  G++++V  LLE  +++      +G T LH AAR G+LE+VK L+    
Sbjct: 29 DTALHLAARNGNLEIVKLLLEHGADV-NAKDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 34/178 (19%)

Query: 37  TALHTAAAQGHID--VVNFLLE--IDSNLAKIARNN-GKTVLHSAARMGH--LEVVKALV 89
           T LH   +  +I+  V+  LL    D N    A +  G T L    +  +  +E+++ L+
Sbjct: 119 TPLHVYLSGFNINPKVIRLLLRKGADVN----ALDLYGMTPLAVLLKSRNANVELLRLLI 174

Query: 90  SKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLK----------LEDNKGNT 139
                  +  D + ++ LH           L+  +P   +++            D  GNT
Sbjct: 175 DAGADV-YAVDDRFRSLLH---------HHLQSFKPRARIVRELIRAGCDPAATDMLGNT 224

Query: 140 ALHIAIKKG--RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            LH        +  +V  LL I GI +N+ N+ G++PL  A    N      L   GA
Sbjct: 225 PLHSMATGSSCKRSLVLPLL-IAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGA 281

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 35 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV 89
            TALH AA  G +++V +LLE   ++ +    +G T LH AA  G+LEV+K L+
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 71  TVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 123
           T LH AA  G LE+VK L+ K      RTD+ G TALH+A +  N +++  L+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 63/199 (31%), Positives = 99/199 (49%), Gaps = 16/199 (8%)

Query: 1   MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 60
           M +I    QQ    L++ E+L E    V   D+ C T +H AA +G+  +VN LL   ++
Sbjct: 146 MKLIKERIQQDE--LLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGAD 203

Query: 61  LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL 120
           +  IA  +  +VL  A    +++ +KA++    +       K   +L  A++  NED+  
Sbjct: 204 VNIIAL-DDLSVLECAVDSKNIDTIKAIIDNRSNI-----NKNDLSLLKAIR--NEDLET 255

Query: 121 ELIRPDP--SVLKLEDNKGNTALHIAIKK-GRTQIVRCLLSIEGIDVNSLNKAGESPLDV 177
            L+  D   SV  ++D K NT LH A +    +++V  LL   G DVN+ N  GE+PL +
Sbjct: 256 SLLLYDAGFSVNSIDDCK-NTPLHHASQAPSLSRLVPKLLE-RGADVNAKNIKGETPLYL 313

Query: 178 AEKLG-NTELFSLLKEAGA 195
             K G +TE    L   GA
Sbjct: 314 MAKNGYDTENIRTLIMLGA 332

Length = 682

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 52/166 (31%), Positives = 74/166 (44%), Gaps = 6/166 (3%)

Query: 16  VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 75
           + K LL    ++ M      +TALH A       +   LL   +N+    + N  + LH 
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTN-NSPLHH 207

Query: 76  AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLED 134
           A +  +  +V  L+    ST  R DK G T LH++V   ++ DI+  L+     V     
Sbjct: 208 AVKHYNKPIVHILLENGASTDAR-DKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY 266

Query: 135 NKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK 180
             G TALH +IK  R      LL   G D+NSLN    +PL  A K
Sbjct: 267 ILGLTALHSSIKSER---KLKLLLEYGADINSLNSYKLTPLSSAVK 309

Length = 477

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 122 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 178
           L+   P  L   D  GNT LH+A K G  ++V+  L   G+D+N  +  G + LD+A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQ-WLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 50/172 (29%), Positives = 75/172 (43%), Gaps = 22/172 (12%)

Query: 31  TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV- 89
            D    T LH AA++G+ D V  LL+   N+  I   NG T L +A    H ++ + L  
Sbjct: 554 GDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAISAKHHKIFRILYH 612

Query: 90  ---SKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK 146
                DP             L  A K  +   + EL++   +V   ED++G TAL +A+ 
Sbjct: 613 FASISDPHA-------AGDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQGATALQVAMA 664

Query: 147 KGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS 198
           +    +VR LL + G DV+  N          +    TEL  LL++    HS
Sbjct: 665 EDHVDMVR-LLIMNGADVDKAN--------TDDDFSPTELRELLQKRELGHS 707

Length = 823

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 55/219 (25%), Positives = 96/219 (43%), Gaps = 32/219 (14%)

Query: 3   MIHFMWQQSRVILVLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHI-----DVVNFLL 55
           +  ++ +++R I V+K LL  G   N     +   ST LH  +   +      ++V  LL
Sbjct: 37  LPLYLAKEARNIDVVKILLDNGADINSSTKNN---STPLHYLSNIKYNLTDVKEIVKLLL 93

Query: 56  EIDSNLAKIARNNGKTVLHSAA--RMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG 113
           E  +N+     NNG T L  A   +     +V+ L+    +   +    G+  LH+ ++ 
Sbjct: 94  EYGANVNAPD-NNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKN-SDGENLLHLYLES 151

Query: 114 QNEDI-VLELI-----------RPD-----PSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
              D+ +L+L+           R +        + ++D  G T LH A+     + V+ L
Sbjct: 152 NKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYL 211

Query: 157 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           L   G + N +NK G++PL +A    N E+F LL   G 
Sbjct: 212 LD-LGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 249

Length = 422

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 51.5 bits (123), Expect = 5e-07
 Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 39  LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF- 97
           LH A  +G +  V  LL++      +   +G T LH A  +  L+++K L+++       
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP 131

Query: 98  RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 157
            TDK   + LH+AV   +   + EL+    + L +ED  G T L IA+ KG   I + LL
Sbjct: 132 NTDKF--SPLHLAVMMGDIKGI-ELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLL 188

Query: 158 SIEGIDVNSLNKAG 171
              G +++   K G
Sbjct: 189 D-SGANIDYFGKNG 201

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 88  LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA 144
           L+   P     TD  G T LH+A K    ++V  L++P    L L D+ G TAL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 48  IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQT 105
            + VN+LL     +  I    G T LH A    + E VK L+    +P+     +K G T
Sbjct: 172 KNRVNYLLSYGVPI-NIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL---VNKYGDT 227

Query: 106 ALHMAVKGQNEDIVLELIRPDPSV 129
            LH+A+   N++I   L+   PS+
Sbjct: 228 PLHIAILNNNKEIFKLLLNNGPSI 251

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 19/165 (11%)

Query: 48  IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH---LEVVKALVSKDPSTGFRTDKK-- 102
           ++ V  LL   +++       GKT LH           ++V+ L+      G   +    
Sbjct: 27  VEEVRRLLAAGADV-NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA----GADVNAPER 81

Query: 103 -GQTALHMAVKGQN-EDIVLELIRPDPSVLKLEDNKGNTALHI--AIKKGRTQIVRCLLS 158
            G T LH+ +      D++  LI+    V   +D  G T LH+  +      +++R LL 
Sbjct: 82  CGFTPLHLYLYNATTLDVIKLLIKAGADVNA-KDKVGRTPLHVYLSGFNINPKVIRLLLR 140

Query: 159 IEGIDVNSLNKAGESPLDVAEKLGNT--ELFSLLKEAGA-AHSKD 200
            +G DVN+L+  G +PL V  K  N   EL  LL +AGA  ++ D
Sbjct: 141 -KGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVD 184

Length = 471

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 48/146 (32%), Positives = 64/146 (43%), Gaps = 18/146 (12%)

Query: 57  IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE 116
           + SNL  +A      +L         E++KA    DP  G   D KG+T LH+A     E
Sbjct: 525 MASNLLTVASTGNAALLE--------ELLKA--KLDPDIG---DSKGRTPLHIAASKGYE 571

Query: 117 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 176
           D VL L++   +V  + D  GNTAL  AI     +I R L     I   S   A    L 
Sbjct: 572 DCVLVLLKHACNV-HIRDANGNTALWNAISAKHHKIFRILYHFASI---SDPHAAGDLLC 627

Query: 177 VAEKLGN-TELFSLLKEAGAAHSKDH 201
            A K  + T +  LLK+     S+DH
Sbjct: 628 TAAKRNDLTAMKELLKQGLNVDSEDH 653

Length = 823

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
           D  G T LHIA   G  Q+VR LL   G D   L+K G++PL++AE+ G  E+  LL   
Sbjct: 112 DYDGRTPLHIACANGHVQVVRVLLEF-GADPTLLDKDGKTPLELAEENGFREVVQLLSRH 170

Query: 194 GAAHSK--DHGKPPSATKQ 210
              H +   + KP S T +
Sbjct: 171 SQCHFELGANAKPDSFTGK 189

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 105 TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 157
           TALH A      ++V  L+     + +  D  GNTALHIA + G  ++++ LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 54  LLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA 110
           LLE           NG T LH AA+ G LE+V+ L+ K        D  G TAL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 6/151 (3%)

Query: 28  VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
           V   D    T LH A  +G ++ +  L E  +++  I  +NG   +H A +    +++K 
Sbjct: 117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKL 175

Query: 88  LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 147
           L+ K      + D  G++ LH A +  +   + +L+    + +  +   G T LH AI  
Sbjct: 176 LLEKGAYANVK-DNNGESPLHNAAEYGDYACI-KLLIDHGNHIMNKCKNGFTPLHNAIIH 233

Query: 148 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 178
            R+  +  L++   I+   ++  G +PL  A
Sbjct: 234 NRS-AIELLINNASINDQDID--GSTPLHHA 261

Length = 434

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.5 bits (101), Expect = 6e-06
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 169
            GNT LH+A + G  ++V+ LL   G DVN+ +K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLE-AGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 8/132 (6%)

Query: 49  DVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTA 106
           D++  +L+  ID N   I     KT LH A + G LE +K L           D  G   
Sbjct: 105 DMIKTILDCGIDVN---IKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE-DDNGCYP 160

Query: 107 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNS 166
           +H+A+K    DI+ +L+    +   ++DN G + LH A + G    ++ L+   G  + +
Sbjct: 161 IHIAIKHNFFDII-KLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLID-HGNHIMN 218

Query: 167 LNKAGESPLDVA 178
             K G +PL  A
Sbjct: 219 KCKNGFTPLHNA 230

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 9/150 (6%)

Query: 49  DVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTA 106
           ++   LL   +++    R+ G T LH A       + + L+S   + +   +T+    + 
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNN---SP 204

Query: 107 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNS 166
           LH AVK  N+ IV  L+    S     D  GNT LHI++   +   +  LL   G+DVN+
Sbjct: 205 LHHAVKHYNKPIVHILLENGAST-DARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNA 263

Query: 167 LNKA-GESPLDVAEKLGNTELFSLLKEAGA 195
            +   G + L  +  + +     LL E GA
Sbjct: 264 KSYILGLTALHSS--IKSERKLKLLLEYGA 291

Length = 477

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 48  IDVVNFLLEIDSNLAKIARNN-GKTVLHSAARMGHLEVVKALVSKDPSTGFR-----TDK 101
           ++  +F+  ++  +A+  +N+ G+   H AAR G  +++                  TD 
Sbjct: 1   MESPHFMTCLEEMIAE--KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDD 58

Query: 102 KGQTALHMAVKGQNEDIVLELIRP----DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 157
            GQ  +H+A +     +  E+I         +   E  +G+TALH+A  +    +   L 
Sbjct: 59  AGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLC 118

Query: 158 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
              GID++  N   +SP ++A    +  +  +L+E  A
Sbjct: 119 CQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVA 156

Length = 169

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 137 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 190
           G TALH A   GR ++V+ LL  +G+D+N  ++ G + L +A + GN E+  LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLE-KGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 44.6 bits (105), Expect = 8e-05
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
           D + +T LH A+K  + + +  L      V  +ED+ G   +HIAIK     I++ LL  
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLE- 178

Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLL 190
           +G   N  +  GESPL  A + G+     LL
Sbjct: 179 KGAYANVKDNNGESPLHNAAEYGDYACIKLL 209

Length = 434

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 54/225 (24%), Positives = 78/225 (34%), Gaps = 67/225 (29%)

Query: 17  LKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN-------- 68
           L ELL          D    T LH A +  ++D V  +L     L    R +        
Sbjct: 68  LTELLLNLSCRGAVGD----TLLH-AISLEYVDAVEAILLH---LLAAFRKSGPLELAND 119

Query: 69  --------GKTVLHSAARMGHLEVVKALV----------------SKDPSTGFRTDKKGQ 104
                   G T LH AA   + E+VK L+                       F     G+
Sbjct: 120 QYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFY---HGE 176

Query: 105 TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI---------KKGRTQI--- 152
           + L+ A    +  IV  L   DP+ +   D+ GNT LH+ +         ++   Q+   
Sbjct: 177 SPLNAAACLGSPSIVALLSE-DPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNF 235

Query: 153 -------VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 190
                  +R    +E I    LN  G +PL +A K G   LF L 
Sbjct: 236 ALSLLDKLRDSKELEVI----LNHQGLTPLKLAAKEGRIVLFRLK 276

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 21/108 (19%)

Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDP-SVLKL-----------EDNKGNTALHIAIKK 147
           ++ G+  +H+     N D        DP   LKL           E   GNT LHIA+  
Sbjct: 52  NRHGKQCVHIVS---NPDKA------DPQEKLKLLMEWGADINGKERVFGNTPLHIAVYT 102

Query: 148 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
              ++   L +  G+++  LN A ++P  VA +  + ++ ++L+  GA
Sbjct: 103 QNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGA 150

Length = 154

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 55/180 (30%), Positives = 80/180 (44%), Gaps = 27/180 (15%)

Query: 28  VMTTDLSCSTALHTAAA-QGHIDVVNFLLEIDSNLAKIARNN-GKTVLHSAARMGHLEVV 85
           V   D    T LH A+    + D+V  LLE+ +N+   AR+   KT +H AA   ++ ++
Sbjct: 334 VNAADRLYITPLHQASTLDRNKDIVITLLELGANVN--ARDYCDKTPIHYAAVRNNVVII 391

Query: 86  KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN------- 138
             L+         + K G TALH A+ G N         P  SV  L D   N       
Sbjct: 392 NTLLDYGADIEALSQKIG-TALHFALCGTN---------PYMSVKTLIDRGANVNSKNKD 441

Query: 139 --TALHIAIKKG-RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
             T LH A KK  +  ++  LL   G DVN++N   + PL +A  L    + ++L   GA
Sbjct: 442 LSTPLHYACKKNCKLDVIEMLLD-NGADVNAINIQNQYPLLIA--LEYHGIVNILLHYGA 498

Length = 682

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 16/33 (48%), Positives = 18/33 (54%)

Query: 68  NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTD 100
           +G T LH AAR GHLEVVK L+        R  
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 9/136 (6%)

Query: 48  IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG---HLEVVKALVSKDPSTGFRTDKKGQ 104
           ++++ FL+E  +++    R+N  + LH           E++K L+    S     D+ G+
Sbjct: 66  VEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSIT-EEDEDGK 124

Query: 105 TALHMAVKGQNE--DIVLELIRPDPSVLKLEDNKGNTALHIAIK-KGRTQIVRCLLSIEG 161
             LHM +   N   +++  LI    S L  +D   N  L+  I      +I   L S+ G
Sbjct: 125 NLLHMYMCNFNVRINVIKLLIDSGVSFLN-KDFDNNNILYSYILFHSDKKIFDFLTSL-G 182

Query: 162 IDVNSLNKAGESPLDV 177
           ID+N  NK+G +  D+
Sbjct: 183 IDINETNKSGYNCYDL 198

Length = 209

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 20 LLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLH 74
          LL   P  +  TD + +T LH AA  G +++V +LL+   +L  +  ++G T L 
Sbjct: 1  LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL-NLRDSDGLTALD 54

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 6/125 (4%)

Query: 73  LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVL 130
           LH A   G ++ V+ L+           K G T LH+A   +  DI+  LI    DP + 
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDI- 130

Query: 131 KLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 190
              +    + LH+A+  G  + +  L+  +   ++  +  G +PL +A   G+  +  +L
Sbjct: 131 --PNTDKFSPLHLAVMMGDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMAKGDIAICKML 187

Query: 191 KEAGA 195
            ++GA
Sbjct: 188 LDSGA 192

Length = 413

>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 3/103 (2%)

Query: 97  FRTDKKGQTALHMAVKGQNEDIVLE---LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
            R D  G+   HM       + V++   L+     +   E   GNT LHIA      ++ 
Sbjct: 51  HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELA 110

Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
             L    G+++ ++N   E+   +A K+ +  +  +L+  GA 
Sbjct: 111 EWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAV 153

Length = 166

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 24/182 (13%)

Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPST 95
           S  L      G I+ +  +++   N   I+ +   T L  A R G  ++V+  +      
Sbjct: 2   SQDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADI 61

Query: 96  GFRTDKKGQTALHMAVKGQNEDIVLELIRP--DPSVL--------------------KLE 133
               + K    L  A+K    DI+  LI    D S+L                     ++
Sbjct: 62  N-HINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIK 120

Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
           D +  T LH AIKKG  + ++ L    G DVN  +  G  P+ +A K    ++  LL E 
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFEY-GADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEK 179

Query: 194 GA 195
           GA
Sbjct: 180 GA 181

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 47/198 (23%), Positives = 74/198 (37%), Gaps = 34/198 (17%)

Query: 30  TTDLSC--STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
           +T  S      LH A    ++DVV  LL    N+ +   +   T LH   +  +   +K 
Sbjct: 30  STSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPD-HRDLTPLHIICKEPNKLGMKE 88

Query: 88  LVS-KDPSTGFRTDKKGQTALH-----------MAVKGQNEDIVLELIRP-------DPS 128
           ++   +  + F T    + A +                  + I L  I         +  
Sbjct: 89  MIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAE 148

Query: 129 VLKL-----------EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV 177
           + KL           + +KGNTALH A +    ++   LL   G +VN  +K   SPL  
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLL-SYGANVNIPDKTNNSPLHH 207

Query: 178 AEKLGNTELFSLLKEAGA 195
           A K  N  +  +L E GA
Sbjct: 208 AVKHYNKPIVHILLENGA 225

Length = 477

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 37 TALHTAAAQGHIDVVNFLLEIDSNL 61
          T LH AA  GH++VV  LLE  +++
Sbjct: 4  TPLHLAARNGHLEVVKLLLEAGADV 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 36/169 (21%), Positives = 56/169 (33%), Gaps = 40/169 (23%)

Query: 73  LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVK----GQNEDIVLELIRPDPS 128
             +A    +LE+ + L++            G T LH             ++  L     S
Sbjct: 57  FVAAIENENLELTELLLNLS-----CRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKS 111

Query: 129 VLKLEDN--------KGNTALHIAIKKGRTQIVRCLLS--------------IEGIDVNS 166
                 N         G TALH+A  +   +IV+ LL               ++   V+S
Sbjct: 112 GPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDS 171

Query: 167 LNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTV 215
               GESPL+ A  LG+  + +LL E                  L  T+
Sbjct: 172 F-YHGESPLNAAACLGSPSIVALLSE--------DPADILTADSLGNTL 211

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 68 NGKTVLHSAARMGHLEVVKALVSKDPS 94
          +G+T LH AA  G+LEVVK L+ K   
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDKGAD 27

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVN 165
            GNT LH+A + G  ++V+ LL   G D+N
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLE-HGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVN 165
            G T LH+A + G  ++V+ LL  +G D+N
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLD-KGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	437
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	99.98
PHA02875	413	ankyrin repeat protein; Provisional	99.98
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.96
PHA03095	471	ankyrin-like protein; Provisional	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
PHA03095	471	ankyrin-like protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
PF13962	113	PGG: Domain of unknown function	99.93
KOG0508	615	consensus Ankyrin repeat protein [General function	99.93
PHA02917	661	ankyrin-like protein; Provisional	99.93
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
PHA02917	661	ankyrin-like protein; Provisional	99.91
PHA02795	437	ankyrin-like protein; Provisional	99.9
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
PHA02730	672	ankyrin-like protein; Provisional	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
PHA02792	631	ankyrin-like protein; Provisional	99.9
PHA02730	672	ankyrin-like protein; Provisional	99.88
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.88
PHA02741	169	hypothetical protein; Provisional	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.87
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.87
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.86
PHA02792	631	ankyrin-like protein; Provisional	99.86
PHA02741	169	hypothetical protein; Provisional	99.85
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.85
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.85
PHA02884	300	ankyrin repeat protein; Provisional	99.84
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.84
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.82
KOG0514	452	consensus Ankyrin repeat protein [General function	99.82
PHA02884	300	ankyrin repeat protein; Provisional	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.79
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.72
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.72
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.71
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.7
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.7
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.68
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.68
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.65
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.61
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.59
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.46
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.4
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.39
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.39
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.38
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.35
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.35
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.35
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.33
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.32
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.32
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.32
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.8
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.76
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.7
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.68
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.65
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.6
PF13606	30	Ank_3: Ankyrin repeat	98.59
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.58
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.54
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.52
PF13606	30	Ank_3: Ankyrin repeat	98.52
KOG0522	560	consensus Ankyrin repeat protein [General function	98.52
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.49
KOG0522	560	consensus Ankyrin repeat protein [General function	98.42
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.33
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.22
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.2
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.19
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.15
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.14
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.08
KOG0511	516	consensus Ankyrin repeat protein [General function	97.9
KOG2384	223	consensus Major histocompatibility complex protein	97.89
KOG0511	516	consensus Ankyrin repeat protein [General function	97.8
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.79
KOG2384	223	consensus Major histocompatibility complex protein	97.72
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.49
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.46
KOG2505	591	consensus Ankyrin repeat protein [General function	96.11
KOG2505	591	consensus Ankyrin repeat protein [General function	94.84
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.8
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	92.42
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.52
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	88.11
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	86.87
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	83.96

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-36  Score=254.00  Aligned_cols=201  Identities=29%  Similarity=0.408  Sum_probs=179.6

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccC-CCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTT-DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~-d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      ++.+.++.... ..-++.+++..|.-++.+ |.+|+||||+||+.||.++|.+|++.-.-..+-+|..||||||+||..|
T Consensus         5 ~~~~~~~~~~~-~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g   83 (226)
T KOG4412|consen    5 SLGKAICENCE-EFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNG   83 (226)
T ss_pred             chHHHHHhhch-HHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcC
Confidence            57788888888 899999999999544444 5599999999999999999999996422223556889999999999999


Q ss_pred             CHHHHHHHHhC-CCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcc
Q 013760           81 HLEVVKALVSK-DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI  159 (437)
Q Consensus        81 ~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  159 (437)
                      +.++|+.|+.+ +++++. +++.|+||||+|+..|+.|++++|+++++.+ +.+|..|.||||-|+..|..+++++|+. 
T Consensus        84 ~~evVk~Ll~r~~advna-~tn~G~T~LHyAagK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGklkvie~Li~-  160 (226)
T KOG4412|consen   84 NDEVVKELLNRSGADVNA-TTNGGQTCLHYAAGKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKLKVIEYLIS-  160 (226)
T ss_pred             cHHHHHHHhcCCCCCcce-ecCCCcceehhhhcCChhhHHHHHHhcCCCC-cccccccCchhHHHHhccchhhHHHHHh-
Confidence            99999999999 888875 4899999999999999999999999999665 9999999999999999999999999999 


Q ss_pred             cCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCh
Q 013760          160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSA  207 (437)
Q Consensus       160 ~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~  207 (437)
                      .|+.+|.+|..|+||||+|...++.+...+|+++||+....++.+ ++
T Consensus       161 ~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~  207 (226)
T KOG4412|consen  161 QGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TA  207 (226)
T ss_pred             cCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-ch
Confidence            789999999999999999988899999999999999998887755 44

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.8e-33  Score=265.73  Aligned_cols=194  Identities=22%  Similarity=0.179  Sum_probs=174.7

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      .||||.|+..|+ .++++.|++.+.+.. ..  +|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|
T Consensus        31 ~TpLh~Aa~~g~-~eiv~~Ll~~ga~~n-~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g  105 (284)
T PHA02791         31 HSALYYAIADNN-VRLVCTLLNAGALKN-LL--ENEFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVDSG  105 (284)
T ss_pred             CcHHHHHHHcCC-HHHHHHHHHCcCCCc-CC--CCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcC
Confidence            589999999999 999999999986532 22  5799999999999999999999999987 678999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCC-CcHHHHHHhCCCHHHHHHhhcCCCCccccCC-CCCChHHHHHHHcCcHHHHHHhhc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKG-QTALHMAVKGQNEDIVLELIRPDPSVLKLED-NKGNTALHIAIKKGRTQIVRCLLS  158 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g-~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~G~TpLh~A~~~g~~~iv~~Ll~  158 (437)
                      +.+++++|++.+++.+.. +..| .||||+|+..|+.+++++|++.+++.   .| ..|+||||+|+..|+.+++++|++
T Consensus       106 ~~eivk~Ll~~gadin~~-~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~---~d~~~g~TpLh~Aa~~g~~eiv~lLL~  181 (284)
T PHA02791        106 NMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLD  181 (284)
T ss_pred             CHHHHHHHHHCCCCcCcc-CCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc---cccccCccHHHHHHHcCCHHHHHHHHH
Confidence            999999999999998754 6777 59999999999999999999987654   23 358999999999999999999999


Q ss_pred             ccCCCccccccCCCCH-HHHHHHcCcHHHHHHHHHcCCCcccCCCCC
Q 013760          159 IEGIDVNSLNKAGESP-LDVAEKLGNTELFSLLKEAGAAHSKDHGKP  204 (437)
Q Consensus       159 ~~g~~~n~~n~~G~T~-L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~  204 (437)
                       .|+++|.+|..|.|| ||+|+..|+.+++++|+++|++....+..+
T Consensus       182 -~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~  227 (284)
T PHA02791        182 -YMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN  227 (284)
T ss_pred             -CCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC
Confidence             899999999999987 999999999999999999999997766543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-34  Score=241.69  Aligned_cols=174  Identities=29%  Similarity=0.375  Sum_probs=159.9

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhc-CCchhHhhhcCCCcHHHHHHHc
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEI-DSNLAKIARNNGKTVLHSAARM   79 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~G~tpLh~Aa~~   79 (437)
                      .||||.||.-|+ .++++.|+..-.-.++..|..|+||||.||..|+.|+|+.|+.+ |+++ +..++.|.||||+|+..
T Consensus        39 Rt~LHwa~S~g~-~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK  116 (226)
T KOG4412|consen   39 RTPLHWACSFGH-VEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGK  116 (226)
T ss_pred             CceeeeeeecCc-hhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcC
Confidence            389999999999 99999999754334567799999999999999999999999999 8887 77889999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcc
Q 013760           80 GHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI  159 (437)
Q Consensus        80 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  159 (437)
                      |..+++++|+++++.+.. +|+.|+||||.|+.-|..+++++|+..++.+ |.+|..|+||||.|...|+.+...+|++ 
T Consensus       117 ~r~eIaqlLle~ga~i~~-kD~~~qtplHRAAavGklkvie~Li~~~a~~-n~qDk~G~TpL~~al~e~~~d~a~lLV~-  193 (226)
T KOG4412|consen  117 GRLEIAQLLLEKGALIRI-KDKQGQTPLHRAAAVGKLKVIEYLISQGAPL-NTQDKYGFTPLHHALAEGHPDVAVLLVR-  193 (226)
T ss_pred             ChhhHHHHHHhcCCCCcc-cccccCchhHHHHhccchhhHHHHHhcCCCC-CcccccCccHHHHHHhccCchHHHHHHH-
Confidence            999999999999988765 5999999999999999999999999999665 9999999999999988999999999999 


Q ss_pred             cCCCccccccCCCCHHHHHHH
Q 013760          160 EGIDVNSLNKAGESPLDVAEK  180 (437)
Q Consensus       160 ~g~~~n~~n~~G~T~L~~A~~  180 (437)
                      .|++++..|++| ||+..|+.
T Consensus       194 ~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  194 AGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             hccceeeccccC-chHHHHHH
Confidence            889999999999 99888764

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=2e-31  Score=262.76  Aligned_cols=209  Identities=31%  Similarity=0.359  Sum_probs=190.4

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      +.++.|++.|+ ++-||.+++.....++..|.+|.|+||+||.+++++++++|+++|++++..-..-|.||||||+++|+
T Consensus        46 ~~~v~A~q~G~-l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   46 DDIVKATQYGE-LETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhHhhcch-HHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            35678999999 99999999995566778999999999999999999999999999999855445788999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccC
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG  161 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  161 (437)
                      ..+|+.|+++|+++... |.+|.||||+|++.|+.-.+.+++.++.++ +.+|.+|+||||+|+.+|....++.|++ .|
T Consensus       125 ~~vv~lLlqhGAdpt~~-D~~G~~~lHla~~~~~~~~vayll~~~~d~-d~~D~~grTpLmwAaykg~~~~v~~LL~-f~  201 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPTLK-DKQGLTPLHLAAQFGHTALVAYLLSKGADI-DLRDNNGRTPLMWAAYKGFALFVRRLLK-FG  201 (600)
T ss_pred             HHHHHHHHHcCCCCcee-cCCCCcHHHHHHHhCchHHHHHHHHhcccC-CCcCCCCCCHHHHHHHhcccHHHHHHHH-hc
Confidence            99999999999999865 999999999999999999999999999665 9999999999999999999888999998 89


Q ss_pred             CCccccc-cCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHHHHH
Q 013760          162 IDVNSLN-KAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQT  214 (437)
Q Consensus       162 ~~~n~~n-~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~  214 (437)
                      ++++..| ++|+||||.|+..|+.+++.++++.|++.+..+.+++++.+..++.
T Consensus       202 a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  202 ASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9999988 8999999999999999999988888898888888888887766543

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-31  Score=269.68  Aligned_cols=199  Identities=17%  Similarity=0.150  Sum_probs=182.2

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      ++||.|+..|+ .++++.|++.+.+. +..+.+|.||||+|+..|+.+++++|++.|+++ +..+.+|.||||.|+..|+
T Consensus         4 ~~L~~A~~~g~-~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          4 VALCDAILFGE-LDIARRLLDIGINP-NFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEEGD   80 (413)
T ss_pred             hHHHHHHHhCC-HHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHCCC
Confidence            68999999999 99999999988663 467789999999999999999999999999876 5677889999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccC
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG  161 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  161 (437)
                      .+++++|++.++......+.+|.||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..|+.+++++|++ .|
T Consensus        81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~-~g  158 (413)
T PHA02875         81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLID-HK  158 (413)
T ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHh-cC
Confidence            999999999998876666788999999999999999999999999886 8899999999999999999999999999 89


Q ss_pred             CCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCC
Q 013760          162 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPP  205 (437)
Q Consensus       162 ~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~  205 (437)
                      ++++.+|..|.||||+|+..|+.+++++|+++|++.......+.
T Consensus       159 ~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~  202 (413)
T PHA02875        159 ACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGC  202 (413)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCC
Confidence            99999999999999999999999999999999999877665554

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.98  E-value=2.5e-31  Score=272.47  Aligned_cols=204  Identities=25%  Similarity=0.292  Sum_probs=174.4

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHH-------------------------
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLL-------------------------   55 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll-------------------------   55 (437)
                      +||||.|+..|+ .++|+.|++.+.+ ++..|.+|.||||+||..|+.++++.|+                         
T Consensus        38 ~tPLh~A~~~g~-~e~vk~Ll~~gad-vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~e  115 (477)
T PHA02878         38 FIPLHQAVEARN-LDVVKSLLTRGHN-VNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVE  115 (477)
T ss_pred             cchHHHHHHcCC-HHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHH
Confidence            589999999999 9999999999876 4578999999999999987765555444                         


Q ss_pred             ---------------------------------------hcCCchhHhhhcC-CCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 013760           56 ---------------------------------------EIDSNLAKIARNN-GKTVLHSAARMGHLEVVKALVSKDPST   95 (437)
Q Consensus        56 ---------------------------------------~~~~~~~~~~~~~-G~tpLh~Aa~~g~~~iv~~Ll~~~~~~   95 (437)
                                                             ++|+++ +..+.+ |.||||+|+..|+.+++++|++.|+++
T Consensus       116 i~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~  194 (477)
T PHA02878        116 IFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELLLSYGANV  194 (477)
T ss_pred             HHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC
Confidence                                                   344443 334555 999999999999999999999999988


Q ss_pred             CcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHc-CcHHHHHHhhcccCCCcccccc-CCCC
Q 013760           96 GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK-GRTQIVRCLLSIEGIDVNSLNK-AGES  173 (437)
Q Consensus        96 ~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~-g~~~iv~~Ll~~~g~~~n~~n~-~G~T  173 (437)
                      +. .|..|.||||.|+..|+.++++.|++.|+++ +.+|.+|+||||+|+.. ++.+++++|++ .|+++|.++. .|.|
T Consensus       195 n~-~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i-n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~-~gadvn~~~~~~g~T  271 (477)
T PHA02878        195 NI-PDKTNNSPLHHAVKHYNKPIVHILLENGAST-DARDKCGNTPLHISVGYCKDYDILKLLLE-HGVDVNAKSYILGLT  271 (477)
T ss_pred             CC-cCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhcCCHHHHHHHHH-cCCCCCccCCCCCCC
Confidence            75 4889999999999999999999999998876 88999999999999975 68999999998 8999999886 7999


Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHHH
Q 013760          174 PLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  212 (437)
Q Consensus       174 ~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  212 (437)
                      |||.|  .++.+++++|+++|++.+..+..+.+|.....
T Consensus       272 pLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~  308 (477)
T PHA02878        272 ALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAV  308 (477)
T ss_pred             HHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            99999  56788999999999999888888888766554

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.98  E-value=3.2e-31  Score=266.98  Aligned_cols=195  Identities=23%  Similarity=0.289  Sum_probs=180.6

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +||||.|+..|+ .++++.|++.+.+ .+..+.++.||||.|+..|+.+++++|++.|+......+.+|.||||+|+..|
T Consensus        36 ~tpL~~A~~~~~-~~~v~~Ll~~ga~-~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~  113 (413)
T PHA02875         36 ISPIKLAMKFRD-SEAIKLLMKHGAI-PDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILK  113 (413)
T ss_pred             CCHHHHHHHcCC-HHHHHHHHhCCCC-ccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhC
Confidence            589999999999 9999999999865 34567789999999999999999999999998876677788999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhccc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  160 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  160 (437)
                      +.+++++|++.|+++... +..|.||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++ .
T Consensus       114 ~~~iv~~Ll~~gad~~~~-~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~TpL~~A~~~g~~eiv~~Ll~-~  190 (413)
T PHA02875        114 KLDIMKLLIARGADPDIP-NTDKFSPLHLAVMMGDIKGIELLIDHKACL-DIEDCCGCTPLIIAMAKGDIAICKMLLD-S  190 (413)
T ss_pred             CHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHh-C
Confidence            999999999999998754 889999999999999999999999998876 8899999999999999999999999999 8


Q ss_pred             CCCccccccCCC-CHHHHHHHcCcHHHHHHHHHcCCCcccC
Q 013760          161 GIDVNSLNKAGE-SPLDVAEKLGNTELFSLLKEAGAAHSKD  200 (437)
Q Consensus       161 g~~~n~~n~~G~-T~L~~A~~~~~~~i~~~L~~~ga~~~~~  200 (437)
                      |++++..+..|. ||+|+|+..++.+++++|+++|++.+..
T Consensus       191 ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~  231 (413)
T PHA02875        191 GANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM  231 (413)
T ss_pred             CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchH
Confidence            999999998875 7899999999999999999999998643

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.7e-30  Score=263.20  Aligned_cols=174  Identities=22%  Similarity=0.306  Sum_probs=130.5

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCch--------------------
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL--------------------   61 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~--------------------   61 (437)
                      ||||.|+..|+ .+++++|++.+.+. +..+..|.||||.|+..|+.+++++|++.|++.                    
T Consensus        37 tpL~~A~~~g~-~~iv~~Ll~~Ga~~-n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g  114 (434)
T PHA02874         37 TPLIDAIRSGD-AKIVELFIKHGADI-NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCG  114 (434)
T ss_pred             CHHHHHHHcCC-HHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCc
Confidence            78888888888 88888888887663 456777888888888888888888888776542                    


Q ss_pred             --hHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCCh
Q 013760           62 --AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNT  139 (437)
Q Consensus        62 --~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~T  139 (437)
                        .+.+|..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..|+.+++++|++.+.++ +..|.+|+|
T Consensus       115 ~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~-d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~-n~~~~~g~t  192 (434)
T PHA02874        115 IDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE-DDNGCYPIHIAIKHNFFDIIKLLLEKGAYA-NVKDNNGES  192 (434)
T ss_pred             CCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCc-CCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCC
Confidence              1235667888888888888888888888888877644 778888888888888888888888887665 677888888


Q ss_pred             HHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHH
Q 013760          140 ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK  180 (437)
Q Consensus       140 pLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~  180 (437)
                      |||+|+..|+.+++++|++ .|++++.++..|.||||.|+.
T Consensus       193 pL~~A~~~g~~~iv~~Ll~-~g~~i~~~~~~g~TpL~~A~~  232 (434)
T PHA02874        193 PLHNAAEYGDYACIKLLID-HGNHIMNKCKNGFTPLHNAII  232 (434)
T ss_pred             HHHHHHHcCCHHHHHHHHh-CCCCCcCCCCCCCCHHHHHHH
Confidence            8888888888888888887 555544444444444444433

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=8.4e-31  Score=247.63  Aligned_cols=183  Identities=20%  Similarity=0.208  Sum_probs=164.8

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCC-CcHHHHHHHc
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNG-KTVLHSAARM   79 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G-~tpLh~Aa~~   79 (437)
                      +||||.|+..|+ .++++.|++.+.+ .+..|..|.||||+|+..|+.+++++|++.|+++ +.++..| .||||+|+..
T Consensus        62 ~TpLh~Aa~~g~-~eiV~lLL~~Gad-vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~  138 (284)
T PHA02791         62 EFPLHQAATLED-TKIVKILLFSGMD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVML  138 (284)
T ss_pred             CCHHHHHHHCCC-HHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHc
Confidence            589999999999 9999999998766 4568999999999999999999999999999987 5577777 4899999999


Q ss_pred             CCHHHHHHHHhCCCCCCcccC-CCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChH-HHHHHHcCcHHHHHHhh
Q 013760           80 GHLEVVKALVSKDPSTGFRTD-KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA-LHIAIKKGRTQIVRCLL  157 (437)
Q Consensus        80 g~~~iv~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~Tp-Lh~A~~~g~~~iv~~Ll  157 (437)
                      |+.+++++|++.+++..   | ..|.||||+|+++|+.++++.|++.++++ +.+|..|.|| ||+|+..|+.+++++|+
T Consensus       139 g~~eivk~LL~~~~~~~---d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~-n~~d~~g~t~~L~~Aa~~~~~e~v~lLl  214 (284)
T PHA02791        139 NDVSIVSYFLSEIPSTF---DLAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDLEMLQALF  214 (284)
T ss_pred             CCHHHHHHHHhcCCccc---ccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHH
Confidence            99999999999887643   3 35899999999999999999999999886 8899999987 99999999999999999


Q ss_pred             cccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcc
Q 013760          158 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  198 (437)
Q Consensus       158 ~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~  198 (437)
                      + .|+++|.+|.+| |+|      ++.|++++|+++-++..
T Consensus       215 ~-~Ga~in~~~~~~-~~l------~~~e~~~~ll~~~~~~~  247 (284)
T PHA02791        215 K-YDINIYSVNLEN-VLL------DDAEIAKMIIEKHVEYK  247 (284)
T ss_pred             H-CCCCCccCcccC-ccC------CCHHHHHHHHHhhhhhc
Confidence            9 899999999965 665      78899999999887654

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=6.4e-30  Score=259.03  Aligned_cols=205  Identities=21%  Similarity=0.295  Sum_probs=187.7

Q ss_pred             hhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCH
Q 013760            3 MIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL   82 (437)
Q Consensus         3 ~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~   82 (437)
                      .|+.|+..|+ ++.++.|++..+...+..+.+|.||||.|+..|+.++|++|++.|+++ +..+..|.||||.|+..|+.
T Consensus         4 ~l~~ai~~gd-~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~-n~~~~~~~t~L~~A~~~~~~   81 (434)
T PHA02874          4 DLRMCIYSGD-IEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADI-NHINTKIPHPLLTAIKIGAH   81 (434)
T ss_pred             HHHHHHhcCC-HHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCH
Confidence            5889999999 999999999888877788889999999999999999999999999987 66788999999999999999


Q ss_pred             HHHHHHHhCCCCCC----------------------cccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChH
Q 013760           83 EVVKALVSKDPSTG----------------------FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA  140 (437)
Q Consensus        83 ~iv~~Ll~~~~~~~----------------------~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~Tp  140 (437)
                      +++++|++.+.+..                      ...|..|.||||+|+..|+.+++++|++.++++ +.+|.+|+||
T Consensus        82 ~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tp  160 (434)
T PHA02874         82 DIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYP  160 (434)
T ss_pred             HHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCH
Confidence            99999998876532                      234788999999999999999999999999886 8899999999


Q ss_pred             HHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHH
Q 013760          141 LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  211 (437)
Q Consensus       141 Lh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  211 (437)
                      ||+|+..|+.+++++|++ .|++++..|..|.||||+|+..|+.+++++|++.|++.......+.++....
T Consensus       161 Lh~A~~~~~~~iv~~Ll~-~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A  230 (434)
T PHA02874        161 IHIAIKHNFFDIIKLLLE-KGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA  230 (434)
T ss_pred             HHHHHHCCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHH
Confidence            999999999999999999 8999999999999999999999999999999999999887777777766544

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=5.8e-30  Score=262.88  Aligned_cols=204  Identities=25%  Similarity=0.309  Sum_probs=136.2

Q ss_pred             chhhH-----HHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHH--HcCCHHHHHHHHhcCCchhHhhhcCCCcHHH
Q 013760            2 DMIHF-----MWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAA--AQGHIDVVNFLLEIDSNLAKIARNNGKTVLH   74 (437)
Q Consensus         2 t~Lh~-----A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa--~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh   74 (437)
                      ||||.     |+..|+ .++++.|++.+++. +..|..|.||||+|+  ..|+.+++++|++.|+++ +..+.+|.||||
T Consensus        70 t~L~~~~~~~a~~~~~-~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~  146 (480)
T PHA03100         70 TPLHYLSNIKYNLTDV-KEIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLH  146 (480)
T ss_pred             CHHHHHHHHHHHhhch-HHHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHH
Confidence            56666     666666 66666666666554 455666666666666  666666666666666665 455666666666


Q ss_pred             HHHHcC--CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCC------ChHHHHHHH
Q 013760           75 SAARMG--HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKG------NTALHIAIK  146 (437)
Q Consensus        75 ~Aa~~g--~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G------~TpLh~A~~  146 (437)
                      +|+..|  +.+++++|++.|++++.. |..|.||||+|+..|+.+++++|++.|+++ +..+..|      .||||.|+.
T Consensus       147 ~A~~~~~~~~~iv~~Ll~~g~din~~-d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~t~l~~a~~  224 (480)
T PHA03100        147 LYLESNKIDLKILKLLIDKGVDINAK-NRYGYTPLHIAVEKGNIDVIKFLLDNGADI-NAGDIETLLFTIFETPLHIAAC  224 (480)
T ss_pred             HHHHcCCChHHHHHHHHHCCCCcccc-cCCCCCHHHHHHHhCCHHHHHHHHHcCCCc-cCCCCCCCcHHHHHhHHHHHHH
Confidence            666666  666666666666665543 556666666666666666666666666554 5555556      666666666


Q ss_pred             cCc--HHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHH
Q 013760          147 KGR--TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  211 (437)
Q Consensus       147 ~g~--~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  211 (437)
                      .|+  .+++++|++ .|+++|.+|..|.||||+|+..++.+++++|++.|++.+..+..+.++....
T Consensus       225 ~~~~~~~iv~~Ll~-~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A  290 (480)
T PHA03100        225 YNEITLEVVNYLLS-YGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIA  290 (480)
T ss_pred             hCcCcHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence            666  777777776 6777777777777777777777777777777777777766666666665443

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=6.2e-30  Score=262.66  Aligned_cols=192  Identities=24%  Similarity=0.364  Sum_probs=180.5

Q ss_pred             CchhhHHH--HcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCchhHhhhcCCCcHHHHH
Q 013760            1 MDMIHFMW--QQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQG--HIDVVNFLLEIDSNLAKIARNNGKTVLHSA   76 (437)
Q Consensus         1 ~t~Lh~A~--~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~A   76 (437)
                      +||||.|+  ..|+ .++++.|++.+.+ .+..|..|.||||+|+..|  +.+++++|+++|+++ +.+|.+|.||||+|
T Consensus       107 ~tpL~~A~~~~~~~-~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL~~A  183 (480)
T PHA03100        107 ITPLLYAISKKSNS-YSIVEYLLDNGAN-VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTPLHIA  183 (480)
T ss_pred             CchhhHHHhcccCh-HHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCHHHHH
Confidence            48999999  9999 9999999999877 4568899999999999999  999999999999997 67888999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCcccCCCC------CcHHHHHHhCCC--HHHHHHhhcCCCCccccCCCCCChHHHHHHHcC
Q 013760           77 ARMGHLEVVKALVSKDPSTGFRTDKKG------QTALHMAVKGQN--EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG  148 (437)
Q Consensus        77 a~~g~~~iv~~Ll~~~~~~~~~~d~~g------~t~Lh~A~~~g~--~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g  148 (437)
                      +..|+.+++++|++.|++.... +..|      .||||.|+..|+  .+++++|++.|.++ +.+|.+|+||||+|+..|
T Consensus       184 ~~~~~~~iv~~Ll~~ga~~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~TpL~~A~~~~  261 (480)
T PHA03100        184 VEKGNIDVIKFLLDNGADINAG-DIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPI-NIKDVYGFTPLHYAVYNN  261 (480)
T ss_pred             HHhCCHHHHHHHHHcCCCccCC-CCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence            9999999999999999998754 7777      899999999999  99999999998876 889999999999999999


Q ss_pred             cHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcc
Q 013760          149 RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  198 (437)
Q Consensus       149 ~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~  198 (437)
                      +.+++++|++ .|+|+|.+|..|.||+++|+..++.+++++|+++|++..
T Consensus       262 ~~~iv~~Ll~-~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        262 NPEFVKYLLD-LGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             CHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHH
Confidence            9999999999 899999999999999999999999999999999999764

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=2.2e-29  Score=254.24  Aligned_cols=205  Identities=18%  Similarity=0.216  Sum_probs=172.0

Q ss_pred             CchhhHHHH--cCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHH
Q 013760            1 MDMIHFMWQ--QSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR   78 (437)
Q Consensus         1 ~t~Lh~A~~--~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~   78 (437)
                      +++||.++.  .++ .++++.|++++.+ ++.+|.+|.||||+|+..|+.++|++|+++|+++ +.+|.+|.||||+|+.
T Consensus        38 ~~~Lh~~~~~~~~~-~~iv~~Ll~~Gad-vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~~g~TpLh~A~~  114 (446)
T PHA02946         38 YHILHAYCGIKGLD-ERFVEELLHRGYS-PNETDDDGNYPLHIASKINNNRIVAMLLTHGADP-NACDKQHKTPLYYLSG  114 (446)
T ss_pred             ChHHHHHHHhcCCC-HHHHHHHHHCcCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHH
Confidence            367887763  446 7899999998877 4678899999999999999999999999999887 6788999999999988


Q ss_pred             cCC--HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcC--cHHHHH
Q 013760           79 MGH--LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG--RTQIVR  154 (437)
Q Consensus        79 ~g~--~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g--~~~iv~  154 (437)
                      .++  .+++++|++++++.+...|.+|.|||| |+..|+.++++.|++.+.++ +.+|..|+||||+|+..+  +.++++
T Consensus       115 ~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~  192 (446)
T PHA02946        115 TDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTIS  192 (446)
T ss_pred             cCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHH
Confidence            664  788999999999887666888999997 66678899999999888776 888999999999988754  468899


Q ss_pred             HhhcccCCCccccccCCCCHHHHHHHcC--cHHHHHHHHHcCCCcccCCCCCCChHHHHH
Q 013760          155 CLLSIEGIDVNSLNKAGESPLDVAEKLG--NTELFSLLKEAGAAHSKDHGKPPSATKQLK  212 (437)
Q Consensus       155 ~Ll~~~g~~~n~~n~~G~T~L~~A~~~~--~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  212 (437)
                      +|++ .|++++.+|.+|.||||+|+..+  +.+++++|++ |++.+..+..+.+|.....
T Consensus       193 ~Ll~-~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~  250 (446)
T PHA02946        193 WMMK-LGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLI  250 (446)
T ss_pred             HHHH-cCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHH
Confidence            9998 89999999999999999999875  7788888885 8888888888888776543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=7.6e-30  Score=256.05  Aligned_cols=201  Identities=27%  Similarity=0.325  Sum_probs=168.7

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCC----cccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCch--------------hH
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFP----NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL--------------AK   63 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~----~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~--------------~~   63 (437)
                      +|+|.|+++|. .|+.+.++.+.+    ..++..|..|.||||.|+..|+.++++.+|+.+...              .+
T Consensus       189 ~~iH~aa~s~s-~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~  267 (929)
T KOG0510|consen  189 FPIHEAARSGS-KECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVN  267 (929)
T ss_pred             chHHHHHHhcc-hhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhh
Confidence            45566666666 666666655322    123456778899999999999999999999876542              22


Q ss_pred             hhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhc-CCCCccccCCCCCChHHH
Q 013760           64 IARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR-PDPSVLKLEDNKGNTALH  142 (437)
Q Consensus        64 ~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~G~TpLh  142 (437)
                      ..|++|.||||+||+.|+.+.++.|+..|.+...+ ++++.||||.|+.+|+.++|+.|++ .+..++|..|..|+||||
T Consensus       268 ~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~k-n~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLH  346 (929)
T KOG0510|consen  268 DEDNDGCTPLHYAARQGGPESVDNLLGFGASINSK-NKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLH  346 (929)
T ss_pred             cccccCCchHHHHHHcCChhHHHHHHHcCCccccc-CCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchh
Confidence            35789999999999999999999999999998865 8999999999999999999999999 677788999999999999


Q ss_pred             HHHHcCcHHHHHHhhcccCCCcc---ccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCC
Q 013760          143 IAIKKGRTQIVRCLLSIEGIDVN---SLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPP  205 (437)
Q Consensus       143 ~A~~~g~~~iv~~Ll~~~g~~~n---~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~  205 (437)
                      +|++.|+..+++.|++ .|++.+   ..|.+|+||||.|++.|+..+++.|+.+|++....++.+.
T Consensus       347 laa~~gH~~v~qlLl~-~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~  411 (929)
T KOG0510|consen  347 LAAKSGHDRVVQLLLN-KGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGK  411 (929)
T ss_pred             hhhhcCHHHHHHHHHh-cChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeecccccc
Confidence            9999999999999999 788766   5699999999999999999999999999999855444443

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=2.5e-29  Score=253.84  Aligned_cols=190  Identities=23%  Similarity=0.249  Sum_probs=170.4

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCchhHhhhcCCCcHHHHHHH
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQG--HIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR   78 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~   78 (437)
                      +||||+|+..|+ .++++.|++++.+ ++.+|.+|.||||+|+..+  ..+++++|+++|+++....|.+|.|||| ||.
T Consensus        73 ~TpLh~Aa~~g~-~eiv~lLL~~GAd-in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~  149 (446)
T PHA02946         73 NYPLHIASKINN-NRIVAMLLTHGAD-PNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACT  149 (446)
T ss_pred             CCHHHHHHHcCC-HHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHH
Confidence            589999999999 9999999999876 4578999999999999876  4899999999999986567899999998 677


Q ss_pred             cCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCC--CHHHHHHhhcCCCCccccCCCCCChHHHHHHHcC--cHHHHH
Q 013760           79 MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ--NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG--RTQIVR  154 (437)
Q Consensus        79 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g--~~~iv~  154 (437)
                      .|+.++++.|++.+.+... .|+.|+||||.|+..+  +.+++++|++.|.++ +.+|.+|+||||+|+..+  +.++++
T Consensus       150 ~~~~~vv~~Ll~~gad~~~-~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi-n~~d~~G~TpLH~Aa~~~~~~~~iv~  227 (446)
T PHA02946        150 DPSERVFKKIMSIGFEARI-VDKFGKNHIHRHLMSDNPKASTISWMMKLGISP-SKPDHDGNTPLHIVCSKTVKNVDIIN  227 (446)
T ss_pred             CCChHHHHHHHhccccccc-cCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCCcHHHHH
Confidence            7999999999999998875 4999999999988754  468999999999887 899999999999999986  789999


Q ss_pred             HhhcccCCCccccccCCCCHHHHHHHcCc-HHHHHHHHHcCCCc
Q 013760          155 CLLSIEGIDVNSLNKAGESPLDVAEKLGN-TELFSLLKEAGAAH  197 (437)
Q Consensus       155 ~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~-~~i~~~L~~~ga~~  197 (437)
                      +|++  |+++|.+|..|.||||+|++.++ .+++++|+++|+..
T Consensus       228 lLl~--gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~  269 (446)
T PHA02946        228 LLLP--STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVI  269 (446)
T ss_pred             HHHc--CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCC
Confidence            9885  79999999999999999999988 48999999998764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.4e-29  Score=229.07  Aligned_cols=173  Identities=21%  Similarity=0.281  Sum_probs=151.5

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCchhHhhh-cCCCcHHHHHH
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQG--HIDVVNFLLEIDSNLAKIAR-NNGKTVLHSAA   77 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~~-~~G~tpLh~Aa   77 (437)
                      +||||.|+..|+ ++.|+.|++.    .+..|..|.||||+|+..+  +.+++++|++.|+++ +.++ .+|.||||+|+
T Consensus        22 ~~pL~~A~~~~~-~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a~   95 (209)
T PHA02859         22 CNPLFYYVEKDD-IEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHHYL   95 (209)
T ss_pred             CcHHHHHHHhCc-HHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHHH
Confidence            689999999999 9999999975    3457889999999999854  899999999999998 4454 58999999987


Q ss_pred             Hc---CCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHh--CCCHHHHHHhhcCCCCccccCCCCCChHHHH-HHHcCcHH
Q 013760           78 RM---GHLEVVKALVSKDPSTGFRTDKKGQTALHMAVK--GQNEDIVLELIRPDPSVLKLEDNKGNTALHI-AIKKGRTQ  151 (437)
Q Consensus        78 ~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~--~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~-A~~~g~~~  151 (437)
                      ..   ++.+++++|++++++++. +|.+|.||||+|+.  .++.+++++|++.+.++ +.+|.+|+||||. |+..++.+
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadin~-~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadi-n~~d~~g~t~Lh~~a~~~~~~~  173 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSITE-EDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSF-LNKDFDNNNILYSYILFHSDKK  173 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc-ccccCCCCcHHHHHHHhcCCHH
Confidence            64   479999999999999875 49999999999886  46899999999999886 8899999999996 56678999


Q ss_pred             HHHHhhcccCCCccccccCCCCHHHHHHHcC
Q 013760          152 IVRCLLSIEGIDVNSLNKAGESPLDVAEKLG  182 (437)
Q Consensus       152 iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~  182 (437)
                      ++++|++ .|++++.+|..|.||||+|...+
T Consensus       174 iv~~Ll~-~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        174 IFDFLTS-LGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHH-cCCCCCCCCCCCCCHHHHHhhhh
Confidence            9999999 89999999999999999997643

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=3.7e-28  Score=243.99  Aligned_cols=173  Identities=33%  Similarity=0.422  Sum_probs=159.2

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCc--------------ccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhc
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPN--------------LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN   67 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~--------------~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   67 (437)
                      ||||.|+..|+ +++++.+|+.+..              +++..|.+|+||||+||+.|+.++++.|+..|++. +.++.
T Consensus       227 ~pLhlAve~g~-~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~  304 (929)
T KOG0510|consen  227 TPLHLAVEGGD-IEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI-NSKNK  304 (929)
T ss_pred             cchhhhhhcCC-HHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc-cccCC
Confidence            79999999999 9999999987532              44567999999999999999999999999999998 78899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHh-CCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccc--cCCCCCChHHHHH
Q 013760           68 NGKTVLHSAARMGHLEVVKALVS-KDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLK--LEDNKGNTALHIA  144 (437)
Q Consensus        68 ~G~tpLh~Aa~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~--~~d~~G~TpLh~A  144 (437)
                      ++.||||.||+.|+.+.|+.|++ .+.-.....|-.|.||||+|+++|+..+++.|++.|+...+  ..|.+|+||||+|
T Consensus       305 d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~A  384 (929)
T KOG0510|consen  305 DEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLA  384 (929)
T ss_pred             CCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHH
Confidence            99999999999999999999999 55555556688999999999999999999999999998866  5599999999999


Q ss_pred             HHcCcHHHHHHhhcccCCCccccccCCCCHHHH
Q 013760          145 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV  177 (437)
Q Consensus       145 ~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~  177 (437)
                      +.+|+..++++|+. +|+++..+|+.|.+++++
T Consensus       385 a~~g~~~av~~Li~-~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  385 AKYGNTSAVQKLIS-HGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             HHhccHHHHHHHHH-cCCceeeccccccccccc
Confidence            99999999999999 899999999999999995

>PHA03095 ankyrin-like protein; Provisional

Probab=99.96  E-value=9.6e-29  Score=253.23  Aligned_cols=206  Identities=23%  Similarity=0.277  Sum_probs=145.4

Q ss_pred             CchhhHHHHcC---CcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcC-CHHHHHHHHhcCCchhHhhhcCCCcHHHHH
Q 013760            1 MDMIHFMWQQS---RVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQG-HIDVVNFLLEIDSNLAKIARNNGKTVLHSA   76 (437)
Q Consensus         1 ~t~Lh~A~~~g---~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g-~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~A   76 (437)
                      .||||.|+..|   + .++++.|++.+.+ ++.+|..|.||||+|+..| +.+++++|++.|+++ +.+|.+|.||||+|
T Consensus        48 ~t~Lh~a~~~~~~~~-~~iv~~Ll~~Gad-in~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~~g~tpLh~a  124 (471)
T PHA03095         48 KTPLHLYLHYSSEKV-KDIVRLLLEAGAD-VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADV-NAKDKVGRTPLHVY  124 (471)
T ss_pred             CCHHHHHHHhcCCCh-HHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            37888888877   7 7888888877766 3456677888888888888 478888888887776 56777788888888


Q ss_pred             H--HcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCC--CHHHHHHhhcCCCCcc----------------------
Q 013760           77 A--RMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ--NEDIVLELIRPDPSVL----------------------  130 (437)
Q Consensus        77 a--~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~----------------------  130 (437)
                      +  ..++.+++++|++.|+++... |..|.||||+|+..+  +.++++.|++.+.++.                      
T Consensus       125 ~~~~~~~~~iv~~Ll~~gad~~~~-d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~  203 (471)
T PHA03095        125 LSGFNINPKVIRLLLRKGADVNAL-DLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRAR  203 (471)
T ss_pred             hhCCcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHH
Confidence            7  455677777777777776543 666777777666544  3455555555544331                      


Q ss_pred             ------------ccCCCCCChHHHHHHHcCcH--HHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCC
Q 013760          131 ------------KLEDNKGNTALHIAIKKGRT--QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA  196 (437)
Q Consensus       131 ------------~~~d~~G~TpLh~A~~~g~~--~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~  196 (437)
                                  +.+|.+|+||||+|+..|+.  .+++.|++ .|+++|.+|..|.||||+|+..|+.+++++|++.|++
T Consensus       204 i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~-~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad  282 (471)
T PHA03095        204 IVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLI-AGISINARNRYGQTPLHYAAVFNNPRACRRLIALGAD  282 (471)
T ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                        44555566666666655543  45566666 6788888888888888888888888888888888888


Q ss_pred             cccCCCCCCChHHHH
Q 013760          197 HSKDHGKPPSATKQL  211 (437)
Q Consensus       197 ~~~~~~~~~~~~~~~  211 (437)
                      +...+..+.++....
T Consensus       283 ~n~~~~~g~tpl~~A  297 (471)
T PHA03095        283 INAVSSDGNTPLSLM  297 (471)
T ss_pred             CcccCCCCCCHHHHH
Confidence            877777777666543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=3.1e-29  Score=267.78  Aligned_cols=207  Identities=28%  Similarity=0.335  Sum_probs=176.6

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHH-------------------------------------
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAA-------------------------------------   43 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa-------------------------------------   43 (437)
                      +||||.|+..|+ .|+|+.|++.+|++....|..|.||||+|+                                     
T Consensus        42 ~t~LH~A~~~g~-~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  120 (682)
T PHA02876         42 FTAIHQALQLRQ-IDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEA  120 (682)
T ss_pred             chHHHHHHHHHh-hhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHH
Confidence            689999999999 999999999999988889999999999766                                     


Q ss_pred             ---------------------------------HcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHh
Q 013760           44 ---------------------------------AQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVS   90 (437)
Q Consensus        44 ---------------------------------~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~   90 (437)
                                                       ..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.++|++|++
T Consensus       121 ~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gadv-n~~d~~G~TpLh~Aa~~G~~~iv~~LL~  199 (682)
T PHA02876        121 CIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADV-NAKDIYCITPIHYAAERGNAKMVNLLLS  199 (682)
T ss_pred             HHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence                                             457889999999999998 6789999999999999999999999999


Q ss_pred             CCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCC----------------------------ccccCCCCCChHHH
Q 013760           91 KDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS----------------------------VLKLEDNKGNTALH  142 (437)
Q Consensus        91 ~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~----------------------------~~~~~d~~G~TpLh  142 (437)
                      .|++.... +.+|.||||+|+..|+.++++.|++.+..                            .++..|..|+||||
T Consensus       200 ~Gad~n~~-~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh  278 (682)
T PHA02876        200 YGADVNII-ALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLH  278 (682)
T ss_pred             CCCCcCcc-CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            99988754 78889999999999888888777654432                            13667788999999


Q ss_pred             HHHHcCcH-HHHHHhhcccCCCccccccCCCCHHHHHHHcC-cHHHHHHHHHcCCCcccCCCCCCChHHHH
Q 013760          143 IAIKKGRT-QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG-NTELFSLLKEAGAAHSKDHGKPPSATKQL  211 (437)
Q Consensus       143 ~A~~~g~~-~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~-~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  211 (437)
                      +|+..++. +++++|++ .|++++.+|.+|.||||+|+..| ..+++++|+..|++.+..+..+.++....
T Consensus       279 ~Aa~~~~~~~iv~lLl~-~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A  348 (682)
T PHA02876        279 HASQAPSLSRLVPKLLE-RGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQA  348 (682)
T ss_pred             HHHhCCCHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHH
Confidence            99988875 58888887 78899999999999999999888 58888888888888877666666655443

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=3.6e-29  Score=246.83  Aligned_cols=177  Identities=32%  Similarity=0.461  Sum_probs=162.0

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +|+||.||.+++ ++++++|++++.+....--.-|.||||+|+++|+..+|++|+++|+++ +.+|.+|.+|||.|+..|
T Consensus        79 ~tlLHWAAiNNr-l~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~  156 (600)
T KOG0509|consen   79 VTLLHWAAINNR-LDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFG  156 (600)
T ss_pred             ccceeHHHHcCc-HHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhC
Confidence            479999999999 999999999998854333377899999999999999999999999998 889999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhccc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  160 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  160 (437)
                      +.-+|-+|+.++.+.+. +|.+|+||||+|+..|....+..|++-++.+.-..|.+|+||||+|+..|+..++.+|++ .
T Consensus       157 ~~~~vayll~~~~d~d~-~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~-g  234 (600)
T KOG0509|consen  157 HTALVAYLLSKGADIDL-RDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLE-G  234 (600)
T ss_pred             chHHHHHHHHhcccCCC-cCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhh-c
Confidence            99999999999988875 499999999999999999889999999888855556999999999999999999995555 8


Q ss_pred             CCCccccccCCCCHHHHHHHc
Q 013760          161 GIDVNSLNKAGESPLDVAEKL  181 (437)
Q Consensus       161 g~~~n~~n~~G~T~L~~A~~~  181 (437)
                      |++.+.+|.+|+||+++|.+.
T Consensus       235 ~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  235 GADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             CCcccccccCCCCHHHHHHHh
Confidence            999999999999999999876

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.8e-28  Score=251.87  Aligned_cols=193  Identities=21%  Similarity=0.294  Sum_probs=118.4

Q ss_pred             HHHHHHHHhhCCcccccCCCCCCcHHHHHHHc-----CCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC---CHHHH
Q 013760           14 ILVLKELLGEFPNLVMTTDLSCSTALHTAAAQ-----GHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG---HLEVV   85 (437)
Q Consensus        14 ~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~-----g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g---~~~iv   85 (437)
                      .++++.|++.+.+ ++..|..|.||||.|+..     ++.+++++|+++|+++ +.+|.+|.||||+|+.+|   +.+++
T Consensus        51 ~~iv~~Ll~~Gad-vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~~~iv  128 (489)
T PHA02798         51 TDIVKLFINLGAN-VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI-NKKNSDGETPLYCLLSNGYINNLEIL  128 (489)
T ss_pred             HHHHHHHHHCCCC-CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcChHHHH
Confidence            6666666666654 345566666666666542     4566666666666665 455666666666666654   45666


Q ss_pred             HHHHhCCCCCCcccCCCCCcHHHHHHhCCC---HHHHHHhhcCCCCccccC-CCCCChHHHHHHHc----CcHHHHHHhh
Q 013760           86 KALVSKDPSTGFRTDKKGQTALHMAVKGQN---EDIVLELIRPDPSVLKLE-DNKGNTALHIAIKK----GRTQIVRCLL  157 (437)
Q Consensus        86 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~---~~iv~~Ll~~~~~~~~~~-d~~G~TpLh~A~~~----g~~~iv~~Ll  157 (437)
                      ++|+++|+++... |.+|.||||+|++.++   .++++.|++.|.++ +.+ +..|.||||.++..    ++.+++++|+
T Consensus       129 ~~Ll~~Gadvn~~-d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi-n~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li  206 (489)
T PHA02798        129 LFMIENGADTTLL-DKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI-NTHNNKEKYDTLHCYFKYNIDRIDADILKLFV  206 (489)
T ss_pred             HHHHHcCCCcccc-CCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCc-ccccCcCCCcHHHHHHHhccccCCHHHHHHHH
Confidence            6666666665533 6666666666666665   66666666666554 333 34556666665543    2455555555


Q ss_pred             cccC---------------------------------------CCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcc
Q 013760          158 SIEG---------------------------------------IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  198 (437)
Q Consensus       158 ~~~g---------------------------------------~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~  198 (437)
                      + .|                                       +|+|.+|..|.||||+|+..++.+++++|++.|++.+
T Consensus       207 ~-~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin  285 (489)
T PHA02798        207 D-NGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDIN  285 (489)
T ss_pred             H-CCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCccc
Confidence            4 22                                       3455667777777777777777777777777777777


Q ss_pred             cCCCCCCChHHHH
Q 013760          199 KDHGKPPSATKQL  211 (437)
Q Consensus       199 ~~~~~~~~~~~~~  211 (437)
                      ..+..+.++....
T Consensus       286 ~~d~~G~TpL~~A  298 (489)
T PHA02798        286 IITELGNTCLFTA  298 (489)
T ss_pred             ccCCCCCcHHHHH
Confidence            6666666665543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=4e-28  Score=249.66  Aligned_cols=195  Identities=18%  Similarity=0.276  Sum_probs=105.7

Q ss_pred             HHHHHHHHhhCCcccccCCCCCCcHHHHHHHcC------CHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHc---CCHHH
Q 013760           14 ILVLKELLGEFPNLVMTTDLSCSTALHTAAAQG------HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM---GHLEV   84 (437)
Q Consensus        14 ~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g------~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~---g~~~i   84 (437)
                      .++|+.|++.+.+.. ..+ .+.||||.|+..+      +.+++++|+++|+++ +.+|.+|.||||.|+..   |+.++
T Consensus        50 ~~iv~~Ll~~GAdvn-~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~~ei  126 (494)
T PHA02989         50 IKIVKLLIDNGADVN-YKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADI-NLKTFNGVSPIVCFIYNSNINNCDM  126 (494)
T ss_pred             hHHHHHHHHcCCCcc-CCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCcHHH
Confidence            455555555544422 222 3455555554332      244555555555554 44455555555544433   34455


Q ss_pred             HHHHHhCCCCCCcccCCCCCcHHHHHHhC--CCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcC----cHHHHHHhhc
Q 013760           85 VKALVSKDPSTGFRTDKKGQTALHMAVKG--QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG----RTQIVRCLLS  158 (437)
Q Consensus        85 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~--g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g----~~~iv~~Ll~  158 (437)
                      +++|+++|++++...|..|.||||+|+..  ++.++++.|++.|+++....|..|.||||.|+..+    +.+++++|++
T Consensus       127 v~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~  206 (494)
T PHA02989        127 LRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIK  206 (494)
T ss_pred             HHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHh
Confidence            55555555554222345555555554432  34455555555554442113445555555554432    4455555444


Q ss_pred             ccC--------------------------------------CCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccC
Q 013760          159 IEG--------------------------------------IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD  200 (437)
Q Consensus       159 ~~g--------------------------------------~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~  200 (437)
                       .|                                      +++|.+|..|.||||+|+..++.+++++|++.|++.+..
T Consensus       207 -~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~  285 (494)
T PHA02989        207 -KGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNV  285 (494)
T ss_pred             -CCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcccc
Confidence             33                                      445566677888888888888888888888888888777


Q ss_pred             CCCCCChHHHHH
Q 013760          201 HGKPPSATKQLK  212 (437)
Q Consensus       201 ~~~~~~~~~~~~  212 (437)
                      +..+.++.....
T Consensus       286 d~~G~TpL~~A~  297 (494)
T PHA02989        286 SKDGDTVLTYAI  297 (494)
T ss_pred             CCCCCCHHHHHH
Confidence            777777665543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.4e-27  Score=244.51  Aligned_cols=202  Identities=22%  Similarity=0.243  Sum_probs=181.1

Q ss_pred             hHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcC---CHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC-
Q 013760            5 HFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQG---HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG-   80 (437)
Q Consensus         5 h~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g---~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g-   80 (437)
                      ..++..++ +++++.|++.+.+ ++..|..|.||||+|+..|   +.+++++|++.|+++ +.++.+|.||||+|+..| 
T Consensus        19 ~~~~~~~~-~~~v~~Ll~~ga~-vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi-n~~~~~g~TpLh~A~~~~~   95 (471)
T PHA03095         19 LLNASNVT-VEEVRRLLAAGAD-VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPERCGFTPLHLYLYNAT   95 (471)
T ss_pred             HHcCCCCC-HHHHHHHHHcCCC-cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCC
Confidence            46778889 9999999999877 4578999999999999999   999999999999998 678889999999999999 


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHH--hCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcC--cHHHHHHh
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAV--KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG--RTQIVRCL  156 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~--~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g--~~~iv~~L  156 (437)
                      +.+++++|++.|++++.. |..|.||||+|+  ..++.++++.|++.|+++ +.+|.+|.||||+|+..+  +.+++++|
T Consensus        96 ~~~iv~lLl~~ga~in~~-~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~L  173 (471)
T PHA03095         96 TLDVIKLLIKAGADVNAK-DKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLL  173 (471)
T ss_pred             cHHHHHHHHHcCCCCCCC-CCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHHH
Confidence            599999999999998754 899999999999  567899999999999886 889999999999998866  68999999


Q ss_pred             hcccCCCccccccCCCCHHHHHHHc--CcHHHHHHHHHcCCCcccCCCCCCChHHHHH
Q 013760          157 LSIEGIDVNSLNKAGESPLDVAEKL--GNTELFSLLKEAGAAHSKDHGKPPSATKQLK  212 (437)
Q Consensus       157 l~~~g~~~n~~n~~G~T~L~~A~~~--~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  212 (437)
                      ++ .|++++..|..|.||||.++..  +..++++.|+++|+++...+..+.++.....
T Consensus       174 l~-~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa  230 (471)
T PHA03095        174 ID-AGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMA  230 (471)
T ss_pred             HH-cCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            99 8999999999999999998875  6788999999999999888888887776544

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.2e-27  Score=245.12  Aligned_cols=159  Identities=30%  Similarity=0.336  Sum_probs=141.9

Q ss_pred             cCCCC-CCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHH
Q 013760           30 TTDLS-CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALH  108 (437)
Q Consensus        30 ~~d~~-g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh  108 (437)
                      ..|.. |.||||+|+..|+.+++++|++.|+++ +..|.+|.||||.|+..|+.++++.|++.|++.... |..|.||||
T Consensus       162 ~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~-d~~g~TpLh  239 (477)
T PHA02878        162 MKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDAR-DKCGNTPLH  239 (477)
T ss_pred             ccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCC-CCCCCCHHH
Confidence            45566 999999999999999999999999987 678999999999999999999999999999998854 999999999


Q ss_pred             HHHhC-CCHHHHHHhhcCCCCccccCCC-CCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcC-cHH
Q 013760          109 MAVKG-QNEDIVLELIRPDPSVLKLEDN-KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG-NTE  185 (437)
Q Consensus       109 ~A~~~-g~~~iv~~Ll~~~~~~~~~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~-~~~  185 (437)
                      +|+.. ++.++++.|+++|+++ +.++. .|+||||+|  .++.+++++|++ .|+|+|..|..|.||||+|+..+ ..+
T Consensus       240 ~A~~~~~~~~iv~~Ll~~gadv-n~~~~~~g~TpLh~A--~~~~~~v~~Ll~-~gadin~~d~~g~TpL~~A~~~~~~~~  315 (477)
T PHA02878        240 ISVGYCKDYDILKLLLEHGVDV-NAKSYILGLTALHSS--IKSERKLKLLLE-YGADINSLNSYKLTPLSSAVKQYLCIN  315 (477)
T ss_pred             HHHHhcCCHHHHHHHHHcCCCC-CccCCCCCCCHHHHH--ccCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHHcCccc
Confidence            99975 7899999999999887 66665 899999999  577899999999 89999999999999999999754 456


Q ss_pred             HHHHHHHcC
Q 013760          186 LFSLLKEAG  194 (437)
Q Consensus       186 i~~~L~~~g  194 (437)
                      +.++|+..+
T Consensus       316 ~~~~li~~~  324 (477)
T PHA02878        316 IGRILISNI  324 (477)
T ss_pred             hHHHHHHHH
Confidence            677766553

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=7.5e-28  Score=251.20  Aligned_cols=195  Identities=18%  Similarity=0.213  Sum_probs=144.8

Q ss_pred             HcCCcHHHHHHHHhhC-CcccccC-CCCCCcHHHHHHH--cCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC--H
Q 013760            9 QQSRVILVLKELLGEF-PNLVMTT-DLSCSTALHTAAA--QGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH--L   82 (437)
Q Consensus         9 ~~g~~~~~vk~Ll~~~-~~~~~~~-d~~g~TpLh~Aa~--~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~--~   82 (437)
                      +.++ .+++++|++.+ .+. +.. |..|.||||.|+.  .++.+++++|++.|+++ +.+|.+|.||||+|+..|+  .
T Consensus       151 ~~v~-leiVk~LLe~G~ADI-N~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADV-N~kD~~G~TPLH~Aa~~g~~~~  227 (764)
T PHA02716        151 RGID-LDLIKYMVDVGIVNL-NYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNV-NLQNNHLITPLHTYLITGNVCA  227 (764)
T ss_pred             cCCC-HHHHHHHHHCCCCCc-ccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCCCH
Confidence            4577 78888888777 543 344 7778888887654  35677888888887776 5677778888888888774  4


Q ss_pred             HHHHHHHhCCCCCCcccCCCCCcHHHHH-------------------------------------HhCCCHHHHHHhhcC
Q 013760           83 EVVKALVSKDPSTGFRTDKKGQTALHMA-------------------------------------VKGQNEDIVLELIRP  125 (437)
Q Consensus        83 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A-------------------------------------~~~g~~~iv~~Ll~~  125 (437)
                      +++++|++.|++++.. |..|+||||.|                                     +++|+.++++.|++.
T Consensus       228 eIVklLLe~GADVN~k-D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~  306 (764)
T PHA02716        228 SVIKKIIELGGDMDMK-CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP  306 (764)
T ss_pred             HHHHHHHHcCCCCCCC-CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC
Confidence            7788888888777654 77788888754                                     445778888888888


Q ss_pred             CCCccccCCCCCChHHHHHHH--cCcHHHHHHhhcccCCCccccccCCCCHHHHHHH--------------cCcHHHHHH
Q 013760          126 DPSVLKLEDNKGNTALHIAIK--KGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK--------------LGNTELFSL  189 (437)
Q Consensus       126 ~~~~~~~~d~~G~TpLh~A~~--~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~--------------~~~~~i~~~  189 (437)
                      |+++ +.+|.+|+||||+|+.  .++.+++++|++ .|+++|.+|..|+||||+|+.              .++.+++++
T Consensus       307 GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe-~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVkl  384 (764)
T PHA02716        307 GVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHE-YGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQC  384 (764)
T ss_pred             CCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHH-cCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHH
Confidence            7775 7788888888887654  456788888887 788888888888888887754              256788888


Q ss_pred             HHHcCCCcccCCCCCCChHH
Q 013760          190 LKEAGAAHSKDHGKPPSATK  209 (437)
Q Consensus       190 L~~~ga~~~~~~~~~~~~~~  209 (437)
                      |+++|++....+..+.+|..
T Consensus       385 LL~~GADIn~kn~~G~TPLh  404 (764)
T PHA02716        385 LISLGADITAVNCLGYTPLT  404 (764)
T ss_pred             HHHCCCCCCCcCCCCCChHH
Confidence            88888888777777777664

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2e-27  Score=253.83  Aligned_cols=206  Identities=22%  Similarity=0.241  Sum_probs=180.0

Q ss_pred             CchhhHHHHcCCcH-HHHHHHHhhCCcccccCCCCCCcHHHHHHHcC-CHHHHHHHHhcCCchhHhhhcCCCcHHHHHHH
Q 013760            1 MDMIHFMWQQSRVI-LVLKELLGEFPNLVMTTDLSCSTALHTAAAQG-HIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR   78 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~-~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g-~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~   78 (437)
                      .||||.|+..|+ . ++++.|++.+.+ .+..|.+|.||||+|+..| +.++++.|++.|+++ +..|..|.||||+|+.
T Consensus       274 ~TpLh~Aa~~~~-~~~iv~lLl~~gad-in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~~g~TpLh~A~~  350 (682)
T PHA02876        274 NTPLHHASQAPS-LSRLVPKLLERGAD-VNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV-NAADRLYITPLHQAST  350 (682)
T ss_pred             CCHHHHHHhCCC-HHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC-CCcccCCCcHHHHHHH
Confidence            489999999998 6 588888887766 4578889999999999999 599999999999887 6788999999999998


Q ss_pred             c-CCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCc-HHHHHHh
Q 013760           79 M-GHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR-TQIVRCL  156 (437)
Q Consensus        79 ~-g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~-~~iv~~L  156 (437)
                      . ++.++++.|++.+.+++.. |..|.||||+|+..|+.++++.|++.++++ +..+..|.||||+|+..++ ..++++|
T Consensus       351 ~~~~~~iv~lLl~~gadin~~-d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~-~~~~~~g~T~Lh~A~~~~~~~~~vk~L  428 (682)
T PHA02876        351 LDRNKDIVITLLELGANVNAR-DYCDKTPIHYAAVRNNVVIINTLLDYGADI-EALSQKIGTALHFALCGTNPYMSVKTL  428 (682)
T ss_pred             hCCcHHHHHHHHHcCCCCccC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-cccCCCCCchHHHHHHcCCHHHHHHHH
Confidence            5 5788999999999998754 899999999999999999999999998886 7889999999999987665 4678889


Q ss_pred             hcccCCCccccccCCCCHHHHHHHcC-cHHHHHHHHHcCCCcccCCCCCCChHHHHH
Q 013760          157 LSIEGIDVNSLNKAGESPLDVAEKLG-NTELFSLLKEAGAAHSKDHGKPPSATKQLK  212 (437)
Q Consensus       157 l~~~g~~~n~~n~~G~T~L~~A~~~~-~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  212 (437)
                      ++ .|+++|.+|..|+||||+|+..+ +.+++++|++.|++.+..+..+.++.....
T Consensus       429 l~-~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~  484 (682)
T PHA02876        429 ID-RGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIAL  484 (682)
T ss_pred             Hh-CCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            88 89999999999999999999876 689999999999999888888877765443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1.6e-28  Score=232.95  Aligned_cols=186  Identities=27%  Similarity=0.377  Sum_probs=167.1

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCC---cccc-----cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHH
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFP---NLVM-----TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL   73 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~---~~~~-----~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpL   73 (437)
                      |||-+||++|| .++|++|+++..   +.-.     -...+|-+||..|+..||+++|+.|+++|+++ +.......|||
T Consensus        44 tPL~iaaRnGH-~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPL  121 (615)
T KOG0508|consen   44 TPLLIAARNGH-ADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRTNSTPL  121 (615)
T ss_pred             CceeeehhcCc-HHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc-ccccccCCccH
Confidence            79999999999 999999999643   2111     12457889999999999999999999999888 44555678999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHH
Q 013760           74 HSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV  153 (437)
Q Consensus        74 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv  153 (437)
                      ..||.-||.++|++|+++++|+... |+.|.|+||+||..|+.+++++|++.++++ |.++..|||+||.+++.|+.+++
T Consensus       122 raACfDG~leivKyLvE~gad~~Ia-nrhGhTcLmIa~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~caEsG~vdiv  199 (615)
T KOG0508|consen  122 RAACFDGHLEIVKYLVEHGADPEIA-NRHGHTCLMIACYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCAESGSVDIV  199 (615)
T ss_pred             HHHHhcchhHHHHHHHHcCCCCccc-ccCCCeeEEeeeccCchHHHHHHHHhCCCc-chhcccCchHHHhhhhcccHHHH
Confidence            9999999999999999999999865 999999999999999999999999999997 99999999999999999999999


Q ss_pred             HHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHc
Q 013760          154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  193 (437)
Q Consensus       154 ~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~  193 (437)
                      ++|+. +|+.++. |..|.|||..|...|+.++++.|+..
T Consensus       200 q~Ll~-~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  200 QLLLK-HGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             HHHHh-CCceeee-cCCCCchHHHHhhhcchHHHHHHhcC
Confidence            99999 7887765 55699999999999999999999973

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=2.3e-27  Score=247.54  Aligned_cols=187  Identities=24%  Similarity=0.330  Sum_probs=161.5

Q ss_pred             CchhhHHHHc--CCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCC--HHHHHHHHhcCCchhHhhhcCCCcHHHHH
Q 013760            1 MDMIHFMWQQ--SRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGH--IDVVNFLLEIDSNLAKIARNNGKTVLHSA   76 (437)
Q Consensus         1 ~t~Lh~A~~~--g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~--~~iv~~Ll~~~~~~~~~~~~~G~tpLh~A   76 (437)
                      .||||.|+.+  ++ .+++++|++.+.+ ++..|.+|.||||+|+..|+  .++|++|++.|+++ +.+|.+|.||||.|
T Consensus       178 ~TpLH~A~~n~~~~-~eIVklLLe~GAD-VN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh~A  254 (764)
T PHA02716        178 YGILHAYLGNMYVD-IDILEWLCNNGVN-VNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIMTY  254 (764)
T ss_pred             CcHHHHHHHhccCC-HHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            4899998754  68 8999999999877 55789999999999999995  59999999999997 77899999999975


Q ss_pred             -------------------------------------HHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHh--CCCHH
Q 013760           77 -------------------------------------ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVK--GQNED  117 (437)
Q Consensus        77 -------------------------------------a~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~--~g~~~  117 (437)
                                                           +..|+.+++++|++.|++++.. |.+|+||||+|+.  +++.+
T Consensus       255 i~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~k-D~~G~TPLH~Aaa~~~~~~e  333 (764)
T PHA02716        255 IINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYK-DSAGRTCLHQYILRHNISTD  333 (764)
T ss_pred             HHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceecc-CCCCCCHHHHHHHHhCCCch
Confidence                                                 4568889999999999998754 9999999999764  56889


Q ss_pred             HHHHhhcCCCCccccCCCCCChHHHHHHH--------------cCcHHHHHHhhcccCCCccccccCCCCHHHHHHHc--
Q 013760          118 IVLELIRPDPSVLKLEDNKGNTALHIAIK--------------KGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL--  181 (437)
Q Consensus       118 iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~--------------~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~--  181 (437)
                      ++++|++.|.++ +.+|..|+||||+|+.              .++.+++++|++ .|+|++.+|..|.|||     .  
T Consensus       334 IVklLLe~GADI-N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~-~GADIn~kn~~G~TPL-----h~y  406 (764)
T PHA02716        334 IIKLLHEYGNDL-NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLIS-LGADITAVNCLGYTPL-----TSY  406 (764)
T ss_pred             HHHHHHHcCCCC-ccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHH-CCCCCCCcCCCCCChH-----HHH
Confidence            999999999876 8999999999999875              368899999999 8999999999999994     3  


Q ss_pred             -------CcHHHHHHHHHcCCCcc
Q 013760          182 -------GNTELFSLLKEAGAAHS  198 (437)
Q Consensus       182 -------~~~~i~~~L~~~ga~~~  198 (437)
                             ++.+++++|++.|+...
T Consensus       407 ~~~a~n~~~~dIvklLis~~~~~~  430 (764)
T PHA02716        407 ICTAQNYMYYDIIDCLISDKVLNM  430 (764)
T ss_pred             HHHHHhcChHHHHHHHHhCcchhh
Confidence                   23578889998876543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.4e-26  Score=238.02  Aligned_cols=194  Identities=18%  Similarity=0.253  Sum_probs=175.2

Q ss_pred             CchhhHHHHc-----CCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcC---CHHHHHHHHhcCCchhHhhhcCCCcH
Q 013760            1 MDMIHFMWQQ-----SRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQG---HIDVVNFLLEIDSNLAKIARNNGKTV   72 (437)
Q Consensus         1 ~t~Lh~A~~~-----g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g---~~~iv~~Ll~~~~~~~~~~~~~G~tp   72 (437)
                      .||||.|+.+     ++ .++++.|++.+.+ ++..|.+|.||||+|+..|   +.+++++|+++|+++ +..|.+|.||
T Consensus        72 ~TpL~~~~~n~~~~~~~-~~iv~~Ll~~Gad-iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tp  148 (489)
T PHA02798         72 STPLCTILSNIKDYKHM-LDIVKILIENGAD-INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTM  148 (489)
T ss_pred             CChHHHHHHhHHhHHhH-HHHHHHHHHCCCC-CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcH
Confidence            4899999875     77 8999999999887 5678999999999999986   789999999999998 7899999999


Q ss_pred             HHHHHHcCC---HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhC----CCHHHHHHhhcCCCCc----------------
Q 013760           73 LHSAARMGH---LEVVKALVSKDPSTGFRTDKKGQTALHMAVKG----QNEDIVLELIRPDPSV----------------  129 (437)
Q Consensus        73 Lh~Aa~~g~---~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~----g~~~iv~~Ll~~~~~~----------------  129 (437)
                      ||+|+..|+   .+++++|+++|+++....+..|.||||.++..    ++.+++++|+++|.++                
T Consensus       149 L~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~  228 (489)
T PHA02798        149 LQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLN  228 (489)
T ss_pred             HHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHH
Confidence            999999998   99999999999998766567899999999764    4899999999876422                


Q ss_pred             ----------------------cccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHH
Q 013760          130 ----------------------LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF  187 (437)
Q Consensus       130 ----------------------~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~  187 (437)
                                            +|.+|..|+||||+|+..|+.+++++|++ .|+|+|.+|..|+|||+.|+..++.+++
T Consensus       229 ~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~-~GAdin~~d~~G~TpL~~A~~~~~~~iv  307 (489)
T PHA02798        229 SLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQ-LGGDINIITELGNTCLFTAFENESKFIF  307 (489)
T ss_pred             HHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHH-cCCcccccCCCCCcHHHHHHHcCcHHHH
Confidence                                  35678899999999999999999999999 8999999999999999999999999999


Q ss_pred             HHHHHcCCCcc
Q 013760          188 SLLKEAGAAHS  198 (437)
Q Consensus       188 ~~L~~~ga~~~  198 (437)
                      +.|++.+++..
T Consensus       308 ~~lL~~~~~~~  318 (489)
T PHA02798        308 NSILNKKPNKN  318 (489)
T ss_pred             HHHHccCCCHH
Confidence            99999988764

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.8e-26  Score=237.32  Aligned_cols=193  Identities=19%  Similarity=0.245  Sum_probs=169.9

Q ss_pred             CchhhHHHHcC------CcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCchhHhhhcCCCc
Q 013760            1 MDMIHFMWQQS------RVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQ---GHIDVVNFLLEIDSNLAKIARNNGKT   71 (437)
Q Consensus         1 ~t~Lh~A~~~g------~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~~G~t   71 (437)
                      .||||.|+.++      + .++++.|++.+.+ ++.+|.+|.||||.|+..   |+.+++++|+++|+++.+.+|..|.|
T Consensus        70 ~tpL~~a~~~~~~~~~~~-~~iv~~Ll~~Gad-in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~t  147 (494)
T PHA02989         70 ETPLCAVLRNREITSNKI-KKIVKLLLKFGAD-INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYN  147 (494)
T ss_pred             CCcHHHHHhccCcchhhH-HHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCC
Confidence            38999998765      4 6899999999887 567899999999988765   68999999999999985678899999


Q ss_pred             HHHHHHHc--CCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCC----CHHHHHHhhcCCCCc----------------
Q 013760           72 VLHSAARM--GHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ----NEDIVLELIRPDPSV----------------  129 (437)
Q Consensus        72 pLh~Aa~~--g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g----~~~iv~~Ll~~~~~~----------------  129 (437)
                      |||+|+..  ++.+++++|++.|+++....+..|.||||+|+.++    +.+++++|++.|.++                
T Consensus       148 pLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~  227 (494)
T PHA02989        148 LLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLD  227 (494)
T ss_pred             HHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHH
Confidence            99998764  68999999999999987655788999999998764    899999999999764                


Q ss_pred             ---------------------cccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHH
Q 013760          130 ---------------------LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS  188 (437)
Q Consensus       130 ---------------------~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~  188 (437)
                                           ++.+|.+|+||||+|+..|+.+++++|++ .|+|+|.+|..|.||||+|+..++.++++
T Consensus       228 ~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~-~Gadin~~d~~G~TpL~~A~~~~~~~iv~  306 (494)
T PHA02989        228 NNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLK-LGDDIYNVSKDGDTVLTYAIKHGNIDMLN  306 (494)
T ss_pred             hchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence                                 13456779999999999999999999999 89999999999999999999999999999


Q ss_pred             HHHHcCCC
Q 013760          189 LLKEAGAA  196 (437)
Q Consensus       189 ~L~~~ga~  196 (437)
                      .|++.++.
T Consensus       307 ~LL~~~p~  314 (494)
T PHA02989        307 RILQLKPG  314 (494)
T ss_pred             HHHhcCCC
Confidence            99987653

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.3e-26  Score=208.36  Aligned_cols=175  Identities=17%  Similarity=0.222  Sum_probs=153.7

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCcccCCCCCcHHH
Q 013760           31 TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG--HLEVVKALVSKDPSTGFRTDKKGQTALH  108 (437)
Q Consensus        31 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh  108 (437)
                      ....++||||.|+..|+.++|+.|++..    +..|..|.||||+|+.++  +.+++++|++.+++++...+..|.||||
T Consensus        17 ~~~~~~~pL~~A~~~~~~~~vk~Li~~~----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh   92 (209)
T PHA02859         17 LFYRYCNPLFYYVEKDDIEGVKKWIKFV----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALH   92 (209)
T ss_pred             HhhccCcHHHHHHHhCcHHHHHHHHHhh----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHH
Confidence            3567899999999999999999999752    457889999999999865  8999999999999998663468999999


Q ss_pred             HHHhC---CCHHHHHHhhcCCCCccccCCCCCChHHHHHHH--cCcHHHHHHhhcccCCCccccccCCCCHHHH-HHHcC
Q 013760          109 MAVKG---QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK--KGRTQIVRCLLSIEGIDVNSLNKAGESPLDV-AEKLG  182 (437)
Q Consensus       109 ~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~--~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~-A~~~~  182 (437)
                      +|+..   ++.++++.|++++.++ +.+|.+|.||||.|+.  .++.+++++|++ .|++++.+|.+|.||||. +...+
T Consensus        93 ~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~-~gadin~~d~~g~t~Lh~~a~~~~  170 (209)
T PHA02859         93 HYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLID-SGVSFLNKDFDNNNILYSYILFHS  170 (209)
T ss_pred             HHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHH-cCCCcccccCCCCcHHHHHHHhcC
Confidence            98753   5799999999998887 8999999999999986  468999999998 899999999999999996 56678


Q ss_pred             cHHHHHHHHHcCCCcccCCCCCCChHHHH
Q 013760          183 NTELFSLLKEAGAAHSKDHGKPPSATKQL  211 (437)
Q Consensus       183 ~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  211 (437)
                      +.+++++|+++|++....+..+.++....
T Consensus       171 ~~~iv~~Ll~~Gadi~~~d~~g~tpl~la  199 (209)
T PHA02859        171 DKKIFDFLTSLGIDINETNKSGYNCYDLI  199 (209)
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            99999999999999988888887776543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=7.4e-26  Score=222.11  Aligned_cols=188  Identities=17%  Similarity=0.095  Sum_probs=166.8

Q ss_pred             HHHHcCCcHHHHHHHHhhCCccc-----ccCCCCCCcHHHHHHH--cCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHH
Q 013760            6 FMWQQSRVILVLKELLGEFPNLV-----MTTDLSCSTALHTAAA--QGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR   78 (437)
Q Consensus         6 ~A~~~g~~~~~vk~Ll~~~~~~~-----~~~d~~g~TpLh~Aa~--~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~   78 (437)
                      +|+..+. .|+++.|+.++.+..     -..+.+++|+||.|+.  .|+.++|++|+++|+++ +.  .++.||||.|+.
T Consensus        83 ~~~~~~~-k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~--~~~~t~lh~A~~  158 (437)
T PHA02795         83 LFAYITY-KDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YK--IECLNAYFRGIC  158 (437)
T ss_pred             HHhhcch-HHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CC--CCCCCHHHHHHH
Confidence            6788888 999999999987632     1477889999999999  99999999999999998 33  356899999999


Q ss_pred             cCCHHHHHHHHhCCCCCCcccC-----CCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHH
Q 013760           79 MGHLEVVKALVSKDPSTGFRTD-----KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV  153 (437)
Q Consensus        79 ~g~~~iv~~Ll~~~~~~~~~~d-----~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv  153 (437)
                      .|+.+++++|+++|.+.....+     ..|.|++|.|+.+++.++++.|+++|+++ |.+|.+|+||||+|+..|+.+++
T Consensus       159 ~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI-N~kD~~G~TpLh~Aa~~g~~eiV  237 (437)
T PHA02795        159 KKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI-NQLDAGGRTLLYRAIYAGYIDLV  237 (437)
T ss_pred             cCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc-CcCCCCCCCHHHHHHHcCCHHHH
Confidence            9999999999999975433321     34789999999999999999999999887 99999999999999999999999


Q ss_pred             HHhhcccCCCccccccCCCCHHHHHHHcCc--------HHHHHHHHHcCCCccc
Q 013760          154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGN--------TELFSLLKEAGAAHSK  199 (437)
Q Consensus       154 ~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~--------~~i~~~L~~~ga~~~~  199 (437)
                      ++|++ .|+++|.+|..|.||||+|+..|+        .+++++|+++|++...
T Consensus       238 elLL~-~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        238 SWLLE-NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             HHHHH-CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence            99999 899999999999999999999884        6899999999997754

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=1.8e-25  Score=242.37  Aligned_cols=168  Identities=27%  Similarity=0.335  Sum_probs=81.1

Q ss_pred             hhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCH
Q 013760            3 MIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL   82 (437)
Q Consensus         3 ~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~   82 (437)
                      +||.||..|+ .++++.|++.+.+ .+..|.+|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..||.
T Consensus       528 ~L~~Aa~~g~-~~~l~~Ll~~G~d-~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~~~g~~  604 (823)
T PLN03192        528 NLLTVASTGN-AALLEELLKAKLD-PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAISAKHH  604 (823)
T ss_pred             HHHHHHHcCC-HHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHHhCCH
Confidence            4445555555 5555555544433 2334445555555555555555555555544443 34444455555555555555


Q ss_pred             HHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCC
Q 013760           83 EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI  162 (437)
Q Consensus        83 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~  162 (437)
                      ++++.|++.+....   +..|.++||.|+.+|+.++++.|++.|.++ |.+|.+|+||||+|+..|+.+++++|++ .|+
T Consensus       605 ~iv~~L~~~~~~~~---~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~-~GA  679 (823)
T PLN03192        605 KIFRILYHFASISD---PHAAGDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQGATALQVAMAEDHVDMVRLLIM-NGA  679 (823)
T ss_pred             HHHHHHHhcCcccC---cccCchHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHHHHHHHHH-cCC
Confidence            55555544433321   223444555555555555555555544443 4445555555555555555555555554 445


Q ss_pred             CccccccCC-CCHHHHH
Q 013760          163 DVNSLNKAG-ESPLDVA  178 (437)
Q Consensus       163 ~~n~~n~~G-~T~L~~A  178 (437)
                      |++..|..| .||++++
T Consensus       680 dv~~~~~~g~~t~~~l~  696 (823)
T PLN03192        680 DVDKANTDDDFSPTELR  696 (823)
T ss_pred             CCCCCCCCCCCCHHHHH
Confidence            555555444 4444444

>PF13962 PGG: Domain of unknown function

Probab=99.93  E-value=6e-26  Score=185.27  Aligned_cols=112  Identities=35%  Similarity=0.515  Sum_probs=95.5

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHhHhhccCCCccccccccCCcccccccccCc-ceeehhhhhHHHHHHHHHHHHHhhhhc
Q 013760          248 ISGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNA-AFIIFFVFDSLALFISLAVVVVQTSVV  326 (437)
Q Consensus       248 ~e~lk~a~~s~~vva~Liatv~f~a~~t~PGg~~~~~~~~~~~g~~~~~~~~-~f~~F~~~~~~a~~~S~~~v~~~~si~  326 (437)
                      +||++++++++++||+|||||||+|+||||||+|||++   ..|.|++.+++ .|++|+++|++||++|+++++++++.+
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~---~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDD---DAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc---CCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47889999999999999999999999999999999862   67999999888 899999999999999999998887422


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhee
Q 013760          327 VIEEKAKRQLVFVINKLMWLACLFISIAFISLTYVV  362 (437)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~v  362 (437)
                      ....+.++........+||+++.+|++||++|+|+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            111223334566778999999999999999999976

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=6.1e-26  Score=215.51  Aligned_cols=197  Identities=28%  Similarity=0.364  Sum_probs=168.0

Q ss_pred             HHHHcCCcHHHHHHHHhhCC--cc--cccCCCCCCcHHHHHHHcCCHHHHHHHHhcC-CchhHhh--------hcCCCcH
Q 013760            6 FMWQQSRVILVLKELLGEFP--NL--VMTTDLSCSTALHTAAAQGHIDVVNFLLEID-SNLAKIA--------RNNGKTV   72 (437)
Q Consensus         6 ~A~~~g~~~~~vk~Ll~~~~--~~--~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~-~~~~~~~--------~~~G~tp   72 (437)
                      -|++.|+ +..+..|+....  ++  .-..+.+|.|||-+||++||.++|++|+++. +++ .+.        .-+|-+|
T Consensus        10 naa~~g~-l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~-e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen   10 NAARDGK-LQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASP-EQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHhhhhh-HHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCc-cCCceEEeCCcccCCCch
Confidence            5788888 777777776532  11  1124668999999999999999999999953 332 222        2368899


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHH
Q 013760           73 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI  152 (437)
Q Consensus        73 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~i  152 (437)
                      |..|+-.||.++|+.|++++++++.. .....|||-.||..|+.+++++|+++++++ +..|..|.|.||+|+.+|+.+|
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~VN~t-T~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I  165 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGASVNDT-TRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDI  165 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCccccc-cccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHH
Confidence            99999999999999999999888754 566779999999999999999999999887 8999999999999999999999


Q ss_pred             HHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChH
Q 013760          153 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSAT  208 (437)
Q Consensus       153 v~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~  208 (437)
                      +++|++ .|+|+|.++..|+|+||.+++.|+.+++++|+.+|+....+.. +.+|.
T Consensus       166 ~qyLle-~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~-GmtPL  219 (615)
T KOG0508|consen  166 AQYLLE-QGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGH-GMTPL  219 (615)
T ss_pred             HHHHHH-hCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCC-CCchH
Confidence            999999 8999999999999999999999999999999999999876654 44443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.93  E-value=4.4e-25  Score=231.45  Aligned_cols=189  Identities=21%  Similarity=0.264  Sum_probs=157.6

Q ss_pred             CchhhHHHHc---CCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHH----HHHHHHhcCCchhHhhhcCCCcHH
Q 013760            1 MDMIHFMWQQ---SRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHID----VVNFLLEIDSNLAKIARNNGKTVL   73 (437)
Q Consensus         1 ~t~Lh~A~~~---g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~----iv~~Ll~~~~~~~~~~~~~G~tpL   73 (437)
                      .||||.|+..   |+ .++++.|++.+.+. +..|.+|.||||.|+..|+.+    +++.|++.+... +..+  ..+++
T Consensus        33 ~t~Lh~a~~~~~~~~-~~~v~~Ll~~ga~v-~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~-n~~~--~~~~~  107 (661)
T PHA02917         33 NNALHAYLFNEHCNN-VEVVKLLLDSGTNP-LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS-NIND--FNIFS  107 (661)
T ss_pred             CcHHHHHHHhhhcCc-HHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC-CCCC--cchHH
Confidence            4899997555   89 99999999998775 468999999999999999954    567888764332 2222  34778


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHH--HhCCCHHHHHHhhcCCCCccccCC---CCC-----------
Q 013760           74 HSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA--VKGQNEDIVLELIRPDPSVLKLED---NKG-----------  137 (437)
Q Consensus        74 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~g~~~iv~~Ll~~~~~~~~~~d---~~G-----------  137 (437)
                      |+|+.+|+.+++++|+++|.+++.. |.+|+||||.|  +.+|+.+++++|+++|+++ +..|   ..|           
T Consensus       108 ~~a~~~~~~e~vk~Ll~~Gadin~~-d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~~~~~~~~~  185 (661)
T PHA02917        108 YMKSKNVDVDLIKVLVEHGFDLSVK-CENHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEYGYAYDDYQPRNC  185 (661)
T ss_pred             HHHhhcCCHHHHHHHHHcCCCCCcc-CCCCccHHHHHHHccCCCHHHHHHHHHcCCCc-ccccccccccccccccccccc
Confidence            8899999999999999999999865 89999999954  4678999999999999887 4443   334           


Q ss_pred             ChHHHHHHH-----------cCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcH--HHHHHHHHcCCCcc
Q 013760          138 NTALHIAIK-----------KGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT--ELFSLLKEAGAAHS  198 (437)
Q Consensus       138 ~TpLh~A~~-----------~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~--~i~~~L~~~ga~~~  198 (437)
                      .||||+|+.           .++.+++++|++ .|+|+|.+|.+|.||||+|+..|+.  +++++|++ |++..
T Consensus       186 ~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~-~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~  257 (661)
T PHA02917        186 GTVLHLYIISHLYSESDTRAYVRPEVVKCLIN-HGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNT  257 (661)
T ss_pred             ccHHHHHHhhcccccccccccCcHHHHHHHHH-CCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccc
Confidence            599999986           468999999999 8999999999999999999999985  79999975 87653

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.92  E-value=4.2e-25  Score=234.80  Aligned_cols=202  Identities=28%  Similarity=0.401  Sum_probs=119.4

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +||+|.|+..|. .+.++.+++++.+ .+..+.+|.||||.|+..++.++|+.+++.+++. +..+..|.||+|+|+..|
T Consensus       375 ~~pl~la~~~g~-~~~v~Lll~~ga~-~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~-~~~~~lG~T~lhvaa~~g  451 (1143)
T KOG4177|consen  375 FTPLHLAVKSGR-VSVVELLLEAGAD-PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP-NAKAKLGYTPLHVAAKKG  451 (1143)
T ss_pred             CcchhhhcccCc-hhHHHhhhhccCC-cccCCCCCcceeeehhhccCcceEEEEeccCCCh-hhHhhcCCChhhhhhhcc
Confidence            467788888887 7777777777655 4455666666666666666666666666665554 445555555555555555


Q ss_pred             -CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhc---------------------------------CC
Q 013760           81 -HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR---------------------------------PD  126 (437)
Q Consensus        81 -~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~---------------------------------~~  126 (437)
                       ..++...+++.+.+.+.. -+.|.||||+|+..|+.+++..+++                                 ++
T Consensus       452 ~~~~~~~~l~~~g~~~n~~-s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~g  530 (1143)
T KOG4177|consen  452 RYLQIARLLLQYGADPNAV-SKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHG  530 (1143)
T ss_pred             cHhhhhhhHhhcCCCcchh-ccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcC
Confidence             445555555554444432 4445555555555554444444433                                 22


Q ss_pred             CCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCC
Q 013760          127 PSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPS  206 (437)
Q Consensus       127 ~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~  206 (437)
                      .. ++.++..|+||||.|+.+|+..+|++|++ +|+|++.+++.|+||||.|+..|+.+|+++|.++|++++..+.++.+
T Consensus       531 a~-v~~~~~r~~TpLh~A~~~g~v~~VkfLLe-~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~T  608 (1143)
T KOG4177|consen  531 AN-VDLRTGRGYTPLHVAVHYGNVDLVKFLLE-HGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFT  608 (1143)
T ss_pred             Cc-eehhcccccchHHHHHhcCCchHHHHhhh-CCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcc
Confidence            22 24455566666666666666666666666 56666666666666666666666666666666666666555555444


Q ss_pred             hH
Q 013760          207 AT  208 (437)
Q Consensus       207 ~~  208 (437)
                      +.
T Consensus       609 pL  610 (1143)
T KOG4177|consen  609 PL  610 (1143)
T ss_pred             hh
Confidence            43

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=8.4e-24  Score=229.38  Aligned_cols=168  Identities=25%  Similarity=0.325  Sum_probs=154.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHH
Q 013760           31 TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA  110 (437)
Q Consensus        31 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  110 (437)
                      .+.++.++||.||..|+.++++.|++.|.++ +..|.+|.||||+||..|+.++++.|++++++++. +|.+|.||||.|
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~-~d~~G~TpL~~A  598 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHI-RDANGNTALWNA  598 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCC-cCCCCCCHHHHH
Confidence            4556789999999999999999999999997 77999999999999999999999999999999875 499999999999


Q ss_pred             HhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHH
Q 013760          111 VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL  190 (437)
Q Consensus       111 ~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L  190 (437)
                      +..|+.++++.|++.+...   .+..|.++||.|+..|+.++++.|++ .|+|+|.+|.+|.||||+|+..|+.+++++|
T Consensus       599 ~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~-~Gadin~~d~~G~TpLh~A~~~g~~~iv~~L  674 (823)
T PLN03192        599 ISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLK-QGLNVDSEDHQGATALQVAMAEDHVDMVRLL  674 (823)
T ss_pred             HHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHHHHHHH
Confidence            9999999999999766433   34568899999999999999999999 8999999999999999999999999999999


Q ss_pred             HHcCCCcccCCCCC
Q 013760          191 KEAGAAHSKDHGKP  204 (437)
Q Consensus       191 ~~~ga~~~~~~~~~  204 (437)
                      +++|++.+..+..+
T Consensus       675 l~~GAdv~~~~~~g  688 (823)
T PLN03192        675 IMNGADVDKANTDD  688 (823)
T ss_pred             HHcCCCCCCCCCCC
Confidence            99999998776655

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.92  E-value=2.1e-24  Score=229.60  Aligned_cols=191  Identities=31%  Similarity=0.401  Sum_probs=162.4

Q ss_pred             CchhhHHHHcC-CcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHc
Q 013760            1 MDMIHFMWQQS-RVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM   79 (437)
Q Consensus         1 ~t~Lh~A~~~g-~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~   79 (437)
                      +||+|+|+..| . .+....++.. +...+..-..|.||||.|+..||.++++.|++.++.. +...+.|.+++|.|+..
T Consensus       441 ~T~lhvaa~~g~~-~~~~~~l~~~-g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~~~l~~lhla~~~  517 (1143)
T KOG4177|consen  441 YTPLHVAAKKGRY-LQIARLLLQY-GADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAKKGLTPLHLAADE  517 (1143)
T ss_pred             CChhhhhhhcccH-hhhhhhHhhc-CCCcchhccccCcchhhhhccCCchHHHHhhhcCCcc-Cccchhccchhhhhhhh
Confidence            47888888888 4 5555444444 3445566778888888888888888888888877554 44566788888888888


Q ss_pred             CCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcc
Q 013760           80 GHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI  159 (437)
Q Consensus        80 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  159 (437)
                      ++..+++.+++.+.+.... +..|.||||.|+.+|+.++|++|+++++++ +.+|+.|+||||.|+..|+.+++.+|++ 
T Consensus       518 ~~v~~~~~l~~~ga~v~~~-~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv-~ak~~~G~TPLH~Aa~~G~~~i~~LLlk-  594 (1143)
T KOG4177|consen  518 DTVKVAKILLEHGANVDLR-TGRGYTPLHVAVHYGNVDLVKFLLEHGADV-NAKDKLGYTPLHQAAQQGHNDIAELLLK-  594 (1143)
T ss_pred             hhHHHHHHHhhcCCceehh-cccccchHHHHHhcCCchHHHHhhhCCccc-cccCCCCCChhhHHHHcChHHHHHHHHH-
Confidence            8888888888888887654 888999999999999999999999999987 8899999999999999999999999999 


Q ss_pred             cCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCc
Q 013760          160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  197 (437)
Q Consensus       160 ~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~  197 (437)
                      +|+++|..|.+|.|||+.|...|..++++.|+..+++.
T Consensus       595 ~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  595 HGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             cCCCCCcccccCcchhHHHHHhcccchhhHHHhccCcc
Confidence            99999999999999999999999999999999999983

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=1.2e-24  Score=217.30  Aligned_cols=216  Identities=25%  Similarity=0.297  Sum_probs=189.2

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      ||+||.|+.+|+ .+++++|++..+- ...+|..|.+|||+|+..|+.|+++.++..+..+ +..+..|.||||.|+..|
T Consensus        50 fTalhha~Lng~-~~is~llle~ea~-ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaqhg  126 (854)
T KOG0507|consen   50 FTLLHHAVLNGQ-NQISKLLLDYEAL-LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQHG  126 (854)
T ss_pred             hhHHHHHHhcCc-hHHHHHHhcchhh-hhhhhccCcceEEehhhcCcchHHHHHHhcccCC-CcccccCcCccchhhhhc
Confidence            699999999999 9999999998764 3457789999999999999999999999998554 677888999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCc-------cccCCCCCChHHHHHHHcCcHHHH
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV-------LKLEDNKGNTALHIAIKKGRTQIV  153 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~-------~~~~d~~G~TpLh~A~~~g~~~iv  153 (437)
                      |.+++.+|++++.+.... |..+.|+|-+|++.|+.++++.|++..-..       ...++..+-+|||+|+++|+.+++
T Consensus       127 h~dvv~~Ll~~~adp~i~-nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~  205 (854)
T KOG0507|consen  127 HLEVVFYLLKKNADPFIR-NNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECM  205 (854)
T ss_pred             chHHHHHHHhcCCCcccc-CcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHH
Confidence            999999999999999865 999999999999999999999998762110       123566788999999999999999


Q ss_pred             HHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHHHHHhhhhhhhH
Q 013760          154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDV  222 (437)
Q Consensus       154 ~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (437)
                      +.|++ .|.|+|.....| |+||.|+..|..+++.+|++.|......+..+++..+.+.+.......+.
T Consensus       206 ~~ll~-ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~ei  272 (854)
T KOG0507|consen  206 QALLE-AGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRYEI  272 (854)
T ss_pred             HHHHh-cCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhhhh
Confidence            99999 999999999998 99999999999999999999999999888888887777766555443333

>PHA02917 ankyrin-like protein; Provisional

Probab=99.91  E-value=3.7e-23  Score=216.97  Aligned_cols=193  Identities=17%  Similarity=0.142  Sum_probs=159.1

Q ss_pred             HHHHHHHHhhCCcccccCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHH----HHH
Q 013760           14 ILVLKELLGEFPNLVMTTDLSCSTALHTAAAQ---GHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE----VVK   86 (437)
Q Consensus        14 ~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~----iv~   86 (437)
                      +|.+|.|+.++.. .+..|.+|.||||+|+..   |+.++|++|++.|+++ +..+.+|.||||+|+..|+.+    +++
T Consensus        12 ~~~~~~l~~~~~~-~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v-~~~~~~g~TpL~~Aa~~g~~~v~~~~~~   89 (661)
T PHA02917         12 LDELKQMLRDRDP-NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP-LHKNWRQLTPLEEYTNSRHVKVNKDIAM   89 (661)
T ss_pred             HHHHHHHHhccCc-ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCChhHHHHHHH
Confidence            6788999975544 467899999999998665   8899999999999998 568899999999999999955    567


Q ss_pred             HHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHH--HcCcHHHHHHhhcccCCCc
Q 013760           87 ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI--KKGRTQIVRCLLSIEGIDV  164 (437)
Q Consensus        87 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~--~~g~~~iv~~Ll~~~g~~~  164 (437)
                      .|++.+...+ ..|  ..+++|+|+.+|+.+++++|+++|.++ +.+|.+|+||||.|+  ..|+.+++++|++ .|+++
T Consensus        90 ~Ll~~~~~~n-~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi~-~Ga~v  164 (661)
T PHA02917         90 ALLEATGYSN-IND--FNIFSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFIE-NGCSV  164 (661)
T ss_pred             HHHhccCCCC-CCC--cchHHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHHH-cCCCc
Confidence            7877644322 112  337788899999999999999999887 899999999999653  5789999999999 89999


Q ss_pred             cccccC---C-----------CCHHHHHHH-----------cCcHHHHHHHHHcCCCcccCCCCCCChHHHHHH
Q 013760          165 NSLNKA---G-----------ESPLDVAEK-----------LGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQ  213 (437)
Q Consensus       165 n~~n~~---G-----------~T~L~~A~~-----------~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~~  213 (437)
                      |..|..   |           .||||+|+.           .++.+++++|+++|++.+..+..+.+|.....+
T Consensus       165 n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~  238 (661)
T PHA02917        165 LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIK  238 (661)
T ss_pred             cccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHH
Confidence            876643   3           599999975           468899999999999999888888777665443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.90  E-value=4.2e-23  Score=202.77  Aligned_cols=185  Identities=18%  Similarity=0.193  Sum_probs=156.0

Q ss_pred             CchhhHHHH--cCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhh-----hcCCCcHH
Q 013760            1 MDMIHFMWQ--QSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIA-----RNNGKTVL   73 (437)
Q Consensus         1 ~t~Lh~A~~--~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~-----~~~G~tpL   73 (437)
                      .|+||.++.  .|+ .|+++.|++++.+.. .  .++.||||.|+..|+.+++++|+++|++..+..     +..|.||+
T Consensus       117 ~~~L~~~~~n~~n~-~eiV~~LI~~GADIn-~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l  192 (437)
T PHA02795        117 QDLLLYYLSNAYVE-IDIVDFMVDHGAVIY-K--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRG  192 (437)
T ss_pred             cHHHHHHHHhcCCC-HHHHHHHHHCCCCCC-C--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchh
Confidence            479999999  999 999999999998853 2  356899999999999999999999997543322     23588999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCc----
Q 013760           74 HSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR----  149 (437)
Q Consensus        74 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~----  149 (437)
                      |.|+..++.+++++|+++|++.+.. |..|.||||+|+..|+.+++++|++.|+++ +.+|.+|+||||+|+..|+    
T Consensus       193 ~~a~~~~~~eIve~LIs~GADIN~k-D~~G~TpLh~Aa~~g~~eiVelLL~~GAdI-N~~d~~G~TpLh~Aa~~g~~~~~  270 (437)
T PHA02795        193 FLVDEPTVLEIYKLCIPYIEDINQL-DAGGRTLLYRAIYAGYIDLVSWLLENGANV-NAVMSNGYTCLDVAVDRGSVIAR  270 (437)
T ss_pred             HHHHhcCHHHHHHHHHhCcCCcCcC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCcccc
Confidence            9999999999999999999998754 999999999999999999999999999887 9999999999999999984    


Q ss_pred             ----HHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCc
Q 013760          150 ----TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  197 (437)
Q Consensus       150 ----~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~  197 (437)
                          .+++++|++ .|++++..+..+   +..  ...+.++++.++++....
T Consensus       271 ~~~~~eIvelLL~-~gadI~~~~~~~---~~~--~~~n~~~ik~lI~y~~~l  316 (437)
T PHA02795        271 RETHLKILEILLR-EPLSIDCIKLAI---LNN--TIENHDVIKLCIKYFMMV  316 (437)
T ss_pred             cccHHHHHHHHHh-CCCCCCchhHHh---hhc--ccchHHHHHHHHHHHHhc
Confidence                699999998 888888754432   221  112678888888776543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=6.3e-24  Score=196.05  Aligned_cols=178  Identities=29%  Similarity=0.381  Sum_probs=158.0

Q ss_pred             HHHHHHHHhhC----Cc----ccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHc-----C
Q 013760           14 ILVLKELLGEF----PN----LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM-----G   80 (437)
Q Consensus        14 ~~~vk~Ll~~~----~~----~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~-----g   80 (437)
                      .+.|+..+..+    |.    .++..|.+|+|+||||+.+++.++|+.||+.|....+.+|.-|.||+++|+..     .
T Consensus       239 pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~  318 (452)
T KOG0514|consen  239 PEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPA  318 (452)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchh
Confidence            67777766653    22    24567999999999999999999999999999877788999999999999864     4


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhccc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  160 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  160 (437)
                      +.++|..|.+.|.. +.+-.+.|+|+|++|+.+|+.++|+.||.-++++ |.+|.+|-|+|+.|+++|+.||+++||..+
T Consensus       319 d~~vV~~LF~mgnV-NaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p  396 (452)
T KOG0514|consen  319 DRTVVERLFKMGDV-NAKASQHGQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVP  396 (452)
T ss_pred             hHHHHHHHHhccCc-chhhhhhcchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccC
Confidence            67899999988754 4455788999999999999999999999999887 999999999999999999999999999999


Q ss_pred             CCCccccccCCCCHHHHHHHcCcHHHHHHHHHc
Q 013760          161 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  193 (437)
Q Consensus       161 g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~  193 (437)
                      +.|....|.+|.|+|.+|...|+.+|.-+|-.+
T Consensus       397 ~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  397 SCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             cccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            999999999999999999999999998877544

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=9.9e-22  Score=211.82  Aligned_cols=184  Identities=25%  Similarity=0.246  Sum_probs=101.2

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCC-cccccCCCCCCcHHH-HHHHcCCHHHHHHHHhcCCchhHhhhcC-----------
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFP-NLVMTTDLSCSTALH-TAAAQGHIDVVNFLLEIDSNLAKIARNN-----------   68 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~-~~~~~~d~~g~TpLh-~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~-----------   68 (437)
                      ++|+.|++.|+ .+.++.+++..+ ...+..|..|.|||| .|+..++.++++.|++.+.     .+..           
T Consensus        19 ~~~l~A~~~g~-~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~~   92 (743)
T TIGR00870        19 KAFLPAAERGD-LASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISLE   92 (743)
T ss_pred             HHHHHHHHcCC-HHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHhc
Confidence            46777888888 888888887622 224566777888888 7777777888888877764     2333           


Q ss_pred             -----------------------------------CCcHHHHHHHcCCHHHHHHHHhCCCCCCccc-------------C
Q 013760           69 -----------------------------------GKTVLHSAARMGHLEVVKALVSKDPSTGFRT-------------D  100 (437)
Q Consensus        69 -----------------------------------G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~-------------d  100 (437)
                                                         |.||||+||..|+.++++.|+++|++++...             .
T Consensus        93 ~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~  172 (743)
T TIGR00870        93 YVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSF  172 (743)
T ss_pred             cHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcc
Confidence                                               5555555555555555555555555443210             1


Q ss_pred             CCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcC---------cHHHHHHhhcccCCC---c----
Q 013760          101 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG---------RTQIVRCLLSIEGID---V----  164 (437)
Q Consensus       101 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g---------~~~iv~~Ll~~~g~~---~----  164 (437)
                      ..|+||||.|+..|+.++++.|++.++++ +.+|..|+||||+|+..+         ..++.+++++ .+.+   .    
T Consensus       173 ~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~-ll~~~~~~~el~  250 (743)
T TIGR00870       173 YHGESPLNAAACLGSPSIVALLSEDPADI-LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALS-LLDKLRDSKELE  250 (743)
T ss_pred             cccccHHHHHHHhCCHHHHHHHhcCCcch-hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HHhccCChHhhh
Confidence            23555555555555555555555554433 455555555555555543         1122233332 2221   1    


Q ss_pred             cccccCCCCHHHHHHHcCcHHHHHHHHHc
Q 013760          165 NSLNKAGESPLDVAEKLGNTELFSLLKEA  193 (437)
Q Consensus       165 n~~n~~G~T~L~~A~~~~~~~i~~~L~~~  193 (437)
                      +..|.+|.||||+|+..|+.+++++|++.
T Consensus       251 ~i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       251 VILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             hhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence            34455555555555555555555555553

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02730 ankyrin-like protein; Provisional

Probab=99.90  E-value=6.4e-23  Score=210.58  Aligned_cols=189  Identities=16%  Similarity=0.222  Sum_probs=156.1

Q ss_pred             CchhhHHHHcC---CcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCch-hHhhhcCCCcHHH
Q 013760            1 MDMIHFMWQQS---RVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQG--HIDVVNFLLEIDSNL-AKIARNNGKTVLH   74 (437)
Q Consensus         1 ~t~Lh~A~~~g---~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g--~~~iv~~Ll~~~~~~-~~~~~~~G~tpLh   74 (437)
                      .||||+|+.+|   + .|+++.|++++.+. +..|.+|.||||+|+..|  +.|+|++|++.|++. .+..+..+.+|||
T Consensus        42 ~TaLh~A~~~~~~~~-~eivklLLs~GAdi-n~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~  119 (672)
T PHA02730         42 NNALHCYVSNKCDTD-IKIVRLLLSRGVER-LCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLY  119 (672)
T ss_pred             CcHHHHHHHcCCcCc-HHHHHHHHhCCCCC-cccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHH
Confidence            48999999996   7 89999999998874 578999999999999977  799999999996643 1336767899999


Q ss_pred             HHHH--cCCHHHHHHHHh-CCCCCCcccC----CCCCcHHHHHHhCCCHHHHHHhhcCCCCcc------ccCCCCCC-hH
Q 013760           75 SAAR--MGHLEVVKALVS-KDPSTGFRTD----KKGQTALHMAVKGQNEDIVLELIRPDPSVL------KLEDNKGN-TA  140 (437)
Q Consensus        75 ~Aa~--~g~~~iv~~Ll~-~~~~~~~~~d----~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~------~~~d~~G~-Tp  140 (437)
                      .++.  +++.+++++|++ .+.++....+    ..|.+|++++...++.|+|++|++.|+++-      ...|..+. |.
T Consensus       120 ~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~  199 (672)
T PHA02730        120 SYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNS  199 (672)
T ss_pred             HHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchh
Confidence            9988  999999999996 5555543322    378999999999999999999999998872      12344444 55


Q ss_pred             HHHH------HHcCcHHHHHHhhcccCCCccccccCCCCHHHH--HHHcCcHHHHHHHHH
Q 013760          141 LHIA------IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV--AEKLGNTELFSLLKE  192 (437)
Q Consensus       141 Lh~A------~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~--A~~~~~~~i~~~L~~  192 (437)
                      ||+.      ..++..|++++|++ +|+|+|.+|..|.||||.  +...++.|++++|++
T Consensus       200 l~~~il~~~~~~~n~~eiv~lLIs-~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        200 LHYYILSHRESESLSKDVIKCLID-NNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             HHHHHHhhhhhhccCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            6644      35578899999999 899999999999999995  555577999999999

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=3.1e-24  Score=185.39  Aligned_cols=182  Identities=27%  Similarity=0.277  Sum_probs=105.6

Q ss_pred             HHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCch------------------------
Q 013760            6 FMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL------------------------   61 (437)
Q Consensus         6 ~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~------------------------   61 (437)
                      .+.+.|+ .+++.....-+|+.+...|.+|++++|.|+-.|+.+.+..++.++...                        
T Consensus        68 ~~~~s~n-sd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~  146 (296)
T KOG0502|consen   68 VAVRSGN-SDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVD  146 (296)
T ss_pred             hhhhcCC-cHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHH
Confidence            3445555 555555555555544445555555555555555555555555444332                        


Q ss_pred             ------hHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCC
Q 013760           62 ------AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN  135 (437)
Q Consensus        62 ------~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~  135 (437)
                            .+.+|+.|.|||.||+..|++++|++|++.|+++... .+..+++|.+|+.+|..++|+.|+..+.++ |.-|.
T Consensus       147 ~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~l-gk~resALsLAt~ggytdiV~lLL~r~vdV-NvyDw  224 (296)
T KOG0502|consen  147 LLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDAL-GKYRESALSLATRGGYTDIVELLLTREVDV-NVYDW  224 (296)
T ss_pred             HHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhh-hhhhhhhHhHHhcCChHHHHHHHHhcCCCc-ceecc
Confidence                  2335556666666666666666666666666665533 555566666666666666666666666555 66666


Q ss_pred             CCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHH
Q 013760          136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  192 (437)
Q Consensus       136 ~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~  192 (437)
                      +|-|||-+|++-++.++++.|++ .|+|++..+..|++++++|+..|.. +++.+++
T Consensus       225 NGgTpLlyAvrgnhvkcve~Ll~-sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie  279 (296)
T KOG0502|consen  225 NGGTPLLYAVRGNHVKCVESLLN-SGADVTQEDDSGYWIMDLAVALGYR-IVQQVIE  279 (296)
T ss_pred             CCCceeeeeecCChHHHHHHHHh-cCCCcccccccCCcHHHHHHHhhhH-HHHHHHH
Confidence            66666666666666666666666 5666666666666666666666655 3444333

>PHA02792 ankyrin-like protein; Provisional

Probab=99.90  E-value=2.9e-22  Score=203.76  Aligned_cols=105  Identities=14%  Similarity=0.108  Sum_probs=84.0

Q ss_pred             HHHHHHhCCCHHHHHHhhcCCCCccccCCCCC--ChHHHHHHHcCcH---HHHHHhhcccCCCccccccCCCCHHHHHHH
Q 013760          106 ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKG--NTALHIAIKKGRT---QIVRCLLSIEGIDVNSLNKAGESPLDVAEK  180 (437)
Q Consensus       106 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G--~TpLh~A~~~g~~---~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~  180 (437)
                      +++.|+..|+.+++++|+++|+++ +.+|.+|  .||||.|+.....   +++++|++ .|+|+|.+|..|.||||.|+.
T Consensus       342 ~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs-~GADIN~kD~~G~TPLh~Aa~  419 (631)
T PHA02792        342 KYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTLSIHESDVLSILKLCKP-YIDDINKIDKHGRSILYYCIE  419 (631)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh-cCCccccccccCcchHHHHHH
Confidence            334455566677777888887776 7777765  6999988776654   46788888 899999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCcccCCCCCCChHHHHH
Q 013760          181 LGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  212 (437)
Q Consensus       181 ~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  212 (437)
                      .++.+++++|+++|++.+..+..+.++.....
T Consensus       420 ~~n~eivelLLs~GADIN~kD~~G~TpL~~A~  451 (631)
T PHA02792        420 SHSVSLVEWLIDNGADINITTKYGSTCIGICV  451 (631)
T ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            99999999999999999888888877766543

>PHA02730 ankyrin-like protein; Provisional

Probab=99.88  E-value=1.6e-21  Score=200.29  Aligned_cols=197  Identities=14%  Similarity=0.170  Sum_probs=161.3

Q ss_pred             HHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHH--HHHcCCHHHHHHHHh-----------------------------
Q 013760            8 WQQSRVILVLKELLGEFPNLVMTTDLSCSTALHT--AAAQGHIDVVNFLLE-----------------------------   56 (437)
Q Consensus         8 ~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~--Aa~~g~~~iv~~Ll~-----------------------------   56 (437)
                      ..+++ .|+++.|+.++.+ ++..|.+|.||||+  |...|+.|+|++|++                             
T Consensus       210 ~~~n~-~eiv~lLIs~Gad-IN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (672)
T PHA02730        210 SESLS-KDVIKCLIDNNVS-IHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFR  287 (672)
T ss_pred             hhccC-HHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhh
Confidence            45577 9999999999987 56899999999995  566788999999999                             


Q ss_pred             ---cCCchhHh--------------------hhcCCCc---------------------HHHHHHHcC---CHHHHHHHH
Q 013760           57 ---IDSNLAKI--------------------ARNNGKT---------------------VLHSAARMG---HLEVVKALV   89 (437)
Q Consensus        57 ---~~~~~~~~--------------------~~~~G~t---------------------pLh~Aa~~g---~~~iv~~Ll   89 (437)
                         +|.+. .+                    .+..|.+                     .||.=...|   +.+++++|+
T Consensus       288 ~~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLI  366 (672)
T PHA02730        288 VTPYNVDM-EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCML  366 (672)
T ss_pred             cccCCcch-HHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHH
Confidence               56665 33                    4555654                     566666655   689999999


Q ss_pred             hCCCCCCcccCCCCCcHHHHHHhCCC----HHHHHHhhcCCCC-ccccCCCCCChHHHH---HHHcC---------cHHH
Q 013760           90 SKDPSTGFRTDKKGQTALHMAVKGQN----EDIVLELIRPDPS-VLKLEDNKGNTALHI---AIKKG---------RTQI  152 (437)
Q Consensus        90 ~~~~~~~~~~d~~g~t~Lh~A~~~g~----~~iv~~Ll~~~~~-~~~~~d~~G~TpLh~---A~~~g---------~~~i  152 (437)
                      ++|++.+.  +..|.||||+|+..++    .++++.|+++|++ .++.+|.+|.||||.   |...+         ..++
T Consensus       367 s~GAdIN~--k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~i  444 (672)
T PHA02730        367 DNGATMDK--TTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDV  444 (672)
T ss_pred             HCCCCCCc--CCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHH
Confidence            99999985  4789999999998875    8999999999874 458899999999994   33332         2357


Q ss_pred             HHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCC-CCCChHHH
Q 013760          153 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHG-KPPSATKQ  210 (437)
Q Consensus       153 v~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~-~~~~~~~~  210 (437)
                      +++|++ .|+|+|.+|..|.||||+|+..++.+++++|+++|++.+..+. .+.++...
T Consensus       445 vk~LIs-~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~  502 (672)
T PHA02730        445 FDILSK-YMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQK  502 (672)
T ss_pred             HHHHHh-cccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHH
Confidence            999999 8999999999999999999999999999999999999987775 35555543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.88  E-value=4e-22  Score=214.87  Aligned_cols=142  Identities=26%  Similarity=0.284  Sum_probs=95.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhc--CCchhHhhhcCCCcHHH-HHHHcCCHHHHHHHHhCCCCCCcccCCC-------
Q 013760           33 LSCSTALHTAAAQGHIDVVNFLLEI--DSNLAKIARNNGKTVLH-SAARMGHLEVVKALVSKDPSTGFRTDKK-------  102 (437)
Q Consensus        33 ~~g~TpLh~Aa~~g~~~iv~~Ll~~--~~~~~~~~~~~G~tpLh-~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~-------  102 (437)
                      ..++.+|+.|++.|+.+.++.+++.  +.+. +..|..|.|||| .|+.+++.++++.|++.+.     .+..       
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~i-n~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~   88 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNI-NCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHA   88 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCC-CCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHH
Confidence            3568899999999999999999998  6665 678899999999 8899999999999998874     1333       


Q ss_pred             ---------------------------------------CCcHHHHHHhCCCHHHHHHhhcCCCCccccCC---------
Q 013760          103 ---------------------------------------GQTALHMAVKGQNEDIVLELIRPDPSVLKLED---------  134 (437)
Q Consensus       103 ---------------------------------------g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d---------  134 (437)
                                                             |.||||+|+.+|+.++++.|+++|+++ +.++         
T Consensus        89 A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv-~~~~~~~~~~~~~  167 (743)
T TIGR00870        89 ISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV-PARACGDFFVKSQ  167 (743)
T ss_pred             HHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CcCcCCchhhcCC
Confidence                                                   555555555555555555555555443 2211         


Q ss_pred             -----CCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcC
Q 013760          135 -----NKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG  182 (437)
Q Consensus       135 -----~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~  182 (437)
                           .+|.||||.|+..|+.+++++|++ .|+|+|.+|..|+||||+|+..+
T Consensus       168 ~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~-~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       168 GVDSFYHGESPLNAAACLGSPSIVALLSE-DPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             CCCcccccccHHHHHHHhCCHHHHHHHhc-CCcchhhHhhhhhHHHHHHHhhh
Confidence                 135555555555555555555555 45555555555555555555543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02741 hypothetical protein; Provisional

Probab=99.87  E-value=2.5e-21  Score=170.56  Aligned_cols=130  Identities=25%  Similarity=0.452  Sum_probs=80.0

Q ss_pred             hhcCCCcHHHHHHHcCCHHHHHHHHhC------CCCCCcccCCCCCcHHHHHHhCCC----HHHHHHhhcCCCCccccCC
Q 013760           65 ARNNGKTVLHSAARMGHLEVVKALVSK------DPSTGFRTDKKGQTALHMAVKGQN----EDIVLELIRPDPSVLKLED  134 (437)
Q Consensus        65 ~~~~G~tpLh~Aa~~g~~~iv~~Ll~~------~~~~~~~~d~~g~t~Lh~A~~~g~----~~iv~~Ll~~~~~~~~~~d  134 (437)
                      +|..|.||||+|+..|+.++++.|+..      +.+.. .+|..|+||||+|+..|+    .+++++|++.++++ +.+|
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in-~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~~   94 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALN-ATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NAQE   94 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhh-ccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCCC
Confidence            344555566666665655555555321      22222 335666666666666666    35666666666554 5555


Q ss_pred             C-CCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCC
Q 013760          135 N-KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA  196 (437)
Q Consensus       135 ~-~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~  196 (437)
                      . +|+||||+|+..++.+++++|+...|++++..|..|.||||+|...++.+++++|++.++.
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3 6777777777777777777776545667777777777777777777777777777666543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=2.5e-21  Score=169.85  Aligned_cols=138  Identities=21%  Similarity=0.250  Sum_probs=92.4

Q ss_pred             CCCCCCcHHHHHHHcCCH----HHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHH---HHHHHhCCCCCCcccC-CC
Q 013760           31 TDLSCSTALHTAAAQGHI----DVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEV---VKALVSKDPSTGFRTD-KK  102 (437)
Q Consensus        31 ~d~~g~TpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~i---v~~Ll~~~~~~~~~~d-~~  102 (437)
                      .+.++.++||.||+.|+.    +++++|++.+..+ +..|.+|+||||+|+..|+.+.   +++|++.+++++.. | ..
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~-d~~~   93 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINAR-ELGT   93 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCC-CCCC
Confidence            455666777777777776    4555566666554 4566777777777777766443   66777777766543 4 46


Q ss_pred             CCcHHHHHHhCCCHHHHHHhhc-CCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCC
Q 013760          103 GQTALHMAVKGQNEDIVLELIR-PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGE  172 (437)
Q Consensus       103 g~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~  172 (437)
                      |.||||+|+..|+.+++++|+. .+.++ +.+|.+|+||||+|+..++.+++++|++ .|++++.++..|.
T Consensus        94 g~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~  162 (166)
T PHA02743         94 GNTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMMEILRA-NGAVCDDPLSIGL  162 (166)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcccCCc
Confidence            7777777777777777777774 44443 6667777777777777777777777776 6777777666654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.87  E-value=8.6e-22  Score=170.35  Aligned_cols=202  Identities=20%  Similarity=0.176  Sum_probs=164.8

Q ss_pred             hhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHH
Q 013760            4 IHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE   83 (437)
Q Consensus         4 Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~   83 (437)
                      +..++..|- .+--+.++.....   .++..|.+-+-.+.+.|+.+++..++.-+++.+.-+|.+|+.++|.|+-.|+.+
T Consensus        35 ~~~~~~m~~-t~p~~~l~~~~s~---~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~  110 (296)
T KOG0502|consen   35 LFEQVEMGT-TEPRCALTAEISA---LRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVD  110 (296)
T ss_pred             HHHHhhccc-cchhHHHHHHHHH---HHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcc
Confidence            455666676 6666666665433   256678888888999999999998888777766666777787777777777665


Q ss_pred             HHHHHHhCCCC------------------------------CCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccC
Q 013760           84 VVKALVSKDPS------------------------------TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLE  133 (437)
Q Consensus        84 iv~~Ll~~~~~------------------------------~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~  133 (437)
                      .+..++.++..                              ..+..|+.|.|||.+|+..|+.++|++|++.|++. ...
T Consensus       111 k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~l  189 (296)
T KOG0502|consen  111 KVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DAL  189 (296)
T ss_pred             eeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhh
Confidence            55555544322                              12235899999999999999999999999999887 778


Q ss_pred             CCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHH
Q 013760          134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  211 (437)
Q Consensus       134 d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  211 (437)
                      .++..++|.+|++.|..++|++|+. ++.|+|..|-+|-|||-+|++-++.++++.|++.|++.......+..+.+..
T Consensus       190 gk~resALsLAt~ggytdiV~lLL~-r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlA  266 (296)
T KOG0502|consen  190 GKYRESALSLATRGGYTDIVELLLT-REVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLA  266 (296)
T ss_pred             hhhhhhhHhHHhcCChHHHHHHHHh-cCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHH
Confidence            8888999999999999999999999 8999999999999999999999999999999999999988887776665543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.87  E-value=1.1e-21  Score=190.10  Aligned_cols=199  Identities=25%  Similarity=0.348  Sum_probs=167.8

Q ss_pred             hhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHH
Q 013760            4 IHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE   83 (437)
Q Consensus         4 Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~   83 (437)
                      +-.|+..|+ .+-++.|+..+.+. +..+.+|.|+||-+|...+.+||++|+++|+++ +..|.+|+||||.|+..||..
T Consensus        44 ~l~A~~~~d-~~ev~~ll~~ga~~-~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   44 FLEACSRGD-LEEVRKLLNRGASP-NLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYLN  120 (527)
T ss_pred             HHhcccccc-HHHHHHHhccCCCc-cccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccHH
Confidence            567899999 99999999988654 678999999999999999999999999999998 789999999999999999999


Q ss_pred             HHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHH--------------------------HHHhhcCCCCccccCCCCC
Q 013760           84 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI--------------------------VLELIRPDPSVLKLEDNKG  137 (437)
Q Consensus        84 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~i--------------------------v~~Ll~~~~~~~~~~d~~G  137 (437)
                      ++++|+..+++.... |.+|..|+..+...-..++                          +...+..|.. .+..+..|
T Consensus       121 i~~~li~~gA~~~av-Nsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~-~d~~~~rG  198 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAV-NSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAE-LDARHARG  198 (527)
T ss_pred             HHHHHHHhhhhhhhc-cCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccc-cccccccc
Confidence            999999999988754 7777777666432211111                          1122233433 36677779


Q ss_pred             ChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChH
Q 013760          138 NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSAT  208 (437)
Q Consensus       138 ~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~  208 (437)
                      -|.||.|+.+|..++.++|++ .|.+++.+|.+|+||||.|+..|..+.+++|.++|++.+.....+..+.
T Consensus       199 ~T~lHvAaa~Gy~e~~~lLl~-ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~  268 (527)
T KOG0505|consen  199 ATALHVAAANGYTEVAALLLQ-AGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPL  268 (527)
T ss_pred             chHHHHHHhhhHHHHHHHHHH-hccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCc
Confidence            999999999999999999999 8999999999999999999999999999999999999887766655543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=3.5e-21  Score=168.91  Aligned_cols=144  Identities=18%  Similarity=0.284  Sum_probs=123.9

Q ss_pred             CCchhHhhhcCCCcHHHHHHHcCCH----HHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHH---HHHhhcCCCCcc
Q 013760           58 DSNLAKIARNNGKTVLHSAARMGHL----EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI---VLELIRPDPSVL  130 (437)
Q Consensus        58 ~~~~~~~~~~~G~tpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~i---v~~Ll~~~~~~~  130 (437)
                      +.+. ...+.++.+++|.||+.|+.    +++++|++.++... ..|.+|+||||+|+.+|+.+.   +++|++.+.++ 
T Consensus        10 ~~~~-~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~-~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-   86 (166)
T PHA02743         10 NLGA-VEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLH-RYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-   86 (166)
T ss_pred             chHH-hhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhh-ccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-
Confidence            3444 45677889999999999998    56667777777765 448899999999999988654   78999998876 


Q ss_pred             ccCC-CCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCC
Q 013760          131 KLED-NKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKP  204 (437)
Q Consensus       131 ~~~d-~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~  204 (437)
                      +.+| ..|+||||+|+..++.+++++|++..|++++.+|..|.||||+|+..++.+++++|+++|++.......+
T Consensus        87 n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  161 (166)
T PHA02743         87 NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIG  161 (166)
T ss_pred             CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCC
Confidence            8888 5899999999999999999999954799999999999999999999999999999999999987665543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.86  E-value=1.4e-20  Score=191.56  Aligned_cols=192  Identities=13%  Similarity=0.121  Sum_probs=157.6

Q ss_pred             chhhHHHHcC-------CcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCc------------
Q 013760            2 DMIHFMWQQS-------RVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQG--HIDVVNFLLEIDSN------------   60 (437)
Q Consensus         2 t~Lh~A~~~g-------~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g--~~~iv~~Ll~~~~~------------   60 (437)
                      ||||.|+.++       + .|+++.|+.++.+. +..|..|.||||+|+.+.  +.|+++.|++..-+            
T Consensus       177 t~L~~~i~~~s~~~~~~~-~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~  254 (631)
T PHA02792        177 TVLYYYIITRSQDGYATS-LDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYL  254 (631)
T ss_pred             chHHHHHhhCCcccccCC-HHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHH
Confidence            8999999999       8 99999999998774 467889999999999999  77888777653110            


Q ss_pred             ----------h------------------------------------------------------------------hHh
Q 013760           61 ----------L------------------------------------------------------------------AKI   64 (437)
Q Consensus        61 ----------~------------------------------------------------------------------~~~   64 (437)
                                +                                                                  ...
T Consensus       255 ~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~  334 (631)
T PHA02792        255 RKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATL  334 (631)
T ss_pred             HHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcc
Confidence                      0                                                                  000


Q ss_pred             hhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCC--CCcHHHHHHhCCCHH---HHHHhhcCCCCccccCCCCCCh
Q 013760           65 ARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKK--GQTALHMAVKGQNED---IVLELIRPDPSVLKLEDNKGNT  139 (437)
Q Consensus        65 ~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~--g~t~Lh~A~~~g~~~---iv~~Ll~~~~~~~~~~d~~G~T  139 (437)
                      ....+..++|.||..|+.+++++|+++|++.... |.+  +.||||+|+.+...+   +++.|++.++++ |.+|.+|+|
T Consensus       335 ~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~k-D~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADI-N~kD~~G~T  412 (631)
T PHA02792        335 YRFKHINKYFQKFDNRDPKVVEYILKNGNVVVED-DDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDI-NKIDKHGRS  412 (631)
T ss_pred             ccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhh-cCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcc-ccccccCcc
Confidence            0112456789999999999999999999998754 665  469999988776654   578889998886 999999999


Q ss_pred             HHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHH--c-C-------cHHHHHHHHHcCCCcc
Q 013760          140 ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK--L-G-------NTELFSLLKEAGAAHS  198 (437)
Q Consensus       140 pLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~--~-~-------~~~i~~~L~~~ga~~~  198 (437)
                      |||.|+..++.+++++|++ .|+++|.+|..|.|||++|..  . +       ..+++++|+++|++..
T Consensus       413 PLh~Aa~~~n~eivelLLs-~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        413 ILYYCIESHSVSLVEWLID-NGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             hHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            9999999999999999999 899999999999999999976  2 2       2467889998887653

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=7e-21  Score=167.65  Aligned_cols=127  Identities=18%  Similarity=0.304  Sum_probs=112.7

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhc------CCchhHhhhcCCCcHHHHHHHcCC----HHHHHHHHhCCCCCCcc
Q 013760           29 MTTDLSCSTALHTAAAQGHIDVVNFLLEI------DSNLAKIARNNGKTVLHSAARMGH----LEVVKALVSKDPSTGFR   98 (437)
Q Consensus        29 ~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~------~~~~~~~~~~~G~tpLh~Aa~~g~----~~iv~~Ll~~~~~~~~~   98 (437)
                      +..|..|.||||+|++.|+.++++.|+..      ++++ +.+|..|.||||+|+..|+    .+++++|++.+++++..
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence            34678999999999999999999998643      3444 6788999999999999999    58999999999998755


Q ss_pred             cC-CCCCcHHHHHHhCCCHHHHHHhhcC-CCCccccCCCCCChHHHHHHHcCcHHHHHHhhc
Q 013760           99 TD-KKGQTALHMAVKGQNEDIVLELIRP-DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  158 (437)
Q Consensus        99 ~d-~~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  158 (437)
                       | .+|+||||+|+..++.+++++|+.. +.++ +..|.+|+||||+|+..++.+++++|++
T Consensus        94 -~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~~g~tpL~~A~~~~~~~iv~~L~~  153 (169)
T PHA02741         94 -EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNADNKSPFELAIDNEDVAMMQILRE  153 (169)
T ss_pred             -CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence             5 4899999999999999999999975 5554 8899999999999999999999999998

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.85  E-value=8.2e-20  Score=185.28  Aligned_cols=189  Identities=26%  Similarity=0.311  Sum_probs=157.5

Q ss_pred             hhhHHHHcCCcHHHHHHHHhhCC--------cccccCCCCCCcHHHHHHH---cCCHHHHHHHHhcCCchhHh----hhc
Q 013760            3 MIHFMWQQSRVILVLKELLGEFP--------NLVMTTDLSCSTALHTAAA---QGHIDVVNFLLEIDSNLAKI----ARN   67 (437)
Q Consensus         3 ~Lh~A~~~g~~~~~vk~Ll~~~~--------~~~~~~d~~g~TpLh~Aa~---~g~~~iv~~Ll~~~~~~~~~----~~~   67 (437)
                      ++..|...+. ++.+..+++...        ...+.+..-|.|.||.|..   .++-++++.|++.-+.+.+-    -.-
T Consensus       104 ~~~~~~~~~~-l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  104 ALFIADSEGA-LSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhcccccc-HHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            4556666677 666666665542        2234456789999999987   46779999999987755331    123


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc--------cC--------------CCCCcHHHHHHhCCCHHHHHHhhcC
Q 013760           68 NGKTVLHSAARMGHLEVVKALVSKDPSTGFR--------TD--------------KKGQTALHMAVKGQNEDIVLELIRP  125 (437)
Q Consensus        68 ~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~--------~d--------------~~g~t~Lh~A~~~g~~~iv~~Ll~~  125 (437)
                      .|.||||+|+.+.+.++|++|++.|+|+..+        .|              ..|+.||..||.-++.|++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            6999999999999999999999999987642        12              2378999999999999999999999


Q ss_pred             CCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCC--ccccccCCCCHHHHHHHcCcHHHHHHHHHcC
Q 013760          126 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID--VNSLNKAGESPLDVAEKLGNTELFSLLKEAG  194 (437)
Q Consensus       126 ~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~--~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~g  194 (437)
                      ++++ +.+|.+|||.||..+.+-..++.+++++ .|++  ...+|++|.|||.+|++.|..++.+.+++..
T Consensus       263 gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~-~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~  331 (782)
T KOG3676|consen  263 GADP-NAQDSNGNTVLHMLVIHFVTEMYDLALE-LGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERR  331 (782)
T ss_pred             CCCC-CccccCCChHHHHHHHHHHHHHHHHHHh-cCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhh
Confidence            8887 9999999999999999999999999999 8888  8999999999999999999999999999873

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=3.7e-21  Score=166.87  Aligned_cols=96  Identities=22%  Similarity=0.368  Sum_probs=46.1

Q ss_pred             CCCCCcHHHHHHhCCCH---HHHHHhhcCCCCccccCC-CCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHH
Q 013760          100 DKKGQTALHMAVKGQNE---DIVLELIRPDPSVLKLED-NKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL  175 (437)
Q Consensus       100 d~~g~t~Lh~A~~~g~~---~iv~~Ll~~~~~~~~~~d-~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L  175 (437)
                      |.+|+||||+|+..|+.   ++++.|++.+.++ +.+| .+|+||||+|+..++.+++++|+...|++++.+|..|.|||
T Consensus        52 d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL  130 (154)
T PHA02736         52 NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPY  130 (154)
T ss_pred             cCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHH
Confidence            34444444444444443   2344444444433 3443 24555555555555555555555433455555555555555


Q ss_pred             HHHHHcCcHHHHHHHHHcCCC
Q 013760          176 DVAEKLGNTELFSLLKEAGAA  196 (437)
Q Consensus       176 ~~A~~~~~~~i~~~L~~~ga~  196 (437)
                      |+|+..++.+++++|++.|++
T Consensus       131 ~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736        131 YVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             HHHHHcCCHHHHHHHHHcCCC
Confidence            555555555555555555543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=1e-20  Score=158.01  Aligned_cols=145  Identities=26%  Similarity=0.286  Sum_probs=132.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHH
Q 013760           38 ALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED  117 (437)
Q Consensus        38 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~  117 (437)
                      -+.+|+..+....|+.||+..++..+.+|.+|.||||.|+++||.+||+.|+..+++...+ ...|+||||-||+-.+.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~-T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAK-TNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccc-cccCccchhhhhcccchh
Confidence            3678999999999999999999999999999999999999999999999999999998765 788999999999999999


Q ss_pred             HHHHhhcCCCCccccCCCCCChHHHHHHHcCcH-HHHHHhhcccCCCccccccCCCCHHHHHHHcCcH
Q 013760          118 IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT-QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT  184 (437)
Q Consensus       118 iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~-~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~  184 (437)
                      ++-.|+++|+++ |++.....||||+|+..++. ..+.+|+...+++...++..+.||+++|.+.+-.
T Consensus       145 va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  145 VAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMS  211 (228)
T ss_pred             HHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhh
Confidence            999999999987 88888889999999987654 5678888878999999999999999999877543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=8.7e-21  Score=164.50  Aligned_cols=135  Identities=19%  Similarity=0.229  Sum_probs=111.4

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHhcC------CchhHhhhcCCCcHHHHHHHcCCH---HHHHHHHhCCCCCCc
Q 013760           27 LVMTTDLSCSTALHTAAAQGHIDVVNFLLEID------SNLAKIARNNGKTVLHSAARMGHL---EVVKALVSKDPSTGF   97 (437)
Q Consensus        27 ~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~------~~~~~~~~~~G~tpLh~Aa~~g~~---~iv~~Ll~~~~~~~~   97 (437)
                      ..+.+|.+|.||||+|++.|+.  ++++...+      .......|.+|.||||+|+..|+.   +++++|++.+++.+.
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~   86 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADING   86 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccc
Confidence            3456788999999999999984  33332221      223355788999999999999987   468899999999876


Q ss_pred             ccCCCCCcHHHHHHhCCCHHHHHHhhcC-CCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCcc
Q 013760           98 RTDKKGQTALHMAVKGQNEDIVLELIRP-DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN  165 (437)
Q Consensus        98 ~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n  165 (437)
                      ..+..|.||||+|+..|+.+++++|+.. +.++ +.+|..|.||||+|+..|+.+++++|++ .|++.+
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~~g~tpL~~A~~~~~~~i~~~Ll~-~ga~~~  153 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQPGVNM-EILNYAFKTPYYVACERHDAKMMNILRA-KGAQCK  153 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-ccccCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCC
Confidence            5235899999999999999999999985 5554 8999999999999999999999999998 777754

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=2.8e-20  Score=176.09  Aligned_cols=156  Identities=12%  Similarity=0.127  Sum_probs=133.0

Q ss_pred             ccCCCCCCc-HHHHHHHcCCHHHHHHHHhcCCchhHhh----hcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCC
Q 013760           29 MTTDLSCST-ALHTAAAQGHIDVVNFLLEIDSNLAKIA----RNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKG  103 (437)
Q Consensus        29 ~~~d~~g~T-pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~----~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g  103 (437)
                      ...|..|.| |||.|+..|+.+++++|+++|+++ +.+    +..|.||||+|+..|+.+++++|+++|++++...+..|
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            456777766 556677779999999999999987 444    46899999999999999999999999999986545689


Q ss_pred             CcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCc
Q 013760          104 QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN  183 (437)
Q Consensus       104 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~  183 (437)
                      .||||.|+..|+.++++.|+..|+++ +.+|.+|.||||+|+..++.+++..+..   .   ..+..+.+|++.+   ++
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~---~n  174 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMICD---N---EISNFYKHPKKIL---IN  174 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhcC---C---cccccccChhhhh---cc
Confidence            99999999999999999999999887 8899999999999999999888766643   2   2566778888875   47


Q ss_pred             HHHHHHHHHcCC
Q 013760          184 TELFSLLKEAGA  195 (437)
Q Consensus       184 ~~i~~~L~~~ga  195 (437)
                      .+++++|+.++.
T Consensus       175 ~ei~~~Lish~v  186 (300)
T PHA02884        175 FDILKILVSHFI  186 (300)
T ss_pred             HHHHHHHHHHHH
Confidence            899999999887

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.84  E-value=1.3e-20  Score=188.63  Aligned_cols=197  Identities=24%  Similarity=0.286  Sum_probs=172.0

Q ss_pred             hhHHHHcCCcHHHHHHHHhhC------------CcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCc
Q 013760            4 IHFMWQQSRVILVLKELLGEF------------PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKT   71 (437)
Q Consensus         4 Lh~A~~~g~~~~~vk~Ll~~~------------~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~t   71 (437)
                      |-.|++.|+ ++.+..+|+..            ++-.+..|.+|.|.||.|+.+|+.+++++|++..+-+ ++.|..|.+
T Consensus         7 l~~a~ka~d-~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~kg~~   84 (854)
T KOG0507|consen    7 LIDACKAGD-YDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTKGIL   84 (854)
T ss_pred             HHHhhhccc-HHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhccCcc
Confidence            567999999 99999999852            2335567889999999999999999999999988766 788899999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHH
Q 013760           72 VLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ  151 (437)
Q Consensus        72 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~  151 (437)
                      |||+|++.|+.++++.|+..+...+ ..+-.|.||||.|++.|+.+++.+|++++.+. -.+|+.+.|+|.+|++.|..+
T Consensus        85 plhlaaw~g~~e~vkmll~q~d~~n-a~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfgr~~  162 (854)
T KOG0507|consen   85 PLHLAAWNGNLEIVKMLLLQTDILN-AVNIENETPLHLAAQHGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFGRAE  162 (854)
T ss_pred             eEEehhhcCcchHHHHHHhcccCCC-cccccCcCccchhhhhcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhhhhH
Confidence            9999999999999999999985555 44788999999999999999999999999887 568999999999999999999


Q ss_pred             HHHHhhcccCCC--------ccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCC
Q 013760          152 IVRCLLSIEGID--------VNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPP  205 (437)
Q Consensus       152 iv~~Ll~~~g~~--------~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~  205 (437)
                      +++.|++. ..+        -..++-.+.+|||+|+++|+.++++.|+++|.+.+...+.+.
T Consensus       163 Vvq~ll~~-~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~gt  223 (854)
T KOG0507|consen  163 VVQMLLQK-KFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDGT  223 (854)
T ss_pred             HHHHHhhh-ccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccch
Confidence            99999974 222        234566788999999999999999999999999887666553

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=2.3e-20  Score=181.10  Aligned_cols=175  Identities=27%  Similarity=0.394  Sum_probs=148.0

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +|+||.||.-.+ .+||++|++.+.+ ++..|..|+||||.|+..||.+++++|+..|++. ...|.+|..|+..+...-
T Consensus        74 lTalhq~~id~~-~e~v~~l~e~ga~-Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea  150 (527)
T KOG0505|consen   74 LTALHQACIDDN-LEMVKFLVENGAN-VNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANL-LAVNSDGNMPYDLAEDEA  150 (527)
T ss_pred             chhHHHHHhccc-HHHHHHHHHhcCC-ccccccccCCcchhhcccccHHHHHHHHHhhhhh-hhccCCCCCccccccCcc
Confidence            589999999999 9999999999887 5689999999999999999999999999999987 446777777755543211


Q ss_pred             CH--------------------------HHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCC
Q 013760           81 HL--------------------------EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLED  134 (437)
Q Consensus        81 ~~--------------------------~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d  134 (437)
                      ..                          +=++..+..|.+.... +..|.|.||+|+.+|..++.+.|++.+.++ +.+|
T Consensus       151 ~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~-~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~-~~~D  228 (527)
T KOG0505|consen  151 TLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDAR-HARGATALHVAAANGYTEVAALLLQAGYSV-NIKD  228 (527)
T ss_pred             hhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccc-ccccchHHHHHHhhhHHHHHHHHHHhccCc-cccc
Confidence            11                          1122334456666554 445999999999999999999999999887 8999


Q ss_pred             CCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHc
Q 013760          135 NKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL  181 (437)
Q Consensus       135 ~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~  181 (437)
                      .+|+||||.|+..|+.+++++|++ +|++++..+..|.||+++|..-
T Consensus       229 ~dgWtPlHAAA~Wg~~~~~elL~~-~ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  229 YDGWTPLHAAAHWGQEDACELLVE-HGADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             ccCCCcccHHHHhhhHhHHHHHHH-hhcccchhhhcCCCCccchhhh
Confidence            999999999999999999999998 8999999999999999999763

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=7.3e-20  Score=169.31  Aligned_cols=155  Identities=26%  Similarity=0.323  Sum_probs=141.3

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHc-----CCHHHHHHHHhcCCchhHhhhcCCCcHHHHH
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQ-----GHIDVVNFLLEIDSNLAKIARNNGKTVLHSA   76 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~-----g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~A   76 (437)
                      |+||+|+.++| .++|+.||+.+--.++..|..|+||.++|+..     .+.++|..|.+.| +++......|.|+|++|
T Consensus       270 TALHYsVSHaN-F~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLA  347 (452)
T KOG0514|consen  270 TALHYAVSHAN-FDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLA  347 (452)
T ss_pred             eeeeeeecccc-hHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcchhhhhh
Confidence            89999999999 99999999998877888999999999999864     5789999999875 44445667899999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHh
Q 013760           77 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL  156 (437)
Q Consensus        77 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L  156 (437)
                      +.+|+.++|+.||..++|++.. |.+|.|+|++|+++||.|+++.||......+...|.+|-|+|.+|-..|+.+|.-+|
T Consensus       348 VSHGr~d~vk~LLacgAdVNiQ-DdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~ml  426 (452)
T KOG0514|consen  348 VSHGRVDMVKALLACGADVNIQ-DDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVML  426 (452)
T ss_pred             hhcCcHHHHHHHHHccCCCccc-cCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHH
Confidence            9999999999999999999865 999999999999999999999999988777788999999999999999999999988


Q ss_pred             hcc
Q 013760          157 LSI  159 (437)
Q Consensus       157 l~~  159 (437)
                      ..+
T Consensus       427 Ya~  429 (452)
T KOG0514|consen  427 YAH  429 (452)
T ss_pred             HHH
Confidence            863

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.81  E-value=3.1e-19  Score=168.96  Aligned_cols=145  Identities=14%  Similarity=0.103  Sum_probs=125.3

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccC----CCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHH
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTT----DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAA   77 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~----d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa   77 (437)
                      ++||.|+..|+ .++++.|++.+.+.. .+    |..|.||||+|+..|+.+++++|+++|+++....+..|.||||.|+
T Consensus        35 ~lL~~A~~~~~-~eivk~LL~~GAdiN-~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa  112 (300)
T PHA02884         35 NILYSSIKFHY-TDIIDAILKLGADPE-APFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISV  112 (300)
T ss_pred             HHHHHHHHcCC-HHHHHHHHHCCCCcc-ccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHH
Confidence            58899999999 999999999998753 33    4689999999999999999999999999984334567999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhh
Q 013760           78 RMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL  157 (437)
Q Consensus        78 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll  157 (437)
                      ..|+.+++++|++.|+++... |..|.||||+|+..++.+++..+..      +..+..+.+|++.+   ++.+++++|+
T Consensus       113 ~~~~~eivklLL~~GAdin~k-d~~G~TpL~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~n~ei~~~Li  182 (300)
T PHA02884        113 LHGCLKCLEILLSYGADINIQ-TNDMVTPIELALMICNNFLAFMICD------NEISNFYKHPKKIL---INFDILKILV  182 (300)
T ss_pred             HcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHhCChhHHHHhcC------CcccccccChhhhh---ccHHHHHHHH
Confidence            999999999999999998864 8999999999999998888765542      23577788999975   4789999999


Q ss_pred             c
Q 013760          158 S  158 (437)
Q Consensus       158 ~  158 (437)
                      +
T Consensus       183 s  183 (300)
T PHA02884        183 S  183 (300)
T ss_pred             H
Confidence            8

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=2.7e-19  Score=149.52  Aligned_cols=142  Identities=30%  Similarity=0.343  Sum_probs=122.7

Q ss_pred             hhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHH
Q 013760            4 IHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE   83 (437)
Q Consensus         4 Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~   83 (437)
                      +-.|+..+. +..|+.||+..++.++.+|.+|+||||.|+.+||.+||+.|+..|++. +.+...|+||||-||.-.+.+
T Consensus        67 ~lwaae~nr-l~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   67 LLWAAEKNR-LTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHhhcc-HHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchh
Confidence            456788888 999999999999999999999999999999999999999999999998 567788999999999999999


Q ss_pred             HHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHH-HHHHhhcCCCCccccCCCCCChHHHHHHHcC
Q 013760           84 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED-IVLELIRPDPSVLKLEDNKGNTALHIAIKKG  148 (437)
Q Consensus        84 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~-iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g  148 (437)
                      ++-.|+++|++++.. .+...||||+||.+.+.. .+.+|+....--....+..+.||+.+|-+.+
T Consensus       145 va~~LLqhgaDVnA~-t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQ-TKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHHHhccCccccc-ccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            999999999999865 666799999999887765 4566665443333556778899999997765

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.79  E-value=5.9e-20  Score=165.01  Aligned_cols=152  Identities=30%  Similarity=0.411  Sum_probs=124.8

Q ss_pred             HHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHh
Q 013760           43 AAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL  122 (437)
Q Consensus        43 a~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~L  122 (437)
                      |+.|+.--|++.|+......++-|..|.+||||||+.||..+++.|+..|+..+.. +....||||+|+.+|+-++|+.|
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~t-nmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNST-NMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccc-cCCCCcchhhhhhcccHHHHHHH
Confidence            45555555566666555555778888999999999999999999999999888743 77778999999999999999999


Q ss_pred             hcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCc
Q 013760          123 IRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  197 (437)
Q Consensus       123 l~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~  197 (437)
                      ++..+++ |..+..|+||||+||..|..++.+-|+. .|+.++..|++|.|||+.|...-...+.++--++|-..
T Consensus        87 l~~kadv-navnehgntplhyacfwgydqiaedli~-~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~  159 (448)
T KOG0195|consen   87 LSRKADV-NAVNEHGNTPLHYACFWGYDQIAEDLIS-CGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSP  159 (448)
T ss_pred             HHHhccc-chhhccCCCchhhhhhhcHHHHHHHHHh-ccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCC
Confidence            9988776 9999999999999999999999999999 89999999999999999885443334444445556544

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.72  E-value=6.6e-18  Score=174.08  Aligned_cols=202  Identities=22%  Similarity=0.228  Sum_probs=166.6

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      |+|-.||+.|| .|.+++|+.++.+ +..+|..|.+||.+|+-.||..+|+.|+++.+++..+.|..+.|+|-+||..|+
T Consensus       759 t~LT~acaggh-~e~vellv~rgan-iehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr  836 (2131)
T KOG4369|consen  759 TNLTSACAGGH-REEVELLVVRGAN-IEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGR  836 (2131)
T ss_pred             ccccccccCcc-HHHHHHHHHhccc-ccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCc
Confidence            68999999999 9999999999877 457899999999999999999999999999999988899999999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccC--CCCCChHHHHHHHcCcHHHHHHhhcc
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLE--DNKGNTALHIAIKKGRTQIVRCLLSI  159 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~--d~~G~TpLh~A~~~g~~~iv~~Ll~~  159 (437)
                      .++|++||..+.+...+ +-...|||.+|...|..+++..|+.+|..+ |.+  .+.|-.||.+|+.+|+.+.++.|++ 
T Consensus       837 ~~vvelLl~~gankehr-nvsDytPlsla~Sggy~~iI~~llS~GseI-nSrtgSklgisPLmlatmngh~~at~~ll~-  913 (2131)
T KOG4369|consen  837 TRVVELLLNAGANKEHR-NVSDYTPLSLARSGGYTKIIHALLSSGSEI-NSRTGSKLGISPLMLATMNGHQAATLSLLQ-  913 (2131)
T ss_pred             chHHHHHHHhhcccccc-chhhcCchhhhcCcchHHHHHHHhhccccc-ccccccccCcchhhhhhhccccHHHHHHhc-
Confidence            99999999998887654 777889999999999999999998888766 333  3467788888888888888888887 


Q ss_pred             cCCCccccc-cCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChH
Q 013760          160 EGIDVNSLN-KAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSAT  208 (437)
Q Consensus       160 ~g~~~n~~n-~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~  208 (437)
                      .|.|+|+.- .+.+|+|.+|+-.|..+++.+|+.+.+......+.+.++.
T Consensus       914 ~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltpl  963 (2131)
T KOG4369|consen  914 PGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPL  963 (2131)
T ss_pred             ccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCccc
Confidence            777777543 3556777777777777777777777666555444444443

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.72  E-value=5e-18  Score=152.63  Aligned_cols=154  Identities=24%  Similarity=0.291  Sum_probs=124.1

Q ss_pred             HHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHH
Q 013760            8 WQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA   87 (437)
Q Consensus         8 ~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~   87 (437)
                      |+.|+ .=-|+..|+......+.-|..|.+|||+||+.||..+|+.|+.+|+.+ +..+....||||+||..||.++|+.
T Consensus         8 cregn-a~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqk   85 (448)
T KOG0195|consen    8 CREGN-AFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQK   85 (448)
T ss_pred             hhcCC-eEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHH
Confidence            44555 334555566555556778999999999999999999999999999987 6677777899999999999999999


Q ss_pred             HHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccc
Q 013760           88 LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNS  166 (437)
Q Consensus        88 Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~  166 (437)
                      |++..+|.+.. +..|.||||+||.-|...+.+-|+..|+.+ +..+++|.|||..|--.- .+.+.-+.+..|.++|.
T Consensus        86 ll~~kadvnav-nehgntplhyacfwgydqiaedli~~ga~v-~icnk~g~tpldkakp~l-~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen   86 LLSRKADVNAV-NEHGNTPLHYACFWGYDQIAEDLISCGAAV-NICNKKGMTPLDKAKPML-KNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             HHHHhcccchh-hccCCCchhhhhhhcHHHHHHHHHhcccee-eecccCCCCchhhhchHH-HHHHHHHHHHhCCCCCc
Confidence            99999998854 999999999999999999999999998776 889999999998773221 12223333445666553

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.71  E-value=1.9e-16  Score=130.84  Aligned_cols=123  Identities=41%  Similarity=0.635  Sum_probs=77.5

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHH
Q 013760           31 TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA  110 (437)
Q Consensus        31 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  110 (437)
                      .|.+|.||||+|+..|+.+++++|++.+.+. ...+..|.||||.|+..++.++++.|++.++.... .+..|.||+|.|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~-~~~~~~~~l~~a   80 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA-RDKDGNTPLHLA   80 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHH
Confidence            3456667777777777777777776666654 44556666666666666666666666666654433 255666666666


Q ss_pred             HhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHh
Q 013760          111 VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL  156 (437)
Q Consensus       111 ~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L  156 (437)
                      +..++.+++++|++.+... +..|..|.||+|.|...++.+++++|
T Consensus        81 ~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          81 ARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            6666666666666655333 45556666666666666666666655

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.70  E-value=9.5e-17  Score=125.55  Aligned_cols=89  Identities=43%  Similarity=0.614  Sum_probs=58.3

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHH
Q 013760           73 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI  152 (437)
Q Consensus        73 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~i  152 (437)
                      ||+|+..|+.+++++|++.+++...     |.||||+|+.+|+.+++++|++.+.++ +.+|.+|+||||+|+.+|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHHH
Confidence            5667777777777777766655432     666777777777777777777766655 6666777777777777777777


Q ss_pred             HHHhhcccCCCccccc
Q 013760          153 VRCLLSIEGIDVNSLN  168 (437)
Q Consensus       153 v~~Ll~~~g~~~n~~n  168 (437)
                      +++|++ .|++++.+|
T Consensus        75 ~~~Ll~-~g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLE-HGADVNIRN   89 (89)
T ss_dssp             HHHHHH-TTT-TTSS-
T ss_pred             HHHHHH-cCCCCCCcC
Confidence            777776 566666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.70  E-value=3.4e-16  Score=129.29  Aligned_cols=124  Identities=40%  Similarity=0.626  Sum_probs=114.0

Q ss_pred             hhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHH
Q 013760           65 ARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA  144 (437)
Q Consensus        65 ~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A  144 (437)
                      .|.+|.||||+|+..|+.+++++|++.+++.. ..+..|.||||.|+..++.++++.|++.+... +..+..|.||+|.|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~-~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a   80 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLA   80 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHH
Confidence            46789999999999999999999999998864 44889999999999999999999999998754 77889999999999


Q ss_pred             HHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHH
Q 013760          145 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK  191 (437)
Q Consensus       145 ~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~  191 (437)
                      +..++.+++++|++ .+.+++..|..|.||++.|...++.+++++|+
T Consensus        81 ~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          81 ARNGNLDVVKLLLK-HGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHcCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999 78899999999999999999999999988763

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.68  E-value=1.8e-16  Score=123.92  Aligned_cols=86  Identities=36%  Similarity=0.533  Sum_probs=64.0

Q ss_pred             hhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHH
Q 013760            4 IHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE   83 (437)
Q Consensus         4 Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~   83 (437)
                      ||.|++.|+ +++++.|++.+++..    . |+||||+|+..|+.+++++|++.|+++ +.+|.+|+||||+|+..|+.+
T Consensus         1 L~~A~~~~~-~~~~~~ll~~~~~~~----~-~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGN-LEILKFLLEKGADIN----L-GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTT-HHHHHHHHHTTSTTT----S-SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCC-HHHHHHHHHCcCCCC----C-CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHH
Confidence            677888888 888888888665532    1 777888888888888888888877776 566777888888888888888


Q ss_pred             HHHHHHhCCCCCC
Q 013760           84 VVKALVSKDPSTG   96 (437)
Q Consensus        84 iv~~Ll~~~~~~~   96 (437)
                      ++++|++++++++
T Consensus        74 ~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   74 IVKLLLEHGADVN   86 (89)
T ss_dssp             HHHHHHHTTT-TT
T ss_pred             HHHHHHHcCCCCC
Confidence            8888888777765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.68  E-value=2.4e-17  Score=170.07  Aligned_cols=196  Identities=26%  Similarity=0.322  Sum_probs=181.2

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      ++||.+|+..|| ..+|+.|++...++-...|..+.|+|-+||..|+.++|++||..|++. .-++-...|||-+|...|
T Consensus       791 f~plImaatagh-~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gank-ehrnvsDytPlsla~Sgg  868 (2131)
T KOG4369|consen  791 FVPLIMAATAGH-ITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANK-EHRNVSDYTPLSLARSGG  868 (2131)
T ss_pred             chhhhhhcccCc-hHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccc-cccchhhcCchhhhcCcc
Confidence            579999999999 999999999999988888999999999999999999999999999987 456777899999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccC-CCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcc
Q 013760           81 HLEVVKALVSKDPSTGFRTD-KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI  159 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  159 (437)
                      ..++++.|+..|.+++.+.. +.|-+||.+|..+|+.+.++.|++.+.++......+.||+|-+|+..|+.+++.+||. 
T Consensus       869 y~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa-  947 (2131)
T KOG4369|consen  869 YTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLA-  947 (2131)
T ss_pred             hHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHH-
Confidence            99999999999998876543 5799999999999999999999999988855567788999999999999999999999 


Q ss_pred             cCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCccc
Q 013760          160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK  199 (437)
Q Consensus       160 ~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~  199 (437)
                      ..+++..+-+.|.|||+-++..|..++-++|+.+|+|.+.
T Consensus       948 ~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~na  987 (2131)
T KOG4369|consen  948 AQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNA  987 (2131)
T ss_pred             HhhhhhhhcccCCcccchhhcCCccccchhhhhccccccc
Confidence            8899999999999999999999999999999999998754

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.65  E-value=1.6e-15  Score=154.37  Aligned_cols=156  Identities=22%  Similarity=0.319  Sum_probs=136.5

Q ss_pred             chhhHHHHc---CCcHHHHHHHHhhCCcccccC----CCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHh-------hh-
Q 013760            2 DMIHFMWQQ---SRVILVLKELLGEFPNLVMTT----DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKI-------AR-   66 (437)
Q Consensus         2 t~Lh~A~~~---g~~~~~vk~Ll~~~~~~~~~~----d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-------~~-   66 (437)
                      |.||.|..+   ++ -++++.|++..|++++..    ...|.||||+|+.+.+.++|++|++.|+|+...       ++ 
T Consensus       145 T~Lh~~lL~~~~~~-n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~d  223 (782)
T KOG3676|consen  145 TLLHKALLNLSDGH-NELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDD  223 (782)
T ss_pred             hHHHHHHhcCchhH-HHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCccc
Confidence            689999883   34 589999999999876543    457999999999999999999999999997332       11 


Q ss_pred             ---c-----------CCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCC-ccc
Q 013760           67 ---N-----------NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS-VLK  131 (437)
Q Consensus        67 ---~-----------~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~-~~~  131 (437)
                         .           .|..||-.||--++.|++++|+++++|++.. |.+|+|.||+.+..-..++...+++.++. ...
T Consensus       224 qk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aq-DS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~  302 (782)
T KOG3676|consen  224 QKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQ-DSNGNTVLHMLVIHFVTEMYDLALELGANALEH  302 (782)
T ss_pred             ccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCcc-ccCCChHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence               1           3789999999999999999999999999865 99999999999999999999999999877 236


Q ss_pred             cCCCCCChHHHHHHHcCcHHHHHHhhcc
Q 013760          132 LEDNKGNTALHIAIKKGRTQIVRCLLSI  159 (437)
Q Consensus       132 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  159 (437)
                      .++.+|-|||-+|+..|+.++++.+++.
T Consensus       303 v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  303 VRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             ccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            7899999999999999999999999985

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.61  E-value=2.1e-14  Score=131.30  Aligned_cols=130  Identities=37%  Similarity=0.485  Sum_probs=121.2

Q ss_pred             HhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCC-----HHHHHHhhcCCC--CccccCCC
Q 013760           63 KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN-----EDIVLELIRPDP--SVLKLEDN  135 (437)
Q Consensus        63 ~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-----~~iv~~Ll~~~~--~~~~~~d~  135 (437)
                      ...+..+.+++|.++..+..+++++++..+.+. ...|..|.||||+|+.+++     .++++.|++.+.  +..+.+|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            445667899999999999999999999999999 4569999999999999999     999999999999  67788899


Q ss_pred             CCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcC
Q 013760          136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG  194 (437)
Q Consensus       136 ~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~g  194 (437)
                      +|+||||+|+..|+.+++++|++ .|++++..|..|.|+++.|+..++.++++.+.+.+
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLE-AGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHh-cCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999 89999999999999999999999999999999877

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.59  E-value=2e-14  Score=131.44  Aligned_cols=129  Identities=33%  Similarity=0.443  Sum_probs=120.4

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC-----HHHHHHHHhCCC--CCCcccCC
Q 013760           29 MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH-----LEVVKALVSKDP--STGFRTDK  101 (437)
Q Consensus        29 ~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~-----~~iv~~Ll~~~~--~~~~~~d~  101 (437)
                      ...+..+.+++|.++..+..++++++++.+.+. +.+|.+|.||||+|+..|+     .++++.|++.++  +.....|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            346677999999999999999999999999998 8899999999999999999     999999999999  66667799


Q ss_pred             CCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcc
Q 013760          102 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI  159 (437)
Q Consensus       102 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  159 (437)
                      +|.||||+|+..|+.++++.|++.++++ +..+..|.|++|.|+..++.++++.++..
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCCC-cccccCCCcchhhhcccchHHHHHHHHhc
Confidence            9999999999999999999999998887 77899999999999999999999999983

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.46  E-value=1.6e-13  Score=103.04  Aligned_cols=103  Identities=23%  Similarity=0.264  Sum_probs=74.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHH
Q 013760           72 VLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ  151 (437)
Q Consensus        72 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~  151 (437)
                      -..|+.++|..+-|+..+..+.+.+..  ..|++|||+|+.+|+.+++++|+..|+++ +.+|++|-|||--|+..|+.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhhHH
Confidence            356777777777777777777555432  36777777777777777777777777776 777777777777777777777


Q ss_pred             HHHHhhcccCCCccccccCCCCHHHHH
Q 013760          152 IVRCLLSIEGIDVNSLNKAGESPLDVA  178 (437)
Q Consensus       152 iv~~Ll~~~g~~~n~~n~~G~T~L~~A  178 (437)
                      +|++|++ .|+|-....-+|.+.+..+
T Consensus        82 cVklLL~-~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   82 CVKLLLQ-NGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHH-cCcccceeCCCchhHHhhc
Confidence            7777777 6777777777776665544

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.40  E-value=1.6e-12  Score=97.79  Aligned_cols=96  Identities=26%  Similarity=0.321  Sum_probs=52.9

Q ss_pred             HHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHH
Q 013760            6 FMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV   85 (437)
Q Consensus         6 ~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv   85 (437)
                      .++++|. +|-||..+.++-+...  -..|++|||+|+-.|.++++++|+..|+++ +.+|+.|.|||--|+..||.++|
T Consensus         8 W~vkNG~-~DeVk~~v~~g~nVn~--~~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    8 WNVKNGE-IDEVKQSVNEGLNVNE--IYGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hhhccCc-HHHHHHHHHccccHHH--HhCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhhHHHH
Confidence            4555666 6666665555533221  125566666666666666666666666655 44555666666666666666666


Q ss_pred             HHHHhCCCCCCcccCCCCCcH
Q 013760           86 KALVSKDPSTGFRTDKKGQTA  106 (437)
Q Consensus        86 ~~Ll~~~~~~~~~~d~~g~t~  106 (437)
                      ++|+++|++-... ..+|.+.
T Consensus        84 klLL~~GAdrt~~-~PdG~~~  103 (117)
T KOG4214|consen   84 KLLLQNGADRTIH-APDGTAL  103 (117)
T ss_pred             HHHHHcCccccee-CCCchhH
Confidence            6666666554332 4445443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=7.4e-13  Score=128.22  Aligned_cols=117  Identities=26%  Similarity=0.315  Sum_probs=90.9

Q ss_pred             HHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHH
Q 013760           40 HTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV  119 (437)
Q Consensus        40 h~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv  119 (437)
                      .-|+..|-+|+|+..+..-.|. .+.|..|.|+||-|+..||.+||++|++.|.+++.. |.+|+||||+|+..++..++
T Consensus       555 LDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~-DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAA-DSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCc-cCCCCchhhhhhhcCchHHH
Confidence            4477788888888888765554 567788888888888888888888888888888765 88888888888888888888


Q ss_pred             HHhhcCCCCccccCCCCCChHHHHHH--HcCcHHHHHHhhc
Q 013760          120 LELIRPDPSVLKLEDNKGNTALHIAI--KKGRTQIVRCLLS  158 (437)
Q Consensus       120 ~~Ll~~~~~~~~~~d~~G~TpLh~A~--~~g~~~iv~~Ll~  158 (437)
                      +.|++.|+.+.-..-.++.|+..-+-  +.|..++.++|..
T Consensus       633 kqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  633 KQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            88888888776666667777766553  3467788888764

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.39  E-value=7.2e-13  Score=93.07  Aligned_cols=54  Identities=37%  Similarity=0.631  Sum_probs=31.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHH
Q 013760           35 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV   89 (437)
Q Consensus        35 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll   89 (437)
                      |.||||+|++.|+.+++++|++++.++ +.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            556666666666666666666666665 444666666666666666666666664

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.38  E-value=3.6e-13  Score=95.28  Aligned_cols=56  Identities=39%  Similarity=0.661  Sum_probs=32.1

Q ss_pred             hhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHH
Q 013760          122 LIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA  178 (437)
Q Consensus       122 Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A  178 (437)
                      |++.++..++.+|.+|+||||+|+.+|+.+++++|++ .|+|++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~-~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ-NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHH-CT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence            4566655568999999999999999999999999996 8999999999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.35  E-value=3.7e-12  Score=135.00  Aligned_cols=106  Identities=24%  Similarity=0.294  Sum_probs=78.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHH
Q 013760           72 VLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ  151 (437)
Q Consensus        72 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~  151 (437)
                      +|+.|+..|+.+.++.|++.+++++.. |.+|.||||+|+.+|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~-d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCR-DYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHH
Confidence            477777788888888888777776644 777888888888888888888888777665 777778888888888888888


Q ss_pred             HHHHhhcc------cCCCccccccCCCCHHHHHH
Q 013760          152 IVRCLLSI------EGIDVNSLNKAGESPLDVAE  179 (437)
Q Consensus       152 iv~~Ll~~------~g~~~n~~n~~G~T~L~~A~  179 (437)
                      ++++|+++      .|++.+..+..|.+|+..+.
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            88888762      26677777777776665443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.35  E-value=4.5e-12  Score=114.55  Aligned_cols=117  Identities=22%  Similarity=0.212  Sum_probs=61.0

Q ss_pred             hhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCH
Q 013760            3 MIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL   82 (437)
Q Consensus         3 ~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~   82 (437)
                      ||-.++..|+ .+-...||..-. ..+.+|.+|.|||..|+..|+.++|+.|++.|+|++.-++..+.||||.||..|+.
T Consensus        15 ~Lle~i~Knd-t~~a~~LLs~vr-~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   15 PLLEAIDKND-TEAALALLSTVR-QVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             HHHHHHccCc-HHHHHHHHHHhh-hhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            4445555555 555555554421 23345555555555555555555555555555555444444555555555555555


Q ss_pred             HHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHh
Q 013760           83 EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL  122 (437)
Q Consensus        83 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~L  122 (437)
                      ++.+.|++.|+.... .|.-|+|+-.+|+.-|+-++|..+
T Consensus        93 dvcrllldaGa~~~~-vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   93 DVCRLLLDAGARMYL-VNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             hHHHHHHhccCcccc-ccchhhhHHHHHHHhcchHHHHHH
Confidence            555555555555442 255555555555555555554433

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.35  E-value=7.7e-13  Score=93.54  Aligned_cols=56  Identities=38%  Similarity=0.424  Sum_probs=24.3

Q ss_pred             HHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHH
Q 013760           20 LLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA   76 (437)
Q Consensus        20 Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~A   76 (437)
                      ||+.++...+..|..|.||||+||..|+.+++++|++.+.++ +.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHhC
Confidence            345554555666777777777777777777777777666665 56677777777765

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.33  E-value=4.3e-12  Score=134.48  Aligned_cols=106  Identities=25%  Similarity=0.304  Sum_probs=92.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCH
Q 013760           37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE  116 (437)
Q Consensus        37 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~  116 (437)
                      ++|+.|+..|+.++++.|++.|+++ +.+|.+|.||||+|+..|+.+++++|++.+++.+. .|.+|.||||+|+.+|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~-~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTL-LDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCCcH
Confidence            3588999999999999999999987 67899999999999999999999999999999875 499999999999999999


Q ss_pred             HHHHHhhcC-------CCCccccCCCCCChHHHHHH
Q 013760          117 DIVLELIRP-------DPSVLKLEDNKGNTALHIAI  145 (437)
Q Consensus       117 ~iv~~Ll~~-------~~~~~~~~d~~G~TpLh~A~  145 (437)
                      ++++.|+++       +++. +..+.+|++|+..+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~-~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANA-KPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCCC-CccccCCCCccchhh
Confidence            999999987       4443 566777777766554

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.32  E-value=1.1e-11  Score=112.06  Aligned_cols=123  Identities=21%  Similarity=0.223  Sum_probs=109.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhC
Q 013760           34 SCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG  113 (437)
Q Consensus        34 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  113 (437)
                      .-..||.-+...|+.+....||+.-.+. +..|.+|++||..|+..|+.++++.|++.++|++...+..+.||||.|+..
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            3467999999999999999999875444 789999999999999999999999999999999988888899999999999


Q ss_pred             CCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhc
Q 013760          114 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  158 (437)
Q Consensus       114 g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  158 (437)
                      |+.++.+.|++.|... ...+.-|+|+-.+|+..|+.++|..+-+
T Consensus        90 Gn~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             CCchHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            9999999999999776 6678889999999999999998886654

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=4.2e-12  Score=123.09  Aligned_cols=118  Identities=26%  Similarity=0.304  Sum_probs=100.3

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHH
Q 013760           73 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI  152 (437)
Q Consensus        73 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~i  152 (437)
                      |.-|+..|.+|+|+..+..-.|.... |..|-|+||-|+..||.+||++|++.|.++ |..|.+||||||.|+..++..+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqp-NdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQP-NDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCC-CccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCchHH
Confidence            55688999999999999887776654 888999999999999999999999999887 9999999999999999999999


Q ss_pred             HHHhhcccCCCc-cccccCCCCHHHHHHHc--CcHHHHHHHHHc
Q 013760          153 VRCLLSIEGIDV-NSLNKAGESPLDVAEKL--GNTELFSLLKEA  193 (437)
Q Consensus       153 v~~Ll~~~g~~~-n~~n~~G~T~L~~A~~~--~~~~i~~~L~~~  193 (437)
                      ++.|++ .|+.+ -..-.++.||.+-+...  |..++.++|-..
T Consensus       632 ckqLVe-~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  632 CKQLVE-SGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHHHh-ccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            999999 55554 44456888998877654  667888888653

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.32  E-value=3.9e-12  Score=89.33  Aligned_cols=52  Identities=46%  Similarity=0.590  Sum_probs=19.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHh
Q 013760           70 KTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL  122 (437)
Q Consensus        70 ~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~L  122 (437)
                      +||||+|+..|+.+++++|++.+.+++.. |.+|+||||+|+.+|+.+++++|
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~din~~-d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADINAQ-DEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGTT-B--TTS--HHHHHHHTT-HHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHccCHHHHHHH
Confidence            34444444444444444444444443322 44444444444444444444433

...

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.80  E-value=2.5e-08  Score=97.90  Aligned_cols=118  Identities=26%  Similarity=0.296  Sum_probs=89.7

Q ss_pred             hHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCc-hhHhhhcCCCcHHHHHHHcCCHH
Q 013760            5 HFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN-LAKIARNNGKTVLHSAARMGHLE   83 (437)
Q Consensus         5 h~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~G~tpLh~Aa~~g~~~   83 (437)
                      -.|+..++ +-.+++.-..+.++. .++.+.+|.||+|+..|+-|+|+++|++++. +.+..|.+|.|+||-|+..++..
T Consensus       871 l~av~~~D-~~klqE~h~~gg~ll-~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  871 LRAVLSSD-LMKLQETHLNGGSLL-IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHhcc-HHHHHHHHhcCCceE-eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            44666666 555555555666644 5677888888888888888888888888764 44667788888888888888888


Q ss_pred             HHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcC
Q 013760           84 VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP  125 (437)
Q Consensus        84 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~  125 (437)
                      +.++|++.|+... .+|.+|.||-..|-+.|+.+...+|-..
T Consensus       949 vc~~lvdagasl~-ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  949 VCQLLVDAGASLR-KTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHhcchhhe-ecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            8888888888775 4588888888888888888888777543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.76  E-value=2.5e-08  Score=97.90  Aligned_cols=118  Identities=23%  Similarity=0.341  Sum_probs=101.7

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCC-CccccCCCCCChHHHHHHHcCcHH
Q 013760           73 LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP-SVLKLEDNKGNTALHIAIKKGRTQ  151 (437)
Q Consensus        73 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~-~~~~~~d~~G~TpLh~A~~~g~~~  151 (437)
                      +..|+..++.--++.....|.+.... +.+..+.||+|++.|+-|+|++++++++ .+++..|..|.|+||.|+..++-.
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~-~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQ-GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEee-CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            45566666665566666677776644 8889999999999999999999999986 466888999999999999999999


Q ss_pred             HHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHH
Q 013760          152 IVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  192 (437)
Q Consensus       152 iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~  192 (437)
                      +..+|++ .|+.+...|.+|.||-.-|.+.+..++..+|-.
T Consensus       949 vc~~lvd-agasl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  949 VCQLLVD-AGASLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHHh-cchhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            9999999 899999999999999999999999998887754

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.70  E-value=1.3e-08  Score=98.05  Aligned_cols=95  Identities=24%  Similarity=0.368  Sum_probs=88.1

Q ss_pred             CCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHH
Q 013760          100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE  179 (437)
Q Consensus       100 d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~  179 (437)
                      +.++..++.+|++.|+...++.+.-.+.++ +..|.+.+|+||.|+..|+.+++++|++..++|++.+|.-|+|||+-|.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            456678899999999999999988888776 8999999999999999999999999999999999999999999999999


Q ss_pred             HcCcHHHHHHHHHcCC
Q 013760          180 KLGNTELFSLLKEAGA  195 (437)
Q Consensus       180 ~~~~~~i~~~L~~~ga  195 (437)
                      ..++.+++++|.++..
T Consensus       582 ~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQY  597 (622)
T ss_pred             hcCcHHHHHHHHHHhc
Confidence            9999999999987654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.68  E-value=1.6e-08  Score=103.41  Aligned_cols=93  Identities=26%  Similarity=0.312  Sum_probs=58.3

Q ss_pred             HHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCcccc
Q 013760           53 FLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL  132 (437)
Q Consensus        53 ~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~  132 (437)
                      ++-+.+.+..++.|..|+|+||+|+..|..+++++|+++|.++.......|.||||.|+.+|+.|++..|+.+|..+ ..
T Consensus        36 F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL-~i  114 (1267)
T KOG0783|consen   36 FSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL-RI  114 (1267)
T ss_pred             HHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCce-EE
Confidence            33444555556666666666666666666666666666666665443335666666666666666666666666554 56


Q ss_pred             CCCCCChHHHHHHH
Q 013760          133 EDNKGNTALHIAIK  146 (437)
Q Consensus       133 ~d~~G~TpLh~A~~  146 (437)
                      +|++|..||.+-++
T Consensus       115 ~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  115 KDKEGLSPLQFLSR  128 (1267)
T ss_pred             ecccCCCHHHHHhh
Confidence            66666666666555

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.65  E-value=8.8e-08  Score=92.84  Aligned_cols=92  Identities=33%  Similarity=0.420  Sum_probs=79.6

Q ss_pred             CCCCCcH------HHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCC
Q 013760          100 DKKGQTA------LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGES  173 (437)
Q Consensus       100 d~~g~t~------Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T  173 (437)
                      |.+|.+.      ||..++.|+.+..-.|+..|++.....-..|+||||.|++.|+..-+++|+- +|+|+++.|.+|.|
T Consensus       124 DdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~v-YGAD~~a~d~~Gmt  202 (669)
T KOG0818|consen  124 DDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAV-YGADPGAQDSSGMT  202 (669)
T ss_pred             CcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhh-ccCCCCCCCCCCCc
Confidence            5555544      8999999999999999999988755555689999999999999999999988 99999999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHH
Q 013760          174 PLDVAEKLGNTELFSLLKE  192 (437)
Q Consensus       174 ~L~~A~~~~~~~i~~~L~~  192 (437)
                      |+++|...|+.++.+-|.+
T Consensus       203 P~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  203 PVDYARQGGHHELAERLVE  221 (669)
T ss_pred             HHHHHHhcCchHHHHHHHH
Confidence            9999999999887776554

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.60  E-value=3.4e-08  Score=95.24  Aligned_cols=89  Identities=26%  Similarity=0.269  Sum_probs=46.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCC
Q 013760           35 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ  114 (437)
Q Consensus        35 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g  114 (437)
                      +..++.+|+..|++..++.+.=.|.++ +.+|.+.+|+||+||..|+++++++|++........+|+.|+|||.-|...+
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            344555555555555555555445544 4455555555555555555555555555444333344555555555555555


Q ss_pred             CHHHHHHhhc
Q 013760          115 NEDIVLELIR  124 (437)
Q Consensus       115 ~~~iv~~Ll~  124 (437)
                      +.+++++|-+
T Consensus       585 h~~v~k~L~~  594 (622)
T KOG0506|consen  585 HKEVVKLLEE  594 (622)
T ss_pred             cHHHHHHHHH
Confidence            5555555443

>PF13606 Ank_3: Ankyrin repeat

Probab=98.59  E-value=5.2e-08  Score=58.99  Aligned_cols=29  Identities=52%  Similarity=0.841  Sum_probs=21.3

Q ss_pred             CCChHHHHHHHcCcHHHHHHhhcccCCCcc
Q 013760          136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVN  165 (437)
Q Consensus       136 ~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n  165 (437)
                      +|+||||+|++.|+.+++++|++ .|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~-~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLE-HGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHH-cCCCCC
Confidence            47777777777777777777777 577765

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.58  E-value=3.8e-08  Score=100.66  Aligned_cols=93  Identities=30%  Similarity=0.353  Sum_probs=82.4

Q ss_pred             HHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCC-CCChHHHHHHHcCcHHHHHHhhcccCCCc
Q 013760           86 KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN-KGNTALHIAIKKGRTQIVRCLLSIEGIDV  164 (437)
Q Consensus        86 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~  164 (437)
                      -++-+.+.+.....|..|+|+||+|+..+..+++++|+++|.++ +.+|. .|+||||-|+.+|+.+++-.||. +|+.+
T Consensus        35 ~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~-~g~SL  112 (1267)
T KOG0783|consen   35 GFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLS-KGRSL  112 (1267)
T ss_pred             HHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHh-cCCce
Confidence            34445566666677999999999999999999999999999887 55555 79999999999999999999999 89999


Q ss_pred             cccccCCCCHHHHHHH
Q 013760          165 NSLNKAGESPLDVAEK  180 (437)
Q Consensus       165 n~~n~~G~T~L~~A~~  180 (437)
                      .++|++|..||+..++
T Consensus       113 ~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  113 RIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             EEecccCCCHHHHHhh
Confidence            9999999999999887

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.54  E-value=9.7e-08  Score=59.37  Aligned_cols=33  Identities=42%  Similarity=0.741  Sum_probs=26.8

Q ss_pred             CCChHHHHHHHcCcHHHHHHhhcccCCCcccccc
Q 013760          136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK  169 (437)
Q Consensus       136 ~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~  169 (437)
                      +|+||||+|+..|+.+++++|++ .|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLK-HGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHH-TTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHH-CcCCCCCCCC
Confidence            57888888888888888888888 7888887764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.52  E-value=2.5e-07  Score=89.80  Aligned_cols=85  Identities=22%  Similarity=0.202  Sum_probs=56.0

Q ss_pred             hhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHH
Q 013760            4 IHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE   83 (437)
Q Consensus         4 Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~   83 (437)
                      ||..++.|+ +|.--.||..+.+....-.+.|.||||.|++.|+..-+++|+=+|+++ ...|.+|+||+.+|-..||-+
T Consensus       137 LhasvRt~n-let~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  137 LHSSVRTGN-LETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHhhccc-HHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCCCCCcHHHHHHhcCchH
Confidence            566667777 666666666665554444556677777777777776667776666666 456666777777777777766


Q ss_pred             HHHHHHh
Q 013760           84 VVKALVS   90 (437)
Q Consensus        84 iv~~Ll~   90 (437)
                      +.+.|++
T Consensus       215 laeRl~e  221 (669)
T KOG0818|consen  215 LAERLVE  221 (669)
T ss_pred             HHHHHHH
Confidence            6666554

>PF13606 Ank_3: Ankyrin repeat

Probab=98.52  E-value=1.3e-07  Score=57.21  Aligned_cols=26  Identities=42%  Similarity=0.611  Sum_probs=12.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCC
Q 013760           69 GKTVLHSAARMGHLEVVKALVSKDPS   94 (437)
Q Consensus        69 G~tpLh~Aa~~g~~~iv~~Ll~~~~~   94 (437)
                      |+||||+||+.|+.|++++|++++++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            44555555555555555555544444

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.52  E-value=2.2e-07  Score=91.23  Aligned_cols=88  Identities=22%  Similarity=0.341  Sum_probs=69.2

Q ss_pred             hhhHHHHcCCcHHHHHHHH-hhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            3 MIHFMWQQSRVILVLKELL-GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         3 ~Lh~A~~~g~~~~~vk~Ll-~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      |||.++...+ .+-+...+ .+-...+...|..|+||||+|+..||.+.++.|+..|++. .++|++|++|||.|+..|+
T Consensus        23 ~lh~~~~~~~-~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   23 PLHWAVVTTD-SDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             ccchhhhccc-hhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence            4788888887 55554443 3333345678888899999999999999999999988887 7788899999999999999


Q ss_pred             HHHHHHHHhCC
Q 013760           82 LEVVKALVSKD   92 (437)
Q Consensus        82 ~~iv~~Ll~~~   92 (437)
                      .+++..++.+.
T Consensus       101 ~q~i~~vlr~~  111 (560)
T KOG0522|consen  101 EQIITEVLRHL  111 (560)
T ss_pred             HHHHHHHHHHh
Confidence            88888887764

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.49  E-value=2.9e-07  Score=90.95  Aligned_cols=92  Identities=26%  Similarity=0.378  Sum_probs=78.6

Q ss_pred             HHHHHHhCCCHHHHHHhhcCCCC--cc-ccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcC
Q 013760          106 ALHMAVKGQNEDIVLELIRPDPS--VL-KLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG  182 (437)
Q Consensus       106 ~Lh~A~~~g~~~iv~~Ll~~~~~--~~-~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~  182 (437)
                      -|.-|+...+...+..|+.+|..  +. ...+.+|+|+||+|++.|+..+.++|+- +|+|+.++|.+|+|+|.+|...|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW-yg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW-YGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH-hCccceecccCCchhhhhHhhcc
Confidence            35567777778888888887742  21 2346688999999999999999999996 99999999999999999999999


Q ss_pred             cHHHHHHHHHcCCCcc
Q 013760          183 NTELFSLLKEAGAAHS  198 (437)
Q Consensus       183 ~~~i~~~L~~~ga~~~  198 (437)
                      ..+++++|+.+|....
T Consensus       706 sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  706 SQECIDVLLQYGCPDE  721 (749)
T ss_pred             cHHHHHHHHHcCCCcc
Confidence            9999999999998654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.42  E-value=5.5e-07  Score=88.52  Aligned_cols=88  Identities=27%  Similarity=0.348  Sum_probs=64.9

Q ss_pred             cHHHHHHHcCCHHHHHH-HHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCc
Q 013760           71 TVLHSAARMGHLEVVKA-LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR  149 (437)
Q Consensus        71 tpLh~Aa~~g~~~iv~~-Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~  149 (437)
                      .|+|+++.....+-... |...-.......|..|+||||+|+.-|+.+.++.|+..++++ ..++++|++|||-|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence            45888887776654444 333323333456788888888888888888888888888776 6788888888888888888


Q ss_pred             HHHHHHhhcc
Q 013760          150 TQIVRCLLSI  159 (437)
Q Consensus       150 ~~iv~~Ll~~  159 (437)
                      .+++..++.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            8887777763

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.33  E-value=9e-07  Score=54.94  Aligned_cols=28  Identities=39%  Similarity=0.590  Sum_probs=13.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 013760           69 GKTVLHSAARMGHLEVVKALVSKDPSTG   96 (437)
Q Consensus        69 G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~   96 (437)
                      |.||||+|+..|+.+++++|++.++++.
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~   29 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADIN   29 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            4445555555555555555544444443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.22  E-value=8.2e-07  Score=93.97  Aligned_cols=152  Identities=23%  Similarity=0.163  Sum_probs=92.6

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHhc-CCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcH
Q 013760           28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEI-DSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTA  106 (437)
Q Consensus        28 ~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~  106 (437)
                      .......|.|-||+++..++.-+++.+++. |... ...|.+|...+|. |..++.+..-+++.........+|.+|+||
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcc
Confidence            334556677777777777777777777775 3333 3456666666666 444555666666655444444557777777


Q ss_pred             HHHHHhCCCHHHHHHhhcCCCCc-----cccCCCCCChHHHHHHHcCcHHHHHHhhccc------CCCccccccCCCCHH
Q 013760          107 LHMAVKGQNEDIVLELIRPDPSV-----LKLEDNKGNTALHIAIKKGRTQIVRCLLSIE------GIDVNSLNKAGESPL  175 (437)
Q Consensus       107 Lh~A~~~g~~~iv~~Ll~~~~~~-----~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~------g~~~n~~n~~G~T~L  175 (437)
                      ||+|+..|+..++..|.+.+++.     ....+..|.|+--+|-.+|+..+..+|-+..      ....+..+..+.+|.
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~~L~~~~~~~~~~~~~~s~~~~~  724 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEKALSAHLSNLELADPNLSADSEE  724 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhhHHHHHHhhccccccccCCCchh
Confidence            77777777777777777554321     1233446777777777777777666665420      011122234456666


Q ss_pred             HHHHHc
Q 013760          176 DVAEKL  181 (437)
Q Consensus       176 ~~A~~~  181 (437)
                      +-|.+.
T Consensus       725 ~~~~~t  730 (975)
T KOG0520|consen  725 DKAEKT  730 (975)
T ss_pred             hhhhhc
Confidence            665544

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.20  E-value=7.9e-06  Score=84.99  Aligned_cols=121  Identities=21%  Similarity=0.201  Sum_probs=69.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCc---hhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHH
Q 013760           35 CSTALHTAAAQGHIDVVNFLLEIDSN---LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV  111 (437)
Q Consensus        35 g~TpLh~Aa~~g~~~iv~~Ll~~~~~---~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  111 (437)
                      +.--...|+..|+...|+..++....   -.++.|.-|+++|+.|..+.+.|++++|++..-+.        ..+|..|+
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI   96 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAI   96 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHH
Confidence            33345667777777777777765433   12456666777777777777777777777664332        34677777


Q ss_pred             hCCCHHHHHHhhcCCCCcc---------ccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCc
Q 013760          112 KGQNEDIVLELIRPDPSVL---------KLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDV  164 (437)
Q Consensus       112 ~~g~~~iv~~Ll~~~~~~~---------~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~  164 (437)
                      ..|..++|+.++.+....-         ...-..+-|||.+||..++.||+++|+. .|+.+
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~-kg~~i  157 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLT-RGHCI  157 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHH-cCCCC
Confidence            7777777777766532210         0111123455555555555555555555 34433

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.19  E-value=4e-06  Score=83.07  Aligned_cols=90  Identities=24%  Similarity=0.296  Sum_probs=68.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCchh---HhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHh
Q 013760           36 STALHTAAAQGHIDVVNFLLEIDSNLA---KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVK  112 (437)
Q Consensus        36 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~---~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  112 (437)
                      ..-|.-|+...++..+-+||.+|....   ...+.+|.|+||+||..|++.+.++|+=.+.|... +|.+|+|+|.+|-+
T Consensus       625 gqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~-rda~g~t~l~yar~  703 (749)
T KOG0705|consen  625 GQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMA-RDAHGRTALFYARQ  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcccee-cccCCchhhhhHhh
Confidence            446777777778888888888775431   23355778888888888888888888877777764 48888888888888


Q ss_pred             CCCHHHHHHhhcCC
Q 013760          113 GQNEDIVLELIRPD  126 (437)
Q Consensus       113 ~g~~~iv~~Ll~~~  126 (437)
                      .|..|++..|+++|
T Consensus       704 a~sqec~d~llq~g  717 (749)
T KOG0705|consen  704 AGSQECIDVLLQYG  717 (749)
T ss_pred             cccHHHHHHHHHcC
Confidence            88888888888876

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.15  E-value=2.3e-06  Score=91.14  Aligned_cols=91  Identities=35%  Similarity=0.475  Sum_probs=82.5

Q ss_pred             CCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHH
Q 013760          101 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEK  180 (437)
Q Consensus       101 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~  180 (437)
                      ..|.|+||.|+.++..-.++.|++.++++ |..|..|+||||.+...|+...+..|++ +|++.++.|.+|.+|+++|..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~~~~ll~-~~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSIACLLLK-RGADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccchhhhhcc-ccccccccCccCcchhhHHhh
Confidence            46899999999999999999999999884 9999999999999999999999999999 999999999999999999988


Q ss_pred             cCcHHHHHHHHHc
Q 013760          181 LGNTELFSLLKEA  193 (437)
Q Consensus       181 ~~~~~i~~~L~~~  193 (437)
                      ..+.+++-++.-.
T Consensus       732 ~~~~d~~~l~~l~  744 (785)
T KOG0521|consen  732 AANADIVLLLRLA  744 (785)
T ss_pred             hccccHHHHHhhh
Confidence            7777766655444

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.14  E-value=2.5e-06  Score=90.35  Aligned_cols=126  Identities=21%  Similarity=0.303  Sum_probs=100.5

Q ss_pred             hhcCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHH
Q 013760           65 ARNNGKTVLHSAARMGHLEVVKALVSK-DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI  143 (437)
Q Consensus        65 ~~~~G~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~  143 (437)
                      ....|+|-+|.++..++.-.++.+++. +.... ..|.+|...+|+ |..++.+...+++.....-++.+|.+|+||||+
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~-eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDL-ELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCch-hhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            345689999999999999999999986 44333 348888889999 555566777777766666669999999999999


Q ss_pred             HHHcCcHHHHHHhhcccCCC------ccccccCCCCHHHHHHHcCcHHHHHHHHHc
Q 013760          144 AIKKGRTQIVRCLLSIEGID------VNSLNKAGESPLDVAEKLGNTELFSLLKEA  193 (437)
Q Consensus       144 A~~~g~~~iv~~Ll~~~g~~------~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~  193 (437)
                      |+..|+..++..|++ .|++      ++..+-.|.|+-++|...|+..+..+|.+.
T Consensus       648 Aa~~G~e~l~a~l~~-lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  648 AAFRGREKLVASLIE-LGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HhhcCHHHHHHHHHH-hccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999996 4443      444555699999999999988887777654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.08  E-value=1.2e-05  Score=83.70  Aligned_cols=117  Identities=17%  Similarity=0.147  Sum_probs=96.6

Q ss_pred             hhHHHHcCCcHHHHHHHHhhCCc---ccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            4 IHFMWQQSRVILVLKELLGEFPN---LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         4 Lh~A~~~g~~~~~vk~Ll~~~~~---~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      .-.|+.+|+ .-.|+..++....   .+++.|.-|.++|+.|..+.+.|++++|++++...        ..+|-.|+..|
T Consensus        29 fL~a~E~gd-~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~   99 (822)
T KOG3609|consen   29 FLLAHENGD-VPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVG   99 (822)
T ss_pred             HHHHHHcCC-hHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHH
Confidence            346899999 9999999988654   46789999999999999999999999999886543        24899999999


Q ss_pred             CHHHHHHHHhCCCCCC---------cccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCc
Q 013760           81 HLEVVKALVSKDPSTG---------FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV  129 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~---------~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~  129 (437)
                      .++.|+.++.+.....         ...-..+-|||.+||..++.||++.|++++..+
T Consensus       100 ~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen  100 SVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            9999999998743321         111245789999999999999999999988654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.90  E-value=2e-05  Score=74.62  Aligned_cols=76  Identities=24%  Similarity=0.294  Sum_probs=62.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCC
Q 013760           36 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ  114 (437)
Q Consensus        36 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g  114 (437)
                      .--|..||+.|+.|.|+.|++.|.++ +..|....+||.+|+..||.++|++|+++|+-+... .-+|.-+ |+++.+.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rd-tf~G~RC-~YgaLnd  112 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRD-TFDGDRC-HYGALND  112 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCccccc-ccCcchh-hhhhhhH
Confidence            44689999999999999999999988 778999999999999999999999999999887532 3456555 4555443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.89  E-value=3.4e-05  Score=66.49  Aligned_cols=67  Identities=27%  Similarity=0.277  Sum_probs=55.7

Q ss_pred             cccCCCCCChHHHHHHHcCcHHHHHHhhcccC-CCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCc
Q 013760          130 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG-IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  197 (437)
Q Consensus       130 ~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g-~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~  197 (437)
                      +|.+|..|+|||+.|+..|+.+.+.+|+. +| +++...|..|.+++.+|.+.|..+++..|.+.-.+.
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllg-rg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLG-RGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhc-cCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            47888888888888888888888888888 56 788888888888888888888888888888775443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.80  E-value=2.8e-05  Score=73.58  Aligned_cols=75  Identities=24%  Similarity=0.158  Sum_probs=60.7

Q ss_pred             hhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            3 MIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         3 ~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      -|..||+.|+ +|.|+.|++.+-+ ++.+|.-.++||.+|+..||.++|++||++|+-. ..-.-+|.-+ |+++.+.+
T Consensus        39 elceacR~GD-~d~v~~LVetgvn-VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC-~YgaLnd~  113 (516)
T KOG0511|consen   39 ELCEACRAGD-VDRVRYLVETGVN-VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRC-HYGALNDR  113 (516)
T ss_pred             HHHHHhhccc-HHHHHHHHHhCCC-cchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchh-hhhhhhHH
Confidence            3789999999 9999999997655 6789999999999999999999999999999865 2223345544 66666543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.79  E-value=2.3e-05  Score=83.68  Aligned_cols=116  Identities=24%  Similarity=0.253  Sum_probs=88.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHH
Q 013760           32 DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV  111 (437)
Q Consensus        32 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  111 (437)
                      ..++.+++-.|...-+..++.+..         .-..|.|+||.|+..|...++++|++++++.+. .|..|+||||.+.
T Consensus       628 ~~~~~~~~~~~~~~~~~~~~n~~~---------~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~-~d~~g~~plh~~~  697 (785)
T KOG0521|consen  628 SSDGECLPRIATALAHGCCENWPV---------VLCIGCSLLHVAVGTGDSGAVELLLQNGADVNA-LDSKGRTPLHHAT  697 (785)
T ss_pred             ccCccchhhhhhhhcchhhhccch---------hhhcccchhhhhhccchHHHHHHHHhcCCcchh-hhccCCCcchhhh
Confidence            345666666665554444333221         223578899999999999999999999999664 4899999999999


Q ss_pred             hCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhc
Q 013760          112 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  158 (437)
Q Consensus       112 ~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  158 (437)
                      ..|+...+..+++++++. +..|.+|.+||++|....+.+++-++..
T Consensus       698 ~~g~~~~~~~ll~~~a~~-~a~~~~~~~~l~~a~~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  698 ASGHTSIACLLLKRGADP-NAFDPDGKLPLDIAMEAANADIVLLLRL  743 (785)
T ss_pred             hhcccchhhhhccccccc-cccCccCcchhhHHhhhccccHHHHHhh
Confidence            999999999999988776 8889999999999987776666665544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.72  E-value=6.7e-05  Score=64.69  Aligned_cols=70  Identities=23%  Similarity=0.261  Sum_probs=59.9

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCc
Q 013760           28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF   97 (437)
Q Consensus        28 ~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~   97 (437)
                      ++.+|..|+|||+.|+..|..+.+.+|+++|.......|..|.+++-+|-+.|+.++++.|.+...+...
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~   74 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSH   74 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCC
Confidence            5678999999999999999999999999999555578899999999999999999999999887555443

>smart00248 ANK ankyrin repeats

Probab=96.49  E-value=0.005  Score=35.33  Aligned_cols=25  Identities=56%  Similarity=0.733  Sum_probs=12.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCC
Q 013760           69 GKTVLHSAARMGHLEVVKALVSKDP   93 (437)
Q Consensus        69 G~tpLh~Aa~~g~~~iv~~Ll~~~~   93 (437)
                      |.||+|+|+..|+.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4445555555555555555554443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.46  E-value=0.0043  Score=35.63  Aligned_cols=28  Identities=36%  Similarity=0.631  Sum_probs=23.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCch
Q 013760           34 SCSTALHTAAAQGHIDVVNFLLEIDSNL   61 (437)
Q Consensus        34 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~   61 (437)
                      +|.||||+|+..|+.++++.|++.+.+.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4788999999999999999999887653

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.11  E-value=0.044  Score=54.34  Aligned_cols=63  Identities=27%  Similarity=0.328  Sum_probs=49.3

Q ss_pred             HHHHHHhhcCCCCc-----cccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHH
Q 013760          116 EDIVLELIRPDPSV-----LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE  179 (437)
Q Consensus       116 ~~iv~~Ll~~~~~~-----~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~  179 (437)
                      ...+++|.+.+.+.     ....|..--|+||+|+..|..+++.+||+ .|+|+..+|..|.||.+++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Le-eg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLE-EGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHH-hcCCchhcccCCCCcccccc
Confidence            44566666554332     12234445699999999999999999999 78999999999999999987

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.84  E-value=0.031  Score=55.36  Aligned_cols=41  Identities=27%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHH
Q 013760           70 KTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV  111 (437)
Q Consensus        70 ~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  111 (437)
                      .|+||+|+..|..++|.+||+.+.|+... |..|+||..++.
T Consensus       431 sT~LH~aa~qg~~k~v~~~Leeg~Dp~~k-d~~Grtpy~ls~  471 (591)
T KOG2505|consen  431 STFLHYAAAQGARKCVKYFLEEGCDPSTK-DGAGRTPYSLSA  471 (591)
T ss_pred             chHHHHHHhcchHHHHHHHHHhcCCchhc-ccCCCCcccccc
Confidence            34555555555555555555555444432 455555544444

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.80  E-value=0.17  Score=45.36  Aligned_cols=117  Identities=23%  Similarity=0.353  Sum_probs=81.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCC----CccccCCCCCChHHHHHHH-
Q 013760           72 VLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP----SVLKLEDNKGNTALHIAIK-  146 (437)
Q Consensus        72 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~----~~~~~~d~~G~TpLh~A~~-  146 (437)
                      .|--|+...+.+-+..++...        ++-.+++-+|+.++..+++.+|+....    ++....  .+.--+-++.. 
T Consensus       156 sledAV~AsN~~~i~~~VtdK--------kdA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~--~~~ydieY~LS~  225 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK--------KDAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASME--KELYDIEYLLSE  225 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch--------HHHHHHHHHHhcccHHHHHHHHHhhcceecchhhhcC--cchhhHHHHHhh
Confidence            356677777777666665432        234578899999999999999997642    222211  12223333332 


Q ss_pred             -cCcHHHHHHhhcccCCCccc---cccCCCCHHHHHHHcCcHHHHHHHHHcCCCcc
Q 013760          147 -KGRTQIVRCLLSIEGIDVNS---LNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  198 (437)
Q Consensus       147 -~g~~~iv~~Ll~~~g~~~n~---~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~  198 (437)
                       ..+..++++.++..-+++|.   +-+.|.|.|+-|.+.++.+++.+|+++||-..
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~~  281 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAISG  281 (284)
T ss_pred             cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcccc
Confidence             34668888888855567774   45789999999999999999999999999543

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=92.42  E-value=0.97  Score=39.43  Aligned_cols=137  Identities=18%  Similarity=0.089  Sum_probs=80.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHH
Q 013760           38 ALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED  117 (437)
Q Consensus        38 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~  117 (437)
                      -|..|+..+-+.+++..-+...+.    -...++-...||+..+.|+|+++-+.-.-      .+-.+.+-+|...++.+
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~i------~~~~~iFdIA~~~kDls  118 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLHI------YNPEDIFDIAFAKKDLS  118 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccCC------CCchhhhhhhhhccchh
Confidence            456677888888777765542221    12345677788888888888888433221      22345667777777766


Q ss_pred             HHH----HhhcCCCCccccCCC--CCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHH
Q 013760          118 IVL----ELIRPDPSVLKLEDN--KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK  191 (437)
Q Consensus       118 iv~----~Ll~~~~~~~~~~d~--~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~  191 (437)
                      ...    .+....... ...|.  --+--|+.|+..|-...+...++ +|-+++.      ++|..|++.++.+|+.+++
T Consensus       119 LyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlk-ygg~~~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  119 LYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLK-YGGNVDI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHH-cCCcccH------HHHHHHHHhhHHHHHHHhh
Confidence            521    112211110 00010  00124667788888777777777 5555553      6788888888888877765


Q ss_pred             H
Q 013760          192 E  192 (437)
Q Consensus       192 ~  192 (437)
                      .
T Consensus       191 ~  191 (192)
T PF03158_consen  191 R  191 (192)
T ss_pred             c
Confidence            3

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.52  E-value=1  Score=40.51  Aligned_cols=46  Identities=22%  Similarity=0.260  Sum_probs=23.5

Q ss_pred             HHHHHHhhcCCCCccc---cCCCCCChHHHHHHHcCcHHHHHHhhcccCC
Q 013760          116 EDIVLELIRPDPSVLK---LEDNKGNTALHIAIKKGRTQIVRCLLSIEGI  162 (437)
Q Consensus       116 ~~iv~~Ll~~~~~~~~---~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~  162 (437)
                      ..++++.+.+|-..+|   .+-+.|.|.|.-|..+++.+++..||+ +|+
T Consensus       230 ~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk-~GA  278 (284)
T PF06128_consen  230 YKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLK-YGA  278 (284)
T ss_pred             HHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHH-cCc
Confidence            3455555555432222   123345566666666666666666665 444

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=88.11  E-value=2.7  Score=36.70  Aligned_cols=136  Identities=17%  Similarity=0.191  Sum_probs=91.5

Q ss_pred             hhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHH
Q 013760            4 IHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE   83 (437)
Q Consensus         4 Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~   83 (437)
                      |..|+..+- +.++++.=+.-.+    .-....+-.-.||+..+.|+|+++-+.   + .+  .+-.+-...|...++.+
T Consensus        50 l~HAVk~nm-L~ILqkyke~L~~----~~~~~q~LFElAC~~qkydiV~WI~qn---L-~i--~~~~~iFdIA~~~kDls  118 (192)
T PF03158_consen   50 LYHAVKYNM-LSILQKYKEDLEN----ERYLNQELFELACEEQKYDIVKWIGQN---L-HI--YNPEDIFDIAFAKKDLS  118 (192)
T ss_pred             HHHHHHcCc-HHHHHHHHHHhhc----chhHHHHHHHHHHHHccccHHHHHhhc---c-CC--CCchhhhhhhhhccchh
Confidence            567888888 8888776654321    112456778899999999999999432   2 11  12345677888888877


Q ss_pred             HHH----HHHhCCCCCCcccCCC--CCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhh
Q 013760           84 VVK----ALVSKDPSTGFRTDKK--GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL  157 (437)
Q Consensus        84 iv~----~Ll~~~~~~~~~~d~~--g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll  157 (437)
                      +..    .+++...... ..|..  -..-|..|+..|-...+...++.|+++ +.      ++|-.|+.+++-.++.+++
T Consensus       119 LyslGY~l~~~~~~~~~-~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~-~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  119 LYSLGYKLLFNRMMSEH-NEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNV-DI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHHHHhhccccc-ccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcc-cH------HHHHHHHHhhHHHHHHHhh
Confidence            532    2233321110 00110  013467899999999999999999876 22      7999999999999999887


Q ss_pred             c
Q 013760          158 S  158 (437)
Q Consensus       158 ~  158 (437)
                      .
T Consensus       191 ~  191 (192)
T PF03158_consen  191 R  191 (192)
T ss_pred             c
Confidence            4

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=86.87  E-value=1.3  Score=32.99  Aligned_cols=46  Identities=20%  Similarity=0.286  Sum_probs=25.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhC
Q 013760           38 ALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK   91 (437)
Q Consensus        38 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~   91 (437)
                      -+..|+..|+.|+++.+++.+...        ...+..|+...+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~~~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKNKPD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            456666666666666666543111        2346666666666666666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=83.96  E-value=1.4  Score=32.69  Aligned_cols=46  Identities=28%  Similarity=0.396  Sum_probs=26.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcC
Q 013760           72 VLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP  125 (437)
Q Consensus        72 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~  125 (437)
                      .+..|+.+|+.|+++.+++.+..     +   ...+..|+...+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~~~-----~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKNKP-----D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhcc-----H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            45666666666666666654311     1   2356666666666666666654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	437
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-18
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-17
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-05
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-17
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-17
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-17
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		8e-15
2xee_A	157	Structural Determinants For Improved Thermal Stabil		7e-14
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-06
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-13
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-06
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-12
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		5e-12
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		5e-12
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		9e-12
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-11
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-11
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		9e-11
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-05
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-10
1uoh_A	226	Human Gankyrin Length = 226		2e-10
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-10
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-10
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-10
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-10
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-10
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-08
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		4e-10
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		7e-10
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-09
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-09
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-09
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-09
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-08
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-09
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		9e-09
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-07
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-08
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-07
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-08
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-08
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		5e-05
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		3e-08
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		4e-08
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		4e-08
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		6e-08
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		3e-07
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-07
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		4e-07
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		4e-07
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		4e-07
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		5e-07
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		7e-07
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-05
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		9e-07
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		6e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-05
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		3e-06
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		4e-06
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		7e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		4e-06
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		5e-06
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		6e-06
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		6e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		6e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-05
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-04
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		1e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		1e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		1e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		1e-05
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		2e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		4e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		5e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		9e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		6e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		9e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		7e-05
3ljn_A	364	Ankyrin Repeat Protein From Leishmania Major Length		1e-04
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		2e-04
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		3e-04
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		3e-04
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		3e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		3e-04
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		3e-04
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		3e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		4e-04
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		4e-04
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		4e-04
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		5e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		6e-04
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		6e-04
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		7e-04
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		7e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 92/154 (59%), Gaps = 4/154 (2%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 101
           AA  G+ D V  L+E  +++   + ++G+T LH AA+ GH E+VK L+SK      + D 
Sbjct: 11  AAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DS 68
Query: 102 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 161
            G+T LH A K  +++IV  LI     V   +D+ G T LH A K+G  +IV+ L+S +G
Sbjct: 69  DGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLIS-KG 126
Query: 162 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            DVN+ +  G +PLD+A + GN E+  LL++ G 
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 12/158 (7%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRT 99
           AA  G+ D V  LLE  +++   + ++GKT LH AA  GH EVVK L+S+  DP+     
Sbjct: 11  AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA---K 66
Query: 100 DKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 157
           D  G+T LH+A +  ++++V  L+    DP+    +D+ G T LH+A + G  ++V+ LL
Sbjct: 67  DSDGKTPLHLAAENGHKEVVKLLLSQGADPNA---KDSDGKTPLHLAAENGHKEVVKLLL 123
Query: 158 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           S +G D N+ +  G +PLD+A + GN E+  LL++ G 
Sbjct: 124 S-QGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 110 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 169
           A +  N+D V +L+     V    D+ G T LH+A + G  ++V+ LLS +G D N+ + 
Sbjct: 11  AAENGNKDRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLS-QGADPNAKDS 68
Query: 170 AGESPLDVAEKLGNTELFSLLKEAGA-AHSKD-HGKPP 205
            G++PL +A + G+ E+  LL   GA  ++KD  GK P
Sbjct: 69  DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTP 106

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 92/158 (58%), Gaps = 12/158 (7%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRT 99
           AA  G+ D V  LLE  ++    + ++G+T LH AA  GH E+VK L+SK  DP+     
Sbjct: 11  AAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---K 66
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRP--DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 157
           D  G+T LH A +  +++IV  L+    DP+    +D+ G T LH A + G  +IV+ LL
Sbjct: 67  DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---KDSDGRTPLHYAAENGHKEIVKLLL 123
Query: 158 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           S +G D N+ +  G +PLD+A + GN E+  LL++ G 
Sbjct: 124 S-KGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/128 (41%), Positives = 76/128 (59%), Gaps = 3/128 (2%)
Query: 68  NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 127
           NG+T LH AAR GHLEVVK L+        + DK G+T LH+A +  + ++V  L+    
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 128 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 187
            V   +D  G T LH+A + G  ++V+ LL   G DVN+ +K G +PL +A + G+ E+ 
Sbjct: 60  DV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 188 SLLKEAGA 195
            LL EAGA
Sbjct: 118 KLLLEAGA 125

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 4/154 (2%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 101
           AA  G+ D V  L+E  +++   + ++G+T LH AA  GH EVVK L+SK      + D 
Sbjct: 11  AAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DS 68
Query: 102 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 161
            G+T LH A +  ++++V  LI     V   +D+ G T LH A + G  ++V+ L+S +G
Sbjct: 69  DGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLIS-KG 126
Query: 162 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            DVN+ +  G +PLD+A + GN E+  LL++ G 
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 10/186 (5%)
Query: 16  VLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL 73
           ++K LL  G  PN+   +++   T LH AA  GH +V  +LL+  + +   A+++ +T L
Sbjct: 29  IVKNLLQRGASPNV---SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-QTPL 84
Query: 74  HSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLE 133
           H AAR+GH  +VK L+  + +    T   G T LH+A +  + + VL L+  + S   + 
Sbjct: 85  HCAARIGHTNMVKLLLENNANPNLAT-TAGHTPLHIAAREGHVETVLALLEKEASQACM- 142
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS-LLKE 192
             KG T LH+A K G+ ++   LL  +    N+  K G +PL VA    N ++   LL  
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLERDA-HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201
Query: 193 AGAAHS 198
            G+ HS
Sbjct: 202 GGSPHS 207

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 88/154 (57%), Gaps = 8/154 (5%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKI-ARN-NGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
           AA  G  D V  L+   +N A + A++ +G T LH AAR GHLE+V+ L+        + 
Sbjct: 9   AARAGQDDEVRILM---ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK- 64
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
           DK G T LH+A +  + +IV  L++    V   +D  G T LH+A ++G  +IV  LL  
Sbjct: 65  DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
            G DVN+ +K G++P D+A   GN ++  +L++A
Sbjct: 124 -GADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
           G+  L  A  GQ++++   ++  + + +  +D  G T LH+A ++G  +IV  LL   G 
Sbjct: 3   GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GA 59
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA---AHSKDHGKP 204
           DVN+ +K G +PL +A + G+ E+  +L +AGA   A  KD   P
Sbjct: 60  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 104

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKI-ARN-NGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
           AA  G  D V  L+   +N A + A++ +G T LH AAR GHLE+V+ L+        + 
Sbjct: 9   AARAGQDDEVRILM---ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK- 64
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
           DK G T LH+A +  + +IV  L++    V   +D  G T LH+A ++G  +IV  LL  
Sbjct: 65  DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
            G DVN+ +K G++P D+A + G+ ++  +L++A
Sbjct: 124 -GADVNAQDKFGKTPFDLAIREGHEDIAEVLQKA 156

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
           G+  L  A  GQ++++   ++  + + +  +D  G T LH+A ++G  +IV  LL   G 
Sbjct: 3   GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GA 59
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA---AHSKDHGKP 204
           DVN+ +K G +PL +A + G+ E+  +L +AGA   A  KD   P
Sbjct: 60  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 104

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 8/152 (5%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKI-ARN-NGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
           AA  G  D V  L+   +N A + A++ +G T LH AAR GHLE+V+ L+        + 
Sbjct: 21  AARAGQDDEVRILM---ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK- 76
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
           DK G T LH+A +  + +IV  L++    V   +D  G T LH+A ++G  +IV  LL  
Sbjct: 77  DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKA 135
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
            G DVN+ +K G++  D++   GN +L  +L+
Sbjct: 136 -GADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
           G+  L  A  GQ++++   ++  + + +  +D  G T LH+A ++G  +IV  LL   G 
Sbjct: 15  GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GA 71
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA---AHSKDHGKP 204
           DVN+ +K G +PL +A + G+ E+  +L +AGA   A  KD   P
Sbjct: 72  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 116

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 8/157 (5%)
Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTV-LHSAARMGHLEVVKALVSKDPS 94
           S+ LH AA  G  D++  LL+  +N    ARN  + V LH A + GH +VVK L+  +  
Sbjct: 87  SSPLHVAALHGRADLIPLLLKHGANAG--ARNADQAVPLHLACQQGHFQVVKCLLDSNAK 144
Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
              + D  G T L  A  G + ++V  L++   S+    +NKGNTALH A+ +    +V 
Sbjct: 145 PN-KKDLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVE 202
Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
            LL + G  V  LNK   + +D AE+  N+++  LL+
Sbjct: 203 LLL-LHGASVQVLNKRQRTAVDCAEQ--NSKIMELLQ 236

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
           AA  G  D V  L+   +N A +    N+G T LH AA  GHLE+V+ L+ K+ +    +
Sbjct: 21  AARAGQDDEVRILM---ANGADVNATDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNAS 76
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
           D  G T LH+A    + +IV  L++    V    DN G+T LH+A K G  +IV  LL  
Sbjct: 77  DLTGITPLHLAAATGHLEIVEVLLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVEVLLK- 134
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
            G DVN+ +K G++  D++   GN +L  +L+
Sbjct: 135 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
           AA  G  D V  L+   +N A +   +  G T LH AAR+GHLE+V+ L+ K+ +     
Sbjct: 21  AARAGQDDEVRILM---ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLL-KNGADVNAL 76
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
           D  G T LH+A K  + +IV  L++    V   +D  G+T LH+A   G  +IV  LL  
Sbjct: 77  DFSGSTPLHLAAKRGHLEIVEVLLKYGADV-NADDTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
            G DVN+ +K G++  D++   GN +L  +L+
Sbjct: 136 -GADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 4/166 (2%)
Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPST 95
           ST LH A  QGH+ +V  L++  ++ + I    G + +H AA+ GH  +V  L++K    
Sbjct: 77  STPLHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 96  GFRTDKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
               D+ G T L  A  +  + D    L+  + SV   +    NTALH A+  G T ++ 
Sbjct: 136 DM-MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 200
            LL   G +V++ N  GES LD+A++  N  + + L+EA  A   D
Sbjct: 195 LLLE-AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 8/153 (5%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKI-ARN-NGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
           AA  G  D V  L+   +N A + AR+  G T LH AA  GHLE+V+ L+        + 
Sbjct: 21  AARAGQDDEVRILM---ANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK- 76
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
           D  G T LH+A +  + +IV E++  + + +   D+ G T LH+A K+G  +IV  LL  
Sbjct: 77  DSLGVTPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK- 134
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
            G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 135 NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 4/151 (2%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 101
           AA  G  D V  L+   +++   A N G T LH AA  GHLE+V+ L+ K  +    +D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NAADNTGTTPLHLAAYSGHLEIVEVLL-KHGADVDASDV 78
Query: 102 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 161
            G T LH+A    + +IV  L++    V  + D+ G T LH+A K G  +IV  LL   G
Sbjct: 79  FGYTPLHLAAYWGHLEIVEVLLKNGADVNAM-DSDGMTPLHLAAKWGYLEIVEVLLK-HG 136
Query: 162 IDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
            DVN+ +K G++  D++   GN +L  +L++
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 83/153 (54%), Gaps = 8/153 (5%)
Query: 42  AAAQGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
           AA  G  D V  L+    D N A +    G T LH AA  GHLE+V+ L+ K+ +     
Sbjct: 21  AARAGRDDEVRILMANGADVNAADVV---GWTPLHLAAYWGHLEIVEVLL-KNGADVNAY 76
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
           D  G T LH+A    + +IV E++  + + +  +D+ G T LH+A  +G  +IV  LL  
Sbjct: 77  DTLGSTPLHLAAHFGHLEIV-EVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKY 135
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
            G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 136 -GADVNAQDKFGKTAFDISINNGNEDLAEILQK 167

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
           AA  G  D V  L+   +N A +   +  G T LH AA+ GHLE+V+ L+          
Sbjct: 21  AARAGQDDEVRILM---ANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN-AW 76
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
           D  G T LH+A    + +IV  L++    V   +D +G T LH+A   G  +IV  LL  
Sbjct: 77  DNYGATPLHLAADNGHLEIVEVLLKHGADV-NAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
            G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 136 -GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
           G+  L  A  GQ++++   ++  + + +   D  G+T LH+A K G  +IV  LL   G 
Sbjct: 15  GKKLLEAARAGQDDEV--RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKY-GA 71
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFS-LLKEAGAAHSKDH 201
           DVN+ +  G +PL +A   G+ E+   LLK     ++KD+
Sbjct: 72  DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDY 111

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
           AA  G  D V  L+   +N A +  ++  G T LH AA +GH E+V+ L+        R 
Sbjct: 21  AARAGQDDEVRILM---ANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR- 76
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
           D  G T LH+A    + +IV  L++    V   +D  G T LH+A  +G  +IV  LL  
Sbjct: 77  DTDGWTPLHLAADNGHLEIVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLK- 134
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
            G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 135 HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 77  ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV---LELIRPDPSVLKLE 133
           A  G LE +K  +  D S   RTD+  +TALH A    + +IV   L+L  P    +  +
Sbjct: 14  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----VNDK 69
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
           D+ G + LHIA   GR +IV+ LL  +G  VN++N+ G +PL  A      E+  +L E 
Sbjct: 70  DDAGWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 194 GA-AHSKDH 201
           GA   +KDH
Sbjct: 129 GANPDAKDH 137

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 77  ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV---LELIRPDPSVLKLE 133
           A  G L+ +K  +  D S   RTD+  +TALH A    + +IV   L+L  P    +  +
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----VNDK 69
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
           D+ G + LHIA   GR +IV+ LL ++G  VN++N+ G +PL  A      E+  +L E 
Sbjct: 70  DDAGWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 194 GA-AHSKDH 201
           GA   +KDH
Sbjct: 129 GANPDAKDH 137

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 77  ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV---LELIRPDPSVLKLE 133
           A  G LE +K  +  D S   RTD+  +TALH A    + +IV   L+L  P    +  +
Sbjct: 15  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----VNDK 70
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
           D+ G + LHIA   GR +IV+ LL  +G  VN++N+ G +PL  A      E+  +L E 
Sbjct: 71  DDAGWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 129
Query: 194 GA-AHSKDH 201
           GA   +KDH
Sbjct: 130 GANPDAKDH 138

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
           AA  G  D V  L+   +N A +  N+  G T LH     GHLE+++ L+ K  +    +
Sbjct: 21  AARAGQDDEVRILM---ANGADVNANDWFGITPLHLVVNNGHLEIIEVLL-KYAADVNAS 76
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
           DK G T LH+A    + +IV  L++    V  + D +G T LH+A + G  +IV  LL  
Sbjct: 77  DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAM-DYQGYTPLHLAAEDGHLEIVEVLLKY 135
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
            G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 136 -GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 8/153 (5%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
           AA  G  D V  L+   +N A +    ++GKT LH AA  GHLE+V+ L+          
Sbjct: 21  AARAGQDDEVRILM---ANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-AA 76
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
           DK G T LH+A    + +IV E++  + + +   D  G T LH+A   G  +IV  LL  
Sbjct: 77  DKMGDTPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKY 135
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
            G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 136 -GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 101
           AA  G  D V  L+   ++ A    + G+T LH AA +GHLE+V+ L+          D 
Sbjct: 9   AARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN-AVDT 66
Query: 102 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 161
            G T LH+A    + +IV  L++    V   +D  G T L++A   G  +IV  LL   G
Sbjct: 67  NGTTPLHLAASLGHLEIVEVLLKYGADV-NAKDATGITPLYLAAYWGHLEIVEVLLK-HG 124
Query: 162 IDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
            DVN+ +K G++  D++  +GN +L  +L+
Sbjct: 125 ADVNAQDKFGKTAFDISIDIGNEDLAEILQ 154

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 12/157 (7%)
Query: 69  GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
           GK +L  AAR G  + V+ L++         D  G+T LHMA    + +IV  L+R    
Sbjct: 3   GKKLL-EAARAGQDDEVRILMANGADAN-AYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
           V  ++ N G T LH+A   G  +IV  LL   G DVN+ +  G +PL +A   G+ E+  
Sbjct: 61  VNAVDTN-GTTPLHLAASLGHLEIVEVLLKY-GADVNAKDATGITPLYLAAYWGHLEIVE 118
Query: 189 LLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQ 225
           +L +        HG   +A  +  +T  DI  D+ ++
Sbjct: 119 VLLK--------HGADVNAQDKFGKTAFDISIDIGNE 147

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 80/169 (47%), Gaps = 5/169 (2%)
Query: 27  LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVK 86
           LV   D   ST LH AA +GH +VV +LL           + G T +  A    H+++VK
Sbjct: 69  LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 87  ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK 146
            L+SK      R D +    LH A      DI  E++      L   +  G++ LHIA +
Sbjct: 129 LLLSKGSDINIR-DNEENICLHWAAFSGCVDIA-EILLAAKCDLHAVNIHGDSPLHIAAR 186
Query: 147 KGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           + R   V   LS +  DV   NK GE+PL  A    N++++S L+ + A
Sbjct: 187 ENRYDCVVLFLSRDS-DVTLKNKEGETPLQCASL--NSQVWSALQMSKA 232

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
           T LH AA  GH++VV  LLE  +++      NG+T LH AAR GHLEVVK L+       
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELI 123
            + DK G+T LH+A +  + ++V  L+
Sbjct: 63  AK-DKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 68  NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 127
           NG+T LH AAR GHLEVVK L+        + DK G+T LH+A +  + ++V  L+    
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 128 SVLKLEDNKGNTALHIAIKKGRTQIVRCLL 157
            V   +D  G T LH+A + G  ++V+ LL
Sbjct: 60  DV-NAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
           G+T LH+A +  + ++V  L+     V   +D  G T LH+A + G  ++V+ LL   G 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGA 59
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           DVN+ +K G +PL +A + G+ E+  LL EAGA
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 29/182 (15%)
Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
           TALH A    ++D+V FL+E  +N+ +   N G   LH+AA  G+L++ + L+S+    G
Sbjct: 75  TALHQACIDDNVDMVKFLVENGANINQ-PDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133
Query: 97  FRTDKKGQTALHMAVKG------QNE----DIVLELIRPDPSVLKLEDNK---------- 136
              + +G T L +A +       QNE     + +E  R +   + L D +          
Sbjct: 134 A-VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192
Query: 137 ------GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 190
                 G TALH+A  KG T++++ L+     DVN  +  G +PL  A   G  E   +L
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRIL 251
Query: 191 KE 192
            E
Sbjct: 252 VE 253

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 10/154 (6%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDPSTGFRT 99
           AA  G  D V  L+   +N A +  ++  G T LH AA  GHLE+V+ L+ K+ +     
Sbjct: 21  AARAGQDDEVRILM---ANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL-KNGADVNAD 76
Query: 100 DKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
           D  G T LH+A  +G  E  V+E++  + + +   D+ G T LH+A   G  +IV  LL 
Sbjct: 77  DSLGVTPLHLAADRGHLE--VVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Query: 159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
             G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 135 -HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 77  ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV---LELIRPDPSVLKLE 133
           A  G L+ +K  +  D S   RTD+  +TALH A    + +IV   L+L  P    +  +
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----VNDK 69
Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
           D+ G + LHIA   G  +IV+ LL ++G  VN++N+ G +PL  A      E+  +L E 
Sbjct: 70  DDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 194 GA-AHSKDH 201
           GA   +KDH
Sbjct: 129 GANPDAKDH 137

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 68  NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP 127
           +G T LH+AA+ GH E VK L+SK      R+ K G T LH+A K  + +IV +L+    
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIV-KLLLAKG 65
Query: 128 SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNS 166
           + +      GNT  H+A K G  +IV+ LL  +G DVN+
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIVK-LLDAKGADVNA 103

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 101 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE 160
           K G T LH A K  + + V +L+     V       GNT LH+A K G  +IV+ LL+ +
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLA-K 64
Query: 161 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           G DVN+ +K G +P  +A+K G+ E+  LL   GA
Sbjct: 65  GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 76/145 (52%), Gaps = 4/145 (2%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 101
           AA  G  D V  L+   +++  +  N G T LH AA  GHLE+V+ L+ K  +     D 
Sbjct: 21  AARAGQDDEVRILIANGADVNAV-DNTGLTPLHLAAVSGHLEIVEVLL-KHGADVDAADV 78
Query: 102 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 161
            G T LH+A    + +IV  L++    V    D  G+T LH+A  +G  +IV  LL   G
Sbjct: 79  YGFTPLHLAAMTGHLEIVEVLLKYGADVNAF-DMTGSTPLHLAADEGHLEIVEVLLKY-G 136
Query: 162 IDVNSLNKAGESPLDVAEKLGNTEL 186
            DVN+ +K G++  D++   GN +L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDL 161

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 37/165 (22%)
Query: 28  VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
           V  TD S  T LH AA  GH+++V  LL+  +++  I    G T LH AA +GHLE+V+ 
Sbjct: 40  VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIX-GSTPLHLAALIGHLEIVEV 98
Query: 88  LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 147
           L+                       G + + V              D  G+T LH+A   
Sbjct: 99  LLKH---------------------GADVNAV--------------DTWGDTPLHLAAIM 123
Query: 148 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
           G  +IV  LL   G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 124 GHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 12/153 (7%)
Query: 69  GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
           GK +L  AAR G  + V+ L++        TD  G T LH+A    + +IV  L++    
Sbjct: 15  GKKLL-EAARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
           V  + D  G+T LH+A   G  +IV  LL   G DVN+++  G++PL +A  +G+ E+  
Sbjct: 73  VNAI-DIXGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMGHLEIVE 130
Query: 189 LLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 221
           +L +        HG   +A  +  +T  DI  D
Sbjct: 131 VLLK--------HGADVNAQDKFGKTAFDISID 155

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 76/167 (45%), Gaps = 41/167 (24%)
Query: 28  VMTTDLSCSTALHTAAAQGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVV 85
           V  TD S  T LH AA  GH+++V  LL+   D N   I    G T LH AA +GHLE+V
Sbjct: 40  VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM---GSTPLHLAALIGHLEIV 96
Query: 86  KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 145
           + L+                       G + + V              D  G+T LH+A 
Sbjct: 97  EVLLKH---------------------GADVNAV--------------DTWGDTPLHLAA 121
Query: 146 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
             G  +IV  LL   G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 122 IMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 12/153 (7%)
Query: 69  GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
           GK +L  AAR G  + V+ L++        TD  G T LH+A    + +IV  L++    
Sbjct: 15  GKKLL-EAARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
           V  + D  G+T LH+A   G  +IV  LL   G DVN+++  G++PL +A  +G+ E+  
Sbjct: 73  VNAI-DIMGSTPLHLAALIGHLEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMGHLEIVE 130
Query: 189 LLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 221
           +L +        HG   +A  +  +T  DI  D
Sbjct: 131 VLLK--------HGADVNAQDKFGKTAFDISID 155

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 101
           AAA G  D V  L+   +++     +NG T LH AA  G LE+V+ L+ K+ +    +D 
Sbjct: 13  AAAAGQDDEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNASDS 70
Query: 102 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 161
            G T LH+A    + +IV  L++    V    D  G T LH+A   G+ +IV  LL   G
Sbjct: 71  AGITPLHLAAYDGHLEIVEVLLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLK-HG 128
Query: 162 IDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
            DVN+ +  G +  D++   G  +L  +L+
Sbjct: 129 ADVNAQDALGLTAFDISINQGQEDLAEILQ 158

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 69  GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
           GK +L  AAR G  + V+ L++         D+KG T LH+A    + +IV  L++    
Sbjct: 15  GKKLL-EAARAGQDDEVRILMANGADVN-ANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
           V    DN G+T LH+A   G  +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 73  V-NAHDNDGSTPLHLAALFGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 189 LLKE 192
           +L++
Sbjct: 131 ILQK 134

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
           G+  L  A  GQ++++   ++  + + +   D KGNT LH+A      +IV  LL   G 
Sbjct: 15  GKKLLEAARAGQDDEV--RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK-HGA 71
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDI 218
           DVN+ +  G +PL +A   G+ E+  +L +        HG   +A  +  +T  DI
Sbjct: 72  DVNAHDNDGSTPLHLAALFGHLEIVEVLLK--------HGADVNAQDKFGKTAFDI 119

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)
Query: 17  LKELLGEFPNLVMTTDLSCSTALHTAAA-QGHIDVVNFLLEI--DSNLAKIARNNGKTVL 73
           ++ELL   P+L++  D      LH + + Q H ++ +FLL    + NL     ++G T  
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDDYPDDSGWTPF 76
Query: 74  HSAARMGHLEVVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 132
           H A  +G+LEVVK+L  +       +   +G T LH+AV  +  ++   LI    SV ++
Sbjct: 77  HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RI 135
Query: 133 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL--DVAEKLGNTELFSLL 190
           +D      LH A   G  +++  L  +    VN  +K G +PL   +AE  G+  +  L+
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL-LV 194
Query: 191 KEAGAAHS 198
           ++ GA + 
Sbjct: 195 EKYGAEYD 202

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)
Query: 17  LKELLGEFPNLVMTTDLSCSTALHTAAA-QGHIDVVNFLLEI--DSNLAKIARNNGKTVL 73
           ++ELL   P+L++  D      LH + + Q H ++ +FLL    + NL     ++G T  
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDDYPDDSGWTPF 76
Query: 74  HSAARMGHLEVVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 132
           H A  +G+LEVVK+L  +       +   +G T LH+AV  +  ++   LI    SV ++
Sbjct: 77  HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RI 135
Query: 133 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL--DVAEKLGNTELFSLL 190
           +D      LH A   G  +++  L  +    VN  +K G +PL   +AE  G+  +  L+
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL-LV 194
Query: 191 KEAGAAHS 198
           ++ GA + 
Sbjct: 195 EKYGAEYD 202

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 9/188 (4%)
Query: 17  LKELLGEFPNLVMTTDLSCSTALHTAAA-QGHIDVVNFLLEI--DSNLAKIARNNGKTVL 73
           ++ELL   P+L++  D      LH + + Q H ++ +FLL    + NL     ++G T  
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLDDYPDDSGWTPF 76
Query: 74  HSAARMGHLEVVKALVSKDPSTGF-RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 132
           H A  +G+LEVVK+L  +       +   +G T LH+AV  +  ++   LI    SV ++
Sbjct: 77  HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RI 135
Query: 133 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL--DVAEKLGNTELFSLL 190
           +D      LH A   G  +++  L  +    VN  +K G +PL   +AE  G+  +  L+
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL-LV 194
Query: 191 KEAGAAHS 198
           ++ GA + 
Sbjct: 195 EKYGAEYD 202

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 69  GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
           G T LH AA  GHLE+V+ L+ K+ +     D  G T L +A    + +IV E++  + +
Sbjct: 47  GWTPLHLAAFNGHLEIVEVLL-KNGADVNAVDHAGMTPLRLAALFGHLEIV-EVLLKNGA 104
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
            +   D +G+T LH+A   G  +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 105 DVNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 189 LLKE 192
           +L++
Sbjct: 164 ILQK 167

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 39  LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 98
           L +AAA+G ++ +  LL+  +         G+T L    ++G+ E+ + L+ +  +   +
Sbjct: 9   LASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 99  TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
            D+ G   +H A +    D +  L+     V  +EDN+GN  LH+A K+G  ++V  L+ 
Sbjct: 67  -DRTGNAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
               +V   N  G++  D+A   G  E+ SL++  GA 
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 39  LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 98
           L +AAA+G ++ +  LL+  +         G+T L    ++G+ E+ + L+ +  +   +
Sbjct: 9   LASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 99  TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
            D+ G   +H A +    D +  L+     V  +EDN+GN  LH+A K+G  ++V  L+ 
Sbjct: 67  -DRTGFAVIHDAARAGQLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
               +V   N  G++  D+A   G  E+ SL++  GA 
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 4/124 (3%)
Query: 69  GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
           GK +L  AAR G  + V+ L++         D+ G T LH+A +  + +IV  L++    
Sbjct: 15  GKKLL-EAARAGQDDEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
           V   EDN G T LH+A  +G  +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 73  V-NAEDNFGITPLHLAAIRGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 189 LLKE 192
           +L++
Sbjct: 131 ILQK 134

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 7/149 (4%)
Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV--SKDP 93
           S ++H  AAQG +D +   L    NL       G T L  A+  G +E V+ L+    DP
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 94  STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
                  K+ ++AL +A  G   DIV  L+  D  +  + D  G T L  A++    + V
Sbjct: 63  HI---LAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCV 118
Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLG 182
             LL+  G D+ +   +G +P+D+A  LG
Sbjct: 119 EALLA-RGADLTTEADSGYTPMDLAVALG 146

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 39  LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 98
           L +AAA+G ++ +  LL+  +         G+T L    ++G+ E+ + L+ +  +   +
Sbjct: 9   LASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 99  TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
            D+ G   +H A +    D +  L+     V  +EDN+GN  LH+A K+G  ++V  L+ 
Sbjct: 67  -DRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
               +V   N  G++  D+A   G  E+ SL++  GA 
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 39  LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 98
           L +AAA+G ++ +  LL+  +         G+T L    ++G+ E+ + L+ +  +   +
Sbjct: 9   LASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 99  TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
            D+ G   +H A +    D +  L+     V  +EDN+GN  LH+A K+G  ++V  L+ 
Sbjct: 67  -DRTGFAVIHDAARAGFLDTLQTLLENQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
               +V   N  G++  D+A   G  E+ SL++  GA 
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 39  LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 98
           L +AAA+G ++ +  LL+  +         G+T L    ++G+ E+ + L+ +  +   +
Sbjct: 9   LASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 99  TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
            D+ G   +H A +    D +  L+     V  +EDN+GN  LH+A K+G  ++V  L+ 
Sbjct: 67  -DRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
               +V   N  G++  D+A   G  E+ SL++  GA 
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 28  VMTTDLSCSTALHTAAAQGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVV 85
           V   D +  T LH AA +GH+++V  LL+   D N + I    G+T LH AA +GHLE+V
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW---GRTPLHLAATVGHLEIV 96
Query: 86  KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 118
           + L+        + DK G+TA  +++   NED+
Sbjct: 97  EVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDL 128

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 69  GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
           GK +L  A R G  + V+ L++         D  G T LH+A K  + +IV  L++    
Sbjct: 15  GKKLL-EATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
           V    D  G T LH+A   G  +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 73  V-NASDIWGRTPLHLAATVGHLEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 189 LLKE 192
           +L++
Sbjct: 131 ILQK 134

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 7/149 (4%)
Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV--SKDP 93
           S ++H  AAQG +D +   L    NL       G T L  A+  G +E V+ L+    DP
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 94  STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
                  K+ ++AL +A  G   DIV  L+  D  +  + D  G T L  A+     + V
Sbjct: 63  HI---LAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVHGNHVKCV 118
Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLG 182
             LL+  G D+ +   +G +P+D+A  LG
Sbjct: 119 EALLA-RGADLTTEADSGYTPMDLAVALG 146

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 28  VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
           V   D +  T LH AA +GH+++V  LL+  +++   + + G+T LH AA +GHLE+V+ 
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEV 98
Query: 88  LVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 118
           L+        + DK G+TA  +++   NED+
Sbjct: 99  LLEYGADVNAQ-DKFGKTAFDISIDNGNEDL 128

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 69  GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
           GK +L  A R G  + V+ L++         D  G T LH+A K  + +IV  L++    
Sbjct: 15  GKKLL-EATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
           V    D+ G T LH+A   G  +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 73  V-NASDSWGRTPLHLAATVGHLEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 189 LLKE 192
           +L++
Sbjct: 131 ILQK 134

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 28  VMTTDLSCSTALHTAAAQGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVV 85
           V   D +  T LH AA +GH+++V  LL+   D N   I    G+T LH AA +GHLE+V
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW---GRTPLHLAATVGHLEIV 96
Query: 86  KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 118
           + L+        + DK G+TA  +++   NED+
Sbjct: 97  EVLLEYGADVNAQ-DKFGKTAFDISIDNGNEDL 128

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 69  GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
           GK +L  A R G  + V+ L++         D  G T LH+A K  + +IV  L++    
Sbjct: 15  GKKLL-EATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
           V    D  G T LH+A   G  +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 73  V-NARDIWGRTPLHLAATVGHLEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 189 LLKE 192
           +L++
Sbjct: 131 ILQK 134

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 9/171 (5%)
Query: 32  DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAK---IARNNGKTVLHSAARMGHLEVVKAL 88
           D    T LH A  QG++  V+ L+ +     +   I  N  +T LH A       VV+ L
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 89  VSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELI-RPDPSVLKLE--DNKGNTALHIAI 145
           V+   S     D+ GQTA H+A + ++   +  L+    P  L LE  +  G TALH+A+
Sbjct: 66  VTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 146 KKGRTQIVRCLLSIEGIDVNSLN-KAGESPLDVAEKLGNTELFSLLKEAGA 195
                + V+ LL   G D+++++ K+G SPL  A +  +  +  LL + GA
Sbjct: 125 NTECQETVQLLLE-RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 28  VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
           V   D    T LH AA  GH+++V  LL+  +++     N G+T LH AA   HLE+V+ 
Sbjct: 40  VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG-NTGRTPLHLAAWADHLEIVEV 98
Query: 88  LVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 118
           L+        + DK G+TA  +++   NED+
Sbjct: 99  LLKHGADVNAQ-DKFGKTAFDISIDNGNEDL 128

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 69  GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
           GK +L  AAR G  + V+ L +         D  G T LH+A    + +IV E++  + +
Sbjct: 15  GKKLL-EAARAGQDDEVRILTANGADVN-ANDYWGHTPLHLAAMLGHLEIV-EVLLKNGA 71
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
            +    N G T LH+A      +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 72  DVNATGNTGRTPLHLAAWADHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 189 LLKE 192
           +L++
Sbjct: 131 ILQK 134

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 32  DLSCSTALHTAAAQGHIDVVNFLLEIDS-----NLAKIARNNGKTVLHSAARMGHLEVVK 86
           D   +T LH A  QG +  V  L +  +     ++ K    NG T LH A+  G+L +V+
Sbjct: 72  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 131
Query: 87  ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
            LVS       +    G+TALH+AV  QN D+V  L++
Sbjct: 132 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 12/181 (6%)
Query: 28  VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL---------AKIARNNGKTVLHSAAR 78
           V   D    TA   AA  G +  + FL +  +N+          +  R  G T L  AA 
Sbjct: 98  VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157
Query: 79  MGHLEVVKALVSKDPSTGFRTDKKGQTAL-HMAVKGQNEDI--VLELIRPDPSVLKLEDN 135
            GH+EV+K L+ +  +     D  G+ AL H  +   + D+  +  L+    + + +   
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217
Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           +G T L +A++K    +V+ LL  E I++N  +  G++ L +A +L   ++  LL + GA
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277
Query: 196 A 196
           +
Sbjct: 278 S 278

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 12/181 (6%)
Query: 28  VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL---------AKIARNNGKTVLHSAAR 78
           V   D    TA   AA  G +  + FL +  +N+          +  R  G T L  AA 
Sbjct: 118 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 177
Query: 79  MGHLEVVKALVSKDPSTGFRTDKKGQTAL-HMAVKGQNEDI--VLELIRPDPSVLKLEDN 135
            GH+EV+K L+ +  +     D  G+ AL H  +   + D+  +  L+    + + +   
Sbjct: 178 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 237
Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           +G T L +A++K    +V+ LL  E I++N  +  G++ L +A +L   ++  LL + GA
Sbjct: 238 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 297
Query: 196 A 196
           +
Sbjct: 298 S 298

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 6/141 (4%)
Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
           T L  A   G  D VN LL+  +++     ++  + +H AAR GH+E V +L++   +  
Sbjct: 71  TPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYGGNID 128
Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
            +    G T L++A + Q    V +L+    S   +   KG  +   A+ +  ++ + CL
Sbjct: 129 HKISHLG-TPLYLACENQQRACVKKLLE---SGADVNQGKGQDSPLHAVARTASEELACL 184
Query: 157 LSIEGIDVNSLNKAGESPLDV 177
           L   G D  + N  G+ P+++
Sbjct: 185 LMDFGADTQAKNAEGKRPVEL 205

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 32  DLSCSTALHTAAAQGHIDVVNFLLEIDS-----NLAKIARNNGKTVLHSAARMGHLEVVK 86
           D   +T LH A  QG +  V  L +  +     ++ K    NG T LH A+  G+L +V+
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134
Query: 87  ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
            LVS       +    G+TALH+AV  QN D+V  L++
Sbjct: 135 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 69  GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
           GK +L  AAR G  + V+ L++         DK G T LH+A    + +IV  L++    
Sbjct: 15  GKKLL-EAARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
           V  + D  G T LH+    G  +IV  LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 73  VNAI-DAIGETPLHLVAMYGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 189 LLKE 192
           +L++
Sbjct: 131 ILQK 134

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
           G+  L  A  GQ++++   ++  + + +  ED  G T LH+A      +IV  LL   G 
Sbjct: 15  GKKLLEAARAGQDDEV--RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLK-NGA 71
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 221
           DVN+++  GE+PL +    G+ E+  +L +        HG   +A  +  +T  DI  D
Sbjct: 72  DVNAIDAIGETPLHLVAMYGHLEIVEVLLK--------HGADVNAQDKFGKTAFDISID 122

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 73  LHSAARMGHLEVVKALVSKDPSTGFRT-DKKGQTALHMAVKGQNEDIVLELIRPDPSVLK 131
           LH AA+ G+L  ++  +  D   G    DK G TAL+ A  G ++DIV E +   P++  
Sbjct: 77  LHEAAKRGNLSWLRECL--DNRVGVNGLDKAGSTALYWACHGGHKDIV-EXLFTQPNIEL 133
Query: 132 LEDNK-GNTALHIAIKKGRTQIVRCLLS 158
            + NK G+TALH A  KG   IV+ LL+
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLA 161

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 126 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 185
           DPS   L +++G TALH A+  G T+IV+ L+   G++VN+ +  G +PL  A    N +
Sbjct: 62  DPS---LPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQ 117
Query: 186 LFSLLKEAGAA 196
           +   L E+GAA
Sbjct: 118 VCKFLVESGAA 128

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 126 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 185
           DPS   L +++G TALH A+  G T+IV+ L+   G++VN+ +  G +PL  A    N +
Sbjct: 62  DPS---LPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQ 117
Query: 186 LFSLLKEAGAA 196
           +   L E+GAA
Sbjct: 118 VCKFLVESGAA 128

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
           TAL T   Q  I+ V  L  +  N+   A   G+T L  A   G ++VVKAL++ +    
Sbjct: 152 TALATLKTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN 210
Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
            + D  G TAL  A +  +++I   L+      + L D  G+TAL +A+  G+++I   L
Sbjct: 211 VQ-DDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Query: 157 LS 158
            S
Sbjct: 270 YS 271

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 8/142 (5%)
Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
           T L  A   G  D VN LL+  +++     ++  + +H AAR GH+E V +L++   +  
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYGGNID 184
Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKG-NTALHIAIKKGRTQIVRC 155
            +    G T L++A + Q    V +L+    S   +   KG ++ LH  ++    ++  C
Sbjct: 185 HKISHLG-TPLYLACENQQRACVKKLLE---SGADVNQGKGQDSPLHAVVRTASEELA-C 239
Query: 156 LLSIEGIDVNSLNKAGESPLDV 177
           LL   G D  + N  G+ P+++
Sbjct: 240 LLMDFGADTQAKNAEGKRPVEL 261

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 101
           AA  G ++ V  L  + S   +       T LH AA    + VV+ L+        + DK
Sbjct: 15  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DK 73
Query: 102 KGQTALHMAVK-GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE 160
            G   LH A   G  E  V EL+    +V+ + D    T LH A  KG+ +I + LL   
Sbjct: 74  GGLVPLHNACSYGHYE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-H 130
Query: 161 GIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
           G D    N+ G +PLD+  K G+T++  LL+
Sbjct: 131 GADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 160

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 42  AAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK 101
           AA  G ++ V  L  + S   +       T LH AA    + VV+ L+        + DK
Sbjct: 17  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DK 75
Query: 102 KGQTALHMAVK-GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE 160
            G   LH A   G  E  V EL+    +V+ + D    T LH A  KG+ +I + LL   
Sbjct: 76  GGLVPLHNACSYGHYE--VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ-H 132
Query: 161 GIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
           G D    N+ G +PLD+  K G+T++  LL+
Sbjct: 133 GADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 162

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 69  GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
           G + LH AA+ GH    + L+    S   RT K  +T LHMA    + +IV  L++    
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDART-KVDRTPLHMAASEGHANIVEVLLKHGAD 92
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
           V   +D    TALH A +    ++V  L+   G DV++ +K  ++  D++   GN +L  
Sbjct: 93  V-NAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGNEDLAE 150
Query: 189 LLK 191
           +L+
Sbjct: 151 ILQ 153

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
           G+  L  A  GQ++++   ++  + + +  +D  G T LH+A ++G  +IV  LL   G 
Sbjct: 3   GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GA 59
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
           DVN+ +K G++  D++   GN +L  +L++A
Sbjct: 60  DVNAQDKFGKTAFDISIDNGNEDLAEILQKA 90

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 40/157 (25%)
Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTV-LHSAARMGHLEVVKALVSKDPS 94
           ST LH AA    + VV +LL+  +++   A++ G  V LH+A   GH EV + LV     
Sbjct: 47  STPLHFAAGYNRVSVVEYLLQHGADVH--AKDKGGLVPLHNACSYGHYEVAELLV----- 99
Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
                 K G                        +V+ + D    T LH A  KG+ +I +
Sbjct: 100 ------KHG------------------------AVVNVADLWKFTPLHEAAAKGKYEICK 129
Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
            LL   G D    N+ G +PLD+  K G+T++  LL+
Sbjct: 130 LLLQ-HGADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 164

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 29  MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIA--RNNGKTVLHSAARMGHLEVVK 86
           M +DL     L  AA  G  D V  L+   +N A +A    NG T LH AAR GHLEVVK
Sbjct: 2   MGSDLG--KKLLEAARAGQDDEVRILM---ANGADVAAKDKNGSTPLHLAARNGHLEVVK 56
Query: 87  ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 119
            L+        + DK G+TA  +++   NED+ 
Sbjct: 57  LLLEAGADVNAQ-DKFGKTAFDISIDNGNEDLA 88

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
           G+  L  A  GQ++++   ++  + + +  +D  G+T LH+A + G  ++V+ LL   G 
Sbjct: 7   GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GA 63
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLK 191
           DVN+ +K G++  D++   GN +L  +L+
Sbjct: 64  DVNAQDKFGKTAFDISIDNGNEDLAEILQ 92

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 29  MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIA--RNNGKTVLHSAARMGHLEVVK 86
           M +DL     L  AA  G  D V  L+   +N A +A    NG T LH AAR GHLEVVK
Sbjct: 20  MGSDLG--KKLLEAARAGQDDEVRILM---ANGADVAAKDKNGSTPLHLAARNGHLEVVK 74
Query: 87  ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV 119
            L+        + DK G+TA  +++   NED+ 
Sbjct: 75  LLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLA 106

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
           G+  L  A  GQ++++   ++  + + +  +D  G+T LH+A + G  ++V+ LL   G 
Sbjct: 25  GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GA 81
Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLLK 191
           DV + +K G++  D++   GN +L  +L+
Sbjct: 82  DVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 84  VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 143
           V+   + +  S   +TD+ G+TALH+A +    D    L+        ++DN G T LH 
Sbjct: 3   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-XIQDNMGRTPLHA 61
Query: 144 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 182
           A+      + + LL     D+++    G +PL +A +L 
Sbjct: 62  AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLA 100

>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major Length = 364

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 32/192 (16%)
Query: 23  EFPNL-VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNN-GKTVLHSAARMG 80
           +FP L  + +D      +H AA +G  D V  L+E  + ++   +N  G T LH A + G
Sbjct: 7   DFPKLNRIKSDDENXEKIHVAARKGQTDEVRRLIE--TGVSPTIQNRFGCTALHLACKFG 64
Query: 81  HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--------PDPSVLKL 132
            ++  K L S        +   GQ  +H+AV     D+V+ L+         P+ S+L  
Sbjct: 65  CVDTAKYLAS---VGEVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPE-SLLNE 120
Query: 133 EDN-------------KGNTALHIAIKKGRT--QIVRCLLSIEGIDVNSLNKAGESPLDV 177
            D              KG TALH  +  G    + ++ L+ + G    + +KA E+PL  
Sbjct: 121 CDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQL-GASPTAKDKADETPLXR 179
Query: 178 AEKLGNTELFSL 189
           A +  N E   L
Sbjct: 180 AXEFRNREALDL 191

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 84  VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 143
           V+   + +  S   +TD+ G+TALH+A +    D    L+        ++DN G T LH 
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 64
Query: 144 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 182
           A+      + + L+     D+++    G +PL +A +L 
Sbjct: 65  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 103

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 51/209 (24%)
Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDP 93
            TALH A    H   ++FLL   +    +   N  G+T LH AA +G    V+ L +   
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 94  STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS------------------------- 128
                 ++ G TALH+A + +       L++P PS                         
Sbjct: 70  GV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 129 ---------------------VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 167
                                 L+ E+  G+T LH+A+     ++VR LL   G D+N  
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLNKP 187
Query: 168 NK-AGESPLDVAEKLGNTELFSLLKEAGA 195
               G +PL +A +     +  LL +AGA
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGA 216

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 51/209 (24%)
Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKIARNN--GKTVLHSAARMGHLEVVKALVSKDP 93
            TALH A    H   ++FLL   +    +   N  G+T LH AA +G    V+ L +   
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 94  STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS------------------------- 128
                 ++ G TALH+A + +       L++P PS                         
Sbjct: 70  GV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 129 ---------------------VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL 167
                                 L+ E+  G+T LH+A+     ++VR LL   G D+N  
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR-LLRDAGADLNKP 187
Query: 168 NK-AGESPLDVAEKLGNTELFSLLKEAGA 195
               G +PL +A +     +  LL +AGA
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGA 216

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 99  TDKKGQTALHMA-VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 157
           T+ +G+T LH+A +KG    +  E +  + S   ++D+ G T LH A   G  ++V  LL
Sbjct: 6   TNHRGETLLHIASIKGDIPSV--EYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63
Query: 158 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS 198
             + + VN+     +SPL  A K G+ ++  LL   GA+ +
Sbjct: 64  QHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 84  VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 143
           V+   + +  S   +TD+ G+TALH+A +    D    L+        ++DN G T LH 
Sbjct: 38  VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 96
Query: 144 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
           A+      + + L+     D+++    G +PL +A +L
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 134

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
           D +G TAL  AVK     I  +L+    +V   +D  G T L  +I  G +++   LL  
Sbjct: 65  DIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGYSEMSYFLLE- 122
Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            G +VN  N  GE+PL VA K G +E+   L E GA
Sbjct: 123 HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA 158

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 84  VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 143
           V+   + +  S   +TD+ G+TALH+A +    D    L+        ++DN G T LH 
Sbjct: 39  VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHA 97
Query: 144 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
           A+      + + L+     D+++    G +PL +A +L
Sbjct: 98  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 135

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 26/181 (14%)
Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNN----GKTVLHSAARMGHLEVVKALVSKD 92
           TALH AA   +++    L+E    L      +    G+T LH A    ++ +V+AL+++ 
Sbjct: 39  TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG 98
Query: 93  PSTGFRTDKK------------GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA 140
            S   R                G+  L  A    +E+IV  LI     + + +D+ GNT 
Sbjct: 99  ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTV 157
Query: 141 LHIAI----KKGRTQIVRCLLSIEGID-VNSL----NKAGESPLDVAEKLGNTELFSLLK 191
           LHI I    K    Q+   LLS +G D + SL    N  G +P  +A   GN  +F  L 
Sbjct: 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217
Query: 192 E 192
           +
Sbjct: 218 Q 218

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 73  LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 132
           L  AA  G ++ V+ L+ ++       ++ G+TAL + + G +  + LEL++   S   +
Sbjct: 12  LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-SPAVALELLKQGASP-NV 69
Query: 133 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
           +D  G + +H A + G    ++ L+   G DVN+L+  G  P+ +A + G++ + S L  
Sbjct: 70  QDASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 128
Query: 193 AGAAHSKD 200
               H +D
Sbjct: 129 ESDLHHRD 136

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 87  ALVSKDPST-GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 145
           AL   DPS     T +  +  L  A +  NE+ ++ L+ P        D + +T LH+A 
Sbjct: 7   ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA 66
Query: 146 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
              R +IV+ LL   G DV++ +K G  PL  A   G+ E+  LL + GA
Sbjct: 67  GYNRVRIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 73  LHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL 132
           L  AA  G ++ V+ L+ ++       ++ G+TAL + + G +  + LEL++   S   +
Sbjct: 14  LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-SPAVALELLKQGASP-NV 71
Query: 133 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
           +D  G + +H A + G    ++ L+   G DVN+L+  G  P+ +A + G++ + S L  
Sbjct: 72  QDASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 130
Query: 193 AGAAHSKD 200
               H +D
Sbjct: 131 ESDLHHRD 138

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 69  GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
           GK +L  AAR G  + V+ L++       + D+ G T L++A    + +IV  L++    
Sbjct: 15  GKKLL-EAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
           V  + D  G T LH+A   G  +I   LL   G DVN+ +K G++  D++   GN +L  
Sbjct: 73  VNAV-DAIGFTPLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGNEDLAE 130
Query: 189 LLKE 192
           +L++
Sbjct: 131 ILQK 134

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 62  AKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIV 119
           A+ AR N   +L  AA  G LEVV+  V +  DPS   + +++G TALH A+ G N  IV
Sbjct: 14  ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS---QPNEEGITALHNAICGANYSIV 70
Query: 120 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 157
             LI    +V    D+ G T LH A     T I   L+
Sbjct: 71  DFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALV 107

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 3/175 (1%)
Query: 16  VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 75
           V+ + + +  +L   TD + +TALH AAA    D    LLE  ++ A I  N G+T LH+
Sbjct: 38  VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASAD-ANIQDNMGRTPLHA 96
Query: 76  AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 135
           A       V + L+    +        G T L +A +   E ++ +LI     V  ++D 
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD- 155
Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 190
            G +ALH A           LL   G + +  N   E+PL +A + G+ E   +L
Sbjct: 156 LGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVL 209

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 11/150 (7%)
Query: 14  ILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE-IDSNLAKIARNNGKTV 72
           I + K L+    ++ +   +S S  L+ A AQG  +++ ++L+    +L K  R  G  +
Sbjct: 52  IEIAKALIDRGADINLQNSISDSPYLY-AGAQGRTEILAYMLKHATPDLNKHNRYGGNAL 110
Query: 73  LHSAARMGHLEVVKALVSKD-PSTGFRTDKKGQTALHMAV---KGQN--EDIVLELIRPD 126
           +  AA  GH++ VK L+        F+ D  G TAL  AV   +G    +DIV +L+  +
Sbjct: 111 I-PAAEKGHIDNVKLLLEDGREDIDFQNDF-GYTALIEAVGLREGNQLYQDIV-KLLMEN 167
Query: 127 PSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
            +   ++DN G TA+  A +KG T+I + L
Sbjct: 168 GADQSIKDNSGRTAMDYANQKGYTEISKIL 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	437
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-40
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-36
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-27
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-39
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-26
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-39
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-34
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-33
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-26
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-38
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-30
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-25
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-22
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-37
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-34
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-34
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-34
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-27
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-37
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-33
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-23
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-37
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-35
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-35
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-23
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-37
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-35
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-34
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-28
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-26
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-32
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-31
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-36
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-33
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-32
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-36
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-33
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-32
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-32
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-24
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-36
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-23
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-36
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-31
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-27
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-26
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-25
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-35
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-30
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-25
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-35
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-24
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-35
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-32
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-26
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-33
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-32
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-28
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-34
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-28
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-34
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-22
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-33
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-24
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-33
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-26
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-33
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-27
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-33
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-27
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-27
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-25
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-32
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-32
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-25
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-32
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-28
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-23
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-32
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-32
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-30
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-06
2rfa_A	232	Transient receptor potential cation channel subfa	2e-32
2rfa_A	232	Transient receptor potential cation channel subfa	7e-30
2rfa_A	232	Transient receptor potential cation channel subfa	9e-27
2rfa_A	232	Transient receptor potential cation channel subfa	1e-19
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-32
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-19
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-32
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-31
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-29
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-25
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-21
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-31
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-30
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-27
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-26
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-18
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-31
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-27
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-26
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-21
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-29
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-21
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-29
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-27
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-28
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-27
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-28
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-27
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-27
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-26
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-27
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-26
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-12
2etb_A	256	Transient receptor potential cation channel subfam	5e-26
2etb_A	256	Transient receptor potential cation channel subfam	1e-21
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-26
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-26
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-25
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-23
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-25
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-22
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-15
2pnn_A	273	Transient receptor potential cation channel subfa	6e-24
2pnn_A	273	Transient receptor potential cation channel subfa	2e-23
2pnn_A	273	Transient receptor potential cation channel subfa	4e-15
2pnn_A	273	Transient receptor potential cation channel subfa	7e-13
2pnn_A	273	Transient receptor potential cation channel subfa	4e-08
2pnn_A	273	Transient receptor potential cation channel subfa	7e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-21
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-20
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-21
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-21
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-17
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-15
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-12
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  140 bits (356), Expect = 3e-40
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 7/162 (4%)

Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DP 93
           S ++H  AAQG +D +   L    NL       G T L  A+  G +E V+ L+    DP
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62

Query: 94  STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
                  K+ ++AL +A  G   DIV  L+  D  +  + D  G T L  A++    + V
Sbjct: 63  HIL---AKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCV 118

Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
             LL+  G D+ +   +G +P+D+A  LG  ++  +++    
Sbjct: 119 EALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  129 bits (328), Expect = 4e-36
 Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 4/159 (2%)

Query: 16  VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 75
            LKE L +  NLV   D    T L  A+A G I+ V FLLE  ++   I     ++ L  
Sbjct: 17  QLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSL 75

Query: 76  AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 135
           A+  G+ ++V  L+ +D       D  G T L  AV+G +   V  L+     +   E +
Sbjct: 76  ASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEAD 133

Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 174
            G T + +A+  G  ++ + + +   + +   N     P
Sbjct: 134 SGYTPMDLAVALGYRKVQQVIEN-HILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  104 bits (263), Expect = 6e-27
 Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 69  GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
               +H  A  G L+ +K  + K  +   + D++G T L  A      + V  L+     
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
              +   +  +AL +A   G T IV  LL    +D+N  +  G +PL  A +  + +   
Sbjct: 62  P-HILAKERESALSLASTGGYTDIVGLLLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVE 119

Query: 189 LLKEAGA 195
            L   GA
Sbjct: 120 ALLARGA 126

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  139 bits (352), Expect = 1e-39
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 11/170 (6%)

Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DP 93
           S ++H  AAQG +  +   +E ++ +       G T L  AA  G + VV+ L+    DP
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 94  STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
                  K  ++AL +A      DIV  L+     V    D  G T L  A+     + V
Sbjct: 63  QL---LGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCV 118

Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA---AHSKD 200
           + LL   G D      +G + +D+A  LG   +  +++        + K+
Sbjct: 119 KMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  104 bits (261), Expect = 1e-26
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 11/132 (8%)

Query: 68  NGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR- 124
                +H  A  G +  +   + +    +    TD++G T L  A       +V  L++ 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINH---TDEEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 125 -PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN 183
             DP +         +AL +A  KG T IV+ LL   G+DVN  +  G +PL  A    +
Sbjct: 59  GADPQL---LGKGRESALSLACSKGYTDIVKMLLD-CGVDVNEYDWNGGTPLLYAVHGNH 114

Query: 184 TELFSLLKEAGA 195
            +   +L E+GA
Sbjct: 115 VKCVKMLLESGA 126

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  141 bits (357), Expect = 2e-39
 Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 8/168 (4%)

Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DP 93
           ST LH A  QGH+ +V  L++  ++   +    G + +H AA+ GH  +V  L++K  D 
Sbjct: 77  STPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135

Query: 94  STGFRTDKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 152
                 D+ G T L  A  +  + D    L+  + SV   +    NTALH A+  G T +
Sbjct: 136 DM---MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTV 192

Query: 153 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 200
           +  LL   G +V++ N  GES LD+A++  N  + + L+EA  A   D
Sbjct: 193 ISLLLEA-GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  126 bits (320), Expect = 4e-34
 Identities = 53/163 (32%), Positives = 76/163 (46%), Gaps = 9/163 (5%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
           T LH AA    ID+V + +   + + ++  +   T LH A R GHL +V  L+    DPS
Sbjct: 44  TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG-RTQIV 153
                D +G + +H+A +  +  IV  LI     V  + D  G T L  A  +       
Sbjct: 104 ---LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPT 159

Query: 154 RCLLSIEGIDVNSLNKA-GESPLDVAEKLGNTELFSLLKEAGA 195
           R LL+   + VN  +K    + L  A   GNT + SLL EAGA
Sbjct: 160 RLLLT-FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA 201

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  125 bits (316), Expect = 1e-33
 Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 7/173 (4%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
             +  A   G  +    L+E   ++ +       T+LH AA    +++VK  +SK     
Sbjct: 11  WDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD 69

Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
                   T LH A +  +  +V++L++       L D +G + +H+A + G T IV  L
Sbjct: 70  QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYL 128

Query: 157 LSIEGIDVNSLNKAGESPLDVAEKLGNT-ELFSLLKEAGA---AHSKDHGKPP 205
           ++ +G DV+ +++ G +PL  A    ++ +   LL           K H    
Sbjct: 129 IA-KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTA 180

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  105 bits (265), Expect = 2e-26
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
           +     +  A + G  E  + LV    D       DK+  T LH A      D+V   I 
Sbjct: 7   DYSTWDIVKATQYGIYERCRELVEAGYDVRQ---PDKENVTLLHWAAINNRIDLVKYYIS 63

Query: 125 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 184
               V +L  +  +T LH A ++G   +V  L+   G D + ++  G S + +A + G+T
Sbjct: 64  KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY-GADPSLIDGEGCSCIHLAAQFGHT 122

Query: 185 ELFSLLKEAGA 195
            + + L   G 
Sbjct: 123 SIVAYLIAKGQ 133

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 70.9 bits (175), Expect = 3e-14
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 3/98 (3%)

Query: 99  TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
            D      +  A +    +   EL+     V +  D +  T LH A    R  +V+  +S
Sbjct: 5   IDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYIS 63

Query: 159 IEGIDVNSL-NKAGESPLDVAEKLGNTELFSLLKEAGA 195
            +G  V+ L      +PL  A + G+  +   L + GA
Sbjct: 64  -KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGA 100

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 58.6 bits (143), Expect = 5e-10
 Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 4/75 (5%)

Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
           D+     +  A + G  +  R L+   G DV   +K   + L  A      +L       
Sbjct: 6   DDYSTWDIVKATQYGIYERCRELVE-AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISK 64

Query: 194 GA---AHSKDHGKPP 205
           GA       D    P
Sbjct: 65  GAIVDQLGGDLNSTP 79

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  136 bits (346), Expect = 1e-38
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 11/163 (6%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
             + T   +G+   V   L+   N      ++G + LH A R G   VV+ L+ +    +
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQI 152
                ++   T LH+A    + DIV +L++   D +     +  GN  LH A   G+ Q+
Sbjct: 67  ---VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA---VNEHGNVPLHYACFWGQDQV 120

Query: 153 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
              L++  G  V+  NK GE P+D A+      L    ++ G 
Sbjct: 121 AEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  114 bits (287), Expect = 3e-30
 Identities = 36/173 (20%), Positives = 60/173 (34%), Gaps = 18/173 (10%)

Query: 16  VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVL 73
            ++  L    N +   D    + LH A  +G   VV  L+      A+I        T L
Sbjct: 20  AVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI---MRGARINVMNRGDDTPL 76

Query: 74  HSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLK 131
           H AA  GH ++V+ L+    D +     ++ G   LH A     + +  +L+     V  
Sbjct: 77  HLAASHGHRDIVQKLLQYKADINA---VNEHGNVPLHYACFWGQDQVAEDLVANGALV-S 132

Query: 132 LEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 184
           + +  G   +  A    R  +        G ++N        P       G T
Sbjct: 133 ICNKYGEMPVDKAKAPLRELLRERAEK-MGQNLN------RIPYKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 99.8 bits (250), Expect = 5e-25
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 2/129 (1%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD 126
                 + +  R G+   V+  +    +   + D  G + LH A +     +V  LI   
Sbjct: 3   PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62

Query: 127 PSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL 186
             +  + +   +T LH+A   G   IV+ LL     D+N++N+ G  PL  A   G  ++
Sbjct: 63  ARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQV 120

Query: 187 FSLLKEAGA 195
              L   GA
Sbjct: 121 AEDLVANGA 129

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 91.3 bits (228), Expect = 8e-22
 Identities = 33/119 (27%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKI-ARNN-GKTVLHSAARMGHLEVVKALVSK--D 92
           T LH AA+ GH D+V  LL      A I A N  G   LH A   G  +V + LV+    
Sbjct: 74  TPLHLAASHGHRDIVQKLL---QYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 130

Query: 93  PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 151
            S     +K G+  +  A     E +            K+  N           KG T+
Sbjct: 131 VSI---CNKYGEMPVDKAKAPLRELLRERAE-------KMGQNLNRIPYKDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 75.2 bits (186), Expect = 4e-16
 Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
             +    +    +  N   V   +    + L   D+ G + LH A ++GR+ +V  L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM- 60

Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            G  +N +N+  ++PL +A   G+ ++   L +  A
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  135 bits (343), Expect = 1e-37
 Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 8/169 (4%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
           T LH A +     V   L+   +       ++G T L  AAR+    +++ L++   D +
Sbjct: 60  TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
                D  G++ALH A    N D  + L++   +   +++N+  T L +A ++G  +  +
Sbjct: 120 A---VDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAK 175

Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD-HG 202
            LL     + +  +     P D+A++  + ++  LL E     S   HG
Sbjct: 176 VLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQLHG 223

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  125 bits (317), Expect = 6e-34
 Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 3/170 (1%)

Query: 26  NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 85
           +L   TD +  TALH AA     D    LLE  ++   I  N G+T LH+A       V 
Sbjct: 16  SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVF 74

Query: 86  KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 145
           + L+    +        G T L +A +   E ++ +LI     V    D+ G +ALH A 
Sbjct: 75  QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAA 133

Query: 146 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
                     LL   G + +  N   E+PL +A + G+ E   +L +  A
Sbjct: 134 AVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 182

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  114 bits (288), Expect = 1e-29
 Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 6/152 (3%)

Query: 46  GHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKG 103
               V++  +   ++L       G+T LH AAR    +  K L+    D +     D  G
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI---QDNMG 58

Query: 104 QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID 163
           +T LH AV    + +   LIR   + L    + G T L +A +     ++  L++    D
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHAD 117

Query: 164 VNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           VN+++  G+S L  A  + N +   +L + GA
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 149

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  140 bits (356), Expect = 2e-37
 Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 8/167 (4%)

Query: 31  TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVS 90
              +  T LH AA +GH++ V  LLE +++        G T LH AA+ G + V + L+ 
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLE 167

Query: 91  K--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 148
           +   P+      K G T LH+AV   N DIV  L+    S        G T LHIA K+ 
Sbjct: 168 RDAHPN---AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQN 223

Query: 149 RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           + ++ R LL   G   N+ +  G +PL +A + G+ E+ +LL    A
Sbjct: 224 QVEVARSLLQ-YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQA 269

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  139 bits (354), Expect = 3e-37
 Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 14/194 (7%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
           T LH AA +GH ++V  LL   +N   +   +G T LH  A+ GH+ V   L+       
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
               T + G T LH+A    N  +V  L++    V   +   G + LH A ++G T IV 
Sbjct: 306 A---TTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVT 361

Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA------AHSKDHGKPPSAT 208
            LL   G   N ++  G +PL +A++LG   +  +LK             K     P   
Sbjct: 362 LLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420

Query: 209 KQLKQTVSDIKHDV 222
            ++     D   ++
Sbjct: 421 DEILDVSEDEGEEL 434

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  134 bits (340), Expect = 3e-35
 Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 8/161 (4%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
           T LH AA  GH +V  +LL+  + +      + +T LH AAR+GH  +VK L+    +P+
Sbjct: 49  TPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 107

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
                   G T LH+A +  + + VL L+  + S       KG T LH+A K G+ ++  
Sbjct: 108 L---ATTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAE 163

Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            LL       N+  K G +PL VA    N ++  LL   G 
Sbjct: 164 LLLE-RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 203

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  134 bits (339), Expect = 4e-35
 Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 8/161 (4%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
           T LH AA Q  ++V   LL+   +        G T LH AA+ GH E+V  L+SK  + +
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN 272

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
            G   +K G T LH+  +  +  +   LI+    V       G T LH+A   G  ++V+
Sbjct: 273 LG---NKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVK 328

Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            LL     DVN+  K G SPL  A + G+T++ +LL + GA
Sbjct: 329 FLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA 368

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  132 bits (334), Expect = 2e-34
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 8/161 (4%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
           T LH A    ++D+V  LL    +       NG T LH AA+   +EV ++L+      +
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
                  +G T LH+A +  + ++V  L+    +   L +  G T LH+  ++G   +  
Sbjct: 240 A---ESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVAD 295

Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            L+   G+ V++  + G +PL VA   GN +L   L +  A
Sbjct: 296 VLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 335

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  131 bits (333), Expect = 2e-34
 Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 8/161 (4%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
           T LH A+  GH+ +V  LL+  ++   ++    +T LH AAR GH EV K L+      +
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
                 K  QT LH A +  + ++V  L+  + +   L    G+T LHIA ++G  + V 
Sbjct: 75  A---KAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVL 130

Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            LL  +      + K G +PL VA K G   +  LL E  A
Sbjct: 131 ALLE-KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 170

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  111 bits (279), Expect = 5e-27
 Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 7/131 (5%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
            +G T LH A+ MGHL +VK L+ +   P+    ++ K +T LHMA +  + ++   L++
Sbjct: 12  ESGLTPLHVASFMGHLPIVKNLLQRGASPNV---SNVKVETPLHMAARAGHTEVAKYLLQ 68

Query: 125 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 184
               V   +     T LH A + G T +V+ LL     + N    AG +PL +A + G+ 
Sbjct: 69  NKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLE-NNANPNLATTAGHTPLHIAAREGHV 126

Query: 185 ELFSLLKEAGA 195
           E    L E  A
Sbjct: 127 ETVLALLEKEA 137

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 81.0 bits (201), Expect = 9e-17
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 99  TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
             + G T LH+A    +  IV  L++   S   + + K  T LH+A + G T++ + LL 
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQ 68

Query: 159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
                VN+  K  ++PL  A ++G+T +  LL E  A
Sbjct: 69  -NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 104

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  134 bits (339), Expect = 5e-37
 Identities = 46/166 (27%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 37  TALHTAAAQGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPS 94
           T LH A      ++   LL    D  L       G T LH A   G L  V  L     +
Sbjct: 47  TPLHLAVITNQPEIAEALLGAGCDPELRD---FRGNTPLHLACEQGCLASVGVLTQSCTT 103

Query: 95  TGFR-----TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR 149
                    T+  G T LH+A       IV  L+     V   E   G TALH+A+    
Sbjct: 104 PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN 163

Query: 150 TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
             +V  LL   G DVN +   G SP  +     +T +   L +   
Sbjct: 164 PDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL 208

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  125 bits (316), Expect = 1e-33
 Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 21/173 (12%)

Query: 37  TALHTAAAQGH----IDVVNFLLEIDSNLAKI-ARNN-GKTVLHSAARMGHLEVVKALVS 90
           + LH A         ++V+  +     +LA +  +NN  +T LH A      E+ +AL+ 
Sbjct: 10  SFLHLAIIHEEKALTMEVIRQVK---GDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66

Query: 91  K--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELI-----RPDPSVLKLEDNKGNTALHI 143
              DP      D +G T LH+A +      V  L          S+LK  +  G+T LH+
Sbjct: 67  AGCDPE---LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

Query: 144 AIKKGRTQIVRCLLSIEGIDVNSLNKA-GESPLDVAEKLGNTELFSLLKEAGA 195
           A   G   IV  L+S  G DVN+     G + L +A  L N +L SLL + GA
Sbjct: 124 ASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 175

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 97.6 bits (244), Expect = 2e-23
 Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 18/153 (11%)

Query: 67  NNGKTVLHSAARMGH----LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 122
            +G + LH A         +EV++ +        F+ +   QT LH+AV     +I   L
Sbjct: 6   EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEAL 64

Query: 123 IR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS-----IEGIDVNSLNKAGESPL 175
           +    DP    L D +GNT LH+A ++G    V  L            + + N  G + L
Sbjct: 65  LGAGCDPE---LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121

Query: 176 DVAEKLGNTELFSLLKEAGA---AHSKDHGKPP 205
            +A   G   +  LL   GA   A    +G+  
Sbjct: 122 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 154

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 90.3 bits (225), Expect = 6e-21
 Identities = 21/117 (17%), Positives = 46/117 (39%), Gaps = 2/117 (1%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
           T LH A+  G++ +V  L+ + +++      NG+T LH A  + + ++V  L+       
Sbjct: 119 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178

Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
            R   +G +   +     +  I  +L +     L+    +         +   T+  
Sbjct: 179 -RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ-MLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 78.7 bits (195), Expect = 6e-17
 Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSV---LKLEDNKGNTALHIAIKKGRTQIVRCL 156
            + G + LH+A+  + + + +E+IR        L  ++N   T LH+A+   + +I   L
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 157 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           L   G D    +  G +PL +A + G      +L ++  
Sbjct: 65  LG-AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT 102

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  133 bits (338), Expect = 7e-37
 Identities = 42/168 (25%), Positives = 62/168 (36%), Gaps = 12/168 (7%)

Query: 26  NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKI----ARNNGKTVLHSAARMGH 81
           NL    D S  T  H A + G+++VV  L        K       N G T LH A     
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLY---DRPLKPDLNKITNQGVTCLHLAVGKKW 119

Query: 82  LEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNT 139
            EV + L+            DK  Q  LH A    +  ++  L     S +  +D +G T
Sbjct: 120 FEVSQFLIENGASVRI---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176

Query: 140 ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF 187
            L  A+ +G       L+   G + + ++  G    DVA      + F
Sbjct: 177 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  127 bits (323), Expect = 8e-35
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 4/157 (2%)

Query: 37  TALHTAAAQGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPS 94
             LH + +    ++ +FLL    + NL     ++G T  H A  +G+LEVVK+L  +   
Sbjct: 38  IPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK 97

Query: 95  TGF-RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
               +   +G T LH+AV  +  ++   LI    SV +++D      LH A   G  +++
Sbjct: 98  PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLI 156

Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 190
             L  +    VN  +K G +PL  A   G+ +   LL
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  127 bits (323), Expect = 9e-35
 Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 8/167 (4%)

Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSK-- 91
           +  LH A  +     V  LL   S  + +     +G+  LH +      E+   L+SK  
Sbjct: 3   NYPLHQACMENEFFKVQELLH--SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 92  DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV-LKLEDNKGNTALHIAIKKGRT 150
           + +     D  G T  H+A    N ++V  L        L    N+G T LH+A+ K   
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120

Query: 151 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH 197
           ++ + L+   G  V   +K  + PL  A  +G+ +L  LL   G + 
Sbjct: 121 EVSQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA 166

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 96.0 bits (240), Expect = 4e-23
 Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 9/133 (6%)

Query: 69  GKTVLHSAARMGHL-EVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR- 124
               LH A       +V + L SK          D+ G+  LH +V  Q  +I   L+  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQ---KDQDGRIPLHWSVSFQAHEITSFLLSK 58

Query: 125 -PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS-IEGIDVNSLNKAGESPLDVAEKLG 182
             + ++    D+ G T  HIA   G  ++V+ L       D+N +   G + L +A    
Sbjct: 59  MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK 118

Query: 183 NTELFSLLKEAGA 195
             E+   L E GA
Sbjct: 119 WFEVSQFLIENGA 131

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 81.7 bits (203), Expect = 5e-18
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK---DP 93
             LH AA+ G + ++  L  +  +        G T L  A   GH +    LV K   + 
Sbjct: 142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 201

Query: 94  STGFRTDKKGQTALHMAVKGQNEDIVLELI 123
                 D KG  A  +A+   NE +    +
Sbjct: 202 D---LVDNKGAKAEDVAL---NEQVKKFFL 225

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  133 bits (338), Expect = 8e-37
 Identities = 47/161 (29%), Positives = 68/161 (42%), Gaps = 7/161 (4%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
           T LH AA +GH +VV +LL           + G T +  A    H+++VK L+SK  D +
Sbjct: 79  TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN 138

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
                D +    LH A      DI   L+     +    +  G++ LHIA ++ R   V 
Sbjct: 139 I---RDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVV 194

Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
             LS    DV   NK GE+PL  A           + +A  
Sbjct: 195 LFLS-RDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  129 bits (326), Expect = 4e-35
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 3/159 (1%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
           T L  AA   H++ V +L++  + +       G T LH AA+ GH EVV+ L+S      
Sbjct: 46  TPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104

Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
              D  G T +  A + ++ D+V  L+     +  + DN+ N  LH A   G   I   L
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEIL 163

Query: 157 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           L+    D++++N  G+SPL +A +    +   L     +
Sbjct: 164 LA-AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDS 201

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  126 bits (320), Expect = 4e-34
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 7/161 (4%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
           + LH AA  GH+D+ + L++  +N+      + +T L  AA   HLE VK L+       
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
                D +G T LH+A K  + ++V  L+      +  +D+ G T +  A +     +V+
Sbjct: 72  ---PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128

Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            LLS  G D+N  +      L  A   G  ++  +L  A  
Sbjct: 129 LLLSK-GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC 168

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  110 bits (279), Expect = 2e-28
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
           T +  A    H+D+V  LL   S++  I  N     LH AA  G +++ + L++   D  
Sbjct: 113 TPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH 171

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
                +  G + LH+A +    D V+  +  D  V  L++ +G T L  A    +     
Sbjct: 172 ---AVNIHGDSPLHIAARENRYDCVVLFLSRDSDV-TLKNKEGETPLQCASLNSQVWSAL 227

Query: 155 CLLSIEGID 163
            +      D
Sbjct: 228 QMSK-ALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  103 bits (260), Expect = 9e-26
 Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 6/131 (4%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
            N ++ LH+AA  GH+++   LV    +  T     +  +T L  A +  + + V  LI+
Sbjct: 9   QNKRSPLHAAAEAGHVDICHMLVQAGANIDT---CSEDQRTPLMEAAENNHLEAVKYLIK 65

Query: 125 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 184
               V   +D +G+T LH+A KKG  ++V+ LLS   +DVN  +  G +P+  A +  + 
Sbjct: 66  AGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124

Query: 185 ELFSLLKEAGA 195
           +L  LL   G+
Sbjct: 125 DLVKLLLSKGS 135

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 72.4 bits (179), Expect = 8e-15
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
            +  ++ LH A +  + DI   L++   ++         T L  A +    + V+ L+  
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGANIDT-CSEDQRTPLMEAAENNHLEAVKYLIK- 65

Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
            G  V+  +  G + L +A K G+ E+   L   G  
Sbjct: 66  AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQM 102

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 67.4 bits (166), Expect = 5e-13
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
           + LH AA +   D V   L  DS++  +    G+T L  A+    +     +      + 
Sbjct: 179 SPLHIAARENRYDCVVLFLSRDSDV-TLKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 57.4 bits (140), Expect = 1e-09
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 133 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
           E     + LH A + G   I   L+   G ++++ ++   +PL  A +  + E    L +
Sbjct: 7   EHQNKRSPLHAAAEAGHVDICHMLVQ-AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK 65

Query: 193 AGA 195
           AGA
Sbjct: 66  AGA 68

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  132 bits (334), Expect = 2e-36
 Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 14/190 (7%)

Query: 16  VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 75
              EL  E  +++  TD+S  T      ++G   ++       SN       +    LH 
Sbjct: 27  TPDELYIEEGDIIYITDMSD-TNWWKGTSKGRTGLIP------SNYVAEQAESIDNPLHE 79

Query: 76  AARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLE 133
           AA+ G+L  ++  +      +     DK G TAL+ A  G ++DIV  L       L  +
Sbjct: 80  AAKRGNLSWLRECLDNRVGVNG---LDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQ 136

Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
           +  G+TALH A  KG   IV+ LL+ +G   +  N   +   D+A       L    +  
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLA-KGARTDLRNIEKKLAFDMATNAACASLLKKKQGT 195

Query: 194 GAA-HSKDHG 202
            A     +  
Sbjct: 196 DAVRTLSNAE 205

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  121 bits (307), Expect = 2e-32
 Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 8/159 (5%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
             +  A         + L   + ++  I  +   T        G   ++ +    +    
Sbjct: 14  VKVFRALYTFEPRTPDELYIEEGDIIYIT-DMSDTNWWKGTSKGRTGLIPSNYVAE---- 68

Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
               +     LH A K  N   + E +     V    D  G+TAL+ A   G   IV  L
Sbjct: 69  --QAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEML 125

Query: 157 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            +   I++N  NK G++ L  A   G  ++  LL   GA
Sbjct: 126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  119 bits (301), Expect = 1e-31
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 3/157 (1%)

Query: 26  NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 85
           N V     S    LH AA +G++  +   L+    +       G T L+ A   GH ++V
Sbjct: 64  NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIV 122

Query: 86  KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI 145
           + L ++      + +K G TALH A      DIV  L+        L + +   A  +A 
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMAT 181

Query: 146 KKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 182
                 +++             N       + ++   
Sbjct: 182 NAACASLLKKKQG-TDAVRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 93.8 bits (234), Expect = 3e-22
 Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 13/134 (9%)

Query: 65  ARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 122
               G+  +  A           L  +  D            T            ++   
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIY---ITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 123 IRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 182
              +      +    +  LH A K+G    +R  L    + VN L+KAG + L  A   G
Sbjct: 65  YVAE------QAESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLDKAGSTALYWACHGG 117

Query: 183 NTELFS-LLKEAGA 195
           + ++   L  +   
Sbjct: 118 HKDIVEMLFTQPNI 131

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  132 bits (335), Expect = 3e-36
 Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 13/170 (7%)

Query: 37  TALHTAAAQGHIDVVNFLLE---IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK-- 91
           T LH A +     V   L+     D +      ++G T L  AAR+    +++ L++   
Sbjct: 92  TPLHAAVSADAQGVFQILIRNRATDLD---ARMHDGTTPLILAARLAVEGMLEDLINSHA 148

Query: 92  DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 151
           D +     D  G++ALH A    N D  + L++   +   +++N+  T L +A ++G  +
Sbjct: 149 DVNA---VDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYE 204

Query: 152 IVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDH 201
             + LL     + +  +     P D+A++  + ++  LL      H   H
Sbjct: 205 TAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  125 bits (317), Expect = 1e-33
 Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 3/180 (1%)

Query: 16  VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS 75
           V+ + + +  +L   TD +  TALH AA     D    LLE  ++ A I  N G+T LH+
Sbjct: 38  VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHA 96

Query: 76  AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 135
           A       V + L+    +        G T L +A +   E ++ +LI     V    D+
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDD 155

Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            G +ALH A           LL   G + +  N   E+PL +A + G+ E   +L +  A
Sbjct: 156 LGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 214

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  121 bits (307), Expect = 3e-32
 Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 19/174 (10%)

Query: 37  TALHTAAAQG-------------HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE 83
           T L  A+  G                V++  +   ++L       G+T LH AAR    +
Sbjct: 12  TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD 71

Query: 84  VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTAL 141
             K L+    D +     D  G+T LH AV    + +   LIR   + L    + G T L
Sbjct: 72  AAKRLLEASADANI---QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128

Query: 142 HIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            +A +     ++  L++    DVN+++  G+S L  A  + N +   +L + GA
Sbjct: 129 ILAARLAVEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 74.8 bits (185), Expect = 2e-15
 Identities = 28/137 (20%), Positives = 46/137 (33%), Gaps = 24/137 (17%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD 126
            +G T L  A+  G                      G    +   +     ++ + I   
Sbjct: 8   PDGFTPLMIASCSGG---------------------GLETGNSEEEEDAPAVISDFIYQG 46

Query: 127 PSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL 186
            S+    D  G TALH+A +  R+   + LL     D N  +  G +PL  A       +
Sbjct: 47  ASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGV 105

Query: 187 FSLLKEAGAA--HSKDH 201
           F +L    A    ++ H
Sbjct: 106 FQILIRNRATDLDARMH 122

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  128 bits (325), Expect = 6e-36
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 9/157 (5%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
             L  AA  G  D V  L+   +         G + LH AA+ GH    + L+       
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
                 K  +T LHMA    + +IV  L++    V   +D    TALH A +    ++V 
Sbjct: 62  A---RTKVDRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVE 117

Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
            L+   G DV++ +K  ++  D++   GN +L  +L+
Sbjct: 118 LLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 94.0 bits (235), Expect = 4e-23
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 8/130 (6%)

Query: 68  NGKTVLHSAARMGHLEVVKALVSKDPSTG--FRTDKKGQTALHMAVKGQNEDIVLELIRP 125
           +    L  AAR G  + V+ L++     G  F TD  G + LH+A +  +      L+R 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMAN----GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 126 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 185
             S          T LH+A  +G   IV  LL   G DVN+ +    + L  A +  + E
Sbjct: 57  GVSR-DARTKVDRTPLHMAASEGHANIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQE 114

Query: 186 LFSLLKEAGA 195
           +  LL + GA
Sbjct: 115 VVELLIKYGA 124

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  132 bits (335), Expect = 7e-36
 Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 13/162 (8%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKI-ARNNGKTVLHSAARMGHLEVVKALVSK--DP 93
           T L  A   G  D VN LL    + A +   ++  + +H AAR GH+E V +L++   + 
Sbjct: 127 TPLFNACVSGSWDCVNLLL---QHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNI 183

Query: 94  STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
                      T L++A + Q    V +L+     V +      ++ LH  ++    ++ 
Sbjct: 184 DHK---ISHLGTPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVVRTASEELA 238

Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
             L+   G D  + N  G+ P+++            L+  GA
Sbjct: 239 CLLMD-FGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGA 278

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  120 bits (304), Expect = 2e-31
 Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 13/163 (7%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSK--D 92
           + +H AA  GH   +  L+   S    +     +  + LH A   GHL  VK L+     
Sbjct: 61  SPMHEAAIHGHQLSLRNLI---SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117

Query: 93  PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 152
            +          T L  A    + D V  L++   SV    ++   + +H A ++G  + 
Sbjct: 118 VNG---VTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVEC 172

Query: 153 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           V  L++  G +++       +PL +A +         L E+GA
Sbjct: 173 VNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 214

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  108 bits (272), Expect = 5e-27
 Identities = 35/161 (21%), Positives = 55/161 (34%), Gaps = 10/161 (6%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
             +  +   G  D     L   SN       +  + +H AA  GH   ++ L+S+    +
Sbjct: 29  GGMDGSKPAGPRDFPGIRLL--SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN 86

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
                     + LH A  G +   V  L++    V        +T L  A   G    V 
Sbjct: 87  I---ITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVN 142

Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            LL   G  V   +    SP+  A + G+ E  + L   G 
Sbjct: 143 LLLQ-HGASVQPESD-LASPIHEAARRGHVECVNSLIAYGG 181

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  106 bits (268), Expect = 2e-26
 Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 12/132 (9%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNL-AKIARNNGKTVLHSAARMGHLEVVKALVSK--DP 93
           + +H AA +GH++ VN L+    N+  KI  ++  T L+ A        VK L+    D 
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKI--SHLGTPLYLACENQQRACVKKLLESGADV 216

Query: 94  STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
           +      K   + LH  V+  +E++   L+       + ++ +G   + +   +    + 
Sbjct: 217 N----QGKGQDSPLHAVVRTASEELACLLMDFGADT-QAKNAEGKRPVELVPPES--PLA 269

Query: 154 RCLLSIEGIDVN 165
           +  L  EG  + 
Sbjct: 270 QLFLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  104 bits (261), Expect = 2e-25
 Identities = 31/169 (18%), Positives = 55/169 (32%), Gaps = 15/169 (8%)

Query: 42  AAAQGHIDVVNFLLE----IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF 97
            ++  H    + L+     + S   K    +G          G   +   L+        
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD------ 55

Query: 98  RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 157
                  + +H A    ++  +  LI    +V  +      + LH A   G    V+ LL
Sbjct: 56  --AVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILL 112

Query: 158 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKDHGKPP 205
              G  VN +     +PL  A   G+ +  +LL + GA    +     P
Sbjct: 113 K-HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASP 160

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  131 bits (331), Expect = 3e-35
 Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 20/175 (11%)

Query: 37  TALHTAAAQGHIDVVNFLLE---------IDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
           TA   AA  G +  + FL +               +  R  G T L  AA  GH+EV+K 
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166

Query: 88  LVSK---DPSTGFRTDKKGQTALHMAV----KGQNEDIVLELIRPDPSVLKLEDNKGNTA 140
           L+ +   D +     D  G+ AL  A+        E I   L+     V  +   +G T 
Sbjct: 167 LLDEMGADVNAC---DNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTP 222

Query: 141 LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           L +A++K    +V+ LL  E I++N  +  G++ L +A +L   ++  LL + GA
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  118 bits (298), Expect = 1e-30
 Identities = 44/173 (25%), Positives = 65/173 (37%), Gaps = 20/173 (11%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
             L  A     +D+V  LLE  +N+       G T LH+A +M   ++V+ L+    DP 
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
                 K G T   +A    +  ++   +     V    D  G TA   A   G+ + ++
Sbjct: 67  L---RKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALK 122

Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS------------LLKEAGA 195
            L    G +VN   K  E   +   K G T L              LL E GA
Sbjct: 123 FLYK-RGANVNLRRKTKEDQ-ERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  104 bits (261), Expect = 2e-25
 Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 2/131 (1%)

Query: 65  ARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
           A      +L  A +   +++V+ L+    +  F+ ++ G T LH AV+   EDIV  L+R
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 125 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 184
                  L    G T   +A   G  ++++  LS +G DVN  +  G +    A   G  
Sbjct: 61  HGADP-VLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYGKV 118

Query: 185 ELFSLLKEAGA 195
           +    L + GA
Sbjct: 119 KALKFLYKRGA 129

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  127 bits (321), Expect = 3e-35
 Identities = 46/163 (28%), Positives = 83/163 (50%), Gaps = 10/163 (6%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNL-AKIARNNGKTVLHSAARMGHLEVVKALVSK--DP 93
             L +AAA+G ++ +  LL+ + N+ A+     G+T L    ++G+ E+ + L+ +  +P
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQ--NGFGRTALQ-VMKLGNPEIARRLLLRGANP 63

Query: 94  STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
                 D+ G   +H A +    D +  L+     V  +EDN+GN  LH+A K+G  ++V
Sbjct: 64  D---LKDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVV 119

Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
             L+     +V   N  G++  D+A   G  E+ SL++  GA 
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 98.2 bits (246), Expect = 2e-24
 Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 10/139 (7%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
                 L SAA  G LE + +L+    + +     +  G+TAL +   G N +I   L+ 
Sbjct: 3   EPWGNELASAAARGDLEQLTSLLQNNVNVNA---QNGFGRTALQVMKLG-NPEIARRLLL 58

Query: 125 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 184
              +   L+D  G   +H A + G    ++ LL     DVN  +  G  PL +A K G+ 
Sbjct: 59  RGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHL 116

Query: 185 ELFSLLKEAGAA--HSKDH 201
            +   L +  A+    ++H
Sbjct: 117 RVVEFLVKHTASNVGHRNH 135

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 54.7 bits (133), Expect = 3e-09
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
                  L  A  +G  + +  LL    ++VN+ N  G + L V  KLGN E+   L   
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQ-NNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLR 59

Query: 194 GA 195
           GA
Sbjct: 60  GA 61

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  129 bits (326), Expect = 4e-35
 Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 11/165 (6%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARN------NGKTVLHSAARMGHLEVVKALVS 90
           TA H A        +  LL    + A    +      +G T LH A      E V+ L+ 
Sbjct: 81  TAAHLACEHRSPTCLRALL---DSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE 137

Query: 91  KDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT 150
           +         K G++ L  AV+  +  +V  L++   +V   +   G++ALH A  +G  
Sbjct: 138 RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLL 196

Query: 151 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            +VR L+   G D +  N   ++PL VA      ++        A
Sbjct: 197 PLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  122 bits (309), Expect = 1e-32
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 13/168 (7%)

Query: 37  TALHTAAAQGHIDVVNFLLEID-SNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSK-- 91
           T LH A  QG++  V+ L+ +      ++    N  +T LH A       VV+ LV+   
Sbjct: 11  TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70

Query: 92  DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR---PDPSVLKLEDNKGNTALHIAIKKG 148
            P      D+ GQTA H+A + ++   +  L+    P    L+  +  G TALH+A+   
Sbjct: 71  SPMA---LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 127

Query: 149 RTQIVRCLLSIEGIDVNSLN-KAGESPLDVAEKLGNTELFSLLKEAGA 195
             + V+ LL   G D+++++ K+G SPL  A +  +  +  LL + GA
Sbjct: 128 CQETVQLLLE-RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  105 bits (264), Expect = 2e-26
 Identities = 41/135 (30%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSKDPSTGFR---TDKKGQTALHMAVKGQNEDIVLELI 123
            +G T LH A   G+L  V  LV+     G      +   QT LH+AV      +V  L+
Sbjct: 7   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66

Query: 124 RPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS---IEGIDVNSLNKAGESPLDVAEK 180
               S     D  G TA H+A +      +R LL       +D+ + N  G + L VA  
Sbjct: 67  TAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 125

Query: 181 LGNTELFSLLKEAGA 195
               E   LL E GA
Sbjct: 126 TECQETVQLLLERGA 140

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 77.9 bits (193), Expect = 1e-16
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSV---LKLEDNKGNTALHIAIKKGRTQIVRCL 156
           D+ G T LH+AV   N   V  L+         L + +N   T LH+A+      +VR L
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

Query: 157 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 200
           ++  G    +L++ G++   +A +  +      L ++ A  + D
Sbjct: 66  VT-AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 108

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  131 bits (332), Expect = 1e-34
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 13/171 (7%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLE---VVKALVSK 91
           +ALH AAA     ++ ++L        I     NG T L   A     +     K LV K
Sbjct: 201 SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK 260

Query: 92  -------DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA 144
                    +       KG+TALH A +  N  IV  L+    S    +D  G T + +A
Sbjct: 261 GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA 320

Query: 145 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            ++GR ++V  L+  +G  V +++    +   +A+   +  +  +      
Sbjct: 321 AQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  127 bits (321), Expect = 3e-33
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 15/172 (8%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
           T L  A       +V +L++  ++   I   + ++ LH AA      ++  +++      
Sbjct: 168 TPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTK-LK 225

Query: 97  F---RTDKKGQTALHMAVKGQNEDIVLE---LI-------RPDPSVLKLEDNKGNTALHI 143
                 D+ G TAL +    +  D V     L+           +    E  KG TALH 
Sbjct: 226 GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY 285

Query: 144 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           A +     IV+ L+  +G + +  ++ G++P+ +A + G  E+   L + GA
Sbjct: 286 AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA 337

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  123 bits (311), Expect = 8e-32
 Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 16/171 (9%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
             LH   A G   +   +     N+      + +TVLH  A     E  + L+  +    
Sbjct: 96  IKLH-TEAAGSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 152

Query: 97  F-------RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR 149
                     D    T L +AV  +   +V  L++       + +    +ALH A     
Sbjct: 153 IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRD 211

Query: 150 TQIVRCLLS--IEGIDVNSLNKAGESPLDVAEKLGNTELFS---LLKEAGA 195
             ++  +L+      D+  L++ G + L +       +  +   LL E GA
Sbjct: 212 FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA 262

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  112 bits (282), Expect = 9e-28
 Identities = 35/182 (19%), Positives = 66/182 (36%), Gaps = 27/182 (14%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNL-----AKI--ARNNGKTVLHSAARMGHLEVVKALV 89
           T LH  A+    +    L+  ++       A +     +  T L  A       +V  L+
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM 186

Query: 90  SK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLE--DNKGNTALHIAI 145
               DP+     +K  ++ALH A   ++  +++ ++        +E  D  G TAL I  
Sbjct: 187 KAGADPTI---YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 243

Query: 146 KKGRT---QIVRCLLSIEGIDVNSL--------NKAGESPLDVAEKLGNTELFS-LLKEA 193
                      + L+  +G  V+             G + L  A ++ N  +   L+ E 
Sbjct: 244 HNEGRDQVASAKLLVE-KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK 302

Query: 194 GA 195
           G+
Sbjct: 303 GS 304

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  105 bits (265), Expect = 2e-25
 Identities = 30/174 (17%), Positives = 56/174 (32%), Gaps = 25/174 (14%)

Query: 31  TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVS 90
           +  S   +L  A+  G+I      L+          +            G+  +     +
Sbjct: 33  SITSSQHSLLEASYDGYIKRQRNELQ----------HYSLYPNPQGYGNGNDFLGDFNHT 82

Query: 91  K--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 148
               P+     + +    LH    G +  I   + R   +++        T LH      
Sbjct: 83  NLQIPTEP---EPESPIKLHTEAAG-SYAITEPITRESVNIID--PRHNRTVLHWIASNS 136

Query: 149 RTQIVRCLLSIE-------GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
             +    L+  E       G DVN+++    +PL +A       L + L +AGA
Sbjct: 137 SAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA 190

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 7/109 (6%), Positives = 18/109 (16%), Gaps = 13/109 (11%)

Query: 98  RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 157
           ++    Q +L  A            +           +            G   +     
Sbjct: 32  QSITSSQHSLLEASYDGYIKRQRNEL----------QHYSLYPNPQGYGNGNDFLGDFNH 81

Query: 158 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKDHGKPP 205
           +                L      G+  +   +           H +  
Sbjct: 82  T-NLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDPRHNRTV 128

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  131 bits (331), Expect = 1e-34
 Identities = 23/177 (12%), Positives = 57/177 (32%), Gaps = 22/177 (12%)

Query: 37  TALHTAAAQGHIDVVNFLLEI--DSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSK- 91
           T L  A    + + ++ +++     +  ++  A   G + LH A  +   +V    V   
Sbjct: 175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG 234

Query: 92  -DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL------------EDNKGN 138
            D +     D +    L+++V+     +  EL++     L              +     
Sbjct: 235 IDVNM---EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWL 291

Query: 139 TALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
             +  A    + ++++ L   +  +V      G       +K     +  +     A
Sbjct: 292 DFVPAAADPSKQEVLQLLQE-KLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSA 347

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  123 bits (310), Expect = 1e-31
 Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 20/156 (12%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
           TALH A   G +D   +L    S     +  +G+  +H A      ++V ALV       
Sbjct: 55  TALHLACKFGCVDTAKYLA---SVGEVHSLWHGQKPIHLAVMANKTDLVVALVEG----- 106

Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG--RTQIVR 154
               ++GQ    +  +    ++             ++  KG TALH  +  G    ++++
Sbjct: 107 --AKERGQMPESLLNECDEREVNEIGS-------HVKHCKGQTALHWCVGLGPEYLEMIK 157

Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 190
            L+   G    + +KA E+PL  A +  N E   L+
Sbjct: 158 ILVQ-LGASPTAKDKADETPLMRAMEFRNREALDLM 192

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  121 bits (305), Expect = 6e-31
 Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 15/155 (9%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK----- 91
           + LH A      DV    +E+  ++  +  N     L+ + R   + + K L+ K     
Sbjct: 213 SHLHWAILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFL 271

Query: 92  -------DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA 144
                  + +T           +  A     ++++  L      V     N G       
Sbjct: 272 IQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV-VRSLNTGAGGAVKR 330

Query: 145 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE 179
            KK    + R  L+     V + +++      V++
Sbjct: 331 KKKAAPAVKRMKLA-PSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  119 bits (302), Expect = 2e-30
 Identities = 33/177 (18%), Positives = 67/177 (37%), Gaps = 20/177 (11%)

Query: 37  TALHTAAAQG--HIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPS 94
           TALH     G  +++++  L+++ ++         +T L  A    + E +  ++   PS
Sbjct: 140 TALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPS 198

Query: 95  TGF----RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT 150
                    +K+G + LH A+    ED+ +  +     V  +EDN+    L+++++    
Sbjct: 199 KSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYLSVRAAMV 257

Query: 151 QIVRCLLS------------IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            + + LL               G  V          +  A      E+  LL+E   
Sbjct: 258 LLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLD 314

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  114 bits (288), Expect = 1e-28
 Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 20/161 (12%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
             +H AA +G  D V  L+E   +   I    G T LH A + G ++  K L S      
Sbjct: 22  EKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLASVGEVH- 79

Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
             +   GQ  +H+AV     D+V+ L+       +    +G     +  +    ++    
Sbjct: 80  --SLWHGQKPIHLAVMANKTDLVVALV-------EGAKERGQMPESLLNECDEREVN--- 127

Query: 157 LSIEGIDVNSLNKAGESPLDVAEKLGN--TELFSLLKEAGA 195
                I  +  +  G++ L     LG    E+  +L + GA
Sbjct: 128 ----EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA 164

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.9 bits (185), Expect = 5e-15
 Identities = 10/83 (12%), Positives = 25/83 (30%), Gaps = 2/83 (2%)

Query: 28  VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
           V+   +     +  AA     +V+  L E    +   + N G        +     V + 
Sbjct: 283 VLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV-VRSLNTGAGGAVKRKKKAAPAVKRM 341

Query: 88  LVSKDPSTGFRTDKKGQTALHMA 110
            ++       R  +    +  ++
Sbjct: 342 KLAPSAPVRTR-SRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 72.2 bits (178), Expect = 4e-14
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 99  TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
           +D +    +H+A +    D V  LI    S   +++  G TALH+A K G     + L S
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
             G   +  +  G+ P+ +A     T+L   L E   
Sbjct: 75  -VGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAK 108

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 133 EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
            D++    +H+A +KG+T  VR L+   G+     N+ G + L +A K G  +    L  
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIE-TGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 193 AGAAHSKDHGKPP 205
            G  HS  HG+ P
Sbjct: 75  VGEVHSLWHGQKP 87

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  124 bits (315), Expect = 3e-34
 Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 8/161 (4%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
             L  AA  G ++ V  L  + S   +       T LH AA    + VV+ L+    D  
Sbjct: 10  RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 69

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
                DK G   LH A    + ++   L++    V  + D    T LH A  KG+ +I +
Sbjct: 70  ---AKDKGGLVPLHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICK 125

Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            LL   G D    N+ G +PLD+ +  G+T++  LL+   A
Sbjct: 126 LLLQ-HGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 93.2 bits (233), Expect = 1e-22
 Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 8/132 (6%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD 126
           +     L  AA+ G +E VK L +         + +  T LH A       +V  L+   
Sbjct: 6   SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL--- 62

Query: 127 PSV---LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN 183
                 +  +D  G   LH A   G  ++   L+   G  VN  +    +PL  A   G 
Sbjct: 63  -QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGK 120

Query: 184 TELFSLLKEAGA 195
            E+  LL + GA
Sbjct: 121 YEICKLLLQHGA 132

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 75.1 bits (186), Expect = 3e-16
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
           + +    L  A K  + + V +L        +  + + +T LH A    R  +V  LL  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ- 63

Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            G DV++ +K G  PL  A   G+ E+  LL + GA
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 99

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  123 bits (311), Expect = 1e-33
 Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
             L  AA  G  D V  L+   +++      +G T LH AA  GHLE+V+ L+    D +
Sbjct: 16  KKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
                D  G T L +A    + +IV  L++    V    D +G+T LH+A   G  +IV 
Sbjct: 75  AV---DHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVE 130

Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
            LL   G DVN+ +K G++  D++   GN +L  +L++
Sbjct: 131 VLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 97.8 bits (245), Expect = 2e-24
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
           ++    L  AAR G  + V+ L++   D +     D  G T LH+A    + +IV  L++
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNA---EDASGWTPLHLAAFNGHLEIVEVLLK 68

Query: 125 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 184
               V    D+ G T L +A   G  +IV  LL   G DVN+ +  G +PL +A   G+ 
Sbjct: 69  NGADV-NAVDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHL 126

Query: 185 ELFSLLKEAGA 195
           E+  +L + GA
Sbjct: 127 EIVEVLLKNGA 137

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 68.5 bits (169), Expect = 6e-14
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKD 92
           T LH AA  GH+++V  LL+  +++       GKT    +   G+ ++ + L   +
Sbjct: 115 TPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 65.5 bits (161), Expect = 6e-13
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 2/96 (2%)

Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
                  L  A +   +D V  L+     V   ED  G T LH+A   G  +IV  LL  
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLK- 68

Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            G DVN+++ AG +PL +A   G+ E+  +L + GA
Sbjct: 69  NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA 104

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 56.2 bits (137), Expect = 1e-09
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
                 +     L  A + GR   VR L++  G DVN+ + +G +PL +A   G+ E+  
Sbjct: 6   HHHHHGSDLGKKLLEAARAGRDDEVRILMA-NGADVNAEDASGWTPLHLAAFNGHLEIVE 64

Query: 189 LLKEAGA 195
           +L + GA
Sbjct: 65  VLLKNGA 71

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  122 bits (310), Expect = 3e-33
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 16/166 (9%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNL-AKIARNNGKTVLHSAARMGHLEVVKALVSK--DP 93
           T L  A   G  + ++ L+E    L  K     G T L  A +   L + + L+SK  + 
Sbjct: 37  TPLMVACMLGMENAIDKLVENFDKLEDK--DIEGSTALIWAVKNNRLGIAEKLLSKGSNV 94

Query: 94  STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV---LKLEDNKGNTALHIAIKKGRT 150
           +T    D  G+T L  ++     ++   L+         +   + +G T L +A K GR+
Sbjct: 95  NT---KDFSGKTPLMWSIIFGYSEMSYFLL----EHGANVNDRNLEGETPLIVASKYGRS 147

Query: 151 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
           +IV+ LL + G D+++ +  G +    A   G  E+  +  E   A
Sbjct: 148 EIVKKLLEL-GADISARDLTGLTAEASARIFGRQEVIKIFTEVRRA 192

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  104 bits (263), Expect = 1e-26
 Identities = 44/164 (26%), Positives = 64/164 (39%), Gaps = 20/164 (12%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
                   +     ++FL     +         +T L  A  +G    +  LV       
Sbjct: 10  IVEKIKDEKSINQNLDFLRNYRDS-------YNRTPLMVACMLGMENAIDKLVENFDKLE 62

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV---LKLEDNKGNTALHIAIKKGRTQ 151
                D +G TAL  AVK     I  +L+    S    +  +D  G T L  +I  G ++
Sbjct: 63  D---KDIEGSTALIWAVKNNRLGIAEKLL----SKGSNVNTKDFSGKTPLMWSIIFGYSE 115

Query: 152 IVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           +   LL   G +VN  N  GE+PL VA K G +E+   L E GA
Sbjct: 116 MSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA 158

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 89.0 bits (222), Expect = 7e-21
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 15/132 (11%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD 126
            NG+ V          + +  L +         D   +T L +A     E+ + +L+   
Sbjct: 6   KNGEIVEKIKDEKSINQNLDFLRNY-------RDSYNRTPLMVACMLGMENAIDKLV--- 55

Query: 127 PSV---LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN 183
                 L+ +D +G+TAL  A+K  R  I   LLS  G +VN+ + +G++PL  +   G 
Sbjct: 56  -ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPLMWSIIFGY 113

Query: 184 TELFSLLKEAGA 195
           +E+   L E GA
Sbjct: 114 SEMSYFLLEHGA 125

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 65.5 bits (161), Expect = 1e-12
 Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 8/96 (8%)

Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
           DK G+    +  +      +  L           D+   T L +A   G    +  L+  
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLR-------NYRDSYNRTPLMVACMLGMENAIDKLVEN 57

Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
               +   +  G + L  A K     +   L   G+
Sbjct: 58  -FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS 92

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  120 bits (305), Expect = 5e-33
 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 13/158 (8%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSK--D 92
             L  AAA+G +  V  LL     L         GKT L      G   +   L+ +   
Sbjct: 4   DRLSGAAARGDVQEVRRLLH--RELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60

Query: 93  PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 152
           P+     D  G + +H A +    D +  L+     V  + D  G   +H+A+++G T +
Sbjct: 61  PNV---QDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAV 116

Query: 153 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 190
           V  L +    D++  +  G +PL++A + G  +L  +L
Sbjct: 117 VSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  105 bits (265), Expect = 3e-27
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 11/125 (8%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
           TAL      G   +   LL+  ++   +   +G + +H AAR G L+ +K LV    D +
Sbjct: 38  TALQ-VMMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 95

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELI-RPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
                D  G   +H+AV+  +  +V  L    D       D +G T L +A+++G   +V
Sbjct: 96  V---PDGTGALPIHLAVQEGHTAVVSFLAAESDLHR---RDARGLTPLELALQRGAQDLV 149

Query: 154 RCLLS 158
             L  
Sbjct: 150 DILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 91.7 bits (229), Expect = 3e-22
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 3/133 (2%)

Query: 69  GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS 128
               L  AA  G ++ V+ L+ ++       ++ G+TAL + + G +  I LEL++   S
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALELLKQGAS 60

Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
              ++D  G + +H A + G    ++ L+   G DVN  +  G  P+ +A + G+T + S
Sbjct: 61  P-NVQDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 189 LLKEAGAAHSKDH 201
            L      H +D 
Sbjct: 119 FLAAESDLHRRDA 131

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 65.9 bits (162), Expect = 4e-13
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 102 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 161
           +    L  A    +   V  L+  +       +  G TAL + +  G T I   LL  +G
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLK-QG 58

Query: 162 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
              N  + +G SP+  A + G  +   +L E GA
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA 92

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 54.0 bits (131), Expect = 5e-09
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           +    L  A  +G  Q VR LL  E +  ++LN+ G++ L V    G+T +   L + GA
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGA 59

Query: 196 -AHSKD 200
             + +D
Sbjct: 60  SPNVQD 65

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  126 bits (319), Expect = 6e-33
 Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 9/164 (5%)

Query: 37  TALHTAAAQGHID-VVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DP 93
             L  AA  G+ + ++  L  ++ N    +     T LH AA    + +V+ L+    D 
Sbjct: 26  DELLEAARSGNEEKLMALLTPLNVNC-HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV 84

Query: 94  STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
                 DK G   LH A    + ++   L++    V    D    T LH A  K R ++ 
Sbjct: 85  HA---KDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVC 140

Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH 197
             LLS  G D   +N  G+S +D+A      E  +   +  +  
Sbjct: 141 SLLLS-HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLL 183

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  117 bits (296), Expect = 1e-29
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 19/162 (11%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
           T LH AA++  ++V + LL   ++   +   +GK+ +  A      E +           
Sbjct: 126 TPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFK------ 178

Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG---RTQIV 153
                 G + L  A +  +   V + +  +    K +     TALH A+      R Q+ 
Sbjct: 179 ------GHSLLQAAREA-DLAKVKKTLALEIINFK-QPQSHETALHCAVASLHPKRKQVA 230

Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
             LL  +G +VN  NK   +PL VA +  + ++  +L + GA
Sbjct: 231 ELLLR-KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  113 bits (285), Expect = 3e-28
 Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 10/155 (6%)

Query: 28  VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR-NNGKTVLHSAARMGH---LE 83
            +T +    + L  A  +  +  V   L     +    +  + +T LH A    H    +
Sbjct: 172 RLTYEFKGHSLLQAA-READLAKVKKTLA--LEIINFKQPQSHETALHCAVASLHPKRKQ 228

Query: 84  VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 143
           V + L+ K  +   + +K   T LH+A +  + D++  L +    +    D+ G TALH 
Sbjct: 229 VAELLLRKGANVNEK-NKDFMTPLHVAAERAHNDVMEVLHKHGAKM-NALDSLGQTALHR 286

Query: 144 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 178
           A   G  Q  R LLS  G D + ++  G +   + 
Sbjct: 287 AALAGHLQTCRLLLS-YGSDPSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  111 bits (280), Expect = 1e-27
 Identities = 37/187 (19%), Positives = 59/187 (31%), Gaps = 34/187 (18%)

Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSK-- 91
           ST LH AA    + +V  LL    + A +      G   LH+A   GH EV + L+    
Sbjct: 59  STPLHLAAGYNRVRIVQLLL---QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115

Query: 92  DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 151
             +     D    T LH A      ++   L+        L +  G +A+ +A      +
Sbjct: 116 CVNA---MDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRE 171

Query: 152 IVRCLLS--------------------IEGIDVNSLNKAGESPLDVA---EKLGNTELFS 188
            +                            I      ++ E+ L  A         ++  
Sbjct: 172 RLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAE 231

Query: 189 LLKEAGA 195
           LL   GA
Sbjct: 232 LLLRKGA 238

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  109 bits (275), Expect = 8e-27
 Identities = 35/162 (21%), Positives = 68/162 (41%), Gaps = 19/162 (11%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
           +A+  A      + + +               G ++L  AAR   L  VK  ++ +    
Sbjct: 159 SAVDMAPTPELRERLTYEF------------KGHSLLQ-AAREADLAKVKKTLALEIIN- 204

Query: 97  FRTDKKGQTALHMAVK---GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
           F+  +  +TALH AV     + + +   L+R   +V   ++    T LH+A ++    ++
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVM 263

Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
             L    G  +N+L+  G++ L  A   G+ +   LL   G+
Sbjct: 264 EVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS 304

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  104 bits (262), Expect = 4e-25
 Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 22/154 (14%)

Query: 37  TALHTAAAQGH---IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK-- 91
           TALH A A  H     V   LL   +N+      +  T LH AA   H +V++ L     
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271

Query: 92  DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGR 149
             +     D  GQTALH A    +      L+    DPS+      +G TA  +      
Sbjct: 272 KMNA---LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI---ISLQGFTAAQMG----- 320

Query: 150 TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN 183
            + V+ +LS E   + + +      L  A K G+
Sbjct: 321 NEAVQQILS-ESTPMRTSDVDY--RLLEASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 97.2 bits (243), Expect = 2e-22
 Identities = 39/162 (24%), Positives = 59/162 (36%), Gaps = 22/162 (13%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL-EVVKALVSK--DP 93
           +AL  A       +                   K  L  AAR G+  +++  L     + 
Sbjct: 6   SALDLADPSAKAVLTG--------------EYKKDELLEAARSGNEEKLMALLTPLNVNC 51

Query: 94  STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
                +D +  T LH+A       IV  L++    V   +D  G   LH A   G  ++ 
Sbjct: 52  HA---SDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVT 107

Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
             LL   G  VN+++    +PL  A      E+ SLL   GA
Sbjct: 108 ELLLK-HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 73.7 bits (182), Expect = 1e-14
 Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 15/129 (11%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD 126
             GK+ L              L           + K    L  A  G  E ++  L   +
Sbjct: 2   EFGKSALD-------------LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLN 48

Query: 127 PSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL 186
            +     D + +T LH+A    R +IV+ LL   G DV++ +K G  PL  A   G+ E+
Sbjct: 49  VNC-HASDGRKSTPLHLAAGYNRVRIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEV 106

Query: 187 FSLLKEAGA 195
             LL + GA
Sbjct: 107 TELLLKHGA 115

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 53.3 bits (129), Expect = 6e-08
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 113 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGE 172
           G+     L+L  P    +   + K +  L  A      +++  L     ++ ++ +    
Sbjct: 1   GEFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKS 59

Query: 173 SPLDVAEKLGNTELFSLLKEAGA 195
           +PL +A       +  LL + GA
Sbjct: 60  TPLHLAAGYNRVRIVQLLLQHGA 82

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  122 bits (309), Expect = 1e-32
 Identities = 31/165 (18%), Positives = 64/165 (38%), Gaps = 14/165 (8%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKI-ARNNGKTVLHSAARMGHLEVVKALVSK--DP 93
            +L            +  +   ++  ++        +L  ++  G  ++V+ ++ +  DP
Sbjct: 7   VSLPPGKRTNLRKTGSERI---AHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDP 63

Query: 94  STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
           S     + +G TALH AV   + +IV  L++   +V    D+ G T LH A      Q+ 
Sbjct: 64  SLP---NDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSDGWTPLHCAASCNNVQVC 119

Query: 154 RCLLSIEGIDVNSLNKAGE---SPLDVAEKLGNTELFSLLKEAGA 195
           + L+   G  V ++  +     +      + G T+    L     
Sbjct: 120 KFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  122 bits (308), Expect = 2e-32
 Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 9/169 (5%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
             L  ++ +G  D+V  ++    +   +  + G T LH+A   GH E+VK LV    + +
Sbjct: 39  ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 97

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQI 152
                D  G T LH A    N  +   L+        +   D +        +++G TQ 
Sbjct: 98  ---AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC 154

Query: 153 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDH 201
            + L       +  +NK     L   E   + EL     +      ++ 
Sbjct: 155 SQFLYG-VQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHRED 202

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  103 bits (259), Expect = 1e-25
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 8/131 (6%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR-- 124
             G+  L    R    +     ++      F  +      L  +      D+V  +I   
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 125 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 184
            DPS+    +++G TALH A+  G T+IV+ L+   G++VN+ +  G +PL  A    N 
Sbjct: 61  DDPSL---PNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNV 116

Query: 185 ELFSLLKEAGA 195
           ++   L E+GA
Sbjct: 117 QVCKFLVESGA 127

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
           +  GQ +L    +        E I     V    +      L  +  +G   +V+ ++  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIY- 58

Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           E  D +  N  G + L  A   G+TE+   L + G 
Sbjct: 59  EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 94

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 3/85 (3%)

Query: 32  DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK 91
           D+  +        +G+     FL  +   +  I        L         E+   +   
Sbjct: 136 DMQTAADKCEEMEEGYTQCSQFLYGVQEKM-GIMNKGVIYALWDYEPQNDDEL--PMKEG 192

Query: 92  DPSTGFRTDKKGQTALHMAVKGQNE 116
           D  T    + + +     A     E
Sbjct: 193 DCMTIIHREDEDEIEWWWARLNDKE 217

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  121 bits (305), Expect = 1e-32
 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 9/160 (5%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK-DPST 95
                    GH         I +++     +  +T   +AAR    + +  L+   D   
Sbjct: 16  MEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQALSQLLEDRDVDA 71

Query: 96  GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 155
               D+ G+TAL       ++  V  L      +   +   G TALH+A    R ++V  
Sbjct: 72  ---VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128

Query: 156 LLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           L+   G D+   ++ G + L++A ++  T       + G 
Sbjct: 129 LVE-LGADIEVEDERGLTALELAREILKTTPKGNPMQFGR 167

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  109 bits (274), Expect = 3e-28
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 6/130 (4%)

Query: 37  TALHTAAAQGHIDVVNFLLE-IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPST 95
           T   TAA +     ++ LLE  D +       NG+T L   A +G  + V+ L       
Sbjct: 46  TPWWTAARKADEQALSQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADL 102

Query: 96  GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 155
             R  + G TALHMA      ++V  L+     + ++ED +G TAL +A +  +T     
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGN 161

Query: 156 LLSIEGIDVN 165
            +   G  + 
Sbjct: 162 PMQF-GRRIG 170

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 95.3 bits (238), Expect = 3e-23
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 10/142 (7%)

Query: 56  EIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN 115
           E++  +       G        + GH                    + +T    A +  +
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI----AADVVSEYETPWWTAARKAD 56

Query: 116 EDIVLELIR-PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN-KAGES 173
           E  + +L+   D       D  G TAL      G  + VR L    G D++  + + G +
Sbjct: 57  EQALSQLLEDRDVDA---VDENGRTALLFVAGLGSDKCVRLLAE-AGADLDHRDMRGGLT 112

Query: 174 PLDVAEKLGNTELFSLLKEAGA 195
            L +A      E+   L E GA
Sbjct: 113 ALHMAAGYVRPEVVEALVELGA 134

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 48.6 bits (117), Expect = 5e-07
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 17/71 (23%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA----------------ARMG 80
           TALH AA     +VV  L+E+ +++ ++    G T L  A                 R+G
Sbjct: 112 TALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQFGRRIG 170

Query: 81  HLEVVKALVSK 91
             +V+  L  +
Sbjct: 171 LEKVINVLEGQ 181

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  124 bits (313), Expect = 1e-32
 Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 11/168 (6%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
           T L  A  +   +++   +            + +       R+   +  + L S   +  
Sbjct: 141 TPLDIAEEEAMEELLQNEVNRQGV-------DIEAARKEEERIMLRDARQWLNSGHINDV 193

Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
            R  K G TALH+A      +++  LI+    V  ++D  G T LH A   G+ +  R L
Sbjct: 194 -RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 157 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS-KDHGK 203
           +     D+ ++NK G++  DVA++     L  L K+    HS K   K
Sbjct: 252 VE-NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREKK 298

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  122 bits (309), Expect = 4e-32
 Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 11/163 (6%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKI-ARNNGKTVLHSAARMGHLEVVKALVSK--DP 93
                    G    +   +       K   + +   V  +A   G  E V  L+ +  D 
Sbjct: 10  RNEQLKRWIGSETDLEPPV---VKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI 66

Query: 94  STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
           +     +  G TALH A    N D+V  L+    ++    DN+G   LH A   G   I 
Sbjct: 67  NY---ANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIA 122

Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
             L+S +G  V ++N  G++PLD+AE+    EL          
Sbjct: 123 EYLIS-QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV 164

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  116 bits (293), Expect = 8e-30
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 9/150 (6%)

Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DP 93
                 A + G  + V  LLE  +++   A  +G T LH A    ++++VK LV    + 
Sbjct: 41  GAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANI 99

Query: 94  STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
           +   + D +G   LH A      DI   LI     V    +++G+T L IA ++   +++
Sbjct: 100 N---QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEELL 155

Query: 154 RCLLSIEGIDVNSLNKAGESPL--DVAEKL 181
           +  ++ +G+D+ +  K  E  +  D  + L
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRDARQWL 185

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 87.6 bits (218), Expect = 2e-19
 Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 4/133 (3%)

Query: 63  KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 122
           K+A    K        +G    ++  V K   T  +           A    + + VL L
Sbjct: 2   KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKT--KVKFDDGAVFLAACSSGDTEEVLRL 59

Query: 123 IRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 182
           +     +    +  G TALH A       +V+ L+   G ++N  +  G  PL  A   G
Sbjct: 60  LERGADI-NYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQPDNEGWIPLHAAASCG 117

Query: 183 NTELFSLLKEAGA 195
             ++   L   GA
Sbjct: 118 YLDIAEYLISQGA 130

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 46.7 bits (112), Expect = 6e-06
 Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 2/66 (3%)

Query: 130 LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL 189
           +K+ D K      +    G    +   +  +          G   L      G+TE    
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVV-KRKKTKVKFDDGAVFLAACSS-GDTEEVLR 58

Query: 190 LKEAGA 195
           L E GA
Sbjct: 59  LLERGA 64

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  121 bits (306), Expect = 2e-32
 Identities = 42/179 (23%), Positives = 68/179 (37%), Gaps = 21/179 (11%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKI-AR-NNGKTVLHSAARMGHLEVVKALVSKDPS 94
           + L  AA +  +  ++ LL+      ++  R   G+T LH AA   +LE    L+   P 
Sbjct: 5   SPLLLAAKENDVQALSKLLK--FEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 95  TGFRT----DKKGQTALHMAVKGQNEDIVLELI------------RPDPSVLKLEDNKGN 138
             F        +GQTALH+AV  QN ++V  L+                         G 
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122

Query: 139 TALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH 197
             L  A   G  +IVR L+   G D+ + +  G + L +     N      +     ++
Sbjct: 123 HPLSFAACVGSEEIVRLLIE-HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSY 180

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  115 bits (289), Expect = 7e-30
 Identities = 45/187 (24%), Positives = 68/187 (36%), Gaps = 32/187 (17%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARN----NGKTVLHSAARMGHLEVVKALVS-- 90
           TALH AA   +++    L+E    L           G+T LH A    ++ +V+AL++  
Sbjct: 39  TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG 98

Query: 91  -----KD-----PSTGFRTDKKGQTALHMAVKGQNEDIVLELI--RPDPSVLKLEDNKGN 138
                +                G+  L  A    +E+IV  LI    D      +D+ GN
Sbjct: 99  ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA---QDSLGN 155

Query: 139 TALHIAIKKGRTQIVR----CLLSIEGIDVN------SLNKAGESPLDVAEKLGNTELFS 188
           T LHI I +            LLS      +        N  G +P  +A   GN  +F 
Sbjct: 156 TVLHILILQPNKTFACQMYNLLLSY-DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQ 214

Query: 189 LLKEAGA 195
            L +   
Sbjct: 215 HLMQKRK 221

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 86.5 bits (215), Expect = 1e-19
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 24/147 (16%)

Query: 69  GKTVLHSAARMGHLEVV-KALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP 125
            ++ L  AA+   ++ + K L  +  +     +    G+TALH+A    N +  + L+  
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEV---HQRGAMGETALHIAALYDNLEAAMVLMEA 59

Query: 126 DPSVLKL----EDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK------------ 169
            P ++      E  +G TALHIA+      +VR LL+  G  V++               
Sbjct: 60  APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA-RGASVSARATGSVFHYRPHNLI 118

Query: 170 -AGESPLDVAEKLGNTELFSLLKEAGA 195
             GE PL  A  +G+ E+  LL E GA
Sbjct: 119 YYGEHPLSFAACVGSEEIVRLLIEHGA 145

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  122 bits (309), Expect = 3e-32
 Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 3/163 (1%)

Query: 30  TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV 89
           T D S + A   +      +      +    L +    +G T LH A      E+V+ L 
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLR 178

Query: 90  SKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR 149
                        G+T LH+AV+ Q   ++  L++            G T L  A+ +  
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPN 237

Query: 150 TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
             + R L +  G           SP   +    +++      E
Sbjct: 238 PILARLLRA-HGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  113 bits (286), Expect = 6e-29
 Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 22/188 (11%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSK--D 92
           TALH A    H   ++FLL   +    +    + G+T LH AA +G    V+ L +    
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 93  PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLK------------LEDNKGNTA 140
                  ++ G TALH+A + +       L++P PS  +               +  +  
Sbjct: 71  VLV---AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127

Query: 141 LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA---AH 197
             +  +               + + + N  G +PL VA    + E+  LL++AGA     
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187

Query: 198 SKDHGKPP 205
               G+ P
Sbjct: 188 EPTCGRTP 195

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  113 bits (285), Expect = 7e-29
 Identities = 40/172 (23%), Positives = 59/172 (34%), Gaps = 15/172 (8%)

Query: 37  TALHTAAAQGHIDVVNFLLE---------IDSNLAKIARNNGKT----VLHSAARMGHLE 83
           TALH A           LL+          D+ L +       T        +      E
Sbjct: 80  TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENE 139

Query: 84  VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI 143
                           +  G T LH+AV  ++ ++V  L      + K E   G T LH+
Sbjct: 140 EEPRDEDWRLQLEAE-NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL 198

Query: 144 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           A++     ++  LL   G D  +    G +PL  A    N  L  LL+  GA
Sbjct: 199 AVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 95.3 bits (238), Expect = 2e-22
 Identities = 26/124 (20%), Positives = 38/124 (30%), Gaps = 6/124 (4%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
            +G T LH A    H   +  L+            +  GQTALH+A        V +L  
Sbjct: 7   EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66

Query: 125 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL--DVAEKLG 182
               V  + +  G+TALH+A +         LL                    D      
Sbjct: 67  AGAGV-LVAERGGHTALHLACRVRAHTCACVLLQ-PRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 183 NTEL 186
           +   
Sbjct: 125 HAPA 128

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 86.1 bits (214), Expect = 4e-19
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 3/104 (2%)

Query: 99  TDKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
             + G TALH+AV  Q+E  +  L+        L L+++ G TALH+A   G    V  L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 157 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 200
            +  G  V    + G + L +A ++       +L +   +H +D
Sbjct: 65  YA-AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRD 107

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 82.6 bits (205), Expect = 7e-18
 Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 6/92 (6%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
           T LH A       V+  LL+  ++        G+T L SA    +  + + L +      
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPD 126
                     +    +    + D   E    D
Sbjct: 253 ---EDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLS--IEGIDVNSLNKAGESPLDVAEKLGNTEL 186
           V       G+TALH+A+       +  LL        ++  N  G++ L +A  LG    
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 187 FSLLKEAGA 195
              L  AGA
Sbjct: 61  VEKLYAAGA 69

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  120 bits (303), Expect = 4e-32
 Identities = 32/161 (19%), Positives = 70/161 (43%), Gaps = 7/161 (4%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
           T L+ A     I++   L++  +++  +  +   +    A   G  E++  ++       
Sbjct: 41  TPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDL 99

Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAI-----KKGRTQ 151
            + ++ G  AL  A +  + D V  L+      +  +++ G TAL  A+      +    
Sbjct: 100 NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159

Query: 152 IVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
           IV+ L+   G D +  + +G + +D A + G TE+  +L +
Sbjct: 160 IVKLLMEN-GADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  119 bits (302), Expect = 5e-32
 Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 11/166 (6%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
             L  A  +    V   L +    +       G T L+ A     +E+ KAL+ +  D +
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
                +    +    A      +I+  +++     L   +  G  AL  A +KG    V+
Sbjct: 67  ---LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123

Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKL-----GNTELFSLLKEAGA 195
            LL     D++  N  G + L  A  L        ++  LL E GA
Sbjct: 124 LLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  100 bits (251), Expect = 8e-25
 Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 6/132 (4%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
                +L +A +    +V + L             D +G T L++AV   + +I   LI 
Sbjct: 4   YEVGALLEAANQRDTKKVKEILQDTTYQVDE---VDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 125 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 184
               +  L+++  ++    A  +GRT+I+  +L     D+N  N+ G + L  A + G+ 
Sbjct: 61  RGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119

Query: 185 ELFSLLKEAGAA 196
           +   LL E G  
Sbjct: 120 DNVKLLLEDGRE 131

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 73.3 bits (181), Expect = 3e-15
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 2/97 (2%)

Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
             +    L  A +   + +   L      V    D +GNT L+IA+     +I + L+  
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALID- 60

Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA 196
            G D+N  N   +SP   A   G TE+ + + +    
Sbjct: 61  RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATP 97

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 60.5 bits (148), Expect = 6e-11
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 37  TALHTAAA-----QGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK 91
           TAL  A       Q + D+V  L+E  ++   I  N+G+T +  A + G+ E+ K L   
Sbjct: 142 TALIEAVGLREGNQLYQDIVKLLMENGADQ-SIKDNSGRTAMDYANQKGYTEISKILAQY 200

Query: 92  D 92
           +
Sbjct: 201 N 201

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  119 bits (300), Expect = 5e-32
 Identities = 25/185 (13%), Positives = 57/185 (30%), Gaps = 29/185 (15%)

Query: 37  TALHTAAAQGHIDVVNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--D 92
             +  AA  G  +    L E   +   + +  N    VL +       ++   L++K  D
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67

Query: 93  PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL----------EDNKGNTALH 142
             +     K+G T      +G   DI          + K+                  + 
Sbjct: 68  IKS---RTKEGTTLFFPLFQGGGNDIT-----GTTELCKIFLEKGADITALYKPYKIVVF 119

Query: 143 IAIKKG------RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA- 195
             I            + + + S  G+ +   +K G + L+  ++        ++++    
Sbjct: 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKK 179

Query: 196 AHSKD 200
            + K+
Sbjct: 180 YNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 75.1 bits (185), Expect = 5e-16
 Identities = 20/142 (14%), Positives = 38/142 (26%), Gaps = 15/142 (10%)

Query: 68  NGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP 125
           +    + +AA +G  E    L  K  +              L          I + LI  
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 126 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE-----GIDVNSLNKAGESPLDVAEK 180
              + K    +G T      + G   I       +     G D+ +L K  +  +     
Sbjct: 65  GADI-KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIF 123

Query: 181 LGNTELFS-------LLKEAGA 195
               +          +  ++G 
Sbjct: 124 NYFVDENEMIPLYKLIFSQSGL 145

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 9/103 (8%)

Query: 101 KKGQTALHMAVKGQNEDIVLELIRP--DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
                 +  A      +  LEL     +     L+ N     L     + R +I   L++
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 159 IEGIDVNSLNKAGESPLDVA------EKLGNTELFSLLKEAGA 195
            +G D+ S  K G +           +  G TEL  +  E GA
Sbjct: 64  -KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA 105

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 6/62 (9%)

Query: 36  STALHTAAAQGHIDVVNFL----LEIDSNLAKI-ARNN-GKTVLHSAARMGHLEVVKALV 89
              +        +D    +    L    +  ++  ++  G T L    R      +K + 
Sbjct: 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME 174

Query: 90  SK 91
             
Sbjct: 175 DY 176

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  119 bits (300), Expect = 2e-31
 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 9/160 (5%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK-DPST 95
                    GH         I +++     +  +T   +AAR    + +  L+   D   
Sbjct: 17  MEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQALSQLLEDRDVDA 72

Query: 96  GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 155
               D+ G+TAL       ++  V  L      +   +   G TALH+A    R ++V  
Sbjct: 73  ---VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129

Query: 156 LLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           L+   G D+   ++ G + L++A ++  T       + G 
Sbjct: 130 LVE-LGADIEVEDERGLTALELAREILKTTPKGNPMQFGR 168

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  113 bits (286), Expect = 3e-29
 Identities = 39/187 (20%), Positives = 66/187 (35%), Gaps = 27/187 (14%)

Query: 37  TALHTAAAQGHIDVVNFLLE-IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPST 95
           T   TAA +     ++ LLE  D +       NG+T L   A +G  + V+ L       
Sbjct: 47  TPWWTAARKADEQALSQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADL 103

Query: 96  GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 155
             R  + G TALHMA      ++V  L+     + ++ED +G TAL +A +  +T     
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGN 162

Query: 156 LLS---------------------IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 194
            +                       E  ++      G+    +       +   +     
Sbjct: 163 PMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHV 222

Query: 195 AA-HSKD 200
           A   +KD
Sbjct: 223 AEDVAKD 229

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  101 bits (254), Expect = 6e-25
 Identities = 35/165 (21%), Positives = 50/165 (30%), Gaps = 29/165 (17%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
           TAL   A  G    V  L E  ++L       G T LH AA     EVV+ALV    D  
Sbjct: 79  TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 138

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELI---------------------RPDPSVLKLE 133
                D++G TAL +A +          +                       +   +  +
Sbjct: 139 ---VEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEK 195

Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 178
             KG    ++   K               +     K  E  L+ A
Sbjct: 196 RGKGKDVEYLVRWKDGGDCEWVKGV-HVAEDV--AKDYEDGLEYA 237

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 92.7 bits (231), Expect = 1e-21
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 10/142 (7%)

Query: 56  EIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN 115
           E++  +       G        + GH                    + +T    A +  +
Sbjct: 2   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI----AADVVSEYETPWWTAARKAD 57

Query: 116 EDIVLELIR-PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN-KAGES 173
           E  + +L+   D       D  G TAL      G  + VR L    G D++  + + G +
Sbjct: 58  EQALSQLLEDRDVDA---VDENGRTALLFVAGLGSDKCVRLLAE-AGADLDHRDMRGGLT 113

Query: 174 PLDVAEKLGNTELFSLLKEAGA 195
            L +A      E+   L E GA
Sbjct: 114 ALHMAAGYVRPEVVEALVELGA 135

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 73.0 bits (180), Expect = 7e-15
 Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 29/136 (21%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV----------- 85
           TALH AA     +VV  L+E+ +++ ++    G T L  A  +                 
Sbjct: 113 TALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKTTPKGNPMQFGRRIG 171

Query: 86  -KALVSKDPSTGFRT---------DKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLE 133
            + +++      F             KG+   ++       D          +      +
Sbjct: 172 LEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVA---K 228

Query: 134 DNKGNTALHIAIKKGR 149
           D +    L  A+ +  
Sbjct: 229 DYE--DGLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 13/88 (14%), Positives = 22/88 (25%), Gaps = 24/88 (27%)

Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
           G+    +  +                       +G     I  K G +        I   
Sbjct: 1   GEVNKIIGSRT--------------------AGEGAMEYLIEWKDGHSPSWVPSSYI-AA 39

Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLL 190
           DV       E+P   A +  + +  S L
Sbjct: 40  DV---VSEYETPWWTAARKADEQALSQL 64

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  119 bits (302), Expect = 3e-31
 Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 10/161 (6%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
           +A + A A  ++ +V  LL   +  A       +  LH AA +   ++VK L+    D S
Sbjct: 33  SASYYAIADNNVRLVCTLL---NAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDS 89

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
                D KG TAL+ AV   N   V   ++ +  ++        T+ + A+      IV 
Sbjct: 90  Q---FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS 146

Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
             LS E            S + +  K G+ ++  LL +   
Sbjct: 147 YFLS-EIPSTFD-LAILLSCIHITIKNGHVDMMILLLDYMT 185

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  116 bits (294), Expect = 4e-30
 Identities = 30/170 (17%), Positives = 67/170 (39%), Gaps = 13/170 (7%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
           TAL+ A   G++  V   ++ +  L    +   KT  + A  +  + +V   +S+ PST 
Sbjct: 97  TALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST- 155

Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNT-ALHIAIKKGRTQIVRC 155
                   + +H+ +K  + D+++ L+    S     ++      + +AI     ++++ 
Sbjct: 156 -FDLAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQA 213

Query: 156 LLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKDHGKP 204
           L     I++        S       L + E+  ++ E      S  + K 
Sbjct: 214 LFK-YDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKD 255

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  109 bits (276), Expect = 1e-27
 Identities = 17/149 (11%), Positives = 57/149 (38%), Gaps = 17/149 (11%)

Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DP 93
            T+ + A     + +V++ L    +          + +H   + GH++++  L+      
Sbjct: 130 KTSFYHAVMLNDVSIVSYFLSEIPS--TFDLAILLSCIHITIKNGHVDMMILLLDYMTST 187

Query: 94  STGFRTDKKGQT-ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 152
           +T    +       + +A+  ++ +++  L + D ++         +A    +     +I
Sbjct: 188 NT---NNSLLFIPDIKLAIDNKDIEMLQALFKYDINI--------YSANLENVLLDDAEI 236

Query: 153 VRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
            + ++  + ++  S +   +  +    KL
Sbjct: 237 AKMIIE-KHVEYKSDSYTKDLDIVKNNKL 264

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  105 bits (264), Expect = 7e-26
 Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 10/161 (6%)

Query: 42  AAAQGHIDVVNFLLE-IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTD 100
                    +   L   D+     A  +G +  + A    ++ +V  L++          
Sbjct: 6   RINTWKSKQLKSFLSSKDTF---KADVHGHSASYYAIADNNVRLVCTLLNAGALK---NL 59

Query: 101 KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE 160
            + +  LH A   ++  IV  L+          D+KGNTAL+ A+  G  Q V+  +  +
Sbjct: 60  LENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVK-K 117

Query: 161 GIDVNSLNKAG-ESPLDVAEKLGNTELFSLLKEAGAAHSKD 200
              +    K G ++    A  L +  + S       +    
Sbjct: 118 NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL 158

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 84.9 bits (211), Expect = 1e-18
 Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 13/134 (9%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKT-VLHSAARMGHLEVVKALVSKDPST 95
           + +H     GH+D++  LL+  ++      +      +  A     +E+++AL   D + 
Sbjct: 163 SCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN- 220

Query: 96  GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 155
                    +A    V   + +I   +I       K +    +  +    K    +I+  
Sbjct: 221 -------IYSANLENVLLDDAEIAKMIIEKHVEY-KSDSYTKDLDIVKNNKL--DEIISK 270

Query: 156 LLSIEGIDVNSLNK 169
              +  + VN + K
Sbjct: 271 NKELRLMYVNCVKK 284

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  117 bits (296), Expect = 6e-31
 Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 15/172 (8%)

Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSK-- 91
              L  AA  G ++VV   +     +         G T LH+A    +  +V  L++   
Sbjct: 22  LVLLLDAALTGELEVVQQAV---KEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGA 78

Query: 92  DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA--IKKGR 149
           + +     D  G T LH A    +  I + L++   ++     + G TA       ++G 
Sbjct: 79  NVN---SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGY 135

Query: 150 TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHSKD 200
                 L  +    +  +N      L         EL S  +        +D
Sbjct: 136 ADCATYLADV-EQSMGLMNSGAVYALWDYSAEFGDEL-SFREGESVTVLRRD 185

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  108 bits (272), Expect = 2e-27
 Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 6/151 (3%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
           TALH A    +  +V+FL+   +N+     ++G T LH AA      +  ALV    +  
Sbjct: 56  TALHNAICGANYSIVDFLITAGANVNS-PDSHGWTPLHCAASCNDTVICMALVQHGAAIF 114

Query: 97  FRTDKKGQTALHMAVKGQN--EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
             T   G TA       +    D    L   + S+  L ++    AL     +     + 
Sbjct: 115 ATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSAEF-GDELS 172

Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 185
                E + V   +   E+    A   G   
Sbjct: 173 FREG-ESVTVLRRDGPEETDWWWAALHGQEG 202

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  103 bits (260), Expect = 6e-26
 Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 12/152 (7%)

Query: 51  VNFLLE--IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTA 106
           +  +L        A+ AR N   +L  AA  G LEVV+  V +  DPS     +++G TA
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP---NEEGITA 57

Query: 107 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNS 166
           LH A+ G N  IV  LI    +V    D+ G T LH A     T I   L+   G  + +
Sbjct: 58  LHNAICGANYSIVDFLITAGANVNS-PDSHGWTPLHCAASCNDTVICMALVQ-HGAAIFA 115

Query: 167 LN-KAGESPLDVAEKL--GNTELFSLLKEAGA 195
                G +  +  +    G  +  + L +   
Sbjct: 116 TTLSDGATAFEKCDPYREGYADCATYLADVEQ 147

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 91.9 bits (229), Expect = 1e-21
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 5/119 (4%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARM--GHLEVVKALVSKDPS 94
           T LH AA+     +   L++  + +     ++G T          G+ +    L   + S
Sbjct: 89  TPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS 148

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
            G   +     AL         D +        +VL+  D    T    A   G+   V
Sbjct: 149 MG-LMNSGAVYALWDYSAE-FGDELSFREGESVTVLR-RDGPEETDWWWAALHGQEGYV 204

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  118 bits (296), Expect = 1e-29
 Identities = 44/209 (21%), Positives = 74/209 (35%), Gaps = 38/209 (18%)

Query: 16  VLKELLGEFPNLV-MTTDLSCSTALHTAAAQ-GHIDVVNFLLEIDSNLAK---------- 63
           VL  L    P             A   AA   GH +V+NFLL+    LA           
Sbjct: 178 VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGE 237

Query: 64  -------IARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE 116
                      N    +H A ++ + + V  LV+K          +G   L   ++ +N+
Sbjct: 238 KYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSEC------LQGFYMLRNLIR-RND 290

Query: 117 DIVLELIRPDPSVLKLE--------DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN 168
           +++L+ IR   S+  ++            N  L +A++ G       LLSI  +    L 
Sbjct: 291 EVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSV----LA 346

Query: 169 KAGESPLDVAEKLGNTELFSLLKEAGAAH 197
               +   + E  G  +L ++  E    H
Sbjct: 347 LTKANNYYINETGGRLDLRAVALEHHHHH 375

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 93.1 bits (231), Expect = 6e-21
 Identities = 41/250 (16%), Positives = 74/250 (29%), Gaps = 56/250 (22%)

Query: 1   MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 60
           +  +  +   S  +  L  LL     + +    +   A   AA  GH+ V+N L E+   
Sbjct: 95  ICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENY-QAFRLAAENGHLHVLNRLCELAPT 153

Query: 61  L-AKIARNNGKTVLHSAARMGHLEVVKALVSKDPS-TGFRTDKKGQTALHMAVKGQN-ED 117
               + +         AA  GHL V+  L    P+        +   A   A  G+   +
Sbjct: 154 EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 213

Query: 118 IVLELIRPDPSVLKLEDN---------------------KGNTALHIAIKKGRTQIV--- 153
           ++  L+     +   E +                     + + A  ++   G   +V   
Sbjct: 214 VINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKS 273

Query: 154 ------------------------RCLLSI----EGIDVNSLNKAGESPLDVAEKLGNTE 185
                                   R LLSI          ++       L +A +LGN  
Sbjct: 274 ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG 333

Query: 186 LFSLLKEAGA 195
             +LL    +
Sbjct: 334 ACALLLSIPS 343

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 76.5 bits (188), Expect = 2e-15
 Identities = 20/165 (12%), Positives = 49/165 (29%), Gaps = 8/165 (4%)

Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPST 95
                      H +     L  D++   I       V         L+ +  L++ D   
Sbjct: 62  QVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV 121

Query: 96  GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV-LKLEDNKGNTALHIAIKKGRTQIVR 154
                 +   A  +A +  +  ++  L    P+  + +   +   A  +A + G   ++ 
Sbjct: 122 K-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLN 180

Query: 155 CLLSI----EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            L  +        + + N    +    A   G+  + + L +   
Sbjct: 181 RLCELAPTEATAMIQAEN--YYAFRWAAVGRGHHNVINFLLDCPV 223

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  109 bits (275), Expect = 6e-29
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 7/131 (5%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
           + G+T+LH A+  G +  V+ L+    DP+     D  G T LH A    +  +V  L++
Sbjct: 8   HRGETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVVELLLQ 64

Query: 125 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 184
               V      + ++ LH A K G   IV+ LLS  G   N++N  G  P+D  +     
Sbjct: 65  HKALV-NTTGYQNDSPLHDAAKNGHVDIVKLLLS-YGASRNAVNIFGLRPVDYTDDESMK 122

Query: 185 ELFSLLKEAGA 195
            L  L ++  +
Sbjct: 123 SLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  105 bits (264), Expect = 2e-27
 Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 11/127 (8%)

Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKI-ARNN-GKTVLHSAARMGHLEVVKALVSK-- 91
            T LH A+ +G I  V +LL    N +    +++ G T LH A   GHL+VV+ L+    
Sbjct: 11  ETLLHIASIKGDIPSVEYLL---QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA 67

Query: 92  DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ 151
             +T   T  +  + LH A K  + DIV  L+    S     +  G   +     +    
Sbjct: 68  LVNT---TGYQNDSPLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKS 123

Query: 152 IVRCLLS 158
           ++     
Sbjct: 124 LLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 74.0 bits (183), Expect = 4e-16
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 99  TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
           T+ +G+T LH+A    +   V  L++       ++D+ G T LH A   G  ++V  LL 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQ 64

Query: 159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
                VN+     +SPL  A K G+ ++  LL   GA
Sbjct: 65  -HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  109 bits (275), Expect = 1e-28
 Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 18/153 (11%)

Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DP 93
           +  L TAAA+G ++ V  LLE  +N      + G+  +     MG   V + L+    +P
Sbjct: 13  ADWLATAAARGRVEEVRALLEAGANPNA-PNSYGRRPIQVMM-MGSARVAELLLLHGAEP 70

Query: 94  STGFRTDKKGQT-ALHMAVKGQNEDIVLELIRP--DPSVLKLEDNKGNTALHIAIKKGRT 150
           +     D    T  +H A +    D ++ L R      V    D  G   + +A + G  
Sbjct: 71  NC---ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV---RDAWGRLPVDLAEELGHR 124

Query: 151 QIVRCLLSIEGIDVNSLNK----AGESPLDVAE 179
            + R L +         N     A E P D+ +
Sbjct: 125 DVARYLRA-AAGGTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  105 bits (265), Expect = 3e-27
 Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 16/148 (10%)

Query: 62  AKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIV 119
           A  +       L +AA  G +E V+AL+    +P+     +  G+  + + + G +  + 
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNA---PNSYGRRPIQVMMMG-SARVA 60

Query: 120 LELIRP--DPSVLKLEDNKGNT-ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLD 176
             L+    +P+     D    T  +H A ++G    +  L    G  ++  +  G  P+D
Sbjct: 61  ELLLLHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVRDAWGRLPVD 116

Query: 177 VAEKLGNTELFSLLKEAGA---AHSKDH 201
           +AE+LG+ ++   L+ A       +   
Sbjct: 117 LAEELGHRDVARYLRAAAGGTRGSNHAR 144

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  108 bits (272), Expect = 1e-28
 Identities = 49/124 (39%), Positives = 70/124 (56%), Gaps = 7/124 (5%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
           T LH AA  GH++VV  LLE  +++      NG+T LH AAR GHLEVVK L+    D +
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
                DK G+T LH+A +  + ++V  L+     V   +D  G T LH+A + G  ++V+
Sbjct: 63  ---AKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVK 118

Query: 155 CLLS 158
            LL 
Sbjct: 119 LLLE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  103 bits (260), Expect = 7e-27
 Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 13/133 (9%)

Query: 68  NGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP 125
           NG+T LH AAR GHLEVVK L+    D +     DK G+T LH+A +  + ++V  L+  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVVKLLL-- 55

Query: 126 DPSV---LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 182
                  +  +D  G T LH+A + G  ++V+ LL   G DVN+ +K G +PL +A + G
Sbjct: 56  --EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNG 112

Query: 183 NTELFSLLKEAGA 195
           + E+  LL EAGA
Sbjct: 113 HLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 68.1 bits (168), Expect = 3e-14
 Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK 91
           T LH AA  GH++VV  LLE  +++      NG+T LH AAR GHLEVVK L+  
Sbjct: 70  TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  107 bits (268), Expect = 4e-27
 Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 8/161 (4%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
              + A +    ++   +L   S        + +T LH A   GH E+V+ L+      +
Sbjct: 9   MICNLAYSGKLDELKERILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
                D  G + LH+A     ++IV  L+     V    +  G T LH A  K R +I  
Sbjct: 68  D---KDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAV 123

Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            LL   G + ++ +    + +  A   GN ++  +L    A
Sbjct: 124 MLLE-GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  104 bits (260), Expect = 5e-26
 Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 7/182 (3%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
           TALH A + GH ++V FLL++   +     + G + LH AA  G  E+VKAL+ K     
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100

Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
              ++ G T LH A      +I + L+    +    +D+   TA+H A  KG  ++V  L
Sbjct: 101 -AVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHIL 158

Query: 157 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA---AHSKDHGKPPSATKQLKQ 213
           L       N  +  G +PL +A      E    L   GA     +K+   P    K    
Sbjct: 159 LF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLG 217

Query: 214 TV 215
            +
Sbjct: 218 LI 219

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 89.5 bits (222), Expect = 9e-21
 Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 7/131 (5%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
            +   + + A      E+ + +++     +   RTD+  +TALH A    + +IV  L++
Sbjct: 5   VSNIMICNLAYSGKLDELKERILADKSLAT---RTDQDSRTALHWACSAGHTEIVEFLLQ 61

Query: 125 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 184
               V   +D+ G + LHIA   G  +IV+ LL  +G  VN++N+ G +PL  A      
Sbjct: 62  LGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLV-KGAHVNAVNQNGCTPLHYAASKNRH 119

Query: 185 ELFSLLKEAGA 195
           E+  +L E GA
Sbjct: 120 EIAVMLLEGGA 130

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 76.4 bits (188), Expect = 4e-16
 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 6/138 (4%)

Query: 28  VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKA 87
           V   + +  T LH AA++   ++   LLE  +N      +   T +H AA  G+L++V  
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHI 157

Query: 88  LVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK 147
           L+    ST  + D +G T LH+A   +  +    L+    S+  +E+ +  T L +A  K
Sbjct: 158 LLFYKASTNIQ-DTEGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVA--K 213

Query: 148 GRTQIVRCLLSIEGIDVN 165
           G   ++   L+ EG + +
Sbjct: 214 GGLGLILKRLA-EGEEAS 230

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  103 bits (260), Expect = 8e-27
 Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 13/134 (9%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
            +    L +AA  G +E V+ L+    DP+     ++ G+  + + + G +  +   L+ 
Sbjct: 10  GSSDAGLATAAARGQVETVRQLLEAGADPN---ALNRFGRRPIQVMMMG-SAQVAELLLL 65

Query: 125 --PDPSVLKLEDNKGNT-ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKL 181
              +P+     D    T  +H A ++G    +  L    G  ++  +  G  P+D+AE+ 
Sbjct: 66  HGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQ 121

Query: 182 GNTELFSLLKEAGA 195
           G+ ++   L  A  
Sbjct: 122 GHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  102 bits (258), Expect = 1e-26
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 9/125 (7%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
             L TAAA+G ++ V  LLE  ++        G+  +      G  +V + L+    +P+
Sbjct: 14  AGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN 71

Query: 95  TGFRTDKKGQT-ALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
                D    T  +H A +    D ++ L R    +  + D  G   + +A ++G   I 
Sbjct: 72  C---ADPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIA 127

Query: 154 RCLLS 158
           R L +
Sbjct: 128 RYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 63.6 bits (156), Expect = 1e-12
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 4/97 (4%)

Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
                  L  A      + V +L+          +  G   + + +  G  Q+   LL  
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMM-MGSAQVAELLLL- 65

Query: 160 EGIDVNSLNKAGE-SPLDVAEKLGNTELFSLLKEAGA 195
            G + N  + A    P+  A + G  +   +L  AGA
Sbjct: 66  HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA 102

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  104 bits (262), Expect = 5e-26
 Identities = 49/236 (20%), Positives = 74/236 (31%), Gaps = 48/236 (20%)

Query: 13  VILVLKELLGEFPNLVMTTDLSCSTALHTAAA---QGHIDVVNFLLEIDSNLAKIAR--- 66
           ++  L+       +   T   +  T L  A      G    +  LL+ID +         
Sbjct: 21  LLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80

Query: 67  -------NNGKTVLHSAARMGHLEVVKALVSK------------DPSTGFRTDKKGQTAL 107
                    G + LH A     L+ VK LV                         G+  L
Sbjct: 81  AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPL 140

Query: 108 HMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALH----------------IAIKKGR 149
            +A   +  D+V  L+     P+ L+  D+ GNT LH                I +  G 
Sbjct: 141 SLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGL 200

Query: 150 TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA----AHSKDH 201
            Q+   L           N  G +PL +A K G  E+F  + +       AH   H
Sbjct: 201 LQMGARLCP-TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 92.9 bits (231), Expect = 1e-21
 Identities = 32/189 (16%), Positives = 60/189 (31%), Gaps = 39/189 (20%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIAR-------NNGKTVLHSAA---RMGHLEVVK 86
             L +  ++G  + +  LLE     +K          + GKT L  A    + G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 87  ALVSKDPSTGFRT----------DKKGQTALHMAVKGQNEDIVLELIR------------ 124
            L+  D  +G               +G +ALH+A++ ++   V  L+             
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 125 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS--IEGIDVNSLNKAGESPLDVA---- 178
                       G   L +A    +  +V  LL    +   + + +  G + L       
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIA 183

Query: 179 -EKLGNTEL 186
                N+ L
Sbjct: 184 DNSPENSAL 192

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  100 bits (252), Expect = 7e-26
 Identities = 29/153 (18%), Positives = 45/153 (29%), Gaps = 39/153 (25%)

Query: 35  CSTALHTAAAQGHIDVVNFLLEIDSNL-AKIARNNGKTVLHSAARMGHLEVVKALVSKDP 93
           C      A   G +D V   +    ++   +    G+  LH AA  G LE+++ L+ K  
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTL--EGGRKPLHYAADCGQLEILEFLLLKG- 63

Query: 94  STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV 153
                 D                                 D    T L  A+ +G    V
Sbjct: 64  -----ADINAP-----------------------------DKHHITPLLSAVYEGHVSCV 89

Query: 154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL 186
           + LLS  G D       G +  +  +      L
Sbjct: 90  KLLLSK-GADKTVKGPDGLTAFEATDNQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 82.8 bits (206), Expect = 2e-19
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
             LH AA  G ++++ FLL   +++      +  T L SA   GH+  VK L+SK  D +
Sbjct: 42  KPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT 100

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIV 119
                   G TA         + ++
Sbjct: 101 VK---GPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 56.6 bits (138), Expect = 3e-10
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
            +  +     A+K G    V+  ++ +G DVN   + G  PL  A   G  E+   L   
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 194 GA 195
           GA
Sbjct: 63  GA 64

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  100 bits (251), Expect = 8e-26
 Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 7/116 (6%)

Query: 62  AKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIV 119
                 +G T LH+AA+ GH E VK L+SK  D +      K G T LH+A K  + +IV
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN---ARSKDGNTPLHLAAKNGHAEIV 58

Query: 120 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL 175
             L+     V       GNT  H+A K G  +IV+ L + +G DVN+ +       
Sbjct: 59  KLLLAKGADV-NARSKDGNTPEHLAKKNGHHEIVKLLDA-KGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 57.4 bits (140), Expect = 1e-10
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 131 KLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL 190
                 GNT LH A K G  + V+ LLS  G DVN+ +K G +PL +A K G+ E+  LL
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLL 61

Query: 191 KEAGA 195
              GA
Sbjct: 62  LAKGA 66

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 99.0 bits (248), Expect = 3e-25
 Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 11/127 (8%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKI-ARNN-GKTVLHSAARMGHLEVVKALVSK--D 92
             L  AA  G  D V  L+   +N A + A++  G T L+ A   GHLE+V+ L+    D
Sbjct: 16  KKLLEAARAGQDDEVRILM---ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72

Query: 93  PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI 152
            +     D  G T LH+A    + +I   L++    V   +D  G TA  I+I  G   +
Sbjct: 73  VNA---VDAIGFTPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDL 128

Query: 153 VRCLLSI 159
              L  +
Sbjct: 129 AEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 93.2 bits (233), Expect = 4e-23
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
           ++    L  AAR G  + V+ L++   D +     D+ G T L++A    + +IV  L++
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNA---KDEYGLTPLYLATAHGHLEIVEVLLK 68

Query: 125 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 184
               V    D  G T LH+A   G  +I   LL   G DVN+ +K G++  D++   GN 
Sbjct: 69  NGADVNA-VDAIGFTPLHLAAFIGHLEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGNE 126

Query: 185 ELFSLL 190
           +L  +L
Sbjct: 127 DLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 62.0 bits (152), Expect = 5e-12
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSKD 92
           T LH AA  GH+++   LL    + A +      GKT    +   G+ ++ + L   +
Sbjct: 82  TPLHLAAFIGHLEIAEVLL---KHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 52.0 bits (126), Expect = 2e-08
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFS 188
                 +     L  A + G+   VR L++  G DVN+ ++ G +PL +A   G+ E+  
Sbjct: 6   HHHHHGSDLGKKLLEAARAGQDDEVRILMA-NGADVNAKDEYGLTPLYLATAHGHLEIVE 64

Query: 189 LLKEAGA 195
           +L + GA
Sbjct: 65  VLLKNGA 71

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  102 bits (256), Expect = 5e-25
 Identities = 46/204 (22%), Positives = 66/204 (32%), Gaps = 45/204 (22%)

Query: 37  TALHTAAAQ---GHIDVVNFLLEIDSNLAKIAR----------NNGKTVLHSAARMGHLE 83
           T L  A      G  D +  LL+I      +              G+T LH A       
Sbjct: 48  TCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKH 107

Query: 84  VVKALVSK-------------DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--PDPS 128
            V+ LV K              P         G+  L +A       IV  L       +
Sbjct: 108 YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQA 167

Query: 129 VLKLEDNKGNTALHIAI---------KKGRTQIVRCLLSIEGIDVNS-------LNKAGE 172
            L+ +D++GNT LH  +          K  T++   LL  +   +         LN  G 
Sbjct: 168 DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLNNDGL 226

Query: 173 SPLDVAEKLGNTELFSLLKEAGAA 196
           SPL +A K G   +F  +     A
Sbjct: 227 SPLMMAAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 95.6 bits (238), Expect = 1e-22
 Identities = 36/165 (21%), Positives = 56/165 (33%), Gaps = 36/165 (21%)

Query: 37  TALHTAAAQGHIDVVNFLLE-------------IDSNLAKIARNNGKTVLHSAARMGHLE 83
           TALH A  +     V  L+E                         G+  L  AA      
Sbjct: 95  TALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH 154

Query: 84  VVKALVSK-----DPSTGFRTDKKGQTALHMAVKGQNE------------DIVLEL---I 123
           +V  L        D     R D +G T LH  V   +             D++L     +
Sbjct: 155 IVHYLTENGHKQADLR---RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL 211

Query: 124 RPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN 168
            PD ++  L +N G + L +A K G+  I + ++  E  D  + +
Sbjct: 212 FPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 75.2 bits (185), Expect = 2e-15
 Identities = 37/185 (20%), Positives = 59/185 (31%), Gaps = 49/185 (26%)

Query: 37  TALHTAAAQG----HIDVVNFLLEIDSNL---AKIARNNGKTVLHSAA---RMGHLEVVK 86
             L    ++G       +++FLL     L        + GKT L  A      G  + + 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 87  ALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK 146
            L+                        +    + E I    S  +    +G TALHIAI+
Sbjct: 67  ILLDI---------------------AEKTGNMREFIN---SPFRDVYYRGQTALHIAIE 102

Query: 147 KGRTQIVRCLLSIEGIDVNSLNKA--------------GESPLDVAEKLGNTELFSLLKE 192
           +     V  L+  +G DV++  +               GE PL +A       +   L E
Sbjct: 103 RRCKHYVELLVE-KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161

Query: 193 AGAAH 197
            G   
Sbjct: 162 NGHKQ 166

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 99.5 bits (248), Expect = 6e-24
 Identities = 34/181 (18%), Positives = 57/181 (31%), Gaps = 44/181 (24%)

Query: 36  STALHTAAAQGHIDVVNFLLE-------------IDSNLAKIARNNGKTVLHSAARMGHL 82
            TALH A  + ++ +V  L+E                   +     G+  L  AA    L
Sbjct: 102 QTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161

Query: 83  EVVKALVSK-----DPSTGFRTDKKGQTALHMAVKGQNEDIVLEL--------------- 122
            +VK L+       D S     D  G T LH  V+  +  +                   
Sbjct: 162 AIVKFLLQNSWQPADIS---ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK 218

Query: 123 IRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG 182
           + P   + ++ + KG T L +A   G+  ++  +L    I               A    
Sbjct: 219 LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ-REIH-------EPECRHAAAHHH 270

Query: 183 N 183
           +
Sbjct: 271 H 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 97.9 bits (244), Expect = 2e-23
 Identities = 37/203 (18%), Positives = 71/203 (34%), Gaps = 44/203 (21%)

Query: 37  TALHTAAAQGHIDVVNFLLEI-DSNLAKIA------RNNGKTVLHSA---ARMGHLEVVK 86
            ++  A AQ +   +  LL     +  ++          GKT L  A      G  + + 
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 87  ALVSKDPSTGFRT----------DKKGQTALHMAVKGQNEDIVLELIR------------ 124
            L+     T                KGQTALH+A++ +N  +V  L+             
Sbjct: 75  LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGD 134

Query: 125 -PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS--IEGIDVNSLNKAGESPLDVAEKL 181
               +  +     G   L +A    +  IV+ LL    +  D+++ +  G + L    ++
Sbjct: 135 FFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEV 194

Query: 182 GN---------TELFSLLKEAGA 195
            +         T +++ +   GA
Sbjct: 195 ADNTVDNTKFVTSMYNEILILGA 217

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 74.0 bits (182), Expect = 4e-15
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 35/164 (21%)

Query: 66  RNNGKTVLHSAARMGHLEVVKALVSKDPSTG-------FRTDKKGQTALHMAV---KGQN 115
           R   +  +  A    + + +++L+     +        F+  + G+T L  A+       
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 116 EDIVLELIRPDPSV----------LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN 165
            D +  L+                      KG TALHIAI++    +V  L+   G DV 
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE-NGADVQ 128

Query: 166 SLNK--------------AGESPLDVAEKLGNTELFSLLKEAGA 195
           +                  GE PL +A       +   L +   
Sbjct: 129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW 172

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 67.5 bits (165), Expect = 7e-13
 Identities = 16/96 (16%), Positives = 24/96 (25%), Gaps = 23/96 (23%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDS---------------NLAKIARNNGKTVLHSAARMGH 81
           T LH         V N                       L +I    G T L  AA  G 
Sbjct: 186 TVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245

Query: 82  LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED 117
           + V+  ++ +        +       H A    +  
Sbjct: 246 IGVLAYILQR--------EIHEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 2   DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL 61
           D   F+      IL+L   L     L   T+    T L  AA+ G I V+ ++L+ +   
Sbjct: 200 DNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE--- 256

Query: 62  AKIARNNGKTVLHSAARMGH 81
                 +     H+AA   H
Sbjct: 257 -----IHEPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 52.5 bits (126), Expect = 7e-08
 Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 21/124 (16%)

Query: 100 DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL-------EDNKGNTALHIA---IKKGR 149
               + ++  AV   N   +  L+       K        +   G T L  A   +  G+
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 150 TQIVRCLLSI----------EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA-AHS 198
              +  LL +                     G++ L +A +  N  L +LL E GA   +
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA 129

Query: 199 KDHG 202
             +G
Sbjct: 130 AANG 133

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 94.3 bits (234), Expect = 1e-21
 Identities = 37/209 (17%), Positives = 75/209 (35%), Gaps = 20/209 (9%)

Query: 5   HFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKI 64
             +   S +  V         NL +  D   +T LH   +  ++++V  L++  SN   +
Sbjct: 101 QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR--L 158

Query: 65  ARNN-GKTVLHSAARMGH---LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE---- 116
             +N G++ L  A +  +       +AL+          D   +T LH  +         
Sbjct: 159 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCS 218

Query: 117 -------DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE---GIDVNS 166
                  DI++  I    +           +        R   +   L ++      +N+
Sbjct: 219 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA 278

Query: 167 LNKAGESPLDVAEKLGNTELFSLLKEAGA 195
            +  G++ L++A +LGN  +   L + GA
Sbjct: 279 QDSNGDTCLNIAARLGNISIVDALLDYGA 307

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 90.1 bits (223), Expect = 3e-20
 Identities = 32/159 (20%), Positives = 62/159 (38%), Gaps = 18/159 (11%)

Query: 37  TALHTAAAQGHI-DVVNFLLEIDSNLAKIAR--NNGKTVLHSAARM-----------GHL 82
           + L  A    +  D   F   +D     +    +  +T+LH                 +L
Sbjct: 166 SCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYL 225

Query: 83  EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL---EDNKGNT 139
           +++   + K  +   ++    + +      G+ +D +LE +     +  +   +D+ G+T
Sbjct: 226 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 285

Query: 140 ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 178
            L+IA + G   IV  LL   G D    NK+G  P+D  
Sbjct: 286 CLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 75.8 bits (186), Expect = 2e-15
 Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 6/141 (4%)

Query: 66  RNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP 125
           +   +  L         E+  +L +   +         Q   H++     +++       
Sbjct: 60  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 119

Query: 126 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN-- 183
             ++    D  GNT LH        ++V+ L+   G +    +  GES L  A K  N  
Sbjct: 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDNMGESCLVKAVKSVNNY 178

Query: 184 -TELFSLLKEAGAA--HSKDH 201
            +  F  L +        +D 
Sbjct: 179 DSGTFEALLDYLYPCLILEDS 199

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 71.2 bits (174), Expect = 7e-14
 Identities = 27/178 (15%), Positives = 51/178 (28%), Gaps = 8/178 (4%)

Query: 32  DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK 91
            +     L         ++   L    SN      ++ +   H +      EV  A  + 
Sbjct: 60  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 119

Query: 92  DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG--- 148
             +     D+ G T LH      N ++V  L++   + L   DN G + L  A+K     
Sbjct: 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG-DNMGESCLVKAVKSVNNY 178

Query: 149 RTQIVRCLLSIEGIDVNSLNKAGESPL----DVAEKLGNTELFSLLKEAGAAHSKDHG 202
            +     LL      +   +    + L      +   G +       +          
Sbjct: 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ 236

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 64.3 bits (156), Expect = 1e-11
 Identities = 21/144 (14%), Positives = 42/144 (29%), Gaps = 15/144 (10%)

Query: 16  VLKELLGEFPNLVMTTDLSCSTALHTAA-----------AQGHIDVVNFLLEIDSNLAKI 64
             + LL      ++  D    T LH              A+ ++D++   +    N    
Sbjct: 182 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ 241

Query: 65  ARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR---TDKKGQTALHMAVKGQNEDIVLE 121
           +  N K    +       + +   +             D  G T L++A +  N  IV  
Sbjct: 242 SGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA 301

Query: 122 LIRPDPSVLKLEDNKGNTALHIAI 145
           L+        + +  G   +    
Sbjct: 302 LLDYGADP-FIANKSGLRPVDFGA 324

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 86.3 bits (215), Expect = 5e-21
 Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 6/89 (6%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
           T LH AA  GH++VV  LLE  +++      NG+T LH AAR GHLEVVK L+    D +
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELI 123
                DK G+T LH+A +  + ++V  L+
Sbjct: 63  AK---DKNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 82.0 bits (204), Expect = 1e-19
 Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 12/96 (12%)

Query: 68  NGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP 125
           NG+T LH AAR GHLEVVK L+    D +     DK G+T LH+A +  + ++V  L+  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNA---KDKNGRTPLHLAARNGHLEVVKLLL-- 55

Query: 126 DPSV---LKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
                  +  +D  G T LH+A + G  ++V+ LL 
Sbjct: 56  --EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 69.3 bits (171), Expect = 5e-15
 Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK 91
          T LH AA  GH++VV  LLE  +++      NG+T LH AAR GHLEVVK L+  
Sbjct: 37 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 52.7 bits (128), Expect = 3e-09
 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 137 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           G T LH+A + G  ++V+ LL   G DVN+ +K G +PL +A + G+ E+  LL EAGA
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 86.1 bits (214), Expect = 8e-21
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 76  AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN 135
            +   H      LV +    G          L  A +   +D V  L+     V   +D 
Sbjct: 1   GSSHHHHHHSSGLVPR----GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDK 55

Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
            G+T LH+A + G  ++V+ LL   G DV + +K G++  D++   GN +L  +L+
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLE-AGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 77.2 bits (191), Expect = 1e-17
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPS 94
             L  AA  G  D V  L+   +++      NG T LH AAR GHLEVVK L+    D  
Sbjct: 26  KKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIV 119
                DK G+TA  +++   NED+ 
Sbjct: 85  AQ---DKFGKTAFDISIDNGNEDLA 106

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 75.4 bits (185), Expect = 2e-15
 Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 3/105 (2%)

Query: 99  TDKKGQTALHMAVKGQNEDIV--LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
             +  +TALH+AV+  +   +  ++ +  +   L  +  KG+TALH        + +  L
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL-KL 223

Query: 157 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDH 201
           L      +   N++GE+PLD+A++L +     LL +A +     H
Sbjct: 224 LLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSH 268

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 59.2 bits (143), Expect = 4e-10
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 11/121 (9%)

Query: 9   QQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQG---HIDVVNFLLEIDSNLAKIA 65
                       L E   L    +    TALH A        + +V+FL++   NL K  
Sbjct: 144 FGLLQAYADGVDLTEKIPLANGHEPDE-TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT 202

Query: 66  RNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELI 123
              G T LH      + E +K L+            ++ G+T L +A + ++E    EL+
Sbjct: 203 -GKGSTALHYCCLTDNAECLKLLLRGKASIEI---ANESGETPLDIAKRLKHEHCE-ELL 257

Query: 124 R 124
            
Sbjct: 258 T 258

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 71.9 bits (176), Expect = 3e-14
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 102 KGQTALHMAVKGQNED--IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI 159
             +  LH+AVK  N+    +++ I  +   L  +   GNTALH A    +   ++ LL  
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248

Query: 160 EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
               V ++N+AGE+ LD+A K  + E   LL++A
Sbjct: 249 -RALVGTVNEAGETALDIARKKHHKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 52.3 bits (125), Expect = 9e-08
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 13/99 (13%)

Query: 65  ARNNGKTVLHSAARMGH---LEVVKALV--SKDPSTGFRTDKKGQTALHMAVKGQNEDIV 119
           A+   + VLH A ++ +   L +V  ++               G TALH A      D +
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA---KAADGNTALHYAALYNQPDCL 242

Query: 120 LELIRP--DPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
             L++       +   +  G TAL IA KK   +    L
Sbjct: 243 KLLLKGRALVGTV---NEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.4 bits (102), Expect = 7e-05
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 10/85 (11%)

Query: 136 KGNTALHIAIKKGRTQIVR--CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
                LH+A+K      +     +   G  +++    G + L  A      +   LL + 
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248

Query: 194 GAAHSKDHGKPPSATKQLKQTVSDI 218
            A              +  +T  DI
Sbjct: 249 RA--------LVGTVNEAGETALDI 265

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 11  SRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGK 70
           ++  L L + + +    +       +TALH AA     D +  LL+  + +       G+
Sbjct: 202 NQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGE 260

Query: 71  TVLHSAARMGHLEVVKAL 88
           T L  A +  H E  + L
Sbjct: 261 TALDIARKKHHKECEELL 278

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 67.1 bits (163), Expect = 2e-12
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 9/169 (5%)

Query: 69  GKTVLHSAARMGHLEV-VKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR--P 125
           G  +  ++     L     AL            +   T L  A    +      L++   
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259

Query: 126 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 185
           + +     D+ G   LH A   G T +    L   G D+ + +  G  PL +A +  N +
Sbjct: 260 NVNQA---DSAGRGPLHHATILGHTGLACLFLK-RGADLGARDSEGRDPLTIAMETANAD 315

Query: 186 LFSLLKEAGA-AHSKDHGKPPSAT-KQLKQTVSDIKHDVQSQLQQSRQT 232
           + +LL+ A         G+    T   + +  S +  D   +L +    
Sbjct: 316 IVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSRRSHD 364

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 54.4 bits (130), Expect = 3e-08
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 30  TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV 89
                 +T L  A A   +    FLL+  +N+   A + G+  LH A  +GH  +    +
Sbjct: 230 NGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHATILGHTGLACLFL 288

Query: 90  SKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
            +    G R D +G+  L +A++  N DIV  L+R
Sbjct: 289 KRGADLGAR-DSEGRDPLTIAMETANADIV-TLLR 321

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 9/97 (9%)

Query: 65  ARNNGKTVLHSAARM---GHLEVVKALV--SKDPSTGFRTDKKGQTALHMAVKGQNEDIV 119
           A+   + VLH A ++     L +V  ++               G TALH A      D +
Sbjct: 167 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD---AKAADGNTALHYAALYNQPDCL 223

Query: 120 LELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
             L++    V    +  G TAL IA KK   +    L
Sbjct: 224 KLLLKGRALV-GTVNEAGETALDIARKKHHKECEELL 259

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 3e-07
 Identities = 38/257 (14%), Positives = 77/257 (29%), Gaps = 69/257 (26%)

Query: 5   HFMWQQ-SRVILVL-----KELLGEFPN----LVMTTDLSCSTALHTAAAQGHIDVVNFL 54
               +     +LVL      +    F      L+ T     +  L +AA   HI + +  
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL-SAATTTHISLDHHS 295

Query: 55  L-----EIDSNLAKIARNNGKTVLHSAARMGH---LEVVKALVSKDPST--GFR---TDK 101
           +     E+ S L K   +     L       +   L ++   +    +T   ++    DK
Sbjct: 296 MTLTPDEVKSLLLKYL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 102 KGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 161
              T +  ++         ++     SV            HI         +  L+  + 
Sbjct: 355 L-TTIIESSLNVLEPAEYRKMFD-RLSVFP-PS------AHIPTI------LLSLIWFDV 399

Query: 162 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHD 221
           I            + V  KL     +SL++                 KQ K++   I   
Sbjct: 400 IK--------SDVMVVVNKLHK---YSLVE-----------------KQPKESTISI-PS 430

Query: 222 VQSQLQQSRQTGFKVHK 238
           +  +L+   +  + +H+
Sbjct: 431 IYLELKVKLENEYALHR 447

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 41/338 (12%), Positives = 106/338 (31%), Gaps = 88/338 (26%)

Query: 5   HFM-WQQSRVILVLKELLGEF-PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLA 62
           H M ++        K++L  F    V   +  C             DV +          
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFV--DNFDCK------------DVQDMP-------- 42

Query: 63  KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRT-----DKKGQTALHMAVKG---Q 114
                  K++L         E+   ++SKD  +G          K +  +   V+     
Sbjct: 43  -------KSILSKE------EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89

Query: 115 NEDIVLELIRP---DPSVLKLE----------DNKGNTALHIAIKKGRTQIVRCLLSI-- 159
           N   ++  I+     PS++             DN+     +++  +   ++ + LL +  
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 160 -EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH----SKDHGKPPSATKQLKQT 214
            + + ++ +  +G++ +   +   + ++    K             +  P +  + L++ 
Sbjct: 150 AKNVLIDGVLGSGKTWV-ALDVCLSYKV--QCKMDFKIFWLNLKNCN-SPETVLEMLQKL 205

Query: 215 VSDIKHDVQSQLQQSRQTGFKVHKIAKKLKKL-HISGLNNA------INSSTVVA----- 262
           +  I  +  S+   S     ++H I  +L++L       N       + ++         
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265

Query: 263 --VLIAT----VAFAAIFTVPGQY-VEEKTEGFSLGQA 293
             +L+ T    V             ++  +   +  + 
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	437
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.98
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.83
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.72
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.7

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=9e-37  Score=288.52  Aligned_cols=207  Identities=26%  Similarity=0.297  Sum_probs=182.0

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCc--ccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHH
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPN--LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR   78 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~--~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~   78 (437)
                      +||||.|+..|+ .+++++|++.+++  ..+..|..|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+.
T Consensus        10 ~t~L~~A~~~g~-~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~   87 (282)
T 1oy3_D           10 DTALHLAVIHQH-EPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACR   87 (282)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTT
T ss_pred             CcHHHHHHHcCC-HHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence            589999999999 9999999998665  46788999999999999999999999999999987 6789999999999999


Q ss_pred             cCCHHHHHHHHhCCCCC----------------------------------------------CcccCCCCCcHHHHHHh
Q 013760           79 MGHLEVVKALVSKDPST----------------------------------------------GFRTDKKGQTALHMAVK  112 (437)
Q Consensus        79 ~g~~~iv~~Ll~~~~~~----------------------------------------------~~~~d~~g~t~Lh~A~~  112 (437)
                      .|+.+++++|++.+++.                                              ....|..|.||||+|+.
T Consensus        88 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  167 (282)
T 1oy3_D           88 VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI  167 (282)
T ss_dssp             TTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHH
T ss_pred             cCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHH
Confidence            99999999999987652                                              12347889999999999


Q ss_pred             CCCHHHHHHhhcCCCCccccCCC-CCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHH
Q 013760          113 GQNEDIVLELIRPDPSVLKLEDN-KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK  191 (437)
Q Consensus       113 ~g~~~iv~~Ll~~~~~~~~~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~  191 (437)
                      .|+.+++++|++.+.++ +.++. .|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+
T Consensus       168 ~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll  245 (282)
T 1oy3_D          168 HKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNPILARLLR  245 (282)
T ss_dssp             TTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCCCHHHHHHHcCCcHHHHHHH
Confidence            99999999999999887 66664 59999999999999999999999 79999999999999999999999999999999


Q ss_pred             HcCCCcccCCCCCCChHHHH
Q 013760          192 EAGAAHSKDHGKPPSATKQL  211 (437)
Q Consensus       192 ~~ga~~~~~~~~~~~~~~~~  211 (437)
                      ++|++....+..+.++....
T Consensus       246 ~~ga~~~~~~~~g~tpl~~a  265 (282)
T 1oy3_D          246 AHGAPEPEDGGDKLSPCSSS  265 (282)
T ss_dssp             HTTCCCCCCC----------
T ss_pred             HcCCCcCcCCCccccccccc
Confidence            99999998888887776544

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=5.2e-36  Score=274.69  Aligned_cols=207  Identities=28%  Similarity=0.327  Sum_probs=191.0

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcC--CchhHhhhcCCCcHHHHHHH
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID--SNLAKIARNNGKTVLHSAAR   78 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~--~~~~~~~~~~G~tpLh~Aa~   78 (437)
                      .||||.|+..|+ .++++.|++.+++.....|.+|.||||+|+..|+.+++++|++.+  .+.....|..|.||||+|+.
T Consensus         3 ~t~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            3 NYPLHQACMENE-FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             ccHHHHHHHhCC-HHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            489999999999 999999999999888789999999999999999999999999999  66544478899999999999


Q ss_pred             cCCHHHHHHHHhCC--CCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHh
Q 013760           79 MGHLEVVKALVSKD--PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL  156 (437)
Q Consensus        79 ~g~~~iv~~Ll~~~--~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L  156 (437)
                      .|+.+++++|++.+  ++... .|..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L  159 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNK-ITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELL  159 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCccccc-CCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999998  66554 4889999999999999999999999998876 88999999999999999999999999


Q ss_pred             hcccC-CCccccccCCCCHHHHHHHcCcHHHHHHHH-HcCCCcccCCCCCCChHHHH
Q 013760          157 LSIEG-IDVNSLNKAGESPLDVAEKLGNTELFSLLK-EAGAAHSKDHGKPPSATKQL  211 (437)
Q Consensus       157 l~~~g-~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~-~~ga~~~~~~~~~~~~~~~~  211 (437)
                      ++ .| ++++.+|..|.||||+|+..++.+++++|+ +.|++....+..+.++....
T Consensus       160 l~-~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A  215 (228)
T 2dzn_A          160 CG-LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA  215 (228)
T ss_dssp             HT-TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGC
T ss_pred             Hh-cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHH
Confidence            99 56 999999999999999999999999999999 99999988888887766543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.1e-36  Score=284.58  Aligned_cols=208  Identities=24%  Similarity=0.242  Sum_probs=168.8

Q ss_pred             CchhhHHHHcC-------------CcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhc
Q 013760            1 MDMIHFMWQQS-------------RVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN   67 (437)
Q Consensus         1 ~t~Lh~A~~~g-------------~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   67 (437)
                      +||||.|+..|             + .++++.|++.+++.....|.+|.||||+|+..|+.+++++|++.|+++ +..|.
T Consensus        11 ~tpL~~A~~~g~~~~~~~~~~~~~~-~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~   88 (253)
T 1yyh_A           11 FTPLMIASCSGGGLETGNSEEEEDA-PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDN   88 (253)
T ss_dssp             ------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred             CcHHHHHHhccccccccchhhcCCC-hHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCCCC
Confidence            58999999987             8 999999999999987778999999999999999999999999999987 67899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHc
Q 013760           68 NGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK  147 (437)
Q Consensus        68 ~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~  147 (437)
                      +|.||||+|+..|+.+++++|++.++......|..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..
T Consensus        89 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~  167 (253)
T 1yyh_A           89 MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAV  167 (253)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence            99999999999999999999999998444556999999999999999999999999998876 88999999999999999


Q ss_pred             CcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHHH
Q 013760          148 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  212 (437)
Q Consensus       148 g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  212 (437)
                      |+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|++....+..+.++.....
T Consensus       168 ~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~  231 (253)
T 1yyh_A          168 NNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ  231 (253)
T ss_dssp             TCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHH
Confidence            99999999999 89999999999999999999999999999999999999988888888776554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.2e-35  Score=273.00  Aligned_cols=206  Identities=28%  Similarity=0.333  Sum_probs=194.6

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      ||||.|+..|+ ++.++++++.++...+..|.+|.||||+|+..|+.+++++|++.|.++ +..|..|.||||+|+..|+
T Consensus         8 ~~l~~A~~~g~-~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~   85 (231)
T 3aji_A            8 IMICNLAYSGK-LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGX   85 (231)
T ss_dssp             SHHHHHHHHTC-HHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTC
T ss_pred             chHHHHHHhCC-HHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHcCH
Confidence            79999999999 999999999999888889999999999999999999999999999887 6788999999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccC
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG  161 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  161 (437)
                      .+++++|++.+++.... |..|.||||+|+..|+.+++++|++.+.++ +.+|..|.||||.|+..|+.+++++|++ .|
T Consensus        86 ~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g  162 (231)
T 3aji_A           86 DEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLF-YK  162 (231)
T ss_dssp             HHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TT
T ss_pred             HHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHh-cC
Confidence            99999999999998754 899999999999999999999999998876 8899999999999999999999999999 89


Q ss_pred             CCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHHH
Q 013760          162 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  212 (437)
Q Consensus       162 ~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  212 (437)
                      ++++.+|..|.||||+|+..++.+++++|+++|++....+..+.++.....
T Consensus       163 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  213 (231)
T 3aji_A          163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK  213 (231)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSC
T ss_pred             CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            999999999999999999999999999999999999888888888776553

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=5.3e-35  Score=269.73  Aligned_cols=207  Identities=24%  Similarity=0.305  Sum_probs=191.7

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      .||||.|+..|+ .+++++|++.+.+ .+..|.+|.||||+|+..|+.+++++|++.|.++ +..+..|.||||+|+..|
T Consensus        12 ~t~L~~A~~~g~-~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   88 (237)
T 3b7b_A           12 RSPLHAAAEAGH-VDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKG   88 (237)
T ss_dssp             CCHHHHHHHHTC-HHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCc-HHHHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcC
Confidence            489999999999 9999999999876 4578899999999999999999999999999887 668889999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhccc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  160 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  160 (437)
                      +.+++++|++.++......|..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .
T Consensus        89 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~  166 (237)
T 3b7b_A           89 HYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLA-A  166 (237)
T ss_dssp             CHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHT-T
T ss_pred             CHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHH-c
Confidence            9999999999995544556899999999999999999999999998876 8899999999999999999999999999 8


Q ss_pred             CCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHHH
Q 013760          161 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  212 (437)
Q Consensus       161 g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  212 (437)
                      |++++..|..|.||||+|+..++.+++++|+++|++....+..+.++.....
T Consensus       167 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~  218 (237)
T 3b7b_A          167 KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS  218 (237)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSC
T ss_pred             CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999888888888776543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.3e-35  Score=265.24  Aligned_cols=191  Identities=20%  Similarity=0.259  Sum_probs=177.5

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      .||||.|+..|+ .+.++.|++.++...+..|.+|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|
T Consensus         6 ~~~L~~A~~~g~-~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~   83 (201)
T 3hra_A            6 VGALLEAANQRD-TKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQG   83 (201)
T ss_dssp             TTHHHHHHHTTC-HHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             ccHHHHHHHhcc-HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence            489999999999 999999999998667889999999999999999999999999999987 678899999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCc-----HHHHHH
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR-----TQIVRC  155 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~-----~~iv~~  155 (437)
                      +.+++++|++.+.......|..|.||||+|+..|+.+++++|++.++..++.+|.+|+||||+|+..++     .+++++
T Consensus        84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~  163 (201)
T 3hra_A           84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL  163 (201)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred             CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence            999999999555433445689999999999999999999999999955569999999999999999988     999999


Q ss_pred             hhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcC
Q 013760          156 LLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG  194 (437)
Q Consensus       156 Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~g  194 (437)
                      |++ .|++++.+|..|.||||+|+..++.+++++|+++|
T Consensus       164 Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          164 LME-NGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHH-CCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            999 89999999999999999999999999999999876

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=5.1e-35  Score=270.19  Aligned_cols=205  Identities=22%  Similarity=0.236  Sum_probs=187.1

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhh---CCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHH
Q 013760            1 MDMIHFMWQQSRVILVLKELLGE---FPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAA   77 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~---~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa   77 (437)
                      +||||.|+..|+ .+++++|++.   .+...+..|..|.||||+|+..|+.+++++|++.|+++ +..|.+|.||||+|+
T Consensus        10 ~t~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~   87 (241)
T 1k1a_A           10 DTPLHIAVVQGN-LPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLAC   87 (241)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             CcHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHH
Confidence            589999999999 9999999983   44456778999999999999999999999999999987 678899999999999


Q ss_pred             HcCCHHHHHHHHhCCC----CCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCC-CCCChHHHHHHHcCcHHH
Q 013760           78 RMGHLEVVKALVSKDP----STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLED-NKGNTALHIAIKKGRTQI  152 (437)
Q Consensus        78 ~~g~~~iv~~Ll~~~~----~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~G~TpLh~A~~~g~~~i  152 (437)
                      ..|+.+++++|++.++    +.. ..|..|.||||+|+..|+.+++++|++.+.++ +..| .+|+||||+|+..|+.++
T Consensus        88 ~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~  165 (241)
T 1k1a_A           88 EHRSPTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSM  165 (241)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             HcCCHHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHH
Confidence            9999999999999987    444 45889999999999999999999999999887 6666 889999999999999999


Q ss_pred             HHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHH
Q 013760          153 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQ  210 (437)
Q Consensus       153 v~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~  210 (437)
                      +++|++ .|++++.+|..|.||||+|+..++.+++++|+++|++....+..+.++...
T Consensus       166 v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~  222 (241)
T 1k1a_A          166 VQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV  222 (241)
T ss_dssp             HHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTT
T ss_pred             HHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHH
Confidence            999999 799999999999999999999999999999999999998877777666543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=6.4e-35  Score=266.64  Aligned_cols=194  Identities=22%  Similarity=0.280  Sum_probs=180.1

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +||||.|+..|+ .+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.++...+..+.+|.||||+|+..|
T Consensus        26 ~t~L~~A~~~g~-~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  103 (223)
T 2f8y_A           26 ETALHLAARYSR-SDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA  103 (223)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHT
T ss_pred             CchHHHHHHcCC-HHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhC
Confidence            589999999999 9999999999776 45688999999999999999999999999988555778899999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhccc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  160 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  160 (437)
                      +.+++++|++.++++... |..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .
T Consensus       104 ~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~  180 (223)
T 2f8y_A          104 VEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLD-H  180 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCcCc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHH-c
Confidence            999999999999988754 899999999999999999999999998776 8899999999999999999999999999 8


Q ss_pred             CCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCccc
Q 013760          161 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK  199 (437)
Q Consensus       161 g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~  199 (437)
                      |++++.+|..|.||+++|+..++.+++++|+++|+....
T Consensus       181 ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~  219 (223)
T 2f8y_A          181 FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP  219 (223)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC
T ss_pred             CCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCccc
Confidence            999999999999999999999999999999999997643

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=275.21  Aligned_cols=204  Identities=22%  Similarity=0.258  Sum_probs=189.4

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +||||.|+..|+ .++++.|++.+.+ ++.+|.+|.||||+|+..|+.+++++|++.|+++ +..|.+|.||||+|+..|
T Consensus        60 ~t~L~~Aa~~g~-~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~  136 (285)
T 3d9h_A           60 WSPMHEAAIHGH-QLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSG  136 (285)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHHHTTCC-SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHcCC-HHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcC
Confidence            589999999999 9999999999876 4578999999999999999999999999999887 678999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhccc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  160 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  160 (437)
                      +.+++++|++.+++...  +.+|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .
T Consensus       137 ~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~  212 (285)
T 3d9h_A          137 SWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLE-S  212 (285)
T ss_dssp             CHHHHHHHHHTTCCSSC--SCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHH-T
T ss_pred             HHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH-C
Confidence            99999999999998763  556999999999999999999999998876 8899999999999999999999999999 7


Q ss_pred             CCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHHH
Q 013760          161 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  212 (437)
Q Consensus       161 g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  212 (437)
                      |++++. |..|.||||+|+..++.+++++|+++|++....+..+.++.....
T Consensus       213 ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~  263 (285)
T 3d9h_A          213 GADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP  263 (285)
T ss_dssp             TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC
T ss_pred             CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc
Confidence            999995 899999999999999999999999999999988888887765543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.5e-34  Score=278.15  Aligned_cols=206  Identities=24%  Similarity=0.288  Sum_probs=160.9

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +||||.|+..|+ .+++++|++.+.+ ++..|.+|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|
T Consensus        59 ~t~L~~A~~~g~-~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~  135 (351)
T 3utm_A           59 STPLHLAAGYNR-VRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKN  135 (351)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCC-HHHHHHHHHcCCC-CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcC
Confidence            367777777777 7777777777655 3456777777777777777777777777777776 556777777788777777


Q ss_pred             CHHHHHHHHhCCCCCCcc-----------------------------------------------------cCCCCCcHH
Q 013760           81 HLEVVKALVSKDPSTGFR-----------------------------------------------------TDKKGQTAL  107 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~-----------------------------------------------------~d~~g~t~L  107 (437)
                      +.+++++|++.++++...                                                     .+..|.|||
T Consensus       136 ~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L  215 (351)
T 3utm_A          136 RVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETAL  215 (351)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHH
T ss_pred             CHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHH
Confidence            777777777776664421                                                     234567777


Q ss_pred             HHHHhC---CCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcH
Q 013760          108 HMAVKG---QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT  184 (437)
Q Consensus       108 h~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~  184 (437)
                      |+|+..   ++.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+..++.
T Consensus       216 ~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~t~L~~A~~~~~~  293 (351)
T 3utm_A          216 HCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHL  293 (351)
T ss_dssp             HHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcH
Confidence            777777   4467777777777665 7788889999999999999999999998 7899999999999999999999999


Q ss_pred             HHHHHHHHcCCCcccCCCCCCChHHHH
Q 013760          185 ELFSLLKEAGAAHSKDHGKPPSATKQL  211 (437)
Q Consensus       185 ~i~~~L~~~ga~~~~~~~~~~~~~~~~  211 (437)
                      +++++|+++|+++...+..+.++....
T Consensus       294 ~~v~~Ll~~gad~~~~~~~g~tal~~a  320 (351)
T 3utm_A          294 QTCRLLLSYGSDPSIISLQGFTAAQMG  320 (351)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHS
T ss_pred             HHHHHHHHcCCCCCCcCCCCCChhhhh
Confidence            999999999998888887777766544

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4.9e-35  Score=279.54  Aligned_cols=205  Identities=25%  Similarity=0.319  Sum_probs=185.7

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      ||||.||..|+ .++++.|++.+.+ ++..|.+|.||||+|+..|+.+++++|++.|+++ +..|.+|.||||+|+..|+
T Consensus        42 t~l~~A~~~g~-~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~  118 (299)
T 1s70_B           42 AVFLAACSSGD-TEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGY  118 (299)
T ss_dssp             HHHHHHHHHTC-HHHHHHHHHHCCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             cHHHHHHHcCC-HHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCC
Confidence            68999999999 9999999999877 4578999999999999999999999999999987 6789999999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCC--------------------------ccccCCC
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS--------------------------VLKLEDN  135 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~--------------------------~~~~~d~  135 (437)
                      .+++++|++.++++... |..|.||||+|+..++.++++.++.....                          .....|.
T Consensus       119 ~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  197 (299)
T 1s70_B          119 LDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (299)
T ss_dssp             HHHHHHHHHTTCCTTCC-CTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             HHHHHHHHhCCCCCCCc-CCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcC
Confidence            99999999999998754 89999999999999999999877754221                          2234677


Q ss_pred             CCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHH
Q 013760          136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  211 (437)
Q Consensus       136 ~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  211 (437)
                      .|.||||+|+..|+.+++++|++ .|+++|.+|..|.||||+|+..|+.+++++|+++|++.+..+..+.++....
T Consensus       198 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A  272 (299)
T 1s70_B          198 SGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA  272 (299)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            89999999999999999999999 8999999999999999999999999999999999999988888887776544

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.1e-35  Score=274.52  Aligned_cols=194  Identities=23%  Similarity=0.266  Sum_probs=177.7

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCc---ccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHH
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPN---LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAA   77 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~---~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa   77 (437)
                      +||||.|+..|+ .++++.|++.++.   .++..|..|.||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+
T Consensus         9 ~t~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   86 (236)
T 1ikn_D            9 DSFLHLAIIHEE-KALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLAC   86 (236)
T ss_dssp             CCTTHHHHHTTC-SSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHH
T ss_pred             CchhHHHHHcCC-hhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence            589999999999 9999999998764   46788999999999999999999999999999987 678899999999999


Q ss_pred             HcCCHHHHHHHHhCCCCC-----CcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCC-CCChHHHHHHHcCcHH
Q 013760           78 RMGHLEVVKALVSKDPST-----GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN-KGNTALHIAIKKGRTQ  151 (437)
Q Consensus        78 ~~g~~~iv~~Ll~~~~~~-----~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~-~G~TpLh~A~~~g~~~  151 (437)
                      ..|+.+++++|++.+++.     ....|..|.||||+|+..|+.+++++|++.+.++ +.+|. +|+||||+|+..|+.+
T Consensus        87 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~  165 (236)
T 1ikn_D           87 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPD  165 (236)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHH
Confidence            999999999999998753     2345888999999999999999999999999887 77887 9999999999999999


Q ss_pred             HHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcc
Q 013760          152 IVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  198 (437)
Q Consensus       152 iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~  198 (437)
                      ++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|++..
T Consensus       166 ~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          166 LVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             HHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             HHHHHHH-cCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            9999999 899999999999999999999999999999999999765

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.3e-34  Score=266.06  Aligned_cols=190  Identities=26%  Similarity=0.298  Sum_probs=179.1

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +||||.|+..|+ .+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|
T Consensus        41 ~t~L~~A~~~g~-~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~  117 (231)
T 3aji_A           41 RTALHWACSAGH-TEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKN  117 (231)
T ss_dssp             CCHHHHHHHHTC-HHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCc-HHHHHHHHHhCCC-CCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence            589999999999 9999999999776 4578899999999999999999999999999987 678899999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhccc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  160 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  160 (437)
                      +.+++++|++.+.++... |..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .
T Consensus       118 ~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~  194 (231)
T 3aji_A          118 RHEIAVMLLEGGANPDAK-DHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVT-Q  194 (231)
T ss_dssp             CHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHH-T
T ss_pred             CHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-cccCCCCCCHHHHHHHCCCHHHHHHHHH-C
Confidence            999999999999988754 889999999999999999999999998876 8899999999999999999999999999 8


Q ss_pred             CCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCC
Q 013760          161 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA  196 (437)
Q Consensus       161 g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~  196 (437)
                      |++++.+|..|.||+|+|...++.+++++|.++|++
T Consensus       195 ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          195 GASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             TCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            999999999999999999999999999999998865

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.4e-34  Score=268.84  Aligned_cols=190  Identities=22%  Similarity=0.273  Sum_probs=176.7

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +||||.|+..|+ .++++.|++.+.+ .+..|..|.||||+|+..|+.+++++|++.++...+..+.+|.||||+|+..|
T Consensus        58 ~t~L~~A~~~g~-~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  135 (253)
T 1yyh_A           58 ETALHLAARYSR-SDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA  135 (253)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHT
T ss_pred             CcHHHHHHHcCC-HHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcC
Confidence            589999999999 9999999999876 45788999999999999999999999999988555778999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhccc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  160 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  160 (437)
                      +.+++++|++.+++++.. |..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .
T Consensus       136 ~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~  212 (253)
T 1yyh_A          136 VEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLD-H  212 (253)
T ss_dssp             CSSHHHHHHHTTCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-T
T ss_pred             hHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHH-c
Confidence            999999999999998754 899999999999999999999999999886 8899999999999999999999999999 8


Q ss_pred             CCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 013760          161 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA  195 (437)
Q Consensus       161 g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga  195 (437)
                      |++++.+|..|.||+|+|++.|+.+++++|.....
T Consensus       213 ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          213 FANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred             CCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence            99999999999999999999999999999986543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=8e-35  Score=274.93  Aligned_cols=205  Identities=20%  Similarity=0.229  Sum_probs=163.0

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcc-------cccCCCCCCcHHHHHHHcCCH-HHHHHHHhcCCchhHhhhcCCCcHH
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNL-------VMTTDLSCSTALHTAAAQGHI-DVVNFLLEIDSNLAKIARNNGKTVL   73 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~-------~~~~d~~g~TpLh~Aa~~g~~-~iv~~Ll~~~~~~~~~~~~~G~tpL   73 (437)
                      |||+.||..|+ +++|+.|++.+.+.       .+..|..|.||||.|+..++. .+++.|++.|+++ +.+|.+|+|||
T Consensus        13 ~~L~~A~~~G~-~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~TpL   90 (269)
T 4b93_B           13 EKLLRAVADGD-LEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDGSSPL   90 (269)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHTCC----------------------------------------CCCCT-TCCCTTSCCHH
T ss_pred             hHHHHHHHcCC-HHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCCCCHH
Confidence            69999999999 99999999987542       345678899999999998876 4889999999997 78899999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHH
Q 013760           74 HSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIV  153 (437)
Q Consensus        74 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv  153 (437)
                      |+|+..|+.+++++|++.+++.... +.+|.||+|.|+..++.++++.|++.+.++ +.+|.+|+||||+|+..|+.+++
T Consensus        91 h~A~~~g~~~~v~~Ll~~~a~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v  168 (269)
T 4b93_B           91 HVAALHGRADLIPLLLKHGANAGAR-NADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELV  168 (269)
T ss_dssp             HHHHHTTCTTHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGH
T ss_pred             HHHHHcCcHHHHHHHHhcCCCcCcc-CCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHH
Confidence            9999999999999999999998754 899999999999999999999999999886 89999999999999999999999


Q ss_pred             HHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHH
Q 013760          154 RCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  211 (437)
Q Consensus       154 ~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  211 (437)
                      ++|++ .|+|+|.+|..|.||||+|+..|+.+++++|+++|++++..+..+.++....
T Consensus       169 ~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  225 (269)
T 4b93_B          169 ALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA  225 (269)
T ss_dssp             HHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGS
T ss_pred             HHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            99999 8999999999999999999999999999999999999988888887776543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-32  Score=260.27  Aligned_cols=207  Identities=24%  Similarity=0.247  Sum_probs=181.9

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      ||||.|++.|+ ++++++|++.+++.....+..|.||||+|+..|+.+++++|++.|+++ +..|.+|.||||+|+..|+
T Consensus         7 ~~L~~A~~~g~-~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~   84 (285)
T 1wdy_A            7 HLLIKAVQNED-VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred             hHHHHHHHcCC-HHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCC
Confidence            78999999999 999999999988766555888999999999999999999999998887 6678899999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccC----------CCCCChHHHHHHHcCcHH
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLE----------DNKGNTALHIAIKKGRTQ  151 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~----------d~~G~TpLh~A~~~g~~~  151 (437)
                      .+++++|++.++++... |..|.||||+|+..|+.+++++|++.+.++ +..          |..|.||||.|+..|+.+
T Consensus        85 ~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T 1wdy_A           85 VKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             HHHHHHHHHTTCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHHcCCCCCcc-CcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHcCCHH
Confidence            99999999999887754 888999999999999999999999988765 444          778999999999999999


Q ss_pred             HHHHhhcccCCCccccccCCCCHHHHHHHcCc----HHHHHHHHHcCCCcccCCCCCCChHHHHH
Q 013760          152 IVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN----TELFSLLKEAGAAHSKDHGKPPSATKQLK  212 (437)
Q Consensus       152 iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~----~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  212 (437)
                      ++++|++..|++++..|..|.||||.|+..++    .+++++|+++|++.+..+..+.++.....
T Consensus       163 ~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~  227 (285)
T 1wdy_A          163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV  227 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHH
T ss_pred             HHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            99999985699999999999999999999988    88999999999998887777777765543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3.8e-33  Score=271.50  Aligned_cols=196  Identities=24%  Similarity=0.322  Sum_probs=154.1

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCch--------------------
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL--------------------   61 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~--------------------   61 (437)
                      ||||.|+++|+ +|+|+.||+.+.+.....+..|.||||+|+..|+.++|++|+++|+++                    
T Consensus        27 t~L~~Av~~g~-~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~  105 (337)
T 4g8k_A           27 HLLIKAVQNED-VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSV  105 (337)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             hHHHHHHHcCC-HHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccc
Confidence            68999999999 999999999988754444556999999999999999999999988754                    


Q ss_pred             ------------hHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc---------cCCCCCcHHHHHHhCCCHHHHH
Q 013760           62 ------------AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR---------TDKKGQTALHMAVKGQNEDIVL  120 (437)
Q Consensus        62 ------------~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~---------~d~~g~t~Lh~A~~~g~~~iv~  120 (437)
                                  .+..|..|.||||+|+..|+.+++++|++.++++...         .+..|.||||+|+++|+.++++
T Consensus       106 ~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~  185 (337)
T 4g8k_A          106 KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK  185 (337)
T ss_dssp             HHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHH
T ss_pred             hhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHH
Confidence                        1235677899999999999999999999988776532         3567889999999999998888


Q ss_pred             HhhcC-CCCc------------------------------------cccCCCCCChHHHHHHHcCcHHHHHHhhcccCCC
Q 013760          121 ELIRP-DPSV------------------------------------LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID  163 (437)
Q Consensus       121 ~Ll~~-~~~~------------------------------------~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~  163 (437)
                      +|+++ +.++                                    ++.+|.+|+||||+|+..|+.++++.|++..|++
T Consensus       186 ~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~  265 (337)
T 4g8k_A          186 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE  265 (337)
T ss_dssp             HHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC
T ss_pred             HHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc
Confidence            88743 2221                                    2455666777777777777777777777656777


Q ss_pred             ccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcc
Q 013760          164 VNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  198 (437)
Q Consensus       164 ~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~  198 (437)
                      +|.+|.+|.||||+|++.|+.+++++|+++|++.+
T Consensus       266 vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n  300 (337)
T 4g8k_A          266 INDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  300 (337)
T ss_dssp             TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST
T ss_pred             ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            77777777777777777777777777777777654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-32  Score=259.62  Aligned_cols=208  Identities=23%  Similarity=0.233  Sum_probs=190.0

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +||||.|+..|+ .+++++|++.+.+ .+..|.+|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|
T Consensus        40 ~t~L~~A~~~g~-~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~  116 (285)
T 1wdy_A           40 WTPLHNAVQMSR-EDIVELLLRHGAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYG  116 (285)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTT
T ss_pred             CcHHHHHHHcCC-HHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhC
Confidence            589999999999 9999999999876 4568899999999999999999999999999987 678899999999999999


Q ss_pred             CHHHHHHHHhCCCCCCccc---------CCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCc--
Q 013760           81 HLEVVKALVSKDPSTGFRT---------DKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR--  149 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~---------d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~--  149 (437)
                      +.+++++|++.+++.....         +..|.||||.|+..|+.+++++|++..+..++.+|..|+||||.|+..++  
T Consensus       117 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  196 (285)
T 1wdy_A          117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS  196 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTT
T ss_pred             CHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccc
Confidence            9999999999998876542         67899999999999999999999998444458999999999999999999  


Q ss_pred             --HHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHH-cCCCcccCCCCCCChHHHHH
Q 013760          150 --TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE-AGAAHSKDHGKPPSATKQLK  212 (437)
Q Consensus       150 --~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~-~ga~~~~~~~~~~~~~~~~~  212 (437)
                        .+++++|++ .|++++.+|..|.||||+|+..++.+++++|++ .|++.+..+..+.++.....
T Consensus       197 ~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~  261 (285)
T 1wdy_A          197 DVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV  261 (285)
T ss_dssp             THHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHH
T ss_pred             hHHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHH
Confidence              999999999 899999999999999999999999999999999 89998888888877766543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.6e-33  Score=277.16  Aligned_cols=205  Identities=20%  Similarity=0.187  Sum_probs=185.1

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +||||.|+..|+ .+++++|++.+.+ .+..|..|.||||+|+..|+.++|++|++.|++.   .+.+|.||||+|+..|
T Consensus        21 ~t~L~~Aa~~g~-~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A~~~g   95 (364)
T 3ljn_A           21 MEKIHVAARKGQ-TDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVMAN   95 (364)
T ss_dssp             HHHHHHHHHHTC-HHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHHHHTT
T ss_pred             CCHHHHHHHcCC-HHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHHHHcC
Confidence            489999999999 9999999999876 4678999999999999999999999999999854   3458999999999999


Q ss_pred             CHHHHHHHHhC----CCCCCc----------------ccCCCCCcHHHHHHhCC--CHHHHHHhhcCCCCccccCCCCCC
Q 013760           81 HLEVVKALVSK----DPSTGF----------------RTDKKGQTALHMAVKGQ--NEDIVLELIRPDPSVLKLEDNKGN  138 (437)
Q Consensus        81 ~~~iv~~Ll~~----~~~~~~----------------~~d~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~~d~~G~  138 (437)
                      +.+++++|++.    +.+...                ..|..|.||||+|+..|  +.+++++|++.+.++ +.+|.+|+
T Consensus        96 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~  174 (364)
T 3ljn_A           96 KTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADE  174 (364)
T ss_dssp             CHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSC
T ss_pred             CHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCC
Confidence            99999999998    655443                14778999999999999  999999999998776 88999999


Q ss_pred             hHHHHHHHcCcHHHHHHhhcccCCC-----ccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHHH
Q 013760          139 TALHIAIKKGRTQIVRCLLSIEGID-----VNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  212 (437)
Q Consensus       139 TpLh~A~~~g~~~iv~~Ll~~~g~~-----~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  212 (437)
                      ||||+|+..|+.+++++|++ .|++     +|..|..|.||||+|+..|+.+++++|+++|++.+..+..+.++.....
T Consensus       175 t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~  252 (364)
T 3ljn_A          175 TPLMRAMEFRNREALDLMMD-TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSV  252 (364)
T ss_dssp             CHHHHHHHTTCHHHHHHHHH-HCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHh-cccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            99999999999999999999 7777     9999999999999999999999999999999999888888877765543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=6e-34  Score=266.24  Aligned_cols=192  Identities=25%  Similarity=0.284  Sum_probs=170.4

Q ss_pred             chhhHHHHcCCcHH----HHHHHHhhCCcccc---cCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCchhHh-------
Q 013760            2 DMIHFMWQQSRVIL----VLKELLGEFPNLVM---TTDLSCSTALHTAAAQ---GHIDVVNFLLEIDSNLAKI-------   64 (437)
Q Consensus         2 t~Lh~A~~~g~~~~----~vk~Ll~~~~~~~~---~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~-------   64 (437)
                      ||||.|+..|+ .+    ++++|++.+.++..   ..|.+|.||||+|+..   |+.+++++|++.|++....       
T Consensus         4 t~L~~A~~~g~-~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~   82 (256)
T 2etb_A            4 DRLFSVVSRGV-PEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQ   82 (256)
T ss_dssp             HHHHHHHHHTC-GGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCC
T ss_pred             cHHHHHHHcCC-HHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccc
Confidence            79999999999 87    55666667766432   3799999999999999   9999999999998765311       


Q ss_pred             ---hhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCC-------------CCcHHHHHHhCCCHHHHHHhhc---C
Q 013760           65 ---ARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKK-------------GQTALHMAVKGQNEDIVLELIR---P  125 (437)
Q Consensus        65 ---~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~-------------g~t~Lh~A~~~g~~~iv~~Ll~---~  125 (437)
                         .|.+|.||||+|+..|+.+++++|++.+++++.. |..             |.||||+|+..|+.+++++|++   .
T Consensus        83 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  161 (256)
T 2etb_A           83 CTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR-ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ  161 (256)
T ss_dssp             CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             cccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence               2467999999999999999999999999998765 554             9999999999999999999999   7


Q ss_pred             CCCccccCCCCCChHHHHHHH--cCcHH-------HHHHhhcccCCCc-------cccccCCCCHHHHHHHcCcHHHHHH
Q 013760          126 DPSVLKLEDNKGNTALHIAIK--KGRTQ-------IVRCLLSIEGIDV-------NSLNKAGESPLDVAEKLGNTELFSL  189 (437)
Q Consensus       126 ~~~~~~~~d~~G~TpLh~A~~--~g~~~-------iv~~Ll~~~g~~~-------n~~n~~G~T~L~~A~~~~~~~i~~~  189 (437)
                      +.++ +.+|.+|+||||+|+.  .++.+       ++++|++ .|+++       +.+|..|.||||+|+..|+.+++++
T Consensus       162 ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~  239 (256)
T 2etb_A          162 PASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ-MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRH  239 (256)
T ss_dssp             CCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHH-cCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHH
Confidence            7776 8999999999999999  88888       9999999 89999       9999999999999999999999999


Q ss_pred             HHHcCCCc
Q 013760          190 LKEAGAAH  197 (437)
Q Consensus       190 L~~~ga~~  197 (437)
                      |+++|++.
T Consensus       240 Ll~~g~~~  247 (256)
T 2etb_A          240 ILQREFSG  247 (256)
T ss_dssp             HHHHHHHH
T ss_pred             HHhCCCCC
Confidence            99998754

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.7e-33  Score=257.21  Aligned_cols=198  Identities=25%  Similarity=0.258  Sum_probs=180.7

Q ss_pred             cCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHH
Q 013760           10 QSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALV   89 (437)
Q Consensus        10 ~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll   89 (437)
                      .|+ .+++++|++.+++.....|.+|.||||+|+..|+.+++++|++.|+++ +..|.+|.||||+|+..|+.+++++|+
T Consensus         1 gg~-~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            1 GDA-PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             -----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCc-HHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            367 889999999999887778999999999999999999999999999887 678899999999999999999999999


Q ss_pred             hCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCcccccc
Q 013760           90 SKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK  169 (437)
Q Consensus        90 ~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~  169 (437)
                      +.++......|..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|++++.+|.
T Consensus        79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~  156 (223)
T 2f8y_A           79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNN  156 (223)
T ss_dssp             HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCT
T ss_pred             HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCC
Confidence            9998555566899999999999999999999999998876 8899999999999999999999999999 7999999999


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHH
Q 013760          170 AGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  211 (437)
Q Consensus       170 ~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  211 (437)
                      .|.||||+|+..++.+++++|+++|++....+..+.++....
T Consensus       157 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  198 (223)
T 2f8y_A          157 REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIA  198 (223)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHH
Confidence            999999999999999999999999999988877777776544

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=5.3e-34  Score=271.51  Aligned_cols=191  Identities=22%  Similarity=0.181  Sum_probs=176.0

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +||||.|+..|+ .++++.|++.+.+.. ..  +|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|
T Consensus        32 ~t~L~~A~~~g~-~~~v~~Ll~~g~~~~-~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g  106 (285)
T 3kea_A           32 HSASYYAIADNN-VRLVCTLLNAGALKN-LL--ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSG  106 (285)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHHHTTGGGS-CC--TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCC-HHHHHHHHhCCCCCC-CC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHcC
Confidence            589999999999 999999999987643 33  5999999999999999999999999997 678999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCC-CcHHHHHHhCCCHHHHHHhhcCCCCccccCCC-CCChHHHHHHHcCcHHHHHHhhc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKG-QTALHMAVKGQNEDIVLELIRPDPSVLKLEDN-KGNTALHIAIKKGRTQIVRCLLS  158 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g-~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~-~G~TpLh~A~~~g~~~iv~~Ll~  158 (437)
                      +.+++++|++.++++... |..| .||||+|+..|+.+++++|++.+++.   .|. +|+||||+|+..|+.+++++|++
T Consensus       107 ~~~~v~~Ll~~ga~~~~~-~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~  182 (285)
T 3kea_A          107 NMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLD  182 (285)
T ss_dssp             CHHHHHHHHHHCGGGGGC-SSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---CCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHhcCCCCCcc-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---ccccCCccHHHHHHHcChHHHHHHHHH
Confidence            999999999999998754 8888 89999999999999999999998766   233 89999999999999999999999


Q ss_pred             ccCCCccccccCCCCH-HHHHHHcCcHHHHHHHHHcCCCcccCC
Q 013760          159 IEGIDVNSLNKAGESP-LDVAEKLGNTELFSLLKEAGAAHSKDH  201 (437)
Q Consensus       159 ~~g~~~n~~n~~G~T~-L~~A~~~~~~~i~~~L~~~ga~~~~~~  201 (437)
                       .|+++|.+|..|.|| ||+|+..++.+++++|+++|++.+..+
T Consensus       183 -~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~  225 (285)
T 3kea_A          183 -YMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN  225 (285)
T ss_dssp             -HHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT
T ss_pred             -cCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence             799999999999998 999999999999999999999987654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1e-33  Score=261.40  Aligned_cols=190  Identities=24%  Similarity=0.256  Sum_probs=172.4

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCC----chhHhhhcCCCcHHHHH
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDS----NLAKIARNNGKTVLHSA   76 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~----~~~~~~~~~G~tpLh~A   76 (437)
                      +||||.|+..|+ .+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.++    +. +..|.+|.||||+|
T Consensus        47 ~t~L~~A~~~~~-~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A  123 (241)
T 1k1a_A           47 QTPLHLAVITTL-PSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVA  123 (241)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHcCC-HHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHH
Confidence            589999999999 9999999998876 45678999999999999999999999999987    44 66788999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHh
Q 013760           77 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL  156 (437)
Q Consensus        77 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L  156 (437)
                      +..|+.+++++|++.+++.....+..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|
T Consensus       124 ~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L  202 (241)
T 1k1a_A          124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTL  202 (241)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999999988663388999999999999999999999998886 88999999999999999999999999


Q ss_pred             hcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 013760          157 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA  195 (437)
Q Consensus       157 l~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga  195 (437)
                      ++ .|++++.+|..|.||||+|+..++.++++.|.+.++
T Consensus       203 l~-~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          203 VR-SGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             HH-TTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             Hh-cCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            99 899999999999999999999999999999987664

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.9e-33  Score=244.64  Aligned_cols=158  Identities=37%  Similarity=0.566  Sum_probs=134.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCH
Q 013760           37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE  116 (437)
Q Consensus        37 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~  116 (437)
                      ++|+.||+.|+.++|+.|++.|+++ +.+|.+|+||||+|+..|+.++++.|++.+.++... |.+|+||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~-d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhh-ccCCCCHHHHHHHcCCH
Confidence            4788889999999999999888887 678888899999999999999999999888887654 88889999999999999


Q ss_pred             HHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCC
Q 013760          117 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA  196 (437)
Q Consensus       117 ~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~  196 (437)
                      +++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|+|++.+|.+|.||||+|+..|+.+++++|+++||+
T Consensus        84 ~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A           84 EVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred             HHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            9999999888776 8888899999999999999999999998 7889999999999999999999999999999999887


Q ss_pred             cc
Q 013760          197 HS  198 (437)
Q Consensus       197 ~~  198 (437)
                      .+
T Consensus       162 ie  163 (169)
T 4gpm_A          162 LE  163 (169)
T ss_dssp             --
T ss_pred             cC
Confidence            64

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=5.9e-34  Score=268.99  Aligned_cols=192  Identities=22%  Similarity=0.272  Sum_probs=169.4

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhh----CCccc---ccCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCchh------Hh
Q 013760            1 MDMIHFMWQQSRVILVLKELLGE----FPNLV---MTTDLSCSTALHTAAAQ---GHIDVVNFLLEIDSNLA------KI   64 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~----~~~~~---~~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~------~~   64 (437)
                      .||||.|+..|+ .++|+.|++.    +.+..   ...|..|.||||+|+..   |+.+++++|++.|++..      +.
T Consensus        14 ~t~L~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~   92 (273)
T 2pnn_A           14 RRSIFDAVAQSN-CQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNA   92 (273)
T ss_dssp             HHHHHHHHHTTC-SSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTC
T ss_pred             chHHHHHHHcCC-HHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhc
Confidence            379999999999 9999999984    22221   14588999999999987   99999999999976531      11


Q ss_pred             ----hhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCC--------------CCCcHHHHHHhCCCHHHHHHhhc--
Q 013760           65 ----ARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDK--------------KGQTALHMAVKGQNEDIVLELIR--  124 (437)
Q Consensus        65 ----~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~--------------~g~t~Lh~A~~~g~~~iv~~Ll~--  124 (437)
                          .|..|.||||+|+..|+.+++++|++.++++... +.              .|.||||+|+..|+.+++++|++  
T Consensus        93 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  171 (273)
T 2pnn_A           93 SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA-ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS  171 (273)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc-ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence                4568999999999999999999999999998765 44              79999999999999999999999  


Q ss_pred             -CCCCccccCCCCCChHHHHHHHcCc---------HHHHHHhhcccCCCcc-------ccccCCCCHHHHHHHcCcHHHH
Q 013760          125 -PDPSVLKLEDNKGNTALHIAIKKGR---------TQIVRCLLSIEGIDVN-------SLNKAGESPLDVAEKLGNTELF  187 (437)
Q Consensus       125 -~~~~~~~~~d~~G~TpLh~A~~~g~---------~~iv~~Ll~~~g~~~n-------~~n~~G~T~L~~A~~~~~~~i~  187 (437)
                       .+.++ +.+|.+|+||||+|+..|+         .+++++|++ .|+++|       .+|..|.||||+|+..|+.+++
T Consensus       172 ~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv  249 (273)
T 2pnn_A          172 WQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI-LGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVL  249 (273)
T ss_dssp             SCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH-hhhhcccccccccccCCCCCCHHHHHHHhChHHHH
Confidence             77765 8999999999999999988         799999999 899986       5999999999999999999999


Q ss_pred             HHHHHcCCC
Q 013760          188 SLLKEAGAA  196 (437)
Q Consensus       188 ~~L~~~ga~  196 (437)
                      ++|+++|++
T Consensus       250 ~~Ll~~ga~  258 (273)
T 2pnn_A          250 AYILQREIH  258 (273)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHCCCC
Confidence            999999993

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-32  Score=277.78  Aligned_cols=204  Identities=25%  Similarity=0.351  Sum_probs=121.3

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +||||.|+..|+ .+++++|++.+.+ .+..|.+|.||||+|+..|+.+++++|++++.++ +..+.+|.||||+|+..|
T Consensus       147 ~t~L~~A~~~g~-~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~  223 (437)
T 1n11_A          147 FTPLHVAAKYGK-VRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQN  223 (437)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHHHTTCC-TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCC-HHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcC
Confidence            366777777777 7777777766554 2345666666666666666666666666666554 344555666666666666


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhccc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  160 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  160 (437)
                      +.+++++|++.+.+.... +..|.||||+|+..|+.+++++|++.+.+. +..|..|+||||+|+..|+.+++++|++ .
T Consensus       224 ~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~  300 (437)
T 1n11_A          224 QVEVARSLLQYGGSANAE-SVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIK-H  300 (437)
T ss_dssp             CHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHH-H
T ss_pred             CHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHh-C
Confidence            666666666665554432 555666666666666666666666555444 5555555555555555555555555555 4


Q ss_pred             CCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHH
Q 013760          161 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQ  210 (437)
Q Consensus       161 g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~  210 (437)
                      |++++.+|..|.||||+|+..|+.+++++|+++|++.+..+..+.++...
T Consensus       301 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~  350 (437)
T 1n11_A          301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ  350 (437)
T ss_dssp             TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence            55555555555555555555555555555555555555554444444433

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=4.7e-33  Score=273.80  Aligned_cols=190  Identities=23%  Similarity=0.240  Sum_probs=176.3

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhc----CCchhHh------------
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEI----DSNLAKI------------   64 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~----~~~~~~~------------   64 (437)
                      +||||+|+..|+ .+++++|++.+.+   ..+.+|.||||+|+..|+.+++++|++.    +.+. +.            
T Consensus        54 ~t~L~~A~~~g~-~~~v~~Ll~~g~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~  128 (364)
T 3ljn_A           54 CTALHLACKFGC-VDTAKYLASVGEV---HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNE  128 (364)
T ss_dssp             CCHHHHHHHHCC-HHHHHHHHHHCCC---CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEE
T ss_pred             CcHHHHHHHcCC-HHHHHHHHHCCCC---ccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhh
Confidence            589999999999 9999999999884   2345899999999999999999999998    7766 34            


Q ss_pred             -----hhcCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCc----cccC
Q 013760           65 -----ARNNGKTVLHSAARMG--HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV----LKLE  133 (437)
Q Consensus        65 -----~~~~G~tpLh~Aa~~g--~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~----~~~~  133 (437)
                           .|.+|.||||+|+..|  +.+++++|++.+.+++.. |..|.||||+|+..|+.+++++|++.+++.    ++.+
T Consensus       129 ~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~  207 (364)
T 3ljn_A          129 IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK-DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA  207 (364)
T ss_dssp             ETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCC
T ss_pred             hccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccccc
Confidence                 7789999999999999  999999999999998754 899999999999999999999999988762    4889


Q ss_pred             CCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCc
Q 013760          134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  197 (437)
Q Consensus       134 d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~  197 (437)
                      |.+|+||||+|+..|+.+++++|++ .|+|+|.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       208 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          208 NKQGNSHLHWAILINWEDVAMRFVE-MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             CTTCCCTTHHHHTTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCch
Confidence            9999999999999999999999999 89999999999999999999999999999999999875

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.5e-34  Score=269.21  Aligned_cols=191  Identities=28%  Similarity=0.360  Sum_probs=149.8

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +||||.|+..++..++++.|++.+.+ ++..|.+|.||||+|+..|+.++|++|++.++++ +..+.+|.||+|+|+..|
T Consensus        53 ~t~L~~a~~~~~~~~~v~~Ll~~Gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~  130 (269)
T 4b93_B           53 CHPLCQCPKCAPAQKRLAKVPASGLG-VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQG  130 (269)
T ss_dssp             ----------------------CCCC-TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHhCCHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccC
Confidence            47999999988823588889988766 4678999999999999999999999999999987 678899999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhccc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  160 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  160 (437)
                      +.++++.|++.+++++.. |..|+||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .
T Consensus       131 ~~~~~~~Ll~~g~~~n~~-d~~g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~  207 (269)
T 4b93_B          131 HFQVVKCLLDSNAKPNKK-DLSGNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLL-H  207 (269)
T ss_dssp             CHHHHHHHHHTTCCSCCC-CTTCCCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH-T
T ss_pred             hHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHH-C
Confidence            999999999999998754 999999999999999999999999999886 8999999999999999999999999999 8


Q ss_pred             CCCccccccCCCCHHHHHHHcCc-HHHHHHHHHcCCC
Q 013760          161 GIDVNSLNKAGESPLDVAEKLGN-TELFSLLKEAGAA  196 (437)
Q Consensus       161 g~~~n~~n~~G~T~L~~A~~~~~-~~i~~~L~~~ga~  196 (437)
                      |+|+|.+|..|+||||+|+++++ .++++.|...++.
T Consensus       208 Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~  244 (269)
T 4b93_B          208 GASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVAS  244 (269)
T ss_dssp             TCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-------
T ss_pred             CCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchh
Confidence            99999999999999999988775 3444444444443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.7e-33  Score=276.93  Aligned_cols=208  Identities=21%  Similarity=0.279  Sum_probs=185.7

Q ss_pred             CchhhHHHHcCCcHHHHHHHH--------hhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcH
Q 013760            1 MDMIHFMWQQSRVILVLKELL--------GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTV   72 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll--------~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tp   72 (437)
                      .||||.|+..|+ .++++.|+        +.+.+ ++..|.+|.||||+|+..|+.++|++|++.|+++ +..|.+|.||
T Consensus       126 ~t~Lh~Aa~~g~-~~~v~~Ll~~~~~~ll~~ga~-vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~  202 (373)
T 2fo1_E          126 RTVLHWIASNSS-AEKSEDLIVHEAKECIAAGAD-VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSA  202 (373)
T ss_dssp             CCHHHHHHCTTC-CSCCTTHHHHHHHHHHHTCCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCH
T ss_pred             CCHHHHHHHCCC-HHHHHHHHHHHHHHHHhcCCC-CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCH
Confidence            489999999999 98888887        44444 5678999999999999999999999999999987 6788999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCC---CCCCcccCCCCCcHHHHHHhCC---CHHHHHHhhcCCCCcc-------ccCCCCCCh
Q 013760           73 LHSAARMGHLEVVKALVSKD---PSTGFRTDKKGQTALHMAVKGQ---NEDIVLELIRPDPSVL-------KLEDNKGNT  139 (437)
Q Consensus        73 Lh~Aa~~g~~~iv~~Ll~~~---~~~~~~~d~~g~t~Lh~A~~~g---~~~iv~~Ll~~~~~~~-------~~~d~~G~T  139 (437)
                      ||+|+..|+.+++++|++.+   .+... .|..|.||||+|+..+   +.+++++|++.+.++.       +..|.+|+|
T Consensus       203 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t  281 (373)
T 2fo1_E          203 LHQAAANRDFGMMVYMLNSTKLKGDIEE-LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT  281 (373)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSC-CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCC
T ss_pred             HHHHHHCCCHHHHHHHHhcCccccChhh-cCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCC
Confidence            99999999999999999987   45554 4899999999999998   8999999999987752       236789999


Q ss_pred             HHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHHH
Q 013760          140 ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  212 (437)
Q Consensus       140 pLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  212 (437)
                      |||+|+..|+.+++++|++..|+++|.+|..|.||||+|+..|+.+++++|+++|++.+..+..+.++.....
T Consensus       282 ~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~  354 (373)
T 2fo1_E          282 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQ  354 (373)
T ss_dssp             THHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHH
Confidence            9999999999999999998667999999999999999999999999999999999999888888877766543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.3e-32  Score=264.98  Aligned_cols=206  Identities=25%  Similarity=0.294  Sum_probs=188.2

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      |+||.|+..|+ .+.++.++...+...+..|..|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+
T Consensus        26 ~~L~~A~~~g~-~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~  103 (351)
T 3utm_A           26 DELLEAARSGN-EEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGH  103 (351)
T ss_dssp             HHHHHHHHHTC-HHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTC
T ss_pred             hhHHHHHHcCC-HHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHCCC
Confidence            68999999999 999999999877777789999999999999999999999999999987 6789999999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCcccc-----------------------------
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL-----------------------------  132 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~-----------------------------  132 (437)
                      .+++++|++.++++... |..|.||||+|+..|+.+++++|++.+.++ +.                             
T Consensus       104 ~~iv~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~  181 (351)
T 3utm_A          104 YEVTELLLKHGACVNAM-DLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHS  181 (351)
T ss_dssp             HHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcccH
Confidence            99999999999998754 899999999999999999999999987654 22                             


Q ss_pred             -------------------------CCCCCChHHHHHHHc---CcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcH
Q 013760          133 -------------------------EDNKGNTALHIAIKK---GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT  184 (437)
Q Consensus       133 -------------------------~d~~G~TpLh~A~~~---g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~  184 (437)
                                               .+..|+||||+|+..   +..+++++|++ .|+++|.+|..|.||||+|+..|+.
T Consensus       182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~  260 (351)
T 3utm_A          182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKNKDFMTPLHVAAERAHN  260 (351)
T ss_dssp             HHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHH-cCCCcCCcCCCCCCHHHHHHHcCCH
Confidence                                     346788999999999   66899999999 8999999999999999999999999


Q ss_pred             HHHHHHHHcCCCcccCCCCCCChHHHHH
Q 013760          185 ELFSLLKEAGAAHSKDHGKPPSATKQLK  212 (437)
Q Consensus       185 ~i~~~L~~~ga~~~~~~~~~~~~~~~~~  212 (437)
                      +++++|+++|++.+..+..+.++.....
T Consensus       261 ~~v~~Ll~~ga~~n~~d~~g~t~L~~A~  288 (351)
T 3utm_A          261 DVMEVLHKHGAKMNALDSLGQTALHRAA  288 (351)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            9999999999999888888877765543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=9.4e-33  Score=252.95  Aligned_cols=186  Identities=24%  Similarity=0.257  Sum_probs=168.1

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhC--CcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcC--CchhHhhhcCCCcHHHHH
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEF--PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID--SNLAKIARNNGKTVLHSA   76 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~--~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~--~~~~~~~~~~G~tpLh~A   76 (437)
                      +||||.|+..|+ .+++++|++.+  ++.....|..|.||||+|+..|+.+++++|++.|  ++. +..|.+|.||||+|
T Consensus        37 ~t~L~~A~~~~~-~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A  114 (228)
T 2dzn_A           37 RIPLHWSVSFQA-HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLA  114 (228)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHH
T ss_pred             CCHHHHHHHcCC-HHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHH
Confidence            589999999999 99999999998  5554448899999999999999999999999998  665 66788999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHh
Q 013760           77 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL  156 (437)
Q Consensus        77 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L  156 (437)
                      +..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|++.++..++.+|.+|+||||+|+..|+.+++++|
T Consensus       115 ~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~L  193 (228)
T 2dzn_A          115 VGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL  193 (228)
T ss_dssp             HHTTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHhHHHHHHHcCCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999999999998754 899999999999999999999999999555699999999999999999999999999


Q ss_pred             hcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHH
Q 013760          157 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  192 (437)
Q Consensus       157 l~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~  192 (437)
                      ++..|++++.+|.+|.||+|+|.+.   ++.++|++
T Consensus       194 l~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          194 VEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             HHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             HHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            9448999999999999999999754   45555543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=6.6e-33  Score=274.10  Aligned_cols=193  Identities=22%  Similarity=0.302  Sum_probs=175.8

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcC---CchhHhhhcCCCcHHHHHH
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEID---SNLAKIARNNGKTVLHSAA   77 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~---~~~~~~~~~~G~tpLh~Aa   77 (437)
                      +||||.|+..|+ .+++++|++.+.+. +..|.+|.||||+|+..|+.+++++|++.+   .++ +..|.+|.||||+|+
T Consensus       167 ~TpL~~A~~~g~-~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~  243 (373)
T 2fo1_E          167 NTPLMLAVLARR-RRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVA  243 (373)
T ss_dssp             CCHHHHHHHHTC-HHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHcCh-HHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHH
Confidence            589999999999 99999999998774 578899999999999999999999999987   344 567889999999999


Q ss_pred             HcC---CHHHHHHHHhCCCCCCc-------ccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHc
Q 013760           78 RMG---HLEVVKALVSKDPSTGF-------RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK  147 (437)
Q Consensus        78 ~~g---~~~iv~~Ll~~~~~~~~-------~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~  147 (437)
                      ..|   +.+++++|++.+++...       ..|..|.||||+|+..|+.+++++|++.++..++.+|.+|+||||+|+..
T Consensus       244 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~  323 (373)
T 2fo1_E          244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE  323 (373)
T ss_dssp             HSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHH
T ss_pred             HhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHc
Confidence            998   89999999999988764       24678999999999999999999999887555699999999999999999


Q ss_pred             CcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCc
Q 013760          148 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  197 (437)
Q Consensus       148 g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~  197 (437)
                      |+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|++++++.
T Consensus       324 g~~~iv~~Ll~-~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          324 GRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             TCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             CCHHHHHHHHH-cCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            99999999999 89999999999999999999999999999999998764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.8e-32  Score=250.15  Aligned_cols=207  Identities=29%  Similarity=0.277  Sum_probs=189.3

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      .||||.|+..|+ .+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.+++.....+..|.||||+|+..|
T Consensus        10 ~~~l~~A~~~g~-~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~   87 (240)
T 3eu9_A           10 TWDIVKATQYGI-YERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG   87 (240)
T ss_dssp             GCCHHHHHHTTC-HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred             chHHHHHHHcCC-hHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence            379999999999 9999999999876 45788999999999999999999999999999886666677999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCc-HHHHHHhhcc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR-TQIVRCLLSI  159 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~-~~iv~~Ll~~  159 (437)
                      +.+++++|++.+++.... |..|.||||.|+..|+.+++++|++.+.++ +.+|.+|.||||.|+..++ .+++++|++ 
T Consensus        88 ~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~-  164 (240)
T 3eu9_A           88 HLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLT-  164 (240)
T ss_dssp             CHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHH-
T ss_pred             CHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHh-
Confidence            999999999999988754 899999999999999999999999998876 8899999999999997766 789999998 


Q ss_pred             cCCCcccccc-CCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHHH
Q 013760          160 EGIDVNSLNK-AGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  212 (437)
Q Consensus       160 ~g~~~n~~n~-~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  212 (437)
                      .|++++..+. .|.||||+|+..++.+++++|+++|++....+..+.++.....
T Consensus       165 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  218 (240)
T 3eu9_A          165 FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK  218 (240)
T ss_dssp             TTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHH
T ss_pred             cCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            8999999997 9999999999999999999999999999888888777766543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.4e-32  Score=241.03  Aligned_cols=159  Identities=30%  Similarity=0.430  Sum_probs=145.4

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      ++|+.||+.|+ .++|+.|++.+.+ ++.+|.+|.||||+|+..|+.+++++|++.|+++ +.+|.+|+||||+|+..|+
T Consensus         6 ~~L~~Aa~~G~-~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGN-KDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCC-HHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCC
Confidence            47999999999 9999999999877 4678999999999999999999999999999998 7789999999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccC
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG  161 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  161 (437)
                      .+++++|++.+++++.. |.+|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|++ .|
T Consensus        83 ~~~v~~Ll~~gadvn~~-d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~G  159 (169)
T 4gpm_A           83 KEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLEK-QG  159 (169)
T ss_dssp             HHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHT-C-
T ss_pred             HHHHHHHHHCcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHH-CC
Confidence            99999999999998754 999999999999999999999999999886 8999999999999999999999999999 89


Q ss_pred             CCccc
Q 013760          162 IDVNS  166 (437)
Q Consensus       162 ~~~n~  166 (437)
                      ++++.
T Consensus       160 A~ie~  164 (169)
T 4gpm_A          160 GWLEH  164 (169)
T ss_dssp             -----
T ss_pred             CCcCC
Confidence            98865

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.5e-32  Score=251.75  Aligned_cols=185  Identities=28%  Similarity=0.298  Sum_probs=170.5

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +||||.|+..|+ .+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.++...+..+..|.||||+|+..|
T Consensus        45 ~t~L~~A~~~~~-~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  122 (237)
T 3b7b_A           45 RTPLMEAAENNH-LEAVKYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK  122 (237)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHHTTTCC-CCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHhCC-HHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcC
Confidence            489999999999 9999999998766 45688999999999999999999999999985444778899999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhccc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  160 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  160 (437)
                      +.+++++|++.++++... |..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .
T Consensus       123 ~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~  199 (237)
T 3b7b_A          123 HVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLS-R  199 (237)
T ss_dssp             CHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHCCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHT-T
T ss_pred             CHHHHHHHHHCCCCCCcc-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHhHHHHHHH-c
Confidence            999999999999998754 899999999999999999999999999886 8899999999999999999999999999 8


Q ss_pred             CCCccccccCCCCHHHHHHHcCcHHHHHHH
Q 013760          161 GIDVNSLNKAGESPLDVAEKLGNTELFSLL  190 (437)
Q Consensus       161 g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L  190 (437)
                      |++++.+|.+|.||||+|+..++.+.+..+
T Consensus       200 gad~~~~d~~g~t~l~~A~~~~~~~~~~~l  229 (237)
T 3b7b_A          200 DSDVTLKNKEGETPLQCASLNSQVWSALQM  229 (237)
T ss_dssp             TCCTTCCCTTSCCHHHHSCTTCHHHHHHHH
T ss_pred             CCCCCccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987554443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.5e-32  Score=274.03  Aligned_cols=204  Identities=27%  Similarity=0.410  Sum_probs=180.5

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +||||.|+..|+ +++|++|++++.+ .+..|..|.||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..|
T Consensus        15 ~t~L~~Aa~~g~-~~~v~~Ll~~g~~-~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g   91 (437)
T 1n11_A           15 LTPLHVASFMGH-LPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIG   91 (437)
T ss_dssp             CCHHHHHHHHTC-HHHHHHHHHTTCC-SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHT
T ss_pred             CCHHHHHHHCCC-HHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCC
Confidence            589999999999 9999999998766 3567889999999999999999999999999887 678889999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhccc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  160 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  160 (437)
                      +.+++++|++.++++... |..|.||||+|+.+|+.+++++|++.+.+. +..+.+|.||||+|+..|+.+++++|++ .
T Consensus        92 ~~~~v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~  168 (437)
T 1n11_A           92 HTNMVKLLLENNANPNLA-TTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLE-R  168 (437)
T ss_dssp             CHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHH-T
T ss_pred             CHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHh-C
Confidence            999999999999887754 888999999999999999999999988765 6778889999999999999999999998 7


Q ss_pred             CCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHH
Q 013760          161 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQ  210 (437)
Q Consensus       161 g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~  210 (437)
                      |++++..+..|.||||.|+..++.+++++|++.|++.......+.++...
T Consensus       169 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  218 (437)
T 1n11_A          169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI  218 (437)
T ss_dssp             TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHH
Confidence            89999999999999999999999999999999998887666666665543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.1e-32  Score=251.87  Aligned_cols=193  Identities=30%  Similarity=0.390  Sum_probs=176.2

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      .||||.|+..|+ .+++++|++.+++.....+..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|
T Consensus        43 ~t~L~~A~~~~~-~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~  120 (240)
T 3eu9_A           43 VTLLHWAAINNR-IDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFG  120 (240)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHhCC-HHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcC
Confidence            489999999999 999999999999877777778999999999999999999999999887 668899999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCC-HHHHHHhhcCCCCccccCCC-CCChHHHHHHHcCcHHHHHHhhc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN-EDIVLELIRPDPSVLKLEDN-KGNTALHIAIKKGRTQIVRCLLS  158 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~iv~~Ll~~~~~~~~~~d~-~G~TpLh~A~~~g~~~iv~~Ll~  158 (437)
                      +.+++++|++.+++.... |..|.||||+|+..++ .++++.|++.+.++ +..+. +|+||||+|+..|+.+++++|++
T Consensus       121 ~~~~~~~Ll~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  198 (240)
T 3eu9_A          121 HTSIVAYLIAKGQDVDMM-DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLE  198 (240)
T ss_dssp             CHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHCCSSTTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcccc-CCCCCcHHHHHHHhCChHHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHH
Confidence            999999999999988754 8999999999996655 88999999998887 66676 99999999999999999999999


Q ss_pred             ccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcc
Q 013760          159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  198 (437)
Q Consensus       159 ~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~  198 (437)
                       .|++++.+|..|.|||++|++.++.+++++|++++++..
T Consensus       199 -~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          199 -AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             -HTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred             -cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence             799999999999999999999999999999999998754

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.7e-32  Score=258.71  Aligned_cols=203  Identities=21%  Similarity=0.177  Sum_probs=161.1

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCc----------ccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPN----------LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGK   70 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~----------~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~   70 (437)
                      .|+||.|+..|+ .+.+..++...|.          ..+..|.+|.||||+|+..|+.+++++|++.|.++ +.+|.+|.
T Consensus        16 ~~~lH~Aa~~g~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~g~   93 (285)
T 3d9h_A           16 PRGSHMASMDGK-QGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHV   93 (285)
T ss_dssp             ---------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECTTCC
T ss_pred             HHHHHHHhhcCC-CCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCC
Confidence            479999999999 8888887765432          24567899999999999999999999999999887 67899999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcH
Q 013760           71 TVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT  150 (437)
Q Consensus        71 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~  150 (437)
                      ||||+|+..|+.+++++|++.+++.... |.+|.||||+|+..|+.+++++|++.+.++ + .+.+|+||||+|+..|+.
T Consensus        94 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~  170 (285)
T 3d9h_A           94 SPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHV  170 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHTCH
T ss_pred             CHHHHHHHCCcHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCH
Confidence            9999999999999999999999988754 999999999999999999999999998876 4 345699999999999999


Q ss_pred             HHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHH
Q 013760          151 QIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQ  210 (437)
Q Consensus       151 ~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~  210 (437)
                      +++++|++ .|++++.+|..|.||||+|+..++.+++++|++.|++.+. +..+.++...
T Consensus       171 ~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~  228 (285)
T 3d9h_A          171 ECVNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHA  228 (285)
T ss_dssp             HHHHHHHH-TTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHH
T ss_pred             HHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHH
Confidence            99999999 8999999999999999999999999999999999999874 4445555443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.98  E-value=3.2e-32  Score=257.22  Aligned_cols=178  Identities=20%  Similarity=0.188  Sum_probs=151.0

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCch-------------------
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL-------------------   61 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~-------------------   61 (437)
                      +||||.|+..|+ .+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+++.                   
T Consensus        46 ~t~L~~A~~~g~-~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  123 (282)
T 1oy3_D           46 QTALHLAAILGE-ASTVEKLYAAGAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT  123 (282)
T ss_dssp             CCHHHHHHHHTC-HHHHHHHHHTTCC-SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------
T ss_pred             CCHHHHHHHcCC-HHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcch
Confidence            589999999999 9999999999877 4578899999999999999999999999987541                   


Q ss_pred             ---------------------------hHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCC
Q 013760           62 ---------------------------AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ  114 (437)
Q Consensus        62 ---------------------------~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g  114 (437)
                                                 .+..|.+|.||||+|+..|+.+++++|++.++++....+..|+||||+|+..|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~  203 (282)
T 1oy3_D          124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ  203 (282)
T ss_dssp             --------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             hcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcC
Confidence                                       24567789999999999999999999999999988764456999999999999


Q ss_pred             CHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcC
Q 013760          115 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG  182 (437)
Q Consensus       115 ~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~  182 (437)
                      +.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.|||+.|....
T Consensus       204 ~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          204 AASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRA-HGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTSSCHHHHHHHHH-TTCCCCCCC--------------
T ss_pred             CHHHHHHHHHcCCCC-cccccCCCCHHHHHHHcCCcHHHHHHHH-cCCCcCcCCCcccccccccCCcc
Confidence            999999999998886 8999999999999999999999999999 89999999999999999997644

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.98  E-value=2.2e-31  Score=259.03  Aligned_cols=192  Identities=26%  Similarity=0.303  Sum_probs=158.3

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcc--------------------------------cccCCCCCCcHHHHHHHcCCH
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNL--------------------------------VMTTDLSCSTALHTAAAQGHI   48 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~--------------------------------~~~~d~~g~TpLh~Aa~~g~~   48 (437)
                      +||||+|+..|+ .++|++|++.+.+.                                ++..|..|.||||+|+..|+.
T Consensus        60 ~TpLh~A~~~g~-~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~  138 (337)
T 4g8k_A           60 WTPLHNAVQMSR-EDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV  138 (337)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCH
T ss_pred             cCHHHHHHHcCC-HHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcH
Confidence            589999999999 99999999876432                                334677888899999999999


Q ss_pred             HHHHHHHhcCCchh---------HhhhcCCCcHHHHHHHcCCHHHHHHHHh-CCCCCC----------------------
Q 013760           49 DVVNFLLEIDSNLA---------KIARNNGKTVLHSAARMGHLEVVKALVS-KDPSTG----------------------   96 (437)
Q Consensus        49 ~iv~~Ll~~~~~~~---------~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~-~~~~~~----------------------   96 (437)
                      +++++|++.|+++.         ...+..|.||||+|+..|+.+++++|++ .+.+++                      
T Consensus       139 ~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~  218 (337)
T 4g8k_A          139 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV  218 (337)
T ss_dssp             HHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTH
T ss_pred             HHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccH
Confidence            99998888877652         2234568888888888888888888874 233322                      


Q ss_pred             --------------cccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCC
Q 013760           97 --------------FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI  162 (437)
Q Consensus        97 --------------~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~  162 (437)
                                    ..+|.+|+||||+|+..|+.++++.|++.....++.+|.+|+||||+|++.|+.+++++|++ .|+
T Consensus       219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GA  297 (337)
T 4g8k_A          219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGA  297 (337)
T ss_dssp             HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT-TSC
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCC
Confidence                          12467899999999999999999999987655569999999999999999999999999999 899


Q ss_pred             CccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCccc
Q 013760          163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSK  199 (437)
Q Consensus       163 ~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~  199 (437)
                      |+|.+     +|||+|+..++.+++++|+++||+++.
T Consensus       298 d~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          298 STDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             SSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred             CCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence            98764     699999999999999999999998764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=4.4e-33  Score=260.81  Aligned_cols=193  Identities=24%  Similarity=0.279  Sum_probs=168.0

Q ss_pred             chhhHHHHcCCcHHHHHHHHh----hCCcccc---cCCCCCCcHHHHHH---HcCCHHHHHHHHhcCCchh---------
Q 013760            2 DMIHFMWQQSRVILVLKELLG----EFPNLVM---TTDLSCSTALHTAA---AQGHIDVVNFLLEIDSNLA---------   62 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~----~~~~~~~---~~d~~g~TpLh~Aa---~~g~~~iv~~Ll~~~~~~~---------   62 (437)
                      |+||.|++.|+ .+.++.|++    .+.++..   ..|.+|.||||+|+   ..|+.+++++|++.|++..         
T Consensus         7 ~~L~~A~~~g~-~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~   85 (260)
T 3jxi_A            7 PILFDIVSRGS-PDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSP   85 (260)
T ss_dssp             HHHHHHHHHTC-GGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCC
T ss_pred             HHHHHHHHhCC-HHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccc
Confidence            69999999999 996666665    6655431   23578999999999   7799999999999875421         


Q ss_pred             -HhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccC--------------CCCCcHHHHHHhCCCHHHHHHhhc---
Q 013760           63 -KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTD--------------KKGQTALHMAVKGQNEDIVLELIR---  124 (437)
Q Consensus        63 -~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~g~~~iv~~Ll~---  124 (437)
                       ...|.+|.||||+|+..|+.+++++|++.+++++.. |              ..|.||||+|+..|+.+++++|++   
T Consensus        86 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  164 (260)
T 3jxi_A           86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ-ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH  164 (260)
T ss_dssp             BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc-ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence             223448999999999999999999999999998765 5              579999999999999999999999   


Q ss_pred             CCCCccccCCCCCChHHHHHHHcCc---------HHHHHHhhcccCCCc-------cccccCCCCHHHHHHHcCcHHHHH
Q 013760          125 PDPSVLKLEDNKGNTALHIAIKKGR---------TQIVRCLLSIEGIDV-------NSLNKAGESPLDVAEKLGNTELFS  188 (437)
Q Consensus       125 ~~~~~~~~~d~~G~TpLh~A~~~g~---------~~iv~~Ll~~~g~~~-------n~~n~~G~T~L~~A~~~~~~~i~~  188 (437)
                      .+.++ +.+|.+|+||||+|+..++         .+++++|++ .|+++       +.+|..|.||||+|+..|+.++++
T Consensus       165 ~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~  242 (260)
T 3jxi_A          165 KQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ  242 (260)
T ss_dssp             CCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccccchhhcccCCCCCHHHHHHHcCCHHHHH
Confidence            77776 8999999999999998887         799999999 89998       789999999999999999999999


Q ss_pred             HHHHcCCCcc
Q 013760          189 LLKEAGAAHS  198 (437)
Q Consensus       189 ~L~~~ga~~~  198 (437)
                      +|+++|++..
T Consensus       243 ~Ll~~g~~~~  252 (260)
T 3jxi_A          243 HIIRREIADA  252 (260)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHhCCCcc
Confidence            9999998654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.98  E-value=2e-32  Score=259.41  Aligned_cols=191  Identities=24%  Similarity=0.319  Sum_probs=176.1

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCc-ccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHH---
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPN-LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAA---   77 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~-~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa---   77 (437)
                      +++|.|+..|+ ++.++.+++...+ .++..|.+|.||||+|+..|+.+++++|++.|+...+..|..|.||||+|+   
T Consensus        78 ~~l~~a~~~~~-~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A           78 SDAHPELVRRH-LVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT  156 (276)
T ss_dssp             TTCCHHHHHHH-HHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred             cCCCHHHHHHH-HHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence            68899999999 9999999987654 356789999999999999999999999999998444788999999999999   


Q ss_pred             --HcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHH
Q 013760           78 --RMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC  155 (437)
Q Consensus        78 --~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~  155 (437)
                        ..|+.++++.|++.+.+... .|..|+||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++
T Consensus       157 ~~~~~~~~~v~~Ll~~g~~~~~-~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~  234 (276)
T 4hbd_A          157 LKTQDDIETVLQLFRLGNINAK-ASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGL  234 (276)
T ss_dssp             CCSHHHHHHHHHHHHHSCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             hhhhhhHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHH
Confidence              66889999999999977654 4889999999999999999999999999886 8999999999999999999999999


Q ss_pred             hhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 013760          156 LLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA  195 (437)
Q Consensus       156 Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga  195 (437)
                      |++..|++++.+|..|.||||+|+..|+.+++++|++++.
T Consensus       235 Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          235 LLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             HHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            9987899999999999999999999999999999998753

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=1.5e-31  Score=234.56  Aligned_cols=168  Identities=27%  Similarity=0.309  Sum_probs=107.6

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      ||||.|+..|+ .++++.|++.+++..+..|..|.||||+|+..|+.+++++|++.|+++ +..|.+|.||||+|+..|+
T Consensus         4 ~~L~~A~~~g~-~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            4 LSIHQLAAQGE-LDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGGY   81 (172)
T ss_dssp             CCHHHHHHTTC-HHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTC
T ss_pred             hhHHHHHHcCC-HHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCCC
Confidence            56677777777 777777776666655666666777777777777777777777666665 4556666667777776666


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccC
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG  161 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  161 (437)
                      .+++++|++.+.+.... |..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .+
T Consensus        82 ~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~-~~  158 (172)
T 3v30_A           82 TDIVGLLLERDVDINIY-DWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIEN-HI  158 (172)
T ss_dssp             HHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-HH
T ss_pred             HHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHHHHHH-HH
Confidence            66666666666665533 666666666666666666666666666554 5666666666666666666666666666 56


Q ss_pred             CCccccccCCCCH
Q 013760          162 IDVNSLNKAGESP  174 (437)
Q Consensus       162 ~~~n~~n~~G~T~  174 (437)
                      +++...|..|.||
T Consensus       159 ~~~~~~~~~~~~p  171 (172)
T 3v30_A          159 LKLFQSNLVPADP  171 (172)
T ss_dssp             HHHSCC-------
T ss_pred             HHHhcccCCCCCC
Confidence            6666666666655

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=3.2e-31  Score=236.80  Aligned_cols=164  Identities=25%  Similarity=0.296  Sum_probs=154.6

Q ss_pred             ccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcH
Q 013760           27 LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTA  106 (437)
Q Consensus        27 ~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~  106 (437)
                      +.+.+|..|.||||+|+..|+.+++++|++.++++ +..|.+|.||||+|+..|+.+++++|++.++++... |..|.||
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~  104 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK-DFSGKTP  104 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTSCCH
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCcH
Confidence            34568999999999999999999999999999887 678889999999999999999999999999988754 8999999


Q ss_pred             HHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHH
Q 013760          107 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL  186 (437)
Q Consensus       107 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i  186 (437)
                      ||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.++
T Consensus       105 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~  182 (192)
T 2rfm_A          105 LMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLE-LGADISARDLTGLTAEASARIFGRQEV  182 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCcHHH
Confidence            99999999999999999998876 8899999999999999999999999999 799999999999999999999999999


Q ss_pred             HHHHHHcC
Q 013760          187 FSLLKEAG  194 (437)
Q Consensus       187 ~~~L~~~g  194 (437)
                      +++|+++|
T Consensus       183 v~~Ll~~~  190 (192)
T 2rfm_A          183 IKIFTEVR  190 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcc
Confidence            99999865

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=7.5e-31  Score=230.09  Aligned_cols=167  Identities=27%  Similarity=0.359  Sum_probs=153.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCC
Q 013760           35 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ  114 (437)
Q Consensus        35 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g  114 (437)
                      +.||||.|+..|+.++++.|++.+++..+..|.+|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL-AKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhh-cccCCCHHHHHHHCC
Confidence            5789999999999999999999999877888999999999999999999999999999998754 899999999999999


Q ss_pred             CHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcC
Q 013760          115 NEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG  194 (437)
Q Consensus       115 ~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~g  194 (437)
                      +.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|
T Consensus        81 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           81 YTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            999999999998886 8899999999999999999999999999 89999999999999999999999999999999999


Q ss_pred             CCcccCCCCC
Q 013760          195 AAHSKDHGKP  204 (437)
Q Consensus       195 a~~~~~~~~~  204 (437)
                      ++....+..+
T Consensus       159 ~~~~~~~~~~  168 (172)
T 3v30_A          159 LKLFQSNLVP  168 (172)
T ss_dssp             HHHSCC----
T ss_pred             HHHhcccCCC
Confidence            8876554443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=3.2e-31  Score=252.98  Aligned_cols=188  Identities=26%  Similarity=0.334  Sum_probs=164.9

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +||||.|+..|+ .+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++ +..|.+|.||||+|+..|
T Consensus        74 ~t~L~~A~~~g~-~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~  150 (299)
T 1s70_B           74 LTALHQACIDDN-VDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEA  150 (299)
T ss_dssp             CBHHHHHHHTTC-HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHH
T ss_pred             CCHHHHHHHcCC-HHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcc
Confidence            589999999999 9999999998876 4578999999999999999999999999999987 678999999999999999


Q ss_pred             CHHHHHHHHhCC--------------------------CCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCC
Q 013760           81 HLEVVKALVSKD--------------------------PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLED  134 (437)
Q Consensus        81 ~~~iv~~Ll~~~--------------------------~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d  134 (437)
                      +.++++.++...                          .......+..|.||||+|+..|+.+++++|++.+.++ +.+|
T Consensus       151 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d  229 (299)
T 1s70_B          151 MEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKD  229 (299)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCC
T ss_pred             hHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcC
Confidence            999998776532                          2222335678999999999999999999999998876 8999


Q ss_pred             CCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHc
Q 013760          135 NKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  193 (437)
Q Consensus       135 ~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~  193 (437)
                      .+|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|.+.....+.+++.+.
T Consensus       230 ~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~~~~~l~~l~~~~  287 (299)
T 1s70_B          230 YDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQ  287 (299)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTTTSCCSGGGHHHHHHHHHT
T ss_pred             CCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999 8999999999999999999765444444444443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=1.6e-30  Score=226.87  Aligned_cols=160  Identities=25%  Similarity=0.287  Sum_probs=139.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhC
Q 013760           34 SCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG  113 (437)
Q Consensus        34 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  113 (437)
                      +|.||||.|+..|+.++++.|++.+.++ +.+|.+|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHc
Confidence            5788999999999999999999888775 667888999999999999999999999988887654 88889999999999


Q ss_pred             CCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHc
Q 013760          114 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  193 (437)
Q Consensus       114 g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~  193 (437)
                      |+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++
T Consensus        80 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A           80 GYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             TCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence            9999999999888776 7888899999999999999999999998 7899999999999999999999999999999887


Q ss_pred             CCCc
Q 013760          194 GAAH  197 (437)
Q Consensus       194 ga~~  197 (437)
                      +++.
T Consensus       158 ~~~~  161 (167)
T 3v31_A          158 LLKL  161 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=7.5e-31  Score=249.72  Aligned_cols=187  Identities=19%  Similarity=0.179  Sum_probs=170.3

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCC-CcHHHHHHHc
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNG-KTVLHSAARM   79 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G-~tpLh~Aa~~   79 (437)
                      +||||.|+..|+ .+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++ +..|..| .||||+|+..
T Consensus        63 ~t~L~~A~~~g~-~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~  139 (285)
T 3kea_A           63 EFPLHQAATLED-TKIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVML  139 (285)
T ss_dssp             CCHHHHHTTSSS-CHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHT
T ss_pred             CCHHHHHHHcCC-HHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHc
Confidence            589999999999 9999999999877 4568999999999999999999999999999987 6788888 7999999999


Q ss_pred             CCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChH-HHHHHHcCcHHHHHHhhc
Q 013760           80 GHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA-LHIAIKKGRTQIVRCLLS  158 (437)
Q Consensus        80 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~Tp-Lh~A~~~g~~~iv~~Ll~  158 (437)
                      |+.+++++|++.+++...  ...|.||||+|+..|+.+++++|++.+.++ +.+|.+|+|| ||+|+..|+.+++++|++
T Consensus       140 ~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~  216 (285)
T 3kea_A          140 NDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFK  216 (285)
T ss_dssp             TCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCHHHHHHHHHHHHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTT
T ss_pred             CCHHHHHHHHhCCCcccc--ccCCccHHHHHHHcChHHHHHHHHHcCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHH
Confidence            999999999999988732  238999999999999999999999998776 8899999998 999999999999999999


Q ss_pred             ccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCC
Q 013760          159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDH  201 (437)
Q Consensus       159 ~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~  201 (437)
                       .|++++..|.       .|+..++.+++++|+++|++.....
T Consensus       217 -~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~~~~  251 (285)
T 3kea_A          217 -YDINIYSANL-------ENVLLDDAEIAKMIIEKHVEYKSDS  251 (285)
T ss_dssp             -SCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHTTCT
T ss_pred             -cCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCCCcc
Confidence             8999999884       4567899999999999998875543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=5.8e-30  Score=224.05  Aligned_cols=161  Identities=31%  Similarity=0.426  Sum_probs=146.0

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHH
Q 013760           30 TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHM  109 (437)
Q Consensus        30 ~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~  109 (437)
                      .....+.||||.|+..|+.+++++|++.|.++ +.+|.+|.||||+|+..|+.+++++|++.+.+.... |..|.||||+
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~   86 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRL   86 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHH
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHH
Confidence            34567789999999999999999999999887 678889999999999999999999999999887754 8899999999


Q ss_pred             HHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHH
Q 013760          110 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL  189 (437)
Q Consensus       110 A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~  189 (437)
                      |+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++
T Consensus        87 A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~  164 (169)
T 2y1l_E           87 AALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEI  164 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHHHHHH
Confidence            99999999999999998876 8899999999999999999999999999 799999999999999999999999999999


Q ss_pred             HHHcC
Q 013760          190 LKEAG  194 (437)
Q Consensus       190 L~~~g  194 (437)
                      |++.|
T Consensus       165 L~~~G  169 (169)
T 2y1l_E          165 LQKLN  169 (169)
T ss_dssp             HHTC-
T ss_pred             HHHcC
Confidence            99876

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=2.7e-30  Score=223.97  Aligned_cols=158  Identities=28%  Similarity=0.471  Sum_probs=130.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhC
Q 013760           34 SCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG  113 (437)
Q Consensus        34 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  113 (437)
                      ...||||.|+..|+.+++++|++.+.++ +..|.+|.||||+|+. |+.+++++|++.++++... |..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK-DRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHc
Confidence            5678888888888888888888888776 6677888888888888 8888888888888877644 78888888888888


Q ss_pred             CCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCC-ccccccCCCCHHHHHHHcCcHHHHHHHHH
Q 013760          114 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID-VNSLNKAGESPLDVAEKLGNTELFSLLKE  192 (437)
Q Consensus       114 g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~-~n~~n~~G~T~L~~A~~~~~~~i~~~L~~  192 (437)
                      |+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|++ ++..|..|.||||+|+..++.+++++|++
T Consensus        81 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  158 (162)
T 1ihb_A           81 GFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVK-HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA  158 (162)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-ccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            8888888888887665 7788888888888888888888888888 5666 68888888888888888888888888888


Q ss_pred             cCCC
Q 013760          193 AGAA  196 (437)
Q Consensus       193 ~ga~  196 (437)
                      +|++
T Consensus       159 ~GAd  162 (162)
T 1ihb_A          159 NGAG  162 (162)
T ss_dssp             TC--
T ss_pred             hCCC
Confidence            8874

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=1.6e-29  Score=232.36  Aligned_cols=175  Identities=26%  Similarity=0.306  Sum_probs=155.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhc-CCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCC----cccCCCCCcHHH
Q 013760           34 SCSTALHTAAAQGHIDVVNFLLEI-DSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG----FRTDKKGQTALH  108 (437)
Q Consensus        34 ~g~TpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~----~~~d~~g~t~Lh  108 (437)
                      .|.||||+|+..|+.++++.|++. +.++ +.+|.+|.||||+|+..|+.+++++|++.+++..    ...|.+|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            589999999999999999999998 7776 7789999999999999999999999999988753    234779999999


Q ss_pred             HHHhCCCHHHHHHhhcCCCCccccCCC-------------CCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHH
Q 013760          109 MAVKGQNEDIVLELIRPDPSVLKLEDN-------------KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL  175 (437)
Q Consensus       109 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~-------------~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L  175 (437)
                      +|+..|+.+++++|++.+.++ +.++.             +|+||||+|+..|+.+++++|++ .|+++|.+|..|.|||
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t~L  158 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE-HGADIRAQDSLGNTVL  158 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHH
Confidence            999999999999999998776 55544             79999999999999999999999 7999999999999999


Q ss_pred             HHHHHcCcHHHH----HHHHHcCCCcc------cCCCCCCChHHHH
Q 013760          176 DVAEKLGNTELF----SLLKEAGAAHS------KDHGKPPSATKQL  211 (437)
Q Consensus       176 ~~A~~~~~~~i~----~~L~~~ga~~~------~~~~~~~~~~~~~  211 (437)
                      |+|+..++.+++    ++|+++|++..      ..+..+.++....
T Consensus       159 ~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A  204 (232)
T 2rfa_A          159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA  204 (232)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHH
Confidence            999999999988    99999999873      5556666665544

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=4.1e-30  Score=222.80  Aligned_cols=156  Identities=24%  Similarity=0.330  Sum_probs=145.2

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      ||||.|+..|+ .++++.|++.+++. +..|..|.||||+|+. |+.+++++|++.|+++ +.+|..|.||||+|+..|+
T Consensus         7 ~~L~~A~~~g~-~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            7 NELASAAARGD-LEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             HHHHHHHHHTC-HHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             hHHHHHHHcCC-HHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCC
Confidence            69999999999 99999999988764 5789999999999999 9999999999999987 6789999999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccC
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG  161 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  161 (437)
                      .+++++|++.++++... |.+|.||||+|+..|+.+++++|++.+++.++.+|.+|+||||+|+..|+.+++++|++ .|
T Consensus        83 ~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~G  160 (162)
T 1ihb_A           83 LDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA-NG  160 (162)
T ss_dssp             HHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TC
T ss_pred             HHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH-hC
Confidence            99999999999988754 89999999999999999999999999998779999999999999999999999999999 77


Q ss_pred             CC
Q 013760          162 ID  163 (437)
Q Consensus       162 ~~  163 (437)
                      +|
T Consensus       161 Ad  162 (162)
T 1ihb_A          161 AG  162 (162)
T ss_dssp             --
T ss_pred             CC
Confidence            64

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=7.7e-30  Score=225.33  Aligned_cols=165  Identities=25%  Similarity=0.318  Sum_probs=124.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhC
Q 013760           34 SCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG  113 (437)
Q Consensus        34 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  113 (437)
                      ++.+|||.|+..|+.++++.|++.+....+..|.+|.||||+|+..|+.+++++|++.+.++... |..|.||||+|+..
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM-NRGDDTPLHLAASH   82 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHc
Confidence            56677788888888888887777755544667777778888888888888888887777776643 77778888888888


Q ss_pred             CCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHc
Q 013760          114 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  193 (437)
Q Consensus       114 g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~  193 (437)
                      |+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..++.+++++|+++
T Consensus        83 ~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~  160 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAEKM  160 (179)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            8888888888777665 7777788888888888888888888887 6788888888888888888887888888888888


Q ss_pred             CCCcccCC
Q 013760          194 GAAHSKDH  201 (437)
Q Consensus       194 ga~~~~~~  201 (437)
                      |++.....
T Consensus       161 g~~~~~~~  168 (179)
T 3f6q_A          161 GQNLNRIP  168 (179)
T ss_dssp             TCCCSCBC
T ss_pred             hcCcccCC
Confidence            87775543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=3.8e-30  Score=223.99  Aligned_cols=161  Identities=28%  Similarity=0.374  Sum_probs=142.8

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHH
Q 013760           31 TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA  110 (437)
Q Consensus        31 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  110 (437)
                      .|.+|.||||.|+..|+.++++.|++.+.......+..|.||||+|+..|+.+++++|++.++++... |.+|.||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCcc-CCCCCCHHHHH
Confidence            46788999999999999999999998766554667788999999999999999999999999888754 88999999999


Q ss_pred             HhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHH
Q 013760          111 VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL  190 (437)
Q Consensus       111 ~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L  190 (437)
                      +..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|.. ++.+++++|
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L  159 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GDTDIQDLL  159 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred             HHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCChhHhHhc-CChHHHHHH
Confidence            9999999999999998876 8899999999999999999999999999 799999999999999999776 889999999


Q ss_pred             HHcCC
Q 013760          191 KEAGA  195 (437)
Q Consensus       191 ~~~ga  195 (437)
                      ++.|+
T Consensus       160 ~~~gA  164 (165)
T 3twr_A          160 RGDAA  164 (165)
T ss_dssp             HTC--
T ss_pred             hhccc
Confidence            98876

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=5.4e-29  Score=223.49  Aligned_cols=180  Identities=22%  Similarity=0.230  Sum_probs=162.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHH
Q 013760           32 DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV  111 (437)
Q Consensus        32 d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  111 (437)
                      +..+.||||.|+..|+.+.++.|++.+....+..|.+|.||||+|+..|+.+++++|++.++++... |..|.||||+|+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~   80 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYAG   80 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHH
Confidence            3578999999999999999999999988444778999999999999999999999999999998754 899999999999


Q ss_pred             hCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCc-----HHH
Q 013760          112 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGN-----TEL  186 (437)
Q Consensus       112 ~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~-----~~i  186 (437)
                      ..|+.+++++|++.++..++.+|.+|+||||.|+..|+.+++++|++..+++++.+|..|.||||+|+..++     .++
T Consensus        81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~  160 (201)
T 3hra_A           81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI  160 (201)
T ss_dssp             HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred             HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence            999999999999766655689999999999999999999999999994449999999999999999999988     999


Q ss_pred             HHHHHHcCCCcccCCCCCCChHHHHH
Q 013760          187 FSLLKEAGAAHSKDHGKPPSATKQLK  212 (437)
Q Consensus       187 ~~~L~~~ga~~~~~~~~~~~~~~~~~  212 (437)
                      +++|+++|++.+..+..+.++.....
T Consensus       161 v~~Ll~~ga~~~~~~~~g~t~l~~A~  186 (201)
T 3hra_A          161 VKLLMENGADQSIKDNSGRTAMDYAN  186 (201)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHCCCCCCccCCCCCCHHHHHH
Confidence            99999999999888888777765543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=1.3e-29  Score=223.79  Aligned_cols=166  Identities=20%  Similarity=0.244  Sum_probs=156.1

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +++||.|+..|+ .++++.|++.++...+..|..|.||||+|+..|+.+++++|++.|+++ +..|.+|.||||+|+..|
T Consensus         6 ~~~l~~A~~~g~-~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            6 MDDIFTQCREGN-AVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             -CCHHHHHHHTC-HHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHcCC-HHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcC
Confidence            479999999999 999999999988878889999999999999999999999999999987 678999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhccc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  160 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  160 (437)
                      +.+++++|++.+++++.. |..|.||||+|+..|+.+++++|++.+.++ +.+|.+|.||||+|+..++.+++++|++ .
T Consensus        84 ~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~L~~-~  160 (179)
T 3f6q_A           84 HRDIVQKLLQYKADINAV-NEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAEK-M  160 (179)
T ss_dssp             CHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHHHHHHHHH-T
T ss_pred             CHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHHHHHHHHH-h
Confidence            999999999999998754 899999999999999999999999999886 8899999999999999999999999999 8


Q ss_pred             CCCccccccCC
Q 013760          161 GIDVNSLNKAG  171 (437)
Q Consensus       161 g~~~n~~n~~G  171 (437)
                      |++++..+..+
T Consensus       161 g~~~~~~~~~~  171 (179)
T 3f6q_A          161 GQNLNRIPYKD  171 (179)
T ss_dssp             TCCCSCBCCCC
T ss_pred             hcCcccCCccc
Confidence            99999887665

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=2.4e-30  Score=238.78  Aligned_cols=179  Identities=27%  Similarity=0.293  Sum_probs=157.7

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCc---hhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcH
Q 013760           30 TTDLSCSTALHTAAAQGHIDVVNFLLEIDSN---LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTA  106 (437)
Q Consensus        30 ~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~---~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~  106 (437)
                      .+|.+|.||||+|+..|+.++++.|++.+..   ..+..|..|.||||+|+..|+.+++++|++.++++... |..|.||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~   81 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTP   81 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCC-CTTCCCH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCH
Confidence            4788999999999999999999999998763   23678889999999999999999999999999988754 8999999


Q ss_pred             HHHHHhCCCHHHHHHhhcCCCC-----ccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCcccccc-CCCCHHHHHHH
Q 013760          107 LHMAVKGQNEDIVLELIRPDPS-----VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK-AGESPLDVAEK  180 (437)
Q Consensus       107 Lh~A~~~g~~~iv~~Ll~~~~~-----~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~-~G~T~L~~A~~  180 (437)
                      ||+|+..|+.+++++|++.+.+     .++..|.+|+||||+|+..|+.+++++|++ .|++++.++. .|.||||+|+.
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~  160 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVD  160 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCCHHHHHHH
Confidence            9999999999999999998753     357889999999999999999999999999 8999999998 99999999999


Q ss_pred             cCcHHHHHHHHHcCCCcccCCCCCCChHHH
Q 013760          181 LGNTELFSLLKEAGAAHSKDHGKPPSATKQ  210 (437)
Q Consensus       181 ~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~  210 (437)
                      .++.+++++|+++|++....+..+.++...
T Consensus       161 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~  190 (236)
T 1ikn_D          161 LQNPDLVSLLLKCGADVNRVTYQGYSPYQL  190 (236)
T ss_dssp             TTCHHHHHHHHTTTCCSCCCCTTCCCGGGG
T ss_pred             cCCHHHHHHHHHcCCCCCcccCCCCCHHHH
Confidence            999999999999999998887777776543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=3.1e-29  Score=215.61  Aligned_cols=150  Identities=29%  Similarity=0.389  Sum_probs=103.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCC
Q 013760           36 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN  115 (437)
Q Consensus        36 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~  115 (437)
                      .||||.|+..|+.+++++|++.|++..  .|..|.||||+|+..|+.+++++|++.++++... |..|+||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR-TKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCh
Confidence            466777777777777777776666542  4566677777777777777777777766665533 6667777777777777


Q ss_pred             HHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHH
Q 013760          116 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL  190 (437)
Q Consensus       116 ~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L  190 (437)
                      .+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            77777777766554 6667777777777777777777777776 5777777777777777777777777777665

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=3.9e-29  Score=217.99  Aligned_cols=157  Identities=24%  Similarity=0.289  Sum_probs=146.0

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      .||||.|+..|+ .++++.|++.+.+ .+..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|
T Consensus         4 ~t~L~~A~~~g~-~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            4 SLSVHQLAAQGE-MLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKG   80 (167)
T ss_dssp             CCCHHHHHHTTC-HHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             cchHHHHHHCCC-HHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcC
Confidence            489999999999 9999999999765 5678999999999999999999999999999887 678899999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhccc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  160 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  160 (437)
                      +.+++++|++.++++... |..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .
T Consensus        81 ~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~-~  157 (167)
T 3v31_A           81 YTDIVKMLLDCGVDVNEY-DWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIES-H  157 (167)
T ss_dssp             CHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH-H
T ss_pred             CHHHHHHHHHCCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH-H
Confidence            999999999999998754 899999999999999999999999998876 8899999999999999999999999998 4


Q ss_pred             CCC
Q 013760          161 GID  163 (437)
Q Consensus       161 g~~  163 (437)
                      +.+
T Consensus       158 ~~~  160 (167)
T 3v31_A          158 LLK  160 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=8.5e-29  Score=216.61  Aligned_cols=152  Identities=29%  Similarity=0.391  Sum_probs=143.4

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      |+||.|++.|+ .+++++|++.+.+ .+..|.+|.||||+|+..|+.+++++|++.|+++ +..|.+|.||||+|+..|+
T Consensus        16 ~~l~~A~~~g~-~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~   92 (169)
T 2y1l_E           16 KKLLEAARAGR-DDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALFGH   92 (169)
T ss_dssp             HHHHHHHHHTC-HHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             chHHHHHHcCC-HHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCC
Confidence            68999999999 9999999999876 4578999999999999999999999999999887 6788999999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhc
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  158 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  158 (437)
                      .+++++|++.+++.... |.+|.||||+|+..|+.+++++|++.+.++ +.+|.+|.||||+|+..|+.+++++|++
T Consensus        93 ~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E           93 LEIVEVLLKNGADVNAN-DMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             HHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            99999999999998754 899999999999999999999999999886 8899999999999999999999999997

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=8.8e-29  Score=212.76  Aligned_cols=149  Identities=24%  Similarity=0.300  Sum_probs=140.3

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      |+||.|+..|+ .+++++|++.+++..  .|..|.||||+|+..|+.+++++|++.|+++ +..|.+|.||||+|+..|+
T Consensus         4 ~~L~~A~~~g~-~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            4 KKLLEAARAGQ-DDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHTC-HHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCC-HHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCh
Confidence            69999999999 999999999988653  6889999999999999999999999999987 6788999999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHh
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL  156 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L  156 (437)
                      .+++++|++.++++... |..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999998754 899999999999999999999999998876 88999999999999999999999987

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=8.9e-29  Score=220.91  Aligned_cols=154  Identities=23%  Similarity=0.242  Sum_probs=144.5

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +||||.|+..|+ .+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.|+++ +..|.+|.||||+|+..|
T Consensus        36 ~t~L~~A~~~g~-~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~  112 (192)
T 2rfm_A           36 RTPLMVACMLGM-ENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFG  112 (192)
T ss_dssp             CCHHHHHHHHTC-GGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred             CCHHHHHHHcCC-HHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcC
Confidence            589999999999 9999999999776 4578899999999999999999999999999987 678899999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI  159 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  159 (437)
                      +.+++++|++.++++... |..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++.
T Consensus       113 ~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          113 YSEMSYFLLEHGANVNDR-NLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             CHHHHHHHHHTTCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence            999999999999998754 899999999999999999999999998876 88999999999999999999999999983

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=1.2e-29  Score=246.31  Aligned_cols=194  Identities=16%  Similarity=0.173  Sum_probs=157.4

Q ss_pred             hhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC--
Q 013760            4 IHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH--   81 (437)
Q Consensus         4 Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~--   81 (437)
                      +|.|+..+. .++++.|++.+.++....|.+|.||||+|+..|+.++|++|+++|+++ +.+|.+|+||||+|+..|+  
T Consensus       101 ~~~a~~~~~-~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~  178 (327)
T 1sw6_A          101 QHVSFDSLL-QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNY  178 (327)
T ss_dssp             ---CHHHHH-HHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHH
T ss_pred             hHHHHHhhH-HHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccc
Confidence            477777777 888888888776644338999999999999999999999999999998 6889999999999999998  


Q ss_pred             -HHHHHHHHhCCCCCCcccCCCCCcHHHHHHh----CCCHHHHHHhhcC--------------------CCCccccCCCC
Q 013760           82 -LEVVKALVSKDPSTGFRTDKKGQTALHMAVK----GQNEDIVLELIRP--------------------DPSVLKLEDNK  136 (437)
Q Consensus        82 -~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~g~~~iv~~Ll~~--------------------~~~~~~~~d~~  136 (437)
                       .++++.|++.+.......|..|+||||+|+.    .|+.++++.|++.                    +.+ ++.+|.+
T Consensus       179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~~~~~~~  257 (327)
T 1sw6_A          179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK-PNDKNGE  257 (327)
T ss_dssp             HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred             cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC-ccccccc
Confidence             6778888877633334569999999999999    9999999999876                    444 4889999


Q ss_pred             CChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHH
Q 013760          137 GNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATK  209 (437)
Q Consensus       137 G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~  209 (437)
                      |.||||.|+.      +++|++.   ++|.+|..|+||||+|+..|+.+++++|+++|++....+..+.++..
T Consensus       258 g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~  321 (327)
T 1sw6_A          258 RKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVD  321 (327)
T ss_dssp             --CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGG
T ss_pred             CCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            9999999986      8899983   69999999999999999999999999999999999888887777654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=1.3e-28  Score=211.98  Aligned_cols=152  Identities=26%  Similarity=0.402  Sum_probs=74.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCC
Q 013760           36 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN  115 (437)
Q Consensus        36 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~  115 (437)
                      .||||.|+..|+.++++.|++......+..|.+|.||||+ +..|+.+++++|++.++++... |..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTC
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCc
Confidence            3455555555555555555544111123344445555555 4445555555555554444322 4445555555555555


Q ss_pred             HHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHH
Q 013760          116 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  192 (437)
Q Consensus       116 ~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~  192 (437)
                      .+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ . ++++.+|..|.||||+|+..++.+++++|++
T Consensus        81 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           81 LDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA-E-SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHT-T-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHh-c-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            55555555544443 4445555555555555555555555554 2 4555555555555555555555555555543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=1.1e-29  Score=246.59  Aligned_cols=169  Identities=21%  Similarity=0.241  Sum_probs=142.2

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCC---HHHHHHHHhcCCchhHhhhcCCCcHHHHHH
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGH---IDVVNFLLEIDSNLAKIARNNGKTVLHSAA   77 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~---~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa   77 (437)
                      +||||+|+..|+ .++|++|++.+.+. +.+|.+|.||||+|+..|+   .++++.|++.+....+.+|.+|+||||+|+
T Consensus       132 ~TpLh~Aa~~g~-~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~  209 (327)
T 1sw6_A          132 NTPLHWLTSIAN-LELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHII  209 (327)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHH
T ss_pred             CcHHHHHHHcCC-HHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHH
Confidence            589999999999 99999999998774 5789999999999999999   788888888874445788999999999999


Q ss_pred             H----cCCHHHHHHHHhC--------------------CCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccC
Q 013760           78 R----MGHLEVVKALVSK--------------------DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLE  133 (437)
Q Consensus        78 ~----~g~~~iv~~Ll~~--------------------~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~  133 (437)
                      .    .|+.+++++|++.                    +.++.. .|..|.||||.|+.      +++|++.+   ++.+
T Consensus       210 ~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~-~~~~g~t~L~~a~~------~~~Ll~~~---~n~~  279 (327)
T 1sw6_A          210 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND-KNGERKDSILENLD------LKWIIANM---LNAQ  279 (327)
T ss_dssp             HHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHHT---TTCC
T ss_pred             HHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccc-ccccCCChhHHHHH------HHHHHHhC---CCCC
Confidence            9    9999999999987                    666654 48999999999996      88888873   5889


Q ss_pred             CCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcC
Q 013760          134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG  182 (437)
Q Consensus       134 d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~  182 (437)
                      |.+|+||||+|+..|+.+++++|++ .|+|++.+|..|+||||+|++.|
T Consensus       280 d~~G~TpLh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          280 DSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTCC--
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcC
Confidence            9999999999999999999999999 89999999999999999998654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=6.6e-29  Score=216.10  Aligned_cols=154  Identities=24%  Similarity=0.270  Sum_probs=143.6

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      ||||.|+..|+ .++++.|++..+......|..|.||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..|+
T Consensus        10 ~~l~~A~~~g~-~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~   87 (165)
T 3twr_A           10 RQLLEAAKAGD-VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGH   87 (165)
T ss_dssp             HHHHHHHHHTC-HHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHhCC-HHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHcCc
Confidence            79999999999 999999999887777788999999999999999999999999999987 6789999999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccC
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG  161 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  161 (437)
                      .+++++|++.+.++... |..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+. ++.+++++|++ .|
T Consensus        88 ~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~~~i~~~L~~-~g  163 (165)
T 3twr_A           88 YEVAELLVKHGAVVNVA-DLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GDTDIQDLLRG-DA  163 (165)
T ss_dssp             HHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TCHHHHHHHHT-C-
T ss_pred             HHHHHHHHhCCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CChHHHHHHhh-cc
Confidence            99999999999998754 899999999999999999999999998876 8999999999999877 89999999998 55

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=1.3e-28  Score=211.99  Aligned_cols=151  Identities=23%  Similarity=0.299  Sum_probs=141.2

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      ||||.|+..|+ .++++.|++..+...+..|..|.||||+ +..|+.+++++|++.|+++ +.+|.+|.||||+|+..|+
T Consensus         4 ~~L~~A~~~g~-~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            4 DRLSGAAARGD-VQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTC-HHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             hHHHHHHHhCC-HHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCc
Confidence            79999999999 9999999999555567889999999999 9999999999999999987 7789999999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhc
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  158 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  158 (437)
                      .+++++|++.++++... |.+|+||||+|+..|+.+++++|++. .++ +.+|.+|+||||+|+..|+.+++++|++
T Consensus        81 ~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            99999999999988754 89999999999999999999999998 554 8899999999999999999999999987

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=1e-28  Score=230.68  Aligned_cols=177  Identities=20%  Similarity=0.236  Sum_probs=155.4

Q ss_pred             CCcHHHHHHHcCCHH----HHHHHHhcCCchhH---hhhcCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCcc------
Q 013760           35 CSTALHTAAAQGHID----VVNFLLEIDSNLAK---IARNNGKTVLHSAARM---GHLEVVKALVSKDPSTGFR------   98 (437)
Q Consensus        35 g~TpLh~Aa~~g~~~----iv~~Ll~~~~~~~~---~~~~~G~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~------   98 (437)
                      |.||||.|+..|+.+    ++++|++.|.++..   ..|.+|.||||+|+..   |+.+++++|++.+++....      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            789999999999997    66777778888733   2789999999999999   9999999999987765422      


Q ss_pred             ----cCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCC-------------CChHHHHHHHcCcHHHHHHhhcc--
Q 013760           99 ----TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK-------------GNTALHIAIKKGRTQIVRCLLSI--  159 (437)
Q Consensus        99 ----~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~-------------G~TpLh~A~~~g~~~iv~~Ll~~--  159 (437)
                          .|..|.||||+|+..|+.+++++|++.+.++ +.+|..             |+||||+|+..|+.+++++|++.  
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                2467999999999999999999999998876 777776             99999999999999999999986  


Q ss_pred             cCCCccccccCCCCHHHHHHH--cCcHH-------HHHHHHHcCCCc-------ccCCCCCCChHHHHH
Q 013760          160 EGIDVNSLNKAGESPLDVAEK--LGNTE-------LFSLLKEAGAAH-------SKDHGKPPSATKQLK  212 (437)
Q Consensus       160 ~g~~~n~~n~~G~T~L~~A~~--~~~~~-------i~~~L~~~ga~~-------~~~~~~~~~~~~~~~  212 (437)
                      .|+++|.+|..|+||||+|+.  .++.+       ++++|+++|++.       +..+..+.++.....
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~  229 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAA  229 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHH
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHH
Confidence            799999999999999999999  78888       999999999998       667777777766543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.95  E-value=1.6e-28  Score=231.60  Aligned_cols=171  Identities=22%  Similarity=0.262  Sum_probs=140.2

Q ss_pred             CchhhHHHHc---CCcHHHHHHHHhhCCcc------c----ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhc
Q 013760            1 MDMIHFMWQQ---SRVILVLKELLGEFPNL------V----MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARN   67 (437)
Q Consensus         1 ~t~Lh~A~~~---g~~~~~vk~Ll~~~~~~------~----~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~   67 (437)
                      +||||.|+..   |+ .+++++|++.+.+.      +    ...|..|.||||+|+..|+.++|++|+++|+++ +..+.
T Consensus        55 ~tpL~~A~~~~~~g~-~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~  132 (273)
T 2pnn_A           55 KTCLLKAMLNLHNGQ-NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAAN  132 (273)
T ss_dssp             CCHHHHHHHSCBTTB-CHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBC
T ss_pred             CCHHHHHHHHHhcCC-hHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-Ccccc
Confidence            5899999987   99 99999999986431      1    225679999999999999999999999999987 55665


Q ss_pred             --------------CCCcHHHHHHHcCCHHHHHHHHh---CCCCCCcccCCCCCcHHHHHHhCCC---------HHHHHH
Q 013760           68 --------------NGKTVLHSAARMGHLEVVKALVS---KDPSTGFRTDKKGQTALHMAVKGQN---------EDIVLE  121 (437)
Q Consensus        68 --------------~G~tpLh~Aa~~g~~~iv~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~g~---------~~iv~~  121 (437)
                                    .|.||||+|+..|+.+++++|++   .+.+++. +|.+|+||||+|+..|+         .+++++
T Consensus       133 ~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~-~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~  211 (273)
T 2pnn_A          133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA-RDSVGNTVLHALVEVADNTVDNTKFVTSMYNE  211 (273)
T ss_dssp             SGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC-CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred             ccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCcee-eCCCCCcHHHHHHHccCcchhHHHHHHHHHHH
Confidence                          79999999999999999999999   8888875 49999999999999988         799999


Q ss_pred             hhcCCCCcc------ccCCCCCChHHHHHHHcCcHHHHHHhhcccCC-CccccccCCCCHH
Q 013760          122 LIRPDPSVL------KLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI-DVNSLNKAGESPL  175 (437)
Q Consensus       122 Ll~~~~~~~------~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~-~~n~~n~~G~T~L  175 (437)
                      |++.+.++.      +.+|.+|+||||+|+..|+.+++++|++ .|+ |+......+.+|-
T Consensus       212 Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          212 ILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ-REIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHTC-------------
T ss_pred             HHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHH-CCCCCchhhhhhhhhcc
Confidence            999887652      3589999999999999999999999999 677 7877777666653

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=5.6e-31  Score=242.58  Aligned_cols=180  Identities=20%  Similarity=0.150  Sum_probs=136.0

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      ||||.|+..|+ .++++.|++.+.+ ++..|.+|.||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..|+
T Consensus        23 t~L~~A~~~g~-~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g~   99 (229)
T 2vge_A           23 VLLLDAALTGE-LEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCND   99 (229)
T ss_dssp             HHHHHHHHHTC-HHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCC-HHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCC
Confidence            67888888888 8888888877665 3457778888888888888888888888887776 5677778888888888888


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHH--HhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcc
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMA--VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSI  159 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  159 (437)
                      .+++++|++.++++....+.+|+||||+|  +..|+.+++++|++.++++ +.+|..|.||+|.++..+..   ++|++ 
T Consensus       100 ~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~~l~~~~~~~~~---~~ll~-  174 (229)
T 2vge_A          100 TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSAEFGD---ELSFR-  174 (229)
T ss_dssp             HHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGGEEEESSCBCCSSTT---BCCBC-
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccCCchHHHHHHhhcccc---ccCcc-
Confidence            88888888888777765446788888888  7888888888888877665 66777777887765544332   45565 


Q ss_pred             cCCC--ccccccCCCCHHHHHHHcCcHHHHHH
Q 013760          160 EGID--VNSLNKAGESPLDVAEKLGNTELFSL  189 (437)
Q Consensus       160 ~g~~--~n~~n~~G~T~L~~A~~~~~~~i~~~  189 (437)
                      .|++  ++.+|..|.||||+|+..|+.++++.
T Consensus       175 ~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          175 EGESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             TTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             ccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence            5776  67788888888888888888776653

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=8.7e-28  Score=227.48  Aligned_cols=157  Identities=26%  Similarity=0.346  Sum_probs=145.2

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHH-----HcCCHHHHHHHHhcCCchhHhhhcCCCcHHHH
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAA-----AQGHIDVVNFLLEIDSNLAKIARNNGKTVLHS   75 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa-----~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~   75 (437)
                      +||||.|+..|+ .++++.|++.++...+..|..|.||||+|+     ..|+.++++.|++.|... ...|..|.||||+
T Consensus       112 ~T~Lh~A~~~g~-~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~  189 (276)
T 4hbd_A          112 NTALHYSVSHAN-FPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALML  189 (276)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHH
T ss_pred             CCHHHHHHHCCC-HHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHH
Confidence            589999999999 999999999998667789999999999999     678999999999999765 6678889999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhc-CCCCccccCCCCCChHHHHHHHcCcHHHHH
Q 013760           76 AARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR-PDPSVLKLEDNKGNTALHIAIKKGRTQIVR  154 (437)
Q Consensus        76 Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~  154 (437)
                      |+..|+.+++++|++.+++++.. |.+|+||||+|+..|+.+++++|++ .+.++ +.+|.+|+||||+|+..|+.++++
T Consensus       190 A~~~g~~~~v~~Ll~~gad~n~~-d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~TpL~~A~~~g~~~iv~  267 (276)
T 4hbd_A          190 AVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCACEHGHKEIAGLLLAVPSCDI-SLTDRDGSTALMVALDAGQSEIAS  267 (276)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHTSTTCCT-TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC-cCcCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999999999999998755 9999999999999999999999999 56665 899999999999999999999999


Q ss_pred             HhhcccC
Q 013760          155 CLLSIEG  161 (437)
Q Consensus       155 ~Ll~~~g  161 (437)
                      +|+++.+
T Consensus       268 ~Ll~~~~  274 (276)
T 4hbd_A          268 MLYSRMN  274 (276)
T ss_dssp             HHHHHCC
T ss_pred             HHHhccC
Confidence            9998544

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=1.4e-28  Score=227.87  Aligned_cols=158  Identities=18%  Similarity=0.197  Sum_probs=61.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhC
Q 013760           34 SCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG  113 (437)
Q Consensus        34 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  113 (437)
                      .|.||||.|++.|+.+.++.|+++|.++.  .+..|.||||.|+..|+.+++++|++.+++++.. |..|+||||+|+..
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNAVCA   80 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCC-CTTSCCHHHHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHc
Confidence            34555555555555555555555544441  1233445555555555555555555554444322 44455555555555


Q ss_pred             CCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCC-CHHHHH--HHcCcHHHHHHH
Q 013760          114 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGE-SPLDVA--EKLGNTELFSLL  190 (437)
Q Consensus       114 g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~-T~L~~A--~~~~~~~i~~~L  190 (437)
                      |+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|. ||||+|  +..|+.+++++|
T Consensus        81 g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L  158 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL  158 (239)
T ss_dssp             TCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             CCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcceecCCCCcchHHHHHHhhhccHHHHHHH
Confidence            5555555555444443 4445555555555555555555555554 4455555544443 555544  344445555555


Q ss_pred             HHcCCC
Q 013760          191 KEAGAA  196 (437)
Q Consensus       191 ~~~ga~  196 (437)
                      +++|++
T Consensus       159 l~~~a~  164 (239)
T 1ycs_B          159 YGVQEK  164 (239)
T ss_dssp             HHHHHH
T ss_pred             HHhhhc
Confidence            544443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=4.4e-28  Score=224.48  Aligned_cols=168  Identities=21%  Similarity=0.156  Sum_probs=126.2

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      .||||.|++.|+ .+.++.|++++.+..  .+..|.||||.|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..|
T Consensus         6 ~t~L~~a~~~~~-~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            6 QVSLPPGKRTNL-RKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHT
T ss_pred             cccCchhhhhhh-HHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcC
Confidence            489999999999 999999999987753  4578999999999999999999999999976 778999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCC-hHHHHH--HHcCcHHHHHHhh
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN-TALHIA--IKKGRTQIVRCLL  157 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~-TpLh~A--~~~g~~~iv~~Ll  157 (437)
                      +.+++++|++.+++++.. |.+|+||||+|+..|+.+++++|++.++++ +.+|.+|. ||||+|  +..|+.+++++|+
T Consensus        82 ~~~~v~~Ll~~ga~~~~~-d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll  159 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAA-DSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLY  159 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHHHHH
Confidence            999999999999998754 899999999999999999999999999887 77777776 999999  7889999999999


Q ss_pred             cccCCCccccccCCCCHH
Q 013760          158 SIEGIDVNSLNKAGESPL  175 (437)
Q Consensus       158 ~~~g~~~n~~n~~G~T~L  175 (437)
                      + .|++++..+..+.+++
T Consensus       160 ~-~~a~~~~~~~~~~~al  176 (239)
T 1ycs_B          160 G-VQEKMGIMNKGVIYAL  176 (239)
T ss_dssp             H-HHHHTTTTGGGEEEES
T ss_pred             H-hhhcccccccceEEEE
Confidence            9 8999998887766654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=9.6e-28  Score=224.41  Aligned_cols=160  Identities=21%  Similarity=0.205  Sum_probs=140.1

Q ss_pred             CchhhHHH---HcCCcHHHHHHHHhhCCc----------ccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhh-
Q 013760            1 MDMIHFMW---QQSRVILVLKELLGEFPN----------LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR-   66 (437)
Q Consensus         1 ~t~Lh~A~---~~g~~~~~vk~Ll~~~~~----------~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~-   66 (437)
                      +||||.|+   ..|+ .++++.|++.+.+          .....|..|.||||+|+..|+.++|++|++.|+++ +..+ 
T Consensus        47 ~t~L~~A~~~~~~g~-~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~  124 (260)
T 3jxi_A           47 KTCLPKALLNLSAGR-NDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQAR  124 (260)
T ss_dssp             CCHHHHHHTSCBTTB-CTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCE
T ss_pred             CcHHHHHHHHhhcCC-HHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-Ccccc
Confidence            58999999   7799 9999999997532          13345669999999999999999999999999987 5566 


Q ss_pred             -------------cCCCcHHHHHHHcCCHHHHHHHHh---CCCCCCcccCCCCCcHHHHHHhCCC---------HHHHHH
Q 013760           67 -------------NNGKTVLHSAARMGHLEVVKALVS---KDPSTGFRTDKKGQTALHMAVKGQN---------EDIVLE  121 (437)
Q Consensus        67 -------------~~G~tpLh~Aa~~g~~~iv~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~g~---------~~iv~~  121 (437)
                                   .+|.||||+|+..|+.+++++|++   .+.+++.. |.+|+||||+|+..++         .+++++
T Consensus       125 ~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~-d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~  203 (260)
T 3jxi_A          125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQ-DSRGNTVLHALVAIADNTRENTKFVTKMYDL  203 (260)
T ss_dssp             ECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred             ccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCccc-CCCCCcHHHHHHHhccCchhHHHHHHHHHHH
Confidence                         579999999999999999999999   88888754 9999999999998887         799999


Q ss_pred             hhcCCCCcc------ccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCc
Q 013760          122 LIRPDPSVL------KLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDV  164 (437)
Q Consensus       122 Ll~~~~~~~------~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~  164 (437)
                      |++.+.++.      +.+|.+|+||||+|+..|+.+++++|++ +|.+.
T Consensus       204 Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~g~~~  251 (260)
T 3jxi_A          204 LLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR-REIAD  251 (260)
T ss_dssp             HHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHHHH
T ss_pred             HHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHH-hCCCc
Confidence            999876642      6799999999999999999999999999 55443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=7.8e-27  Score=201.40  Aligned_cols=145  Identities=21%  Similarity=0.250  Sum_probs=115.3

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCc-HH
Q 013760           29 MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQT-AL  107 (437)
Q Consensus        29 ~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-~L  107 (437)
                      ...+..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+ .|+.+++++|++.+.++... |..|.| ||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~-d~~g~ttpL   82 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA-DPATLTRPV   82 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCC-CTTTCCCHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCc-CCCCCcHHH
Confidence            356788999999999999999999999999887 678889999999985 89999999999999888754 889999 99


Q ss_pred             HHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHH
Q 013760          108 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA  178 (437)
Q Consensus       108 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A  178 (437)
                      |+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||.+-+
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS-CC-----------------
T ss_pred             HHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccC
Confidence            9999999999999999998876 8899999999999999999999999999 8999999999999997754

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=3.2e-27  Score=210.29  Aligned_cols=158  Identities=12%  Similarity=0.105  Sum_probs=114.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCH----HHHHHHHhCCCCCCcccCCCCCcHHHHH
Q 013760           35 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL----EVVKALVSKDPSTGFRTDKKGQTALHMA  110 (437)
Q Consensus        35 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  110 (437)
                      +.++||.|++.|+.+.++.+++.+.+.  ..+..|+||||+|+.+|+.    +++++|++.|++++.. |.+|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~-d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSR-TKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCC-CTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCC-CCCCCcHHHHH
Confidence            456777777777777777777766543  1235677777777777764    4777777777777654 77777777777


Q ss_pred             HhCCC------HHHHHHhhcCCCCccccCCCCCC-hHHHHHHHcC-----cHHHHHHhhcccCCCccccccCCCCHHHHH
Q 013760          111 VKGQN------EDIVLELIRPDPSVLKLEDNKGN-TALHIAIKKG-----RTQIVRCLLSIEGIDVNSLNKAGESPLDVA  178 (437)
Q Consensus       111 ~~~g~------~~iv~~Ll~~~~~~~~~~d~~G~-TpLh~A~~~g-----~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A  178 (437)
                      +..++      .++++.|+++|+++ |.+|.+|+ ||||+|+..+     +.+++++|++..|+|++.+|..|.||||+|
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A  161 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV  161 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence            77765      46777888777766 77788887 8888887743     346778887756788888888888888888


Q ss_pred             HHcCcHHHHHHHHHcCCC
Q 013760          179 EKLGNTELFSLLKEAGAA  196 (437)
Q Consensus       179 ~~~~~~~i~~~L~~~ga~  196 (437)
                      ++.++.+++++|.+...+
T Consensus       162 ~~~~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          162 KRCQKPIALKMMEDYIKK  179 (186)
T ss_dssp             HTTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            888888888877766543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=6.6e-28  Score=222.00  Aligned_cols=185  Identities=18%  Similarity=0.184  Sum_probs=152.1

Q ss_pred             HHHHHhhCCc--ccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCC
Q 013760           17 LKELLGEFPN--LVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPS   94 (437)
Q Consensus        17 vk~Ll~~~~~--~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~   94 (437)
                      ++.|++++.+  .....+.+|.||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..|+.+++++|++.+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            4567777544  34566778899999999999999999999999987 67899999999999999999999999999999


Q ss_pred             CCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCC-CCCChHHHHH--HHcCcHHHHHHhhcccCCCccccccCC
Q 013760           95 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLED-NKGNTALHIA--IKKGRTQIVRCLLSIEGIDVNSLNKAG  171 (437)
Q Consensus        95 ~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~G~TpLh~A--~~~g~~~iv~~Ll~~~g~~~n~~n~~G  171 (437)
                      ++.. |..|+||||+|+..|+.+++++|++.+.++ +.+| .+|+||||+|  +..|+.+++++|++ .|++++..|..|
T Consensus        80 ~n~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~-~ga~~~~~~~~~  156 (229)
T 2vge_A           80 VNSP-DSHGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLAD-VEQSMGLMNSGA  156 (229)
T ss_dssp             TTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHH-HHHHTTTSGGGE
T ss_pred             CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHH-cCCCcccccCCc
Confidence            8754 899999999999999999999999999887 6665 6999999999  99999999999999 899999999999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCC--cccCCCCCCChH
Q 013760          172 ESPLDVAEKLGNTELFSLLKEAGAA--HSKDHGKPPSAT  208 (437)
Q Consensus       172 ~T~L~~A~~~~~~~i~~~L~~~ga~--~~~~~~~~~~~~  208 (437)
                      .||++.++....   .++|++.|++  ....+..+.++.
T Consensus       157 ~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL  192 (229)
T 2vge_A          157 VYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDW  192 (229)
T ss_dssp             EEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSE
T ss_pred             hHHHHHHhhccc---cccCccccccccccccCCCcccHH
Confidence            999986654443   2577788887  344444454443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=6.4e-27  Score=208.33  Aligned_cols=161  Identities=12%  Similarity=0.043  Sum_probs=140.9

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCH----HHHHHHHhcCCchhHhhhcCCCcHHHHH
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHI----DVVNFLLEIDSNLAKIARNNGKTVLHSA   76 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~----~iv~~Ll~~~~~~~~~~~~~G~tpLh~A   76 (437)
                      |++||.|++.|+ ++.++.+++.+++..  .|..|.||||+|+..|+.    +++++|+++|+++ +.+|.+|+||||+|
T Consensus         7 ~~~l~~Aa~~g~-~~~~~~l~~~~~~~~--~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a   82 (186)
T 3t8k_A            7 YRTVSAAAMLGT-YEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL   82 (186)
T ss_dssp             CSSHHHHHHHSC-HHHHHHHHHHSSSCH--HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred             ccHHHHHHHcCC-HHHHHHHHhcCcccc--cccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence            689999999999 999999999876532  236899999999999985    5999999999998 77899999999999


Q ss_pred             HHcCC------HHHHHHHHhCCCCCCcccCCCCC-cHHHHHHhCCC-----HHHHHHhhc-CCCCccccCCCCCChHHHH
Q 013760           77 ARMGH------LEVVKALVSKDPSTGFRTDKKGQ-TALHMAVKGQN-----EDIVLELIR-PDPSVLKLEDNKGNTALHI  143 (437)
Q Consensus        77 a~~g~------~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~g~-----~~iv~~Ll~-~~~~~~~~~d~~G~TpLh~  143 (437)
                      +..|+      .+++++|+++|++++.. |..|+ ||||+|+..+.     .+++++|++ .|.++ +.+|.+|+||||+
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~~-d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL~~  160 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALEF  160 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCSSSC-BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCCCCcc-CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHHHH
Confidence            99997      68899999999999865 99999 99999999553     568999999 78776 9999999999999


Q ss_pred             HHHcCcHHHHHHhhcccCCCccccc
Q 013760          144 AIKKGRTQIVRCLLSIEGIDVNSLN  168 (437)
Q Consensus       144 A~~~g~~~iv~~Ll~~~g~~~n~~n  168 (437)
                      |++.|+.+++++|.+ ...+.+.++
T Consensus       161 A~~~~~~~~v~~L~~-~~~~~~~~~  184 (186)
T 3t8k_A          161 VKRCQKPIALKMMED-YIKKYNLKE  184 (186)
T ss_dssp             HHTTTCHHHHHHHHH-HHHHHTCCC
T ss_pred             HHHcCCHHHHHHHHH-HHHHHhccc
Confidence            999999999999997 444555544

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=5.5e-26  Score=191.37  Aligned_cols=129  Identities=18%  Similarity=0.273  Sum_probs=75.3

Q ss_pred             hhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCC-CChHHH
Q 013760           64 IARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK-GNTALH  142 (437)
Q Consensus        64 ~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~-G~TpLh  142 (437)
                      ..|.+|.||||+|+..|+.+++++|++.+.++... |..|+||||+|+. |+.+++++|++.+.++ +.+|.+ |+||||
T Consensus         7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~   83 (136)
T 1d9s_A            7 MLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL-NRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPVH   83 (136)
T ss_dssp             CCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHHH
T ss_pred             CCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHHH
Confidence            34455555555555555555555555555554432 5555555555555 5555555555555443 555555 666666


Q ss_pred             HHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCC
Q 013760          143 IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA  196 (437)
Q Consensus       143 ~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~  196 (437)
                      +|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|++
T Consensus        84 ~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           84 DAAREGFLDTLVVLHR-AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHH-TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            6666666666666665 5666666666666666666666666666666666553

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=6.1e-26  Score=191.09  Aligned_cols=131  Identities=22%  Similarity=0.273  Sum_probs=122.1

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCC-CCcH
Q 013760           28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKK-GQTA  106 (437)
Q Consensus        28 ~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~-g~t~  106 (437)
                      ++..|.+|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+. |+.+++++|++.++++... |.. |.||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~-~~~~g~t~   81 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCA-DPATLTRP   81 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCC-BTTTTBCH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCc-CCCCCCCH
Confidence            4578899999999999999999999999999887 6789999999999999 9999999999999998755 777 9999


Q ss_pred             HHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCC
Q 013760          107 LHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID  163 (437)
Q Consensus       107 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~  163 (437)
                      ||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..++.+++++|++ .|+|
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~-~Gad  136 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHA-ATGD  136 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHH-HHCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCC
Confidence            99999999999999999999886 8999999999999999999999999998 6664

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=1.5e-27  Score=235.08  Aligned_cols=154  Identities=18%  Similarity=0.123  Sum_probs=128.2

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcc--cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCch--hHhhhcCCCcHHHHHH
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNL--VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL--AKIARNNGKTVLHSAA   77 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~--~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~--~~~~~~~G~tpLh~Aa   77 (437)
                      ||||.|+..|+ .+++++|++.+...  ....|..|.||||+||..|+.++|++|+++|++.  .+..+.+ .||||+||
T Consensus        94 T~Lh~Aa~~G~-~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa  171 (376)
T 2aja_A           94 VICFVAAITGC-SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA  171 (376)
T ss_dssp             HHHHHHHHHCC-HHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH
T ss_pred             CHHHHHHHcCC-HHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH
Confidence            79999999999 99999999987521  2235667899999999999999999999999752  1333333 99999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCc-ccCCCCCcHHHHHH-hCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHH
Q 013760           78 RMGHLEVVKALVSKDPSTGF-RTDKKGQTALHMAV-KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC  155 (437)
Q Consensus        78 ~~g~~~iv~~Ll~~~~~~~~-~~d~~g~t~Lh~A~-~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~  155 (437)
                      ..|+.+++++|++++++... ..|.+|.||||+|+ .+|+.+++++|++.+.        .|+||||.|+..|+.+++++
T Consensus       172 ~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~l  243 (376)
T 2aja_A          172 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPF  243 (376)
T ss_dssp             HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHH
T ss_pred             HCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHH
Confidence            99999999999999998654 24778999999999 9999999999998652        38999999999999999999


Q ss_pred             hhcccCCCccc
Q 013760          156 LLSIEGIDVNS  166 (437)
Q Consensus       156 Ll~~~g~~~n~  166 (437)
                      |++ .|++++.
T Consensus       244 L~~-~ga~~~~  253 (376)
T 2aja_A          244 IAR-HVNRLKE  253 (376)
T ss_dssp             HHH-HHHHHHH
T ss_pred             HHh-cCccccc
Confidence            998 5665543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=2.3e-24  Score=177.76  Aligned_cols=124  Identities=42%  Similarity=0.673  Sum_probs=69.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcC
Q 013760           69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG  148 (437)
Q Consensus        69 G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g  148 (437)
                      |.||||+|+..|+.+++++|++.+++.... |..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcC
Confidence            455555555555555555555555444322 445555555555555555555555554443 455555556666666656


Q ss_pred             cHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCC
Q 013760          149 RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA  195 (437)
Q Consensus       149 ~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga  195 (437)
                      +.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|+
T Consensus        80 ~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           80 HLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             hHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            6666666555 455555556666666666666666666666665555

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=2.3e-24  Score=177.82  Aligned_cols=126  Identities=39%  Similarity=0.627  Sum_probs=111.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhC
Q 013760           34 SCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKG  113 (437)
Q Consensus        34 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  113 (437)
                      +|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCccc-CCCCCcHHHHHHHc
Confidence            5889999999999999999999988876 567888999999999999999999999998887654 88899999999999


Q ss_pred             CCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCC
Q 013760          114 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID  163 (437)
Q Consensus       114 g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~  163 (437)
                      |+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|+|
T Consensus        79 ~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGAY  126 (126)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCC
T ss_pred             ChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHH-cCCC
Confidence            9999999999988776 7888999999999999999999999998 6764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=7.5e-25  Score=188.87  Aligned_cols=140  Identities=19%  Similarity=0.254  Sum_probs=118.5

Q ss_pred             hhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCCh-HHH
Q 013760           64 IARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNT-ALH  142 (437)
Q Consensus        64 ~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~T-pLh  142 (437)
                      ..+..|.||||+|+..|+.+++++|++.+++++.. |..|+||||+|+ .|+.+++++|++.+.++ +.+|.+|+| |||
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~   83 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVH   83 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHH
Confidence            45678999999999999999999999999988754 899999999985 99999999999998776 899999999 999


Q ss_pred             HHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCCh
Q 013760          143 IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSA  207 (437)
Q Consensus       143 ~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~  207 (437)
                      +|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|++....+..+.++
T Consensus        84 ~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  147 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDA  147 (156)
T ss_dssp             HHHHHTCHHHHHHHHH-HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------
T ss_pred             HHHHCCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcc
Confidence            9999999999999999 799999999999999999999999999999999999987766555443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=2e-24  Score=181.82  Aligned_cols=123  Identities=30%  Similarity=0.405  Sum_probs=65.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcC
Q 013760           69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG  148 (437)
Q Consensus        69 G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g  148 (437)
                      |.||||+|+..|+.+++++|++.+++.+.. |..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|
T Consensus        14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~   91 (136)
T 2jab_A           14 LGKKLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFIG   91 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcC
Confidence            445555555555555555555555444322 445555555555555555555555554443 445555555555555555


Q ss_pred             cHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcC
Q 013760          149 RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG  194 (437)
Q Consensus       149 ~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~g  194 (437)
                      +.+++++|++ .|++++.+|..|.||||+|+..++.+++++|++.|
T Consensus        92 ~~~~v~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           92 HLEIAEVLLK-HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CHHHHHHHHH-cCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            5555555555 45555555555555555555555555555555543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=4.5e-26  Score=202.05  Aligned_cols=165  Identities=23%  Similarity=0.287  Sum_probs=138.1

Q ss_pred             HHHcCCcHHHHHHHHhhCCcc----------cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHH
Q 013760            7 MWQQSRVILVLKELLGEFPNL----------VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSA   76 (437)
Q Consensus         7 A~~~g~~~~~vk~Ll~~~~~~----------~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~A   76 (437)
                      |++.|. .+.++.|++.....          ....|.+|.||||+|+..|+.++++.|++ +.++ +.+|.+|.||||+|
T Consensus         7 aa~~~~-~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A   83 (183)
T 3deo_A            7 GSRTAG-EGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFV   83 (183)
T ss_dssp             EEEEET-TTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHH
T ss_pred             HHHhcC-CchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHH
Confidence            444555 56666666542211          11235688999999999999999999999 7776 67899999999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHh
Q 013760           77 ARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL  156 (437)
Q Consensus        77 a~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L  156 (437)
                      +..|+.+++++|++.+++++...+.+|+||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..++.      
T Consensus        84 ~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~------  156 (183)
T 3deo_A           84 AGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT------  156 (183)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT------
T ss_pred             HHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC------
Confidence            99999999999999999988664489999999999999999999999998876 88999999999999875432      


Q ss_pred             hcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHc
Q 013760          157 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  193 (437)
Q Consensus       157 l~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~  193 (437)
                                  ..+.+||++|+..|..+++++|.++
T Consensus       157 ------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          157 ------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             ------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence                        3567999999999999999999764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=2e-24  Score=181.81  Aligned_cols=126  Identities=27%  Similarity=0.340  Sum_probs=113.6

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHH
Q 013760           30 TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHM  109 (437)
Q Consensus        30 ~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~  109 (437)
                      .....|.||||+|+..|+.+++++|++.|.++ +..|.+|.||||+|+..|+.+++++|++.+++++.. |..|.||||+
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~   86 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHL   86 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHH
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHH
Confidence            34567899999999999999999999999887 678889999999999999999999999999988754 8899999999


Q ss_pred             HHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhc
Q 013760          110 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  158 (437)
Q Consensus       110 A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  158 (437)
                      |+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++
T Consensus        87 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           87 AAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999998876 8899999999999999999999999987

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=1.1e-25  Score=209.20  Aligned_cols=145  Identities=25%  Similarity=0.344  Sum_probs=130.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHH
Q 013760           31 TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA  110 (437)
Q Consensus        31 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  110 (437)
                      .+.+|.||||+|+..|+.++++.|++ +.++ +.+|.+|.||||+|+..|+.+++++|++.+++++...+..|.||||+|
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A  118 (244)
T 3ui2_A           41 VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  118 (244)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            34579999999999999999999999 7776 778999999999999999999999999999999876448899999999


Q ss_pred             HhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHH
Q 013760          111 VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL  190 (437)
Q Consensus       111 ~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L  190 (437)
                      +..|+.+++++|++.+.++ +.+|.+|+||||+|+..++                  +..+.|||++|+..|+.+++++|
T Consensus       119 ~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L  179 (244)
T 3ui2_A          119 AGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVL  179 (244)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHH
Confidence            9999999999999998886 8899999999999986321                  25678999999999999999999


Q ss_pred             HHcCCC
Q 013760          191 KEAGAA  196 (437)
Q Consensus       191 ~~~ga~  196 (437)
                      .+++.+
T Consensus       180 ~~~~~~  185 (244)
T 3ui2_A          180 EGQVFE  185 (244)
T ss_dssp             HHHHEE
T ss_pred             HHhccc
Confidence            987544

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=1.8e-24  Score=182.07  Aligned_cols=125  Identities=28%  Similarity=0.390  Sum_probs=66.2

Q ss_pred             hhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHH
Q 013760           65 ARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA  144 (437)
Q Consensus        65 ~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A  144 (437)
                      +|.+|.||||+|+..|+.+++++|++.++++.. .|..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A   83 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV-KDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDA   83 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHHH
Confidence            344455555555555555555555555544432 2455555555555555555555555554443 45555555555555


Q ss_pred             HHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHH
Q 013760          145 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  192 (437)
Q Consensus       145 ~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~  192 (437)
                      +..|+.+++++|++ .|++++.+|..|.||||+|+..+..+++++|.+
T Consensus        84 ~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           84 AKNGHVDIVKLLLS-YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             HHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             HHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence            55555555555555 455555555555555555555555555544433

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.90  E-value=1.8e-25  Score=220.20  Aligned_cols=177  Identities=13%  Similarity=0.125  Sum_probs=142.9

Q ss_pred             hhhHHHH-cCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchh--HhhhcCCCcHHHHHHHc
Q 013760            3 MIHFMWQ-QSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLA--KIARNNGKTVLHSAARM   79 (437)
Q Consensus         3 ~Lh~A~~-~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~--~~~~~~G~tpLh~Aa~~   79 (437)
                      +++.|.. .++ .++++++++++        .++.||||+|+..|+.++|++|++.|+...  ...+..|.||||+||..
T Consensus        68 ~~~~a~~~~~~-~~~~~~l~~~g--------~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~  138 (376)
T 2aja_A           68 CLYYAHYNRNA-KQLWSDAHKKG--------IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN  138 (376)
T ss_dssp             HHHHHHTTTTC-TTHHHHHHHHT--------CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCC-HHHHHHHHHcC--------CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc
Confidence            4555555 355 67777777654        345799999999999999999999987211  12345678999999999


Q ss_pred             CCHHHHHHHHhCCCCCC--cccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCcccc--CCCCCChHHHHHH-HcCcHHHHH
Q 013760           80 GHLEVVKALVSKDPSTG--FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKL--EDNKGNTALHIAI-KKGRTQIVR  154 (437)
Q Consensus        80 g~~~iv~~Ll~~~~~~~--~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~--~d~~G~TpLh~A~-~~g~~~iv~  154 (437)
                      |+.++|++|++++++..  ...+.+ .||||+|+.+|+.+++++|++.++++ +.  .|.+|+||||+|+ ..|+.++++
T Consensus       139 G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~  216 (376)
T 2aja_A          139 GHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVIN  216 (376)
T ss_dssp             TCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             CCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHH
Confidence            99999999999997632  111223 99999999999999999999999876 44  7889999999999 999999999


Q ss_pred             HhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcc
Q 013760          155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  198 (437)
Q Consensus       155 ~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~  198 (437)
                      +|++ .|+       .|.|||+.|+..|+.+++++|+++|++..
T Consensus       217 ~Ll~-~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~  252 (376)
T 2aja_A          217 FLLD-CPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLK  252 (376)
T ss_dssp             HHTT-SHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHH
T ss_pred             HHHh-CCC-------ccchHHHHHHHCCCHHHHHHHHhcCcccc
Confidence            9999 553       38899999999999999999999987653

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=6.9e-24  Score=178.54  Aligned_cols=126  Identities=25%  Similarity=0.284  Sum_probs=116.0

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHH
Q 013760           30 TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHM  109 (437)
Q Consensus        30 ~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~  109 (437)
                      .+|.+|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.+.+.... |..|.||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT-GYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCc-CCCCCCHHHH
Confidence            47889999999999999999999999999887 678899999999999999999999999999988754 8999999999


Q ss_pred             HHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhc
Q 013760          110 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  158 (437)
Q Consensus       110 A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  158 (437)
                      |+..|+.+++++|++.+.++ +.+|.+|+||||+|+..+..+++++|.+
T Consensus        83 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence            99999999999999998876 8999999999999999999998887766

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.88  E-value=8.6e-23  Score=189.51  Aligned_cols=134  Identities=25%  Similarity=0.248  Sum_probs=121.3

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhh-cCCCcHHHHHHHcC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR-NNGKTVLHSAARMG   80 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~-~~G~tpLh~Aa~~g   80 (437)
                      ||||.|+..|+ .++++.|++ +.+ ++.+|..|.||||+|+..|+.++|++|+++|+++ +.++ .+|.||||+|+..|
T Consensus        47 t~L~~A~~~g~-~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~~g  122 (244)
T 3ui2_A           47 TPWWTAARKAD-EQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYV  122 (244)
T ss_dssp             HHHHHHHTTTC-HHHHHHTTT-TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHHTT
T ss_pred             CHHHHHHHcCC-HHHHHHHHc-CCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHcC
Confidence            79999999999 999999999 544 5678999999999999999999999999999998 4455 88999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  158 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  158 (437)
                      +.+++++|++.++++.. .|..|.||||+|+..+                  .+..+.||||+|+..|+.+++++|++
T Consensus       123 ~~~~v~~Ll~~ga~~~~-~d~~g~t~l~~A~~~~------------------~~~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          123 RPEVVEALVELGADIEV-EDERGLTALELAREIL------------------KTTPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             CHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHH------------------TTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHHH------------------hccCCCCHHHHHHHcChHHHHHHHHH
Confidence            99999999999999875 4999999999998622                  23568999999999999999999997

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=6.1e-23  Score=181.78  Aligned_cols=134  Identities=25%  Similarity=0.231  Sum_probs=120.6

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhh-cCCCcHHHHHHHcC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR-NNGKTVLHSAARMG   80 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~-~~G~tpLh~Aa~~g   80 (437)
                      ||||.|+..|+ .++++.|++ +. ..+..|.+|.||||+|+..|+.+++++|+++|+++ +.+| .+|+||||+|+..|
T Consensus        46 t~L~~A~~~g~-~~~v~~Ll~-~~-~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~~~~  121 (183)
T 3deo_A           46 TPWWTAARKAD-EQALSQLLE-DR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYV  121 (183)
T ss_dssp             HHHHHHHHTTC-HHHHHHHTT-TS-CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHHHTT
T ss_pred             CHHHHHHHcCC-HHHHHHHHh-cC-CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHhcC
Confidence            79999999999 999999999 44 45678999999999999999999999999999998 4555 88999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  158 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  158 (437)
                      +.+++++|++.++++.. +|.+|+||||+|++.++.                  ..+.+||++|+..|+.+++++|.+
T Consensus       122 ~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          122 RPEVVEALVELGADIEV-EDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             CHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHcCCCCcC-CCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHHH
Confidence            99999999999999875 499999999999974322                  357899999999999999999976

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=5.9e-23  Score=169.54  Aligned_cols=110  Identities=24%  Similarity=0.282  Sum_probs=76.5

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHH
Q 013760           67 NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK  146 (437)
Q Consensus        67 ~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~  146 (437)
                      ..|.||||+|+..|+.+++++|++.+++... .|..|+||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNR-TLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVY   82 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTS-CCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence            4566677777777777777777777666553 3666777777777777777777777766554 6677777777777777


Q ss_pred             cCcHHHHHHhhcccCCCccccccCCCCHHHHHH
Q 013760          147 KGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE  179 (437)
Q Consensus       147 ~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~  179 (437)
                      .|+.+++++|++ .|++++.+|..|.||||+|.
T Consensus        83 ~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           83 EGHVSCVKLLLS-KGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCC
T ss_pred             cCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHhC
Confidence            777777777777 57777777777777777773

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=3.3e-23  Score=198.47  Aligned_cols=145  Identities=22%  Similarity=0.183  Sum_probs=123.7

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHh-----hhcCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCcccCCC
Q 013760           31 TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKI-----ARNNGKTVLHSAARM---GHLEVVKALVSKDPSTGFRTDKK  102 (437)
Q Consensus        31 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-----~~~~G~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~d~~  102 (437)
                      ....+.++||.|+..|+.+.++.|++.|+++...     .+..|.||||+|+..   |+.+++++|++.+++++.. |.+
T Consensus       147 ~~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~-d~~  225 (301)
T 2b0o_E          147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AAD  225 (301)
T ss_dssp             CCC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC-CTT
T ss_pred             ccCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC-CCC
Confidence            4556789999999999999999999999987432     588999999999997   8999999999999998754 899


Q ss_pred             CCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcC
Q 013760          103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG  182 (437)
Q Consensus       103 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~  182 (437)
                      |+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|++ .|++      .|.||||+|+..|
T Consensus       226 G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~-~ga~------~g~tpLh~A~~~g  297 (301)
T 2b0o_E          226 GNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQ-AQAG------TFAFPLHVDYSWV  297 (301)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHH-HHHH------TTSSCCC------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH-hcCC------CCCChhHHHHhcC
Confidence            999999999999999999999998886 8999999999999999999999999998 6766      5789999999887


Q ss_pred             cH
Q 013760          183 NT  184 (437)
Q Consensus       183 ~~  184 (437)
                      +.
T Consensus       298 ~~  299 (301)
T 2b0o_E          298 IS  299 (301)
T ss_dssp             --
T ss_pred             Cc
Confidence            64

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=1.7e-23  Score=191.10  Aligned_cols=137  Identities=27%  Similarity=0.328  Sum_probs=111.5

Q ss_pred             HhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcC-CCCccccCCCCCChHH
Q 013760           63 KIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP-DPSVLKLEDNKGNTAL  141 (437)
Q Consensus        63 ~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~G~TpL  141 (437)
                      ...+.+|.||||+|+..|+.+++++|++.+.+++. .|..|+||||+|+.+|+.+++++|++. +.+ ++.+|.+|+|||
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tpL  144 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG-LDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTAL  144 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCHH
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCHH
Confidence            34577899999999999999999999999988774 488999999999999999999999998 555 488999999999


Q ss_pred             HHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCC
Q 013760          142 HIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHG  202 (437)
Q Consensus       142 h~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~  202 (437)
                      |+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.++++.|++.|+.....+.
T Consensus       145 ~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~  204 (222)
T 3ehr_A          145 HAAAWKGYADIVQLLLA-KGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNA  204 (222)
T ss_dssp             HHHHHHTCHHHHHHHHH-HTCCSCCCCTTSCCHHHHCCSHHHHHHHC--------------
T ss_pred             HHHHHcCCHHHHHHHHH-cCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccch
Confidence            99999999999999999 7999999999999999999999999999999999988765443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=5.1e-23  Score=187.84  Aligned_cols=139  Identities=22%  Similarity=0.220  Sum_probs=113.8

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCcccCCCCCcHHH
Q 013760           30 TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK-DPSTGFRTDKKGQTALH  108 (437)
Q Consensus        30 ~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh  108 (437)
                      ..|.+|.||||+|+..|+.++++.|++.|.++ +.+|.+|.||||+|+..|+.+++++|++. +.+.+. .|..|+||||
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~-~d~~g~tpL~  145 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ-QNKLGDTALH  145 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCC-CCTTSCCHHH
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccc-cCCCCCCHHH
Confidence            34667899999999999999999999999887 67899999999999999999999999999 777764 4999999999


Q ss_pred             HHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCC
Q 013760          109 MAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGE  172 (437)
Q Consensus       109 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~  172 (437)
                      +|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..++.++++.|++ .+++.+..|.+|.
T Consensus       146 ~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~-~~~~~~~~~~~~~  207 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQG-TDAVRTLSNAEDY  207 (222)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC------------------
T ss_pred             HHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhc-cchhhhccchhhh
Confidence            999999999999999998886 8999999999999999999999999998 7888877776653

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=5.5e-23  Score=169.69  Aligned_cols=118  Identities=22%  Similarity=0.246  Sum_probs=101.2

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHH
Q 013760           31 TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMA  110 (437)
Q Consensus        31 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  110 (437)
                      .+..|.||||+|+..|+.+++++|++.+.++ +..|.+|.||||+|+..|+.+++++|++.+++++.. |..|+||||+|
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~tpL~~A   80 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSA   80 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CTTSCCHHHHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC-CCCCCCHHHHH
Confidence            3567889999999999999999999999887 678889999999999999999999999999887754 88999999999


Q ss_pred             HhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHH
Q 013760          111 VKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQ  151 (437)
Q Consensus       111 ~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~  151 (437)
                      +..|+.+++++|++.+.++ +.+|.+|+||||+|...+..+
T Consensus        81 ~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCCHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCCHHHHH
Confidence            9999999999999998776 889999999999995444333

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=8.8e-23  Score=195.48  Aligned_cols=129  Identities=27%  Similarity=0.278  Sum_probs=119.6

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc-----cCCCCCcHHHHHHhC---CCHHHHHHhhcCCCCccccCCCCCC
Q 013760           67 NNGKTVLHSAARMGHLEVVKALVSKDPSTGFR-----TDKKGQTALHMAVKG---QNEDIVLELIRPDPSVLKLEDNKGN  138 (437)
Q Consensus        67 ~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-----~d~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~G~  138 (437)
                      ..+.++||.|+..|+.+.++.|++.+++++..     .|..|+||||+|+..   |+.+++++|++.++++ +.+|.+|+
T Consensus       149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~  227 (301)
T 2b0o_E          149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGN  227 (301)
T ss_dssp             C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCC
T ss_pred             CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCC
Confidence            33567899999999999999999999998753     588999999999997   8999999999998876 89999999


Q ss_pred             hHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCc
Q 013760          139 TALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  197 (437)
Q Consensus       139 TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~  197 (437)
                      ||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+++|++.
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~  285 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT  285 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHH-TTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence            99999999999999999999 89999999999999999999999999999999999863

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=1.6e-21  Score=184.57  Aligned_cols=127  Identities=24%  Similarity=0.297  Sum_probs=118.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCCCcc-----cCCCCCcHHHHHHhC---CCHHHHHHhhcCCCCccccCCCCCChHH
Q 013760           70 KTVLHSAARMGHLEVVKALVSKDPSTGFR-----TDKKGQTALHMAVKG---QNEDIVLELIRPDPSVLKLEDNKGNTAL  141 (437)
Q Consensus        70 ~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-----~d~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~G~TpL  141 (437)
                      .++|+.|+..|+.+.++.+++.+++....     .|..|+||||+|+..   |+.+++++|++.++++ +.+|.+|+|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHH
Confidence            47899999999999999999999986433     378899999999999   8999999999998886 89999999999


Q ss_pred             HHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcc
Q 013760          142 HIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHS  198 (437)
Q Consensus       142 h~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~  198 (437)
                      |+|+..|+.+++++|++ .|+|++.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus       210 h~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             HHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999 899999999999999999999999999999999998754

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=4.5e-21  Score=188.20  Aligned_cols=128  Identities=20%  Similarity=0.280  Sum_probs=84.8

Q ss_pred             hcCCCcHHHHHHHc-CCHHHHHHHHhCCCCCCcccC--CCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHH
Q 013760           66 RNNGKTVLHSAARM-GHLEVVKALVSKDPSTGFRTD--KKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALH  142 (437)
Q Consensus        66 ~~~G~tpLh~Aa~~-g~~~iv~~Ll~~~~~~~~~~d--~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh  142 (437)
                      +..+.||||.|+.. |+.++++.|++.+++++.. |  ..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh  273 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLH  273 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence            33455667777766 6777777777666666543 4  56667777777777777777777666554 666666777777


Q ss_pred             HHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCC
Q 013760          143 IAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAA  196 (437)
Q Consensus       143 ~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~  196 (437)
                      +|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+.++..
T Consensus       274 ~A~~~g~~~~v~~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          274 HATILGHTGLACLFLK-RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             HHHHcCcHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            7777777777777776 5667777777777777777777777777766666543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=2.1e-20  Score=176.84  Aligned_cols=130  Identities=22%  Similarity=0.212  Sum_probs=105.8

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCchh-----HhhhcCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCcccCCC
Q 013760           31 TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLA-----KIARNNGKTVLHSAARM---GHLEVVKALVSKDPSTGFRTDKK  102 (437)
Q Consensus        31 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~-----~~~~~~G~tpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~d~~  102 (437)
                      .+....++|+.|+..|+.+.++.+++.|.+..     +..|..|.||||+|+..   |+.+++++|++.+++++.. |.+
T Consensus       126 ~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~-d~~  204 (278)
T 1dcq_A          126 DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ-TGK  204 (278)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC-CTT
T ss_pred             ccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcccc-CCC
Confidence            34455678888888888888888888887753     23367888888888888   7888888888888887654 888


Q ss_pred             CCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCC
Q 013760          103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID  163 (437)
Q Consensus       103 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~  163 (437)
                      |+||||+|+..|+.+++++|++.|+++ +.+|.+|+||||+|+..|+.+++++|++ .|++
T Consensus       205 g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~  263 (278)
T 1dcq_A          205 GSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQ-ALSG  263 (278)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHH-cCCC
Confidence            888888888888888888888888776 8888888888888888888888888888 5554

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.83  E-value=3.3e-20  Score=145.10  Aligned_cols=91  Identities=38%  Similarity=0.660  Sum_probs=47.1

Q ss_pred             CCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcC
Q 013760          103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLG  182 (437)
Q Consensus       103 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~  182 (437)
                      |+||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcC
Confidence            445555555555555555555544443 4455555555555555555555555555 45555555555555555555555


Q ss_pred             cHHHHHHHHHcCC
Q 013760          183 NTELFSLLKEAGA  195 (437)
Q Consensus       183 ~~~i~~~L~~~ga  195 (437)
                      +.+++++|+++|+
T Consensus        80 ~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           80 HLEVVKLLLEAGA   92 (93)
T ss_dssp             CHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCC
Confidence            5555555555554

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=3.9e-20  Score=144.69  Aligned_cols=90  Identities=41%  Similarity=0.632  Sum_probs=42.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCC
Q 013760           35 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQ  114 (437)
Q Consensus        35 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g  114 (437)
                      |.||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..|+.+++++|++.++++... |.+|.||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNG   79 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcC
Confidence            444555555555555555555544443 334444445555555555555555444444444322 444444444444444


Q ss_pred             CHHHHHHhhcCC
Q 013760          115 NEDIVLELIRPD  126 (437)
Q Consensus       115 ~~~iv~~Ll~~~  126 (437)
                      +.+++++|++.|
T Consensus        80 ~~~~~~~Ll~~g   91 (93)
T 1n0q_A           80 HLEVVKLLLEAG   91 (93)
T ss_dssp             CHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcC
Confidence            444444444443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=2.2e-20  Score=152.00  Aligned_cols=108  Identities=36%  Similarity=0.502  Sum_probs=80.9

Q ss_pred             hhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHH
Q 013760           64 IARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHI  143 (437)
Q Consensus        64 ~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~  143 (437)
                      .+|.+|.||||+|+..|+.+++++|++.+++... .|..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSC-CCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHH
Confidence            3566777777777777777777777777777654 3777778888888777788888777777665 6777788888888


Q ss_pred             HHHcCcHHHHHHhhcccCCCccccccCCCCH
Q 013760          144 AIKKGRTQIVRCLLSIEGIDVNSLNKAGESP  174 (437)
Q Consensus       144 A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~  174 (437)
                      |+..++.+++++|++ .|+++|.++..|.||
T Consensus        82 A~~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDA-KGADVNARSWGSSHH  111 (115)
T ss_dssp             HHTTTCHHHHHHHHT-TSSSHHHHSCCCC--
T ss_pred             HHHCCCHHHHHHHHH-cCCCCCcCCcccccc
Confidence            888888888888887 778888888877776

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=6.2e-20  Score=180.08  Aligned_cols=146  Identities=17%  Similarity=0.222  Sum_probs=115.4

Q ss_pred             CCCCcHHHHHHHc-CCHHHHHHHHhcCCchhHhhh--cCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHH
Q 013760           33 LSCSTALHTAAAQ-GHIDVVNFLLEIDSNLAKIAR--NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHM  109 (437)
Q Consensus        33 ~~g~TpLh~Aa~~-g~~~iv~~Ll~~~~~~~~~~~--~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~  109 (437)
                      ..+.||||.|+.. |+.++++.|++.|+++ +..+  .+|.||||+|+..|+.+++++|++++++++. .|..|+||||+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~-~d~~G~TpLh~  274 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ-ADSAGRGPLHH  274 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-CCCCCCCHHHH
Confidence            3456899999999 9999999999999998 5566  7899999999999999999999999999875 49999999999


Q ss_pred             HHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhccc--CCCccccccCCCCHHHHHHHc
Q 013760          110 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE--GIDVNSLNKAGESPLDVAEKL  181 (437)
Q Consensus       110 A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~--g~~~n~~n~~G~T~L~~A~~~  181 (437)
                      |+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|+...  +.+....+..+.|+++++...
T Consensus       275 A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            99999999999999999887 899999999999999999999999999732  234456667788888887643

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=5.1e-20  Score=149.82  Aligned_cols=108  Identities=31%  Similarity=0.393  Sum_probs=99.2

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHH
Q 013760           30 TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHM  109 (437)
Q Consensus        30 ~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~  109 (437)
                      .+|.+|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+++.... |..|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR-SKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCC-CTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCccc-CCCCCCHHHH
Confidence            46889999999999999999999999999887 678899999999999999999999999999998754 8999999999


Q ss_pred             HHhCCCHHHHHHhhcCCCCccccCCCCCChH
Q 013760          110 AVKGQNEDIVLELIRPDPSVLKLEDNKGNTA  140 (437)
Q Consensus       110 A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~Tp  140 (437)
                      |+..|+.+++++|++.++++ +.++..|.||
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~  111 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADV-NARSWGSSHH  111 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSH-HHHSCCCC--
T ss_pred             HHHCCCHHHHHHHHHcCCCC-CcCCcccccc
Confidence            99999999999999999887 8899999987

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.72  E-value=1.2e-17  Score=134.83  Aligned_cols=93  Identities=34%  Similarity=0.417  Sum_probs=57.1

Q ss_pred             cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHH
Q 013760           28 VMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTAL  107 (437)
Q Consensus        28 ~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L  107 (437)
                      ....|.+|.||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..|+.+++++|++.+++... .|..|.|||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl   94 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAF   94 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cccCCCcHH
Confidence            3445666666666666666666666666666655 45566666666666666666666666666666543 366666666


Q ss_pred             HHHHhCCCHHHHHHh
Q 013760          108 HMAVKGQNEDIVLEL  122 (437)
Q Consensus       108 h~A~~~g~~~iv~~L  122 (437)
                      |+|+..|+.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            666666666666554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.70  E-value=3.3e-17  Score=132.27  Aligned_cols=89  Identities=27%  Similarity=0.420  Sum_probs=42.7

Q ss_pred             hhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHH
Q 013760           65 ARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIA  144 (437)
Q Consensus        65 ~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A  144 (437)
                      .|.+|.||||+|+..|+.+++++|++.+++.+.. |..|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~-d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDIS   97 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHHH
Confidence            3444555555555555555555555554444322 444555555555555555555555444433 44444455555555


Q ss_pred             HHcCcHHHHHH
Q 013760          145 IKKGRTQIVRC  155 (437)
Q Consensus       145 ~~~g~~~iv~~  155 (437)
                      +..|+.+++++
T Consensus        98 ~~~~~~~~~~~  108 (110)
T 2zgd_A           98 IDNGNEDLAEI  108 (110)
T ss_dssp             HHHTCHHHHHH
T ss_pred             HHcCCHHHHHH
Confidence            55555444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	437
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-24
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-19
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-15
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-18
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-11
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.003
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	5e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.003
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.004
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	1e-05

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 2e-26
 Identities = 50/191 (26%), Positives = 76/191 (39%), Gaps = 35/191 (18%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
           T LH A+  GH+ +V  LL+  ++   ++    +T LH AAR GH EV K L+       
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV--------------------------- 129
            +  K  QT LH A +  + ++V  L+  + +                            
Sbjct: 61  AK-AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 130 -----LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 184
                      KG T LH+A K G+ ++   LL       N+  K G +PL VA    N 
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE-RDAHPNAAGKNGLTPLHVAVHHNNL 178

Query: 185 ELFSLLKEAGA 195
           ++  LL   G 
Sbjct: 179 DIVKLLLPRGG 189

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.5 bits (244), Expect = 4e-23
 Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 9/201 (4%)

Query: 21  LGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG 80
           L ++        +   T LH AA +GH ++V  LL   +N   +   +G T LH  A+ G
Sbjct: 217 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEG 275

Query: 81  HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA 140
           H+ V   L+         T + G T LH+A    N  +V + +    + +  +   G + 
Sbjct: 276 HVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLV-KFLLQHQADVNAKTKLGYSP 333

Query: 141 LHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 200
           LH A ++G T IV  LL   G   N ++  G +PL +A++LG   +  +LK        D
Sbjct: 334 LHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV-----TD 387

Query: 201 HGKPPSATKQLKQTVSDIKHD 221
                  + + + +  +   +
Sbjct: 388 ETSFVLVSDKHRMSFPETVDE 408

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 5e-16
 Identities = 51/210 (24%), Positives = 84/210 (40%), Gaps = 37/210 (17%)

Query: 19  ELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR 78
           ELL E          +  T LH A    ++D+V  LL    +       NG T LH AA+
Sbjct: 149 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAK 207

Query: 79  MGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN 138
              +EV ++L+    S       +G T LH+A +  + ++V  L+    +   L +  G 
Sbjct: 208 QNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMV-ALLLSKQANGNLGNKSGL 265

Query: 139 TALHIAIKKGRTQIVRCLLSIEGIDVNSL------------------------------- 167
           T LH+  ++G   +   L+   G+ V++                                
Sbjct: 266 TPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 324

Query: 168 --NKAGESPLDVAEKLGNTELFSLLKEAGA 195
              K G SPL  A + G+T++ +LL + GA
Sbjct: 325 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGA 354

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.5 bits (244), Expect = 8e-24
 Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 14/180 (7%)

Query: 29  MTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL---------AKIARNNGKTVLHSAARM 79
              D    TA   AA  G +  + FL +  +N+          +  R  G T L  AA  
Sbjct: 99  NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158

Query: 80  GHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN----EDIVLELIRPDPSVLKLEDN 135
           GH+EV+K L+ +  +     D  G+ AL  A+   +    E I   L+     V  +   
Sbjct: 159 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGE 217

Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
           +G T L +A++K    +V+ LL  E I++N  +  G++ L +A +L   ++  LL + GA
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (194), Expect = 3e-17
 Identities = 36/176 (20%), Positives = 57/176 (32%), Gaps = 41/176 (23%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPS-- 94
             L  A     +D+V  LLE  +N+       G T LH+A +M   ++V+ L+       
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 95  ------------------------------TGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
                                              D  G TA   A        +  L +
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 125 PDPS---------VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAG 171
              +           +     G TAL  A +KG  ++++ LL   G DVN+ +  G
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 7e-11
 Identities = 38/173 (21%), Positives = 60/173 (34%), Gaps = 42/173 (24%)

Query: 65  ARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
           A      +L  A +   +++V+ L+    +  F+ ++ G T LH AV+   EDIV  L+R
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 125 PDPS--------------------------------VLKLEDNKGNTALHIAIKKGRTQI 152
                                                +   D  G TA   A   G+ + 
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 153 VRCLLS---------IEGIDVNSLNKAGESPLDVAEKLGNTELFS-LLKEAGA 195
           ++ L               D   L K G + L  A + G+ E+   LL E GA
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 8e-11
 Identities = 17/91 (18%), Positives = 33/91 (36%)

Query: 1   MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 60
             +   +      +  +  LL +    V        T L  A  + H+ +V  LLE +  
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244

Query: 61  LAKIARNNGKTVLHSAARMGHLEVVKALVSK 91
                 ++GKT L  A  +   ++ + L  +
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.9 bits (206), Expect = 4e-19
 Identities = 50/209 (23%), Positives = 79/209 (37%), Gaps = 36/209 (17%)

Query: 16  VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDV------------------------- 50
            LKE +    +L   TD    TALH A + GH ++                         
Sbjct: 18  ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 77

Query: 51  -------VNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKG 103
                  +   L            NG T LH AA     E+   L+    +   + D   
Sbjct: 78  ASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYE 136

Query: 104 QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID 163
            TA+H A    N  ++  L+    S   ++D +GNT LH+A  + R +  + L+S +G  
Sbjct: 137 ATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPLHLACDEERVEEAKLLVS-QGAS 194

Query: 164 VNSLNKAGESPLDVAEKLGNTELFSLLKE 192
           +   NK  ++PL VA+  G   +   + E
Sbjct: 195 IYIENKEEKTPLQVAKG-GLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 4e-15
 Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 6/161 (3%)

Query: 1   MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 60
                     S     + + L      V   + +  T LH AA++   ++   LLE  +N
Sbjct: 69  AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 128

Query: 61  LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL 120
                 +   T +H AA  G+L+++  L+    ST    D +G T LH+A   +  +   
Sbjct: 129 P-DAKDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPLHLACDEERVEEAK 186

Query: 121 ELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG 161
            L+    S+  +E+ +  T L +A K G   I++ ++  EG
Sbjct: 187 LLVSQGASI-YIENKEEKTPLQVA-KGGLGLILKRMV--EG 223

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (173), Expect = 9e-15
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 3/140 (2%)

Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPST 95
           +  +   A  G ++ +   +  D +LA     + +T LH A   GH E+V+ L+      
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 96  GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 155
             + D      LH+A     ++IV  L+     V    +  G T LH A  K R +I   
Sbjct: 64  NDKDDAGWSP-LHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVM 121

Query: 156 LLSIEGIDVNSLNKAGESPL 175
           LL   G + ++ +    + +
Sbjct: 122 LLE-GGANPDAKDHYEATAM 140

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.6 bits (200), Expect = 6e-18
 Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 55/217 (25%)

Query: 16  VLKELLGEFP----NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN----------- 60
           +L+E+   FP    NL +  D   +T LH   +  ++++V  L++  SN           
Sbjct: 84  LLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESC 143

Query: 61  -------------------------------------LAKIARNNGKTVLHSAARMGHLE 83
                                                L  I   +G T   +AA+     
Sbjct: 144 LVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI 203

Query: 84  VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIV--LELIRPDPSVLKLEDNKGNTAL 141
           ++  +V K          + ++  +     + + I+  L+L     ++L  +D+ G+T L
Sbjct: 204 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL 263

Query: 142 HIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 178
           +IA + G   IV  LL   G D    NK+G  P+D  
Sbjct: 264 NIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.1 bits (170), Expect = 6e-14
 Identities = 36/228 (15%), Positives = 71/228 (31%), Gaps = 50/228 (21%)

Query: 18  KELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAA 77
             L  +  N       S     H +      +V +       NL      +G T LH   
Sbjct: 56  TSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLT 115

Query: 78  RMGHLEVVKALVSKDPS------------------------------------TGFRTDK 101
            + +LE+VK LV    +                                         D 
Sbjct: 116 SIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS 175

Query: 102 KGQTALHMAV------------KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGR 149
             +T LH  +            K   + ++  +++     ++   N+  +  +    + +
Sbjct: 176 MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK 235

Query: 150 TQIVRCLLSIEGI--DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
             I+  L     I   +N+ +  G++ L++A +LGN  +   L + GA
Sbjct: 236 DSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 283

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.5 bits (140), Expect = 3e-10
 Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 7/99 (7%)

Query: 17  LKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLL--EIDSNLAKIARNNGKTVLH 74
           +  ++ +    + +      +  +    +    ++  L    I +N+     +NG T L+
Sbjct: 205 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN 264

Query: 75  SAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAV 111
            AAR+G++ +V AL+    DP      +K G   +    
Sbjct: 265 IAARLGNISIVDALLDYGADPF---IANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.5 bits (140), Expect = 4e-10
 Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 1/113 (0%)

Query: 66  RNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRP 125
           +   +  L         E+  +L +   +         Q   H++     +++       
Sbjct: 36  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 95

Query: 126 DPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVA 178
             ++    D  GNT LH        ++V+ L+   G +    +  GES L  A
Sbjct: 96  QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDNMGESCLVKA 147

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 26/156 (16%), Positives = 47/156 (30%), Gaps = 4/156 (2%)

Query: 33  LSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKD 92
           +     L         ++   L    SN      ++ +   H +      EV  A  +  
Sbjct: 37  MKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ 96

Query: 93  PSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKK---GR 149
            +     D+ G T LH      N ++V  L++   + L   DN G + L  A+K      
Sbjct: 97  LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYD 155

Query: 150 TQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE 185
           +     LL      +   +    + L          
Sbjct: 156 SGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMT 191

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 79.6 bits (195), Expect = 5e-17
 Identities = 25/180 (13%), Positives = 53/180 (29%), Gaps = 11/180 (6%)

Query: 32  DLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALV 89
            +        AA  G    ++ L  + ++   +   +         AA  GHL V+  L 
Sbjct: 87  GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC 146

Query: 90  SKDPSTGFRT-DKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIK 146
              P+        +   A  +A +  +  ++  L    P  +   ++          A+ 
Sbjct: 147 ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG 206

Query: 147 KGRTQIVRCLLSIEGIDVNSLNKAGES-PLDVAEKL-----GNTELFSLLKEAGAAHSKD 200
           +G   ++  LL    +   +     E     V   +        E+    K +      D
Sbjct: 207 RGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFD 266

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 74.2 bits (181), Expect = 3e-15
 Identities = 19/143 (13%), Positives = 34/143 (23%), Gaps = 16/143 (11%)

Query: 26  NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVV 85
           N ++   +  + A       G   V  F+    + L              +   G  ++V
Sbjct: 214 NFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL-----KEMHDAFKLSNPDGVFDLV 268

Query: 86  KALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDN----KGNTAL 141
                                L         D +  L+                  N  L
Sbjct: 269 TKSECL-------QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELL 321

Query: 142 HIAIKKGRTQIVRCLLSIEGIDV 164
            +A++ G       LLSI  +  
Sbjct: 322 RLALRLGNQGACALLLSIPSVLA 344

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 70.3 bits (171), Expect = 6e-14
 Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 15/195 (7%)

Query: 14  ILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL-AKIARNNGKTV 72
            L    LL     +V         A   AA  GH+ V+N L E+       + +      
Sbjct: 105 ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA 164

Query: 73  LHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVL 130
              AA  GHL V+  L       +T     +        AV   + +++  L+     + 
Sbjct: 165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML- 223

Query: 131 KLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVN----SLNKAGESPLDVAEKLGNTEL 186
                    A     + G   +   +                   +   D+  K    + 
Sbjct: 224 -------AYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQG 276

Query: 187 FSLLKEAGAAHSKDH 201
           F +L+     + +  
Sbjct: 277 FYMLRNLIRRNDEVL 291

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 66.5 bits (161), Expect = 1e-12
 Identities = 31/173 (17%), Positives = 50/173 (28%), Gaps = 24/173 (13%)

Query: 22  GEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH 81
                  M    +       A  +GH +V+NFLL+                       G 
Sbjct: 184 APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP--------VMLAYAEIHEFEYGE 235

Query: 82  LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTAL 141
             V   +            K+   A  ++      D+V +          L+       L
Sbjct: 236 KYVNPFIARHVNR-----LKEMHDAFKLSNPDGVFDLVTKSEC-------LQGFYMLRNL 283

Query: 142 HIAIKKGRTQIVRCLLSIEGI----DVNSLNKAGESPLDVAEKLGNTELFSLL 190
                +     +R LLSI GI       ++       L +A +LGN    +LL
Sbjct: 284 IRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 53.4 bits (127), Expect = 2e-08
 Identities = 17/163 (10%), Positives = 36/163 (22%), Gaps = 26/163 (15%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
             L         ++    +  +              +         +V + L     +  
Sbjct: 14  PQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYY-AHY 72

Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR-- 154
            R  K+  +  H                           K      +A   G +  +   
Sbjct: 73  NRNAKQLWSDAHKK-----------------------GIKSEVICFVAAITGCSSALDTL 109

Query: 155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH 197
           CLL      V  +         +A + G+  + + L E     
Sbjct: 110 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 152

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 72.1 bits (175), Expect = 8e-15
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 99  TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
              KG+TALH A +  N  IV  L+    S    +D  G T + +A ++GR ++V  L+ 
Sbjct: 183 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 242

Query: 159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA 193
            +G  V +++    +   +A+   +  +  +    
Sbjct: 243 -QGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 64.4 bits (155), Expect = 3e-12
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 24  FPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLE 83
                 +      TALH AA   ++ +V +L+    +       +GKT +  AA+ G +E
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE 235

Query: 84  VVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
           VV  L+ +          D    TA  +A    + +IV    R
Sbjct: 236 VVMYLIQQGASVEA---VDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.9 bits (146), Expect = 5e-11
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 5   HFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKI 64
                Q   + ++K L+GE  +     D    T +  AA +G I+VV +L++  +++ + 
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EA 249

Query: 65  ARNNGKTVLHSAARMGHLEVVKAL 88
                 T    A    H  +V   
Sbjct: 250 VDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 56.7 bits (135), Expect = 1e-09
 Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 10/88 (11%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
             LH   A G   +   +     N+      + +TVLH  A     E  + L+  +    
Sbjct: 4   IKLH-TEAAGSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 97  -------FRTDKKGQTALHMAVKGQNED 117
                     D    T L +AV  +   
Sbjct: 61  IAAGADVNAMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 54.7 bits (130), Expect = 5e-09
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 104 QTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE--- 160
           ++ + +  +      + E I  + SV  ++     T LH        +    L+  E   
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRE-SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 161 ----GIDVNSLNKAGESPL 175
               G DVN+++    +PL
Sbjct: 60  CIAAGADVNAMDCDENTPL 78

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.5 bits (119), Expect = 1e-07
 Identities = 36/244 (14%), Positives = 74/244 (30%), Gaps = 54/244 (22%)

Query: 4   IHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE--IDSNL 61
           I    + +    + + +  E  N++        T LH  A+    +    L+       +
Sbjct: 4   IKLHTEAAGSYAITEPITRESVNII--DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 61

Query: 62  AKIAR-----NNGKTVLHSAA---------------------------------RMGHLE 83
           A  A       +  T L  A                                        
Sbjct: 62  AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFG 121

Query: 84  VVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI------------VLELIRPDPSVLK 131
           ++  +++     G   +        + +   NE                ++     +   
Sbjct: 122 MMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD 181

Query: 132 LEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
            E  KG TALH A +     IV+ L+  +G + +  ++ G++P+ +A + G  E+   L 
Sbjct: 182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI 241

Query: 192 EAGA 195
           + GA
Sbjct: 242 QQGA 245

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.0 bits (167), Expect = 7e-14
 Identities = 48/232 (20%), Positives = 72/232 (31%), Gaps = 48/232 (20%)

Query: 16  VLKELL--GEFPNLVMTTDLSCSTALHTAAAQGHI------------------------- 48
            L  LL        +   +    TALH AA  G                           
Sbjct: 24  FLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH 83

Query: 49  --------DVVNFLLE---------IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSK 91
                        LL+          D+ L +       T    AA             +
Sbjct: 84  LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR 143

Query: 92  DPSTGFRTDKK---GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 148
           D     + + +   G T LH+AV  ++ ++V  L      + K E   G T LH+A++  
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ 203

Query: 149 RTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKD 200
              ++  LL   G D  +    G +PL  A    N  L  LL+  GA   +D
Sbjct: 204 AASVLELLLK-AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPED 254

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (146), Expect = 4e-11
 Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 15/149 (10%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKI--ARNNGKTVLHSAARMGHLEVVKALVSKDPS 94
           TALH A    H   ++FLL   +    +    + G+T LH AA +G    V+ L +    
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNK------------GNTALH 142
                        H+A + +       L++P PS  +   +              +    
Sbjct: 71  VLVAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 143 IAIKKGRTQIVRCLLSIEGIDVNSLNKAG 171
           +  +               + + + N  G
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENYDG 158

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (146), Expect = 4e-11
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 3/113 (2%)

Query: 100 DKKGQTALHMAVKGQNEDIVLELIR--PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 157
            + G TALH+AV  Q+E  +  L+        L L+++ G TALH+A   G    V  L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 158 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQ 210
           +     + +  + G + L +A ++       +L +   +H +D         Q
Sbjct: 66  AAGAGVLVA-ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.5 bits (145), Expect = 5e-11
 Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 3/105 (2%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
            +G T LH A    H   +  L+            +  GQTALH+A        V +L  
Sbjct: 7   EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66

Query: 125 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNK 169
               V  + +  G+TALH+A +         LL          + 
Sbjct: 67  AGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD 110

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 3e-06
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 5/117 (4%)

Query: 10  QSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNG 69
           Q       +    ++   +   +    T LH A      ++V  L +  ++L K     G
Sbjct: 133 QPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG 192

Query: 70  KTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDIVLELIR 124
           +T LH A       V++ L+    DP+        G+T L  A+   N  +   L  
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTA---RMYGGRTPLGSALLRPNPILARLLRA 246

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.5 bits (163), Expect = 2e-13
 Identities = 42/217 (19%), Positives = 70/217 (32%), Gaps = 41/217 (18%)

Query: 16  VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLE------------------- 56
            ++ELL   P+L++  D      LH + +    ++ +FLL                    
Sbjct: 15  KVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF 74

Query: 57  ------------------IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR 98
                                       N G T LH A      EV + L+    S   +
Sbjct: 75  HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 134

Query: 99  TDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS 158
            DK  Q  LH A    +  ++  L     S +  +D +G T L  A+ +G       L+ 
Sbjct: 135 -DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 193

Query: 159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGA 195
             G + + ++  G    DVA    N ++         
Sbjct: 194 KYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.1 bits (136), Expect = 6e-10
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 52  NFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAV 111
           +  L  +    +I     +  LH AA +G L++++ L     S     DK+G T L  A+
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 112 KGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGID 163
              + D  + L+    +   L DNKG  A  +A+ +   Q+ +  L+   +D
Sbjct: 181 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN-NVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (129), Expect = 4e-09
 Identities = 14/64 (21%), Positives = 23/64 (35%)

Query: 138 NTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH 197
           N  LH A  +     V+ LL  +   +   ++ G  PL  +      E+ S L       
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 198 SKDH 201
           + D 
Sbjct: 61  NLDD 64

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 2e-08
 Identities = 10/46 (21%), Positives = 15/46 (32%)

Query: 37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL 82
            LH A  +     V  LL    +L      +G+  LH +      
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (123), Expect = 3e-08
 Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 3/123 (2%)

Query: 1   MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 60
             +        +    + + L E    V   D      LH AA+ G + ++  L  +  +
Sbjct: 104 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 163

Query: 61  LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL 120
                   G T L  A   GH +    LV K  +     D KG  A  +A+   NE +  
Sbjct: 164 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKK 220

Query: 121 ELI 123
             +
Sbjct: 221 FFL 223

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 14/51 (27%), Positives = 20/51 (39%)

Query: 105 TALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 155
             LH A        V EL+   PS+L  +D  G   LH ++     +I   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSF 52

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 71  TVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE 116
             LH A        V+ L+   PS   + D+ G+  LH +V  Q  
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 68.6 bits (166), Expect = 2e-13
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 2/100 (2%)

Query: 98  RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLL 157
           R  K G TALH+A      +++  LI+    V  ++D  G T LH A   G+ +  R L+
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILV 252

Query: 158 SIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH 197
                D+ ++NK G++  DVA++     L  L K+    H
Sbjct: 253 E-NLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 65.1 bits (157), Expect = 2e-12
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 21  LGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG 80
           L       +    S  TALH AAA+G+ +V+  L++   ++  I   +G T LH+AA  G
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWG 243

Query: 81  HLEVVKALVSK--DPSTGFRTDKKGQTALHMAVK 112
             E  + LV    D       +K GQTA  +A +
Sbjct: 244 KEEACRILVENLCDMEA---VNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.1 bits (105), Expect = 7e-06
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 66  RNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI 118
           + +   V  +A   G  E V  L+ +     +  +  G TALH A    N D+
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDM 88

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 134 DNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSL 189
                     A   G T+ V  LL   G D+N  N  G + L  A    N ++   
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKF 91

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 36 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEV 84
                A + G  + V  LLE  +++   A  +G T LH A    ++++
Sbjct: 41 GAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDM 88

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (156), Expect = 1e-12
 Identities = 42/204 (20%), Positives = 65/204 (31%), Gaps = 42/204 (20%)

Query: 37  TALHTAAAQGHIDVVNFLLE-IDSNLAKI-ARNN-GKTVLHSAARMGHLEVV-------- 85
           + LH A       +   ++  +  +LA +  +NN  +T LH A      E+         
Sbjct: 4   SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC 63

Query: 86  ------------------------------KALVSKDPSTGFRTDKKGQTALHMAVKGQN 115
                                                 S    T+  G T LH+A     
Sbjct: 64  DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 123

Query: 116 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPL 175
             IV  L+     V   E   G TALH+A+      +V  LL   G DVN +   G SP 
Sbjct: 124 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGYSPY 182

Query: 176 DVAEKLGNTELFSLLKEAGAAHSK 199
            +     +T +   L +    + +
Sbjct: 183 QLTWGRPSTRIQQQLGQLTLENLQ 206

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 22/136 (16%), Positives = 51/136 (37%), Gaps = 1/136 (0%)

Query: 1   MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 60
                     S  +L          +++  T+ +  T LH A+  G++ +V  L+ + ++
Sbjct: 77  HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD 136

Query: 61  LAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVL 120
           +      NG+T LH A  + + ++V  L+            +G +   +     +  I  
Sbjct: 137 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV-TYQGYSPYQLTWGRPSTRIQQ 195

Query: 121 ELIRPDPSVLKLEDNK 136
           +L +     L++    
Sbjct: 196 QLGQLTLENLQMLPES 211

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 68  NGKTVLHSAARMGHLEVVKALVSKDPSTGF---RTDKKGQTALHMA 110
           +G + LH A       +   ++ +           +   QT LH+A
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 137 GNTALHIAIKKGRTQIVRCLLSI---EGIDVNSLNKAGESPLDVA 178
           G++ LH+AI      +   ++     +   +N  N   ++PL +A
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 103 GQTALHMAVKGQNEDIVLELIR---PDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 155
           G + LH+A+  + + + +E+IR    D + L  ++N   T LH+A+   + +I   
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 57

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 61.3 bits (147), Expect = 1e-11
 Identities = 47/208 (22%), Positives = 79/208 (37%), Gaps = 36/208 (17%)

Query: 16  VLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL-------------- 61
           V+ +LL +   L  T D +  T+LH AA     D    LL+  ++               
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 63

Query: 62  -------------------AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKK 102
                                   ++G T L  AAR+    +V+ L++ D       D  
Sbjct: 64  VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA-DNS 122

Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGI 162
           G+TALH A    N + V  L+    +    +D+K  T L +A ++G  +  + LL     
Sbjct: 123 GKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDETPLFLAAREGSYEASKALLD-NFA 180

Query: 163 DVNSLNKAGESPLDVAEKLGNTELFSLL 190
           +    +     P DVA +  + ++  LL
Sbjct: 181 NREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.7 bits (96), Expect = 6e-05
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 83  EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLEL 122
           +V+  L+++        DK G+T+LH+A +    D    L
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 2e-10
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 1   MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 60
                 +   +     ++ LL    ++      S  + L  A     + +V  LL+  +N
Sbjct: 110 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 169

Query: 61  LAKIARNNGKTVLHSAARMGHLEVVKALVSK--DPSTGFRTDKKGQTALHMAVKGQNEDI 118
                  +G + LHSA+  G L +V+ LV    D S     +    T L +A   +  DI
Sbjct: 170 -VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL---KNCHNDTPLMVARSRRVIDI 225

Query: 119 V 119
           +
Sbjct: 226 L 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 1e-09
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)

Query: 67  NNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD 126
            +G T LH A      E V+ L+ +         K G++ L  AV+  +  +V +L+   
Sbjct: 108 YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV-QLLLQH 166

Query: 127 PSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTEL 186
            + +  +   G++ALH A  +G   +VR L+   G D +  N   ++PL VA      ++
Sbjct: 167 GANVNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 2/120 (1%)

Query: 35  CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPS 94
             TALH A      + V  LLE  +++  +   +G++ L  A     L +V+ L+    +
Sbjct: 110 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 169

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
                   G +ALH A       +V  L+R       L++   +T L +A  +    I+R
Sbjct: 170 V-NAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 1e-08
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 68  NGKTVLHSAARMGHLEVVKALVSKDPSTGF---RTDKKGQTALHMAVKGQN 115
           +G T LH A   G+L  V  LV+     G      +   QT LH+AV    
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL 52

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 133 EDNKGNTALHIAIKKGRTQIVRCLLSIE---GIDVNSLNKAGESPLDVAEK 180
           ED  G+T LHIA+ +G    V  L+++    G +++  N   ++PL +A  
Sbjct: 1   ED--GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI 49

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 4e-07
 Identities = 44/210 (20%), Positives = 75/210 (35%), Gaps = 42/210 (20%)

Query: 37  TALHTAAAQGHIDVVNFLLEI-DSNLAKI--ARNNGKTVLH------------------- 74
           T LH A  QG++  V+ L+ +      ++    N  +T LH                   
Sbjct: 5   TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 64

Query: 75  --------------SAARMGHLEVVKA---LVSKDPSTGFRTDKKGQTALHMAVKGQNED 117
                          A        ++A     +         +  G TALH+AV  + ++
Sbjct: 65  SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE 124

Query: 118 IVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDV 177
            V  L+     +  ++   G + L  A++     +V+ LL   G +VN+   +G S L  
Sbjct: 125 TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-GANVNAQMYSGSSALHS 183

Query: 178 AEKLGNTELFSLLKEAGA-AHSKD-HGKPP 205
           A   G   L   L  +GA +  K+ H   P
Sbjct: 184 ASGRGLLPLVRTLVRSGADSSLKNCHNDTP 213

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 103 GQTALHMAVKGQNEDIVLELIRPDPSV---LKLEDNKGNTALHIAIKKGRTQIVRC 155
           G T LH+AV   N   V  L+         L + +N   T LH+A+      +VR 
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 58

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.6 bits (132), Expect = 6e-10
 Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 5/155 (3%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
             L  AA  G  D V  L+   +         G + LH AA+ GH    +  V       
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTE--VLLRAGVS 59

Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
                K           +    ++E++    + +  +D    TALH A +    ++V  L
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE-L 118

Query: 157 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLK 191
           L   G DV++ +K  ++  D++   GN +L  +L+
Sbjct: 119 LIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 13/54 (24%), Positives = 20/54 (37%)

Query: 1   MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFL 54
           + M    W        + ELL ++   V T    C TA   +   G+ D+   L
Sbjct: 99  LKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.2 bits (129), Expect = 1e-09
 Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 10/130 (7%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAK-----IARNNGKTVLHSAARM---GHLEVVKAL 88
            +L  A     I  +        +L +           +T LH A R      L +V  L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 89  VSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKG 148
           V    +   +T K      +  +    E +  +L+    + +++ +  G T L IA +  
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECL--KLLLRGKASIEIANESGETPLDIAKRLK 125

Query: 149 RTQIVRCLLS 158
                  L  
Sbjct: 126 HEHCEELLTQ 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.8 bits (128), Expect = 2e-09
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 10/137 (7%)

Query: 73  LHSAARMGHLEVVKALVSK-----DPSTGFRTDKKGQTALHMAVKGQNE---DIVLELIR 124
           L  A +   +  +    +      +        +  +TALH+AV+  +     IV  L++
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69

Query: 125 PDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNT 184
              ++ K          +  +      +           +   N++GE+PLD+A++L + 
Sbjct: 70  NSGNLDKQTGKGSTALHYCCLTDNAECLKLL--LRGKASIEIANESGETPLDIAKRLKHE 127

Query: 185 ELFSLLKEAGAAHSKDH 201
               LL +A +     H
Sbjct: 128 HCEELLTQALSGRFNSH 144

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 40/122 (32%)

Query: 10  QSRVILVLKELLGEFPNLVMTTDLSCS-----TALHTAAA---QGHIDVVNFLLEIDSNL 61
           ++R I  L +   +  +L     L+       TALH A     +  + +V+FL++   NL
Sbjct: 15  KTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL 74

Query: 62  AK--------------------------------IARNNGKTVLHSAARMGHLEVVKALV 89
            K                                IA  +G+T L  A R+ H    + L 
Sbjct: 75  DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 134

Query: 90  SK 91
             
Sbjct: 135 QA 136

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (123), Expect = 5e-09
 Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 3/123 (2%)

Query: 36  STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPST 95
           +  L TAAA+G ++ V  LLE     A     N          M     V  L+    + 
Sbjct: 4   ADWLATAAARGRVEEVRALLEAG---ANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 96  GFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRC 155
               D    T        +     L ++    + L + D  G   + +A + G   + R 
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 156 LLS 158
           L +
Sbjct: 121 LRA 123

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 6e-09
 Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 4/158 (2%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
             L +AAA+G ++ +  LL+ + N+   A+N          ++G+ E+ + L+ +  +  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVN--AQNGFGRTALQVMKLGNPEIARRLLLRGANPD 60

Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
            +           A  G  + +  + +    + + +EDN+GN  LH+A K+G  ++V  L
Sbjct: 61  LKDRTGFAVIHDAARAGFLDTL--QTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 157 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG 194
           +     +V   N  G++  D+A   G  E+ SL++  G
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 6e-05
 Identities = 23/91 (25%), Positives = 34/91 (37%)

Query: 1   MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 60
                         L   + L EF   V   D   +  LH AA +GH+ VV FL++  ++
Sbjct: 65  TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 124

Query: 61  LAKIARNNGKTVLHSAARMGHLEVVKALVSK 91
                 + G T    A   G  EVV  + + 
Sbjct: 125 NVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 1e-08
 Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 5/156 (3%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
             L  AAA+G +  V  LL  +          GKT L           ++ L        
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL 156
             T               +   V   +    + + + D  G   +H+A+++G T +V   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKV---LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF- 119

Query: 157 LSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE 192
                 D++  +  G +PL++A + G  +L  +L+ 
Sbjct: 120 -LAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 4e-05
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESP 174
           +    L  A  +G  Q VR LL  E +  ++LN+ G++ 
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA 39

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 4/126 (3%)

Query: 37  TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTG 96
             L  ++ +G  D+V  ++    + +         + ++        V    + +     
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKF--LVQFGVNV 60

Query: 97  FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTA--LHIAIKKGRTQIVR 154
              D  G T LH A    N  +   L+    +V  +  +   TA      +++G TQ  +
Sbjct: 61  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 120

Query: 155 CLLSIE 160
            L  ++
Sbjct: 121 FLYGVQ 126

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 47  HIDVVNFLLEIDSNLAKIARNNGKTV--LHSAARMGHLEVVKALVSKDPSTG 96
           ++ V  FL+E  + +  +  ++ +T          G+ +  + L       G
Sbjct: 79  NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 130

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 1/61 (1%)

Query: 1   MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSN 60
                      +V   L E  G     +  +D+  +        +G+     FL  +   
Sbjct: 70  PLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK 128

Query: 61  L 61
           +
Sbjct: 129 M 129

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.6 bits (98), Expect = 1e-05
 Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 7/123 (5%)

Query: 35  CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPS 94
           C      A   G +D V   +        + R                ++          
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVA---KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKG 58

Query: 95  TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR 154
                  K      ++   +     ++L+    +   ++   G TAL         Q ++
Sbjct: 59  ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT----DNQAIK 114

Query: 155 CLL 157
            LL
Sbjct: 115 ALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	437
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.93
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.85
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.2e-36  Score=278.01  Aligned_cols=194  Identities=27%  Similarity=0.306  Sum_probs=176.9

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhC--CcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHH
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEF--PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAAR   78 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~--~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~   78 (437)
                      .||||.||+.|+ .+++++|++.+  +...+..|.+|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+.
T Consensus        10 ~t~Lh~A~~~~~-~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~   87 (255)
T d1oy3d_          10 DTALHLAVIHQH-EPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACR   87 (255)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTT
T ss_pred             CCHHHHHHHcCC-HHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchhhhhhhc
Confidence            499999999999 99999999985  4556788999999999999999999999999999987 6789999999999999


Q ss_pred             cCCHHHHHHHHhCCCCCC----------------------------------------------cccCCCCCcHHHHHHh
Q 013760           79 MGHLEVVKALVSKDPSTG----------------------------------------------FRTDKKGQTALHMAVK  112 (437)
Q Consensus        79 ~g~~~iv~~Ll~~~~~~~----------------------------------------------~~~d~~g~t~Lh~A~~  112 (437)
                      .|+.++++.|++......                                              ..+|.+|.||||+|+.
T Consensus        88 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~  167 (255)
T d1oy3d_          88 VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI  167 (255)
T ss_dssp             TTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHH
T ss_pred             cCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccccc
Confidence            999999999976432211                                              1257889999999999


Q ss_pred             CCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHH
Q 013760          113 GQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  192 (437)
Q Consensus       113 ~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~  192 (437)
                      +++.+++++|++.+....+.++..|+||||+|++.|+.+++++|++ .|+++|.+|..|+||||+|+..++.+++++|++
T Consensus       168 ~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~-~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~  246 (255)
T d1oy3d_         168 HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNPILARLLRA  246 (255)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHH
T ss_pred             ccccccccchhcccccccccccccccccccccccccHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999988867778899999999999999999999999 899999999999999999999999999999999


Q ss_pred             cCCCc
Q 013760          193 AGAAH  197 (437)
Q Consensus       193 ~ga~~  197 (437)
                      +||+.
T Consensus       247 ~Ga~~  251 (255)
T d1oy3d_         247 HGAPE  251 (255)
T ss_dssp             TTCCC
T ss_pred             cCCCC
Confidence            99974

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-33  Score=256.39  Aligned_cols=205  Identities=27%  Similarity=0.341  Sum_probs=191.6

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      ++||.+|..|+ ++.++.+++..+..++.+|.+|+||||+||..|+.+++++|++.+... ...+..+.++++.|+..|+
T Consensus         5 ~~~~~~a~~G~-~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           5 LMVCNLAYSGK-LEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SHHHHHHHTTC-HHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHHTC
T ss_pred             HHHHHHHHhCC-HHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccc-ccccccccccccccccccc
Confidence            57899999999 999999999999999999999999999999999999999999998776 4456778999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccC
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG  161 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  161 (437)
                      .+++++|+++++++.. .|.+|.||||+|+.+|+.+++++|++.+.++ +.+|.+|.||||+|+..++.+++++|++ .+
T Consensus        83 ~~i~~~Ll~~~~d~~~-~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~-~~  159 (223)
T d1uoha_          83 DEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLY-YK  159 (223)
T ss_dssp             HHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TT
T ss_pred             cchhHHHhccCceeEe-eCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhcc-cc
Confidence            9999999999998765 4999999999999999999999999998876 8899999999999999999999999998 89


Q ss_pred             CCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHH
Q 013760          162 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  211 (437)
Q Consensus       162 ~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  211 (437)
                      .+++.+|..|.||||.|+..|+.+++++|++.|+++...+..+.++....
T Consensus       160 ~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A  209 (223)
T d1uoha_         160 ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA  209 (223)
T ss_dssp             CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC
T ss_pred             ceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            99999999999999999999999999999999999998888888876543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-33  Score=257.44  Aligned_cols=208  Identities=26%  Similarity=0.316  Sum_probs=186.0

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCch--hHhhhcCCCcHHHHHHHc
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL--AKIARNNGKTVLHSAARM   79 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~--~~~~~~~G~tpLh~Aa~~   79 (437)
                      ||||.||..|+ .++++.|++.++...+.+|.+|.||||+|+..|+.+++++|+++|+++  ....+..|.+|+|+|+..
T Consensus         2 ~pLh~A~~~g~-~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           2 YPLHQACMENE-FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CHHHHHHHHTC-HHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             HhHHHHHHcCC-HHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            79999999999 999999999999889999999999999999999999999999998765  234677899999999999


Q ss_pred             CCHHHHHHHHhCCCCCC-cccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhc
Q 013760           80 GHLEVVKALVSKDPSTG-FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  158 (437)
Q Consensus        80 g~~~iv~~Ll~~~~~~~-~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  158 (437)
                      +..++++.++..+.... ...+..+.||++.++..++.++++.|+..+... +.+|.+|+||||+|+..|+.+++++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhcccccccccccc
Confidence            99999999988876543 234678999999999999999999999988776 7789999999999999999999999999


Q ss_pred             ccCCCccccccCCCCHHHHHHHcCcHHHHHHHHH-cCCCcccCCCCCCChHHHH
Q 013760          159 IEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE-AGAAHSKDHGKPPSATKQL  211 (437)
Q Consensus       159 ~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~-~ga~~~~~~~~~~~~~~~~  211 (437)
                      ..+.++|.+|.+|+||||+|+..++.+++++|++ .|+++...+..+.++....
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A  213 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA  213 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGC
T ss_pred             cccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHH
Confidence            6568899999999999999999999999999996 5999988888877776543

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-32  Score=248.69  Aligned_cols=185  Identities=26%  Similarity=0.323  Sum_probs=171.9

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +||||.||..|+ .|+++++++...... ..+..+.++++.|+..|+.+++++|+++++++ +.+|.+|.||||+|+..|
T Consensus        38 ~TpLh~Aa~~g~-~e~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~  114 (223)
T d1uoha_          38 RTALHWACSAGH-TEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKN  114 (223)
T ss_dssp             CCHHHHHHHHTC-HHHHHHHHHHTCCSC-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHhhh-hcccccccccccccc-cccccccccccccccccccchhHHHhccCcee-EeeCCCCCchhhHHHHcC
Confidence            699999999999 999999999876643 56778999999999999999999999999887 778999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhccc
Q 013760           81 HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIE  160 (437)
Q Consensus        81 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~  160 (437)
                      +.+++++|++++.++.. +|..|.||||+|+..++.+++++|.+.+.++ +.+|.+|+||||.|+..|+.+++++|++ .
T Consensus       115 ~~e~~~~Ll~~g~d~~~-~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i-~~~d~~g~TpL~~Aa~~g~~~~v~~LL~-~  191 (223)
T d1uoha_         115 RHEIAVMLLEGGANPDA-KDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEGNTPLHLACDEERVEEAKLLVS-Q  191 (223)
T ss_dssp             CHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHHH-T
T ss_pred             CHHHHHHHHHCCCCCCC-cCCCCCccchhhhhcCCcchhhhhcccccee-eeccCCCCceeccccccCcHHHHHHHHH-C
Confidence            99999999999998864 4899999999999999999999999988775 9999999999999999999999999999 8


Q ss_pred             CCCccccccCCCCHHHHHHHcCcHHHHHHHHH
Q 013760          161 GIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  192 (437)
Q Consensus       161 g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~  192 (437)
                      |+|++.+|.+|+||||+| +.|+.++++.|++
T Consensus       192 Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         192 GASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             TCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             CCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            999999999999999998 5699999998874

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.6e-32  Score=244.80  Aligned_cols=194  Identities=24%  Similarity=0.259  Sum_probs=171.9

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhC---CcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHH
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEF---PNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAA   77 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~---~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa   77 (437)
                      .||||+|+..|+ .++++.|++..   +..++..|.+|.||||+|+..|+.+++++|++.|+++ +..|.+|.||||.|+
T Consensus         3 ~t~Lh~A~~~g~-~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           3 DSFLHLAIIHEE-KALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCTTHHHHHTTC-SSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHH
T ss_pred             ChHHHHHHHcCC-HHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccc-ccccccccccccccc
Confidence            599999999999 77777666542   3346788999999999999999999999999999987 778999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCC-----cccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHH
Q 013760           78 RMGHLEVVKALVSKDPSTG-----FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQI  152 (437)
Q Consensus        78 ~~g~~~iv~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~i  152 (437)
                      ..|+.++++.|++.+....     .....+|.||||.|+..++.+++++++..+..+....+.+|+||||+|++.|+.++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            9999999999998765432     22356689999999999999999999999888756667789999999999999999


Q ss_pred             HHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCc
Q 013760          153 VRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  197 (437)
Q Consensus       153 v~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~  197 (437)
                      +++|++ .|+|++.+|.+|.||||+|++.++.+++++|.+.+.+.
T Consensus       161 v~~Ll~-~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~  204 (221)
T d1iknd_         161 VSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  204 (221)
T ss_dssp             HHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             HHHHHh-cCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCcc
Confidence            999999 89999999999999999999999999999999987764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.8e-30  Score=240.38  Aligned_cols=197  Identities=26%  Similarity=0.356  Sum_probs=151.2

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCch--------------------
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL--------------------   61 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~--------------------   61 (437)
                      |+||.|+++|+ +|+|+.|+++++++....+..|.||||+|+..|+.+++++|++.+...                    
T Consensus         7 ~~L~~Ai~~~~-~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (285)
T d1wdya_           7 HLLIKAVQNED-VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSV   85 (285)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCC-HHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCc
Confidence            68999999999 999999999998865566778999999999999999999999865432                    


Q ss_pred             -------------------------------------------------------hHhhhcCCCcHHHHHHHcCCHHHHH
Q 013760           62 -------------------------------------------------------AKIARNNGKTVLHSAARMGHLEVVK   86 (437)
Q Consensus        62 -------------------------------------------------------~~~~~~~G~tpLh~Aa~~g~~~iv~   86 (437)
                                                                             ....+..|.||||+|+..|+.++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  165 (285)
T d1wdya_          86 KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK  165 (285)
T ss_dssp             HHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHH
T ss_pred             cccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHH
Confidence                                                                   0011123555566666666666666


Q ss_pred             HHHhC-CCCCCcccCCCCCcHHHHHHhC----CCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccC
Q 013760           87 ALVSK-DPSTGFRTDKKGQTALHMAVKG----QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEG  161 (437)
Q Consensus        87 ~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~----g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  161 (437)
                      +|++. +.++. ..|..|.++++.+...    +..+++++|++++.++ +.+|.+|.||||.|+..|+.+++++|++..|
T Consensus       166 ~Ll~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g  243 (285)
T d1wdya_         166 ILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEH  243 (285)
T ss_dssp             HHHHTSCCCTT-CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred             HHHhccCCCcc-cccCCCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCCCCCccchhhhcCcHHHHHHHHHcCC
Confidence            55543 33332 2355555555443322    2234566666666554 7789999999999999999999999998789


Q ss_pred             CCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCC
Q 013760          162 IDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDH  201 (437)
Q Consensus       162 ~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~  201 (437)
                      +++|.+|.+|.||||+|++.++.+++++|+++||+++..+
T Consensus       244 ~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         244 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            9999999999999999999999999999999999987643

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-30  Score=254.45  Aligned_cols=208  Identities=30%  Similarity=0.432  Sum_probs=166.5

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +||||+||..|+ .++|+.|++.+.+ ++..|.+|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|
T Consensus         1 ~TpL~~Aa~~g~-~~~v~~Ll~~g~~-in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi-~~~~~~g~t~L~~A~~~g   77 (408)
T d1n11a_           1 LTPLHVASFMGH-LPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIG   77 (408)
T ss_dssp             CCHHHHHHHHTC-HHHHHHHHHTTCC-SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHT
T ss_pred             CChHHHHHHCcC-HHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcC
Confidence            699999999999 9999999999876 5678999999999999999999999999999987 677888888988888888


Q ss_pred             CHHHHHHHHh------------------------------------------------------------------CCCC
Q 013760           81 HLEVVKALVS------------------------------------------------------------------KDPS   94 (437)
Q Consensus        81 ~~~iv~~Ll~------------------------------------------------------------------~~~~   94 (437)
                      +.+++++|++                                                                  .+.+
T Consensus        78 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~  157 (408)
T d1n11a_          78 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH  157 (408)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCC
Confidence            7776666553                                                                  2333


Q ss_pred             CCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCc---------------------------------------------
Q 013760           95 TGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSV---------------------------------------------  129 (437)
Q Consensus        95 ~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~---------------------------------------------  129 (437)
                      +.. .+.+|.+|||.|+..|+.+++++|++++.++                                             
T Consensus       158 ~~~-~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~  236 (408)
T d1n11a_         158 PNA-AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH  236 (408)
T ss_dssp             TTC-CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CCc-CCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHH
Confidence            322 3567788888888888888888877654321                                             


Q ss_pred             --------------------cccCCCCCChHHHHHHHcCcHHHHHHhhcc------------------------------
Q 013760          130 --------------------LKLEDNKGNTALHIAIKKGRTQIVRCLLSI------------------------------  159 (437)
Q Consensus       130 --------------------~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~------------------------------  159 (437)
                                          .+..|.+|.||||.|+..++.+++++|++.                              
T Consensus       237 ~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~l  316 (408)
T d1n11a_         237 LAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL  316 (408)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHH
T ss_pred             HHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeee
Confidence                                122455677777777777777777766642                              


Q ss_pred             --cCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHHH
Q 013760          160 --EGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQLK  212 (437)
Q Consensus       160 --~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~~  212 (437)
                        .|+++|.+|.+|+||||+|++.|+.+++++|+++|++++..++.+.++.....
T Consensus       317 l~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~  371 (408)
T d1n11a_         317 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK  371 (408)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHH
T ss_pred             ccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence              46778889999999999999999999999999999999888888888776543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=6.3e-31  Score=245.40  Aligned_cols=190  Identities=20%  Similarity=0.285  Sum_probs=164.8

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCC-------cccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHH
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFP-------NLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVL   73 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~-------~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpL   73 (437)
                      +||||+||..|+ .++++.|+....       ..++.+|.+|.||||+|+..|+.++|++|+++|+++ +.+|.+|.|||
T Consensus        34 ~T~Lh~A~~~g~-~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~t~l  111 (277)
T d2fo1e1          34 RTVLHWIASNSS-AEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSAL  111 (277)
T ss_dssp             CCHHHHHHCTTC-CSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHH
T ss_pred             ccHHHHHHHcCC-HHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccccc-ccccccccccc
Confidence            599999999999 999988865421       235678999999999999999999999999999997 67899999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCC--------C--------------------------------------CCcccCCCCCcHH
Q 013760           74 HSAARMGHLEVVKALVSKDP--------S--------------------------------------TGFRTDKKGQTAL  107 (437)
Q Consensus        74 h~Aa~~g~~~iv~~Ll~~~~--------~--------------------------------------~~~~~d~~g~t~L  107 (437)
                      |+|+..|+.++++.+.....        +                                      .....+..|.|||
T Consensus       112 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  191 (277)
T d2fo1e1         112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL  191 (277)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH
T ss_pred             cchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcc
Confidence            99999999998888854310        0                                      0011356789999


Q ss_pred             HHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHH
Q 013760          108 HMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF  187 (437)
Q Consensus       108 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~  187 (437)
                      |.++..++.+++++++...+...+.+|..|+||||+|+..|+.+++++|++ .|+|+|.+|..|+||||+|++.|+.+++
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~-~gadin~~d~~G~T~L~~A~~~~~~~iv  270 (277)
T d2fo1e1         192 HYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIV  270 (277)
T ss_dssp             HHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             ccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            999999999999987776666668899999999999999999999999999 8999999999999999999999999999


Q ss_pred             HHHHHc
Q 013760          188 SLLKEA  193 (437)
Q Consensus       188 ~~L~~~  193 (437)
                      ++|.+.
T Consensus       271 ~lL~~c  276 (277)
T d2fo1e1         271 DIFDRC  276 (277)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            999763

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=2.7e-30  Score=243.35  Aligned_cols=205  Identities=25%  Similarity=0.321  Sum_probs=183.4

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      ||||.||..|+ +++|++|++++.+ ++..|.+|.||||+|+..|+.++|++|++++.+. ...+..+.+||+.|+..|+
T Consensus        42 t~l~~A~~~G~-~~~v~~Ll~~Gad-vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          42 AVFLAACSSGD-TEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             HHHHHHHHHTC-HHHHHHHHHHCCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             hHHHHHHHcCC-HHHHHHHHHCCCC-CCccCCCCCcHHHHHHhcCCceeeeeeccccccc-ccccccccccccccccccc
Confidence            78999999999 9999999999877 5678999999999999999999999999999886 5678889999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCC--------------------------CccccCCC
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDP--------------------------SVLKLEDN  135 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~--------------------------~~~~~~d~  135 (437)
                      .++++.|++.+..... .|.+|.+|+++|+..+..+.++.++....                          ......+.
T Consensus       119 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (291)
T d1s70b_         119 LDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (291)
T ss_dssp             HHHHHHHHHTTCCTTC-CCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             cchhhcccccCccccc-ccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccC
Confidence            9999999999987764 48999999999999999988888774321                          11245678


Q ss_pred             CCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHH
Q 013760          136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  211 (437)
Q Consensus       136 ~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  211 (437)
                      +|.||||.|+..|+.++++.|++ .|+|+|.+|..|.||||+|+..|+.+++++|+++|++.+..+..+.++....
T Consensus       198 ~g~t~L~~a~~~~~~~~~~~Ll~-~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A  272 (291)
T d1s70b_         198 SGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA  272 (291)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             CCCChhhHHHHcCChhhhccccc-ceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            99999999999999999999998 8999999999999999999999999999999999999988877777766543

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.4e-29  Score=232.15  Aligned_cols=179  Identities=28%  Similarity=0.404  Sum_probs=157.5

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCch--hHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHH
Q 013760           30 TTDLSCSTALHTAAAQGHIDVVNFLLEIDSNL--AKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTAL  107 (437)
Q Consensus        30 ~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~--~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L  107 (437)
                      -.|++|.||||+||..|+.+++++|++.|++.  .+.+|.+|.||||+|+..|+.+++++|+++|+++... |.+|.|||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~-d~~g~tpL   82 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA-ERGGHTAL   82 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCC-CTTSCCHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccccccc-ccccchhh
Confidence            46889999999999999999999999987653  3567889999999999999999999999999998754 99999999


Q ss_pred             HHHHhCCCHHHHHHhhcCCCC----------------------------------------------ccccCCCCCChHH
Q 013760          108 HMAVKGQNEDIVLELIRPDPS----------------------------------------------VLKLEDNKGNTAL  141 (437)
Q Consensus       108 h~A~~~g~~~iv~~Ll~~~~~----------------------------------------------~~~~~d~~G~TpL  141 (437)
                      |+|+..++.++++.|++....                                              .++.+|.+|.|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            999999999999998753211                                              1345788999999


Q ss_pred             HHHHHcCcHHHHHHhhcccCCCccc-cccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHH
Q 013760          142 HIAIKKGRTQIVRCLLSIEGIDVNS-LNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQ  210 (437)
Q Consensus       142 h~A~~~g~~~iv~~Ll~~~g~~~n~-~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~  210 (437)
                      |+|+..++.+++++|++ .+.+.+. .+..|.||||+|++.++.+++++|+++|++....++.+.++...
T Consensus       163 h~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~  231 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS  231 (255)
T ss_dssp             HHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cccccccccccccchhc-ccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            99999999999999999 6777665 56789999999999999999999999999998888888777654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-28  Score=220.16  Aligned_cols=206  Identities=21%  Similarity=0.221  Sum_probs=158.4

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhh---CCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHH
Q 013760            1 MDMIHFMWQQSRVILVLKELLGE---FPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAA   77 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~---~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa   77 (437)
                      +||||.||..|+ .++++.|++.   ....++.+|.+|.||||+|+..|+.++++.|+++|++. +..+.+|.++++.|.
T Consensus         4 ~TpLh~A~~~g~-~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           4 DTPLHIAVVQGN-LPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLAC   81 (228)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             ccHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccc-ccccccccccccccc
Confidence            599999999999 9999999863   33335678999999999999999999999999999887 567788999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCC---cccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHH
Q 013760           78 RMGHLEVVKALVSKDPSTG---FRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVR  154 (437)
Q Consensus        78 ~~g~~~iv~~Ll~~~~~~~---~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~  154 (437)
                      ..++.++++.+........   ...+..+.++|+.+.........+.|...........+..|.+|||.|+..+..++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            9999988887766433221   2234456677777777777777777776666555566667777777777777777777


Q ss_pred             HhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHH
Q 013760          155 CLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATK  209 (437)
Q Consensus       155 ~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~  209 (437)
                      .+++ .|.+.+.+|..|.||||+|+..|+.+++++|+++|++++..+..+.++..
T Consensus       162 ~~~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~  215 (228)
T d1k1aa_         162 LLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM  215 (228)
T ss_dssp             HHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTT
T ss_pred             hhhh-hccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            7777 67777777777777777777777777777777777777666666655543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=4.4e-29  Score=232.78  Aligned_cols=207  Identities=19%  Similarity=0.243  Sum_probs=171.5

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHH--------hcCCchhHhhhcCCCcHH
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLL--------EIDSNLAKIARNNGKTVL   73 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll--------~~~~~~~~~~~~~G~tpL   73 (437)
                      ||||++++.+...++++.|.+.+.+..  .+..|+||||+||..|+.++|+.|+        +.|+++ +.+|.+|.|||
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~--~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d~~G~TpL   78 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNII--DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPL   78 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTC--CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcC--CCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccCCCCCeee
Confidence            788866555442666666666655532  2246999999999999999998874        557777 67899999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCC---------------------------
Q 013760           74 HSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPD---------------------------  126 (437)
Q Consensus        74 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~---------------------------  126 (437)
                      |+|+..|+.+++++|+++|++++.. |.+|.|||+.|+..++.++++.+....                           
T Consensus        79 h~A~~~g~~~iv~~Ll~~Gad~n~~-~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKAGADPTIY-NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD  157 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSCCC-CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTT
T ss_pred             ccccccccccccccccccccccccc-cccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccc
Confidence            9999999999999999999998754 899999999999999988887765321                           


Q ss_pred             -------------------CCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHH
Q 013760          127 -------------------PSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELF  187 (437)
Q Consensus       127 -------------------~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~  187 (437)
                                         ....+..+..|.||||.++..++.+++++++...+.+.+.+|..|.||||+|++.|+.+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv  237 (277)
T d2fo1e1         158 QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV  237 (277)
T ss_dssp             HHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             ccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHH
Confidence                               0012345678999999999999999999888778999999999999999999999999999


Q ss_pred             HHHHHcCCCcccCCCCCCChHHHHH
Q 013760          188 SLLKEAGAAHSKDHGKPPSATKQLK  212 (437)
Q Consensus       188 ~~L~~~ga~~~~~~~~~~~~~~~~~  212 (437)
                      ++|+++|++.+..+..+.++.....
T Consensus       238 ~~Ll~~gadin~~d~~G~T~L~~A~  262 (277)
T d2fo1e1         238 MYLIQQGASVEAVDATDHTARQLAQ  262 (277)
T ss_dssp             HHHHHTTCCSSCCCSSSCCHHHHHH
T ss_pred             HHHHHCcCCCCCcCCCCCCHHHHHH
Confidence            9999999999888888888766544

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.2e-28  Score=205.10  Aligned_cols=154  Identities=28%  Similarity=0.488  Sum_probs=99.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCH
Q 013760           37 TALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE  116 (437)
Q Consensus        37 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~  116 (437)
                      +|||+||..|+.++|+.|+++|+++ +.+|.+|.||||+|+ .|+.+++++|++.+++.... +.+|.++++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~-~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLK-DRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-cccccccccccccccccccc-cccCccccccccccccc
Confidence            5666666666666666666666665 556666666666554 56666666666666665433 56666666666666666


Q ss_pred             HHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcC
Q 013760          117 DIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAG  194 (437)
Q Consensus       117 ~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~g  194 (437)
                      +.++.++..+... +..|..|.+|||.|+..++.+++++|++..+.+.+.+|..|+||||+|++.++.+++++|+++|
T Consensus        80 ~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          80 DTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            6666666665554 5566666666666666666666666666444466666666666666666666666666666655

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1e-27  Score=204.46  Aligned_cols=152  Identities=25%  Similarity=0.326  Sum_probs=142.7

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      ||||.||..|+ +|+|+.|++++.+ ++..|.+|.||||+|+ .|+.+++++|+++++++ +..+.+|.+|++.++..|+
T Consensus         3 ~~Lh~Aa~~g~-~~~v~~Ll~~g~d-~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGD-LEQLTSLLQNNVN-VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTC-HHHHHHHTTSCCC-TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCC-HHHHHHHHHCCCC-cCccCCcccccccccc-ccccccccccccccccc-ccccccCcccccccccccc
Confidence            69999999999 9999999999887 4678999999999886 79999999999999987 7789999999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhc
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  158 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  158 (437)
                      .+.++.|++.+.+.... |..|.+|||+|+..++.++++.|+++++...+.+|.+|.||||+|++.++.+++++|++
T Consensus        79 ~~~~~~l~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~  154 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA  154 (156)
T ss_dssp             HHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccccccccccc-ccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999987754 89999999999999999999999999987679999999999999999999999999998

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.7e-27  Score=231.04  Aligned_cols=188  Identities=28%  Similarity=0.406  Sum_probs=163.8

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCccc--------------------------------ccCCCCCCcHHHHHHHcCCH
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLV--------------------------------MTTDLSCSTALHTAAAQGHI   48 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~--------------------------------~~~d~~g~TpLh~Aa~~g~~   48 (437)
                      ++|||.|+..|+ .++++.|++++.+..                                ...+.+|.||||+|+..++.
T Consensus       166 ~~~L~~A~~~~~-~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~  244 (408)
T d1n11a_         166 LTPLHVAVHHNN-LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA  244 (408)
T ss_dssp             CCHHHHHHHTTC-HHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             chHHHHHHHcCC-HHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcH
Confidence            478999999999 999999998765421                                12345667777778888888


Q ss_pred             HHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCC
Q 013760           49 DVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPS  128 (437)
Q Consensus        49 ~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~  128 (437)
                      ++++.+++.+... +..|..|.|||+.|+..++.+++++|++++.++... +..+.||||.++..++.++++++++.+.+
T Consensus       245 ~~~~~~~~~~~~~-~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~-~~~~~t~L~~~~~~~~~~~~~~ll~~g~~  322 (408)
T d1n11a_         245 EMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT-TRMGYTPLHVASHYGNIKLVKFLLQHQAD  322 (408)
T ss_dssp             HHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CSSCCCHHHHHHHSSCSHHHHHHHHTTCC
T ss_pred             hHhhhhhcccccc-ccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccc-cccccccchhhcccCcceeeeeecccccc
Confidence            8888888776665 567888999999999999999999999999987754 78899999999999999999999999877


Q ss_pred             ccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHc
Q 013760          129 VLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  193 (437)
Q Consensus       129 ~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~  193 (437)
                      + +.+|.+|+||||+|++.|+.+++++|++ .|+|+|.+|.+|+||||+|++.|+.+++++|...
T Consensus       323 i-n~~d~~G~T~Lh~A~~~g~~~iv~~Ll~-~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~  385 (408)
T d1n11a_         323 V-NAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV  385 (408)
T ss_dssp             T-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             c-cccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            6 8999999999999999999999999999 8999999999999999999999999999877543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.3e-27  Score=212.67  Aligned_cols=177  Identities=24%  Similarity=0.275  Sum_probs=155.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCc--ccCCCCCcHHHHHHhC
Q 013760           36 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGF--RTDKKGQTALHMAVKG  113 (437)
Q Consensus        36 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~--~~d~~g~t~Lh~A~~~  113 (437)
                      +||||+||..|+.++++.|++.++...+.+|.+|+||||+|+..|+.+++++|+++++++..  ..|..|.+|+|+++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            58999999999999999999987777788999999999999999999999999999887653  3577899999999999


Q ss_pred             CCHHHHHHhhcCCCCc-cccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHH
Q 013760          114 QNEDIVLELIRPDPSV-LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  192 (437)
Q Consensus       114 g~~~iv~~Ll~~~~~~-~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~  192 (437)
                      +..++++.++..+... ....+..+.|||+.++..++.+++++|+. .|.+.+..|..|+||||+|+..++.++++.|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhh-hcccccccCCCCCCccchhhhcccccccccccc
Confidence            9999999998876542 35678889999999999999999999999 899999999999999999999999999999999


Q ss_pred             cCC-CcccCCCCCCChHHHHHH
Q 013760          193 AGA-AHSKDHGKPPSATKQLKQ  213 (437)
Q Consensus       193 ~ga-~~~~~~~~~~~~~~~~~~  213 (437)
                      .|. +....+..+.++......
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~  181 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALA  181 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHH
T ss_pred             cccccccccccccCCchhhhcc
Confidence            874 555566667777665443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4e-27  Score=201.30  Aligned_cols=149  Identities=26%  Similarity=0.392  Sum_probs=71.7

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHH
Q 013760           39 LHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI  118 (437)
Q Consensus        39 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~i  118 (437)
                      ||.||..|+.++|+.|++.+....+..|..|+||||+|+. |+.+++++|++.+.++... +..|.+|++.++..++.++
T Consensus         6 L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~-~~~~~~~l~~~~~~~~~~~   83 (156)
T d1bd8a_           6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTGFLDT   83 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccccccc-ccccccccccccccccccc
Confidence            4455555555555544443222223444445555554432 4444455555444444322 4444555555555555555


Q ss_pred             HHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHH
Q 013760          119 VLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  192 (437)
Q Consensus       119 v~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~  192 (437)
                      ++.+++.+.++ +.+|.+|+||||+|+..|+.+++++|++  |++++.+|.+|+||||+|++.|+.+++++|++
T Consensus        84 ~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~~--~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_          84 LKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHT--TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             ccccccccccc-ccccCCCCeeeccccccccccccccccc--cccccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            55555544433 4445555555555555555555554442  34555555555555555555555555555544

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=5.9e-27  Score=199.04  Aligned_cols=150  Identities=29%  Similarity=0.389  Sum_probs=127.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCC
Q 013760           36 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN  115 (437)
Q Consensus        36 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~  115 (437)
                      .||||.||+.|+.++|++|+++|++..  .|..|.||||+|+..++.++++.++......... +..+.++++.++...+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR-TKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCcccccccccccccccccccccccccccc-cccccccccccccccc
Confidence            488888998999999999998888753  6788889999999888888888888877766543 6777888888888888


Q ss_pred             HHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHH
Q 013760          116 EDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL  190 (437)
Q Consensus       116 ~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L  190 (437)
                      .++++++...+.+. +.+|.+|+||||+|+..|+.+++++|++ .|+|++.+|.+|.||||+|+..|+.+++++|
T Consensus        80 ~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~-~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccc-cccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            88888888887765 7788889999999999999999998888 7889998899999999999999999988876

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=3.7e-26  Score=204.04  Aligned_cols=173  Identities=27%  Similarity=0.361  Sum_probs=139.9

Q ss_pred             HHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCH-----------
Q 013760           14 ILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL-----------   82 (437)
Q Consensus        14 ~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~-----------   82 (437)
                      .|+|+.|+++++++....|.+|.||||+||..|+.+++++|++.|+++ +.++..+.++++.++..++.           
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccccc
Confidence            477888888877754446778888888888888888888888877765 45666667777776665544           


Q ss_pred             -----------------------HHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCCh
Q 013760           83 -----------------------EVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNT  139 (437)
Q Consensus        83 -----------------------~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~T  139 (437)
                                             ...+.|.+.+.+... .+..|.|||+.++..+..++++.+++.+.++ +..|.+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g~T  158 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA-ADNSGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKDET  158 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccccc-cCCCCCCcchhhcccCcceeeeeeccccccc-ccccccccc
Confidence                                   455555666666543 4888999999999999999999999988775 888999999


Q ss_pred             HHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHH
Q 013760          140 ALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLL  190 (437)
Q Consensus       140 pLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L  190 (437)
                      |||+|+..|+.+++++|++ .|+|++.+|..|+||||+|++.|+.+++++|
T Consensus       159 pL~~A~~~g~~~~v~~Ll~-~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         159 PLFLAAREGSYEASKALLD-NFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccchhccccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999998 8999999999999999999999999999876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6e-27  Score=200.19  Aligned_cols=151  Identities=23%  Similarity=0.310  Sum_probs=139.2

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      +.||.||..|+ +++|++|+++++..++..|..|+||||+|+ .|+.+++++|++++.++ +..+.+|.+|++.++..++
T Consensus         4 ~~L~~Aa~~g~-~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGD-VQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTC-HHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCC-HHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccc-ccccccccccccccccccc
Confidence            47999999999 999999999877778889999999999987 58999999999999987 6788899999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhc
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  158 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  158 (437)
                      .++++.+++.+++++. +|++|.||||+|+..|+.+++++|+ .+.++ +.+|.+|+||||+|++.|+.+++++|++
T Consensus        81 ~~~~~~~l~~~~~~n~-~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_          81 LDTLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVVSFLA-AESDL-HRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHH-TTSCT-TCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cccccccccccccccc-ccCCCCeeecccccccccccccccc-ccccc-cccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999998875 4899999999999999999999887 45555 8899999999999999999999999997

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.94  E-value=2.9e-27  Score=222.37  Aligned_cols=184  Identities=26%  Similarity=0.383  Sum_probs=162.2

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMG   80 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g   80 (437)
                      +||||.|+..|+ .|++++|++.+.+. ...+..+.|||+.|+..|+.++++.|++.+... ...|.+|.+|+++|+..|
T Consensus        74 ~T~L~~A~~~g~-~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~a~~~~  150 (291)
T d1s70b_          74 LTALHQACIDDN-VDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEA  150 (291)
T ss_dssp             CBHHHHHHHTTC-HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHH
T ss_pred             CcHHHHHHhcCC-ceeeeeeccccccc-ccccccccccccccccccccchhhcccccCccc-ccccccCccccccccccc
Confidence            589999999999 99999999998763 467888999999999999999999999998876 668889999999999999


Q ss_pred             CHHHHHHHHhCCC--------------------------CCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCC
Q 013760           81 HLEVVKALVSKDP--------------------------STGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLED  134 (437)
Q Consensus        81 ~~~iv~~Ll~~~~--------------------------~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d  134 (437)
                      +.+.++.++....                          ......+..|.||||.|+..|+.++++.|++.+.++ +.+|
T Consensus       151 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~di-n~~~  229 (291)
T d1s70b_         151 MEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKD  229 (291)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCC
T ss_pred             cchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecc-cccc
Confidence            9999988875321                          112235788999999999999999999999999876 8899


Q ss_pred             CCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHc
Q 013760          135 NKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEA  193 (437)
Q Consensus       135 ~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~  193 (437)
                      .+|+||||+|+..|+.+++++|++ .|+|+|.+|..|+||||+|++    +++++|.+.
T Consensus       230 ~~g~TpL~~A~~~g~~~iv~lLl~-~Gadv~~~d~~G~TaL~~A~e----~~~~~L~~~  283 (291)
T d1s70b_         230 YDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVADE----DILGYLEEL  283 (291)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTTTSCCS----GGGHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHH----HHHHHHHHH
Confidence            999999999999999999999999 899999999999999999975    455555543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=6.6e-26  Score=192.45  Aligned_cols=149  Identities=24%  Similarity=0.294  Sum_probs=137.8

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      ||||.||+.|+ .++|+.|++++++..  .|..|.||||+|+..++.++++.++...... ...+..+.++++.++...+
T Consensus         4 t~L~~Aa~~g~-~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           4 KKLLEAARAGQ-DDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHTC-HHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred             HHHHHHHHCCC-HHHHHHHHHcCCCcc--cccCCCccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            79999999999 999999999998753  6899999999999999999999999887765 4566778999999999999


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHh
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCL  156 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L  156 (437)
                      .+.+++++..+.+... +|.+|.||||+|+..|+.+++++|++.+.++ +.+|.+|.||||+|+.+|+.+++++|
T Consensus        80 ~~~~~~l~~~~~~~~~-~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ceeeecccccCCcccc-ccccCchHHHhhhhcchhheeeeccccccCC-cccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999998875 4999999999999999999999999999876 88999999999999999999999976

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.8e-26  Score=207.38  Aligned_cols=174  Identities=28%  Similarity=0.284  Sum_probs=149.0

Q ss_pred             CCCcHHHHHHHcCCHHHHH----HHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHH
Q 013760           34 SCSTALHTAAAQGHIDVVN----FLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHM  109 (437)
Q Consensus        34 ~g~TpLh~Aa~~g~~~iv~----~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~  109 (437)
                      +|+||||+|+..|+.++++    .+...+.++ +.+|.+|+||||+|+..|+.+++++|++.++++.. .|.+|.||||.
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~-~d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC-CCTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCCCCCccccccccccccccccccccccccccc-ccccccccccc
Confidence            6999999999999975544    555566665 67899999999999999999999999999999875 49999999999


Q ss_pred             HHhCCCHHHHHHhhcCCC-----CccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccc-cCCCCHHHHHHHcCc
Q 013760          110 AVKGQNEDIVLELIRPDP-----SVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLN-KAGESPLDVAEKLGN  183 (437)
Q Consensus       110 A~~~g~~~iv~~Ll~~~~-----~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n-~~G~T~L~~A~~~~~  183 (437)
                      |+..++.++++.|+..+.     ...+....+|.||||.|+..++.+++++|+. .|.+++..+ .+|.||||+|+..|+
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~G~T~L~~A~~~g~  157 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS-LGADVNAQEPCNGRTALHLAVDLQN  157 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecc-cCcccccccccCCCCcccccccccc
Confidence            999999999999998653     2334566679999999999999999999998 788887765 579999999999999


Q ss_pred             HHHHHHHHHcCCCcccCCCCCCChHHH
Q 013760          184 TELFSLLKEAGAAHSKDHGKPPSATKQ  210 (437)
Q Consensus       184 ~~i~~~L~~~ga~~~~~~~~~~~~~~~  210 (437)
                      .+++++|+++|++.+..+..+.++...
T Consensus       158 ~~~v~~Ll~~gad~~~~~~~G~tpl~~  184 (221)
T d1iknd_         158 PDLVSLLLKCGADVNRVTYQGYSPYQL  184 (221)
T ss_dssp             HHHHHHHHTTTCCSCCCCTTCCCGGGG
T ss_pred             HHHHHHHHhcCCcccccCCCCCCHHHH
Confidence            999999999999999888888877654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=1.3e-27  Score=231.47  Aligned_cols=189  Identities=22%  Similarity=0.182  Sum_probs=148.0

Q ss_pred             chhhHHHHcCCcHHHHHH---HHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhh--cCCCcHHHHH
Q 013760            2 DMIHFMWQQSRVILVLKE---LLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIAR--NNGKTVLHSA   76 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~---Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~--~~G~tpLh~A   76 (437)
                      ||||+||++|+ .++++.   |++.+.+ ++.+|.+|+||||+||+.||.++|++|++.|++. +..+  .+|.||||+|
T Consensus        92 t~L~~Aa~~g~-~~~~~~~~~L~~~~~~-in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~L~~A  168 (346)
T d2ajaa1          92 VICFVAAITGC-SSALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHAFRLA  168 (346)
T ss_dssp             HHHHHHHHHCC-HHHHHHHTTC--CCSS-CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHHHHHHH
T ss_pred             cHHHHHHHhCC-HHHHHHHHHHHhCCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCChhHHH
Confidence            79999999999 888776   4555544 6678999999999999999999999999999987 3443  5699999999


Q ss_pred             HHcCCHHHHHHHHhCCCCCCc--ccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCcc------------------------
Q 013760           77 ARMGHLEVVKALVSKDPSTGF--RTDKKGQTALHMAVKGQNEDIVLELIRPDPSVL------------------------  130 (437)
Q Consensus        77 a~~g~~~iv~~Ll~~~~~~~~--~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~------------------------  130 (437)
                      |..||.++|++|++.+++...  ..+.+|.||+|.|+.+|+.+++++|++.+++..                        
T Consensus       169 a~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (346)
T d2ajaa1         169 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR  248 (346)
T ss_dssp             HHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhcc
Confidence            999999999999999876532  224567788889999999999999997653210                        


Q ss_pred             --------ccCCCC----------------CChHHHHHHHcCcHHHHHHhhcccCC----CccccccCCCCHHHHHHHcC
Q 013760          131 --------KLEDNK----------------GNTALHIAIKKGRTQIVRCLLSIEGI----DVNSLNKAGESPLDVAEKLG  182 (437)
Q Consensus       131 --------~~~d~~----------------G~TpLh~A~~~g~~~iv~~Ll~~~g~----~~n~~n~~G~T~L~~A~~~~  182 (437)
                              .....+                +.++|+.|+..++.+++++|++....    +.+..+.+|+||||+|++.|
T Consensus       249 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~G  328 (346)
T d2ajaa1         249 LKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG  328 (346)
T ss_dssp             HHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHT
T ss_pred             chHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcC
Confidence                    000111                23678888888999999999984322    23455568999999999999


Q ss_pred             cHHHHHHHHHc
Q 013760          183 NTELFSLLKEA  193 (437)
Q Consensus       183 ~~~i~~~L~~~  193 (437)
                      +.+++++|++.
T Consensus       329 n~e~v~lLL~~  339 (346)
T d2ajaa1         329 NQGACALLLSI  339 (346)
T ss_dssp             CTTHHHHHTTS
T ss_pred             cHHHHHHHhCC
Confidence            99999999863

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=3.8e-25  Score=197.38  Aligned_cols=161  Identities=27%  Similarity=0.341  Sum_probs=139.8

Q ss_pred             HHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHH---------
Q 013760           48 IDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDI---------  118 (437)
Q Consensus        48 ~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~i---------  118 (437)
                      .|+|++|+++|+++....|.+|.||||+||..|+.+++++|++.+++++.. +..+.++++.++..++.+.         
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQ-DNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccc-cccccccccccccccccccccccccccc
Confidence            489999999999985557999999999999999999999999999988754 8889999999887665543         


Q ss_pred             -------------------------HHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCC
Q 013760          119 -------------------------VLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGES  173 (437)
Q Consensus       119 -------------------------v~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T  173 (437)
                                               .+.|...+.++ +.+|..|+||||.++.++..++++.+++ .+.+++..|.+|.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~-~~~~~~~~d~~g~T  158 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLM-HHANRDAQDDKDET  158 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecc-cccccccccccccc
Confidence                                     33444444443 7789999999999999999999999999 79999999999999


Q ss_pred             HHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHHHH
Q 013760          174 PLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATKQL  211 (437)
Q Consensus       174 ~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~~~  211 (437)
                      |||+|+..|+.+++++|+++|++++..+..+.+|....
T Consensus       159 pL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A  196 (209)
T d1ot8a_         159 PLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVA  196 (209)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            99999999999999999999999988888787776544

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.4e-24  Score=191.12  Aligned_cols=178  Identities=28%  Similarity=0.263  Sum_probs=151.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHh----cCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHH
Q 013760           33 LSCSTALHTAAAQGHIDVVNFLLE----IDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALH  108 (437)
Q Consensus        33 ~~g~TpLh~Aa~~g~~~iv~~Ll~----~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh  108 (437)
                      ++|+||||+||..|+.++++.|++    .|.++ +.+|.+|+||||+|+..|+.++++.|++.+++.... +..|.++++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~-~~~~~~~~~   78 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL-DRHGQTAAH   78 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhccccccccccccccccccccc-ccccccccc
Confidence            479999999999999999999885    56666 678999999999999999999999999999887754 888999999


Q ss_pred             HHHhCCCHHHHHHhhcCC---CCccccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHH
Q 013760          109 MAVKGQNEDIVLELIRPD---PSVLKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTE  185 (437)
Q Consensus       109 ~A~~~g~~~iv~~Ll~~~---~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~  185 (437)
                      .|...++.++++.+....   ....+..+..+.++||.+.........+.|...........+..|.+|++.|+..+..+
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  158 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS  158 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhh
Confidence            999999999988776543   22335667788999999999999999999987444445566778999999999999999


Q ss_pred             HHHHHHHcCCCcccCCCCCCChHHHHH
Q 013760          186 LFSLLKEAGAAHSKDHGKPPSATKQLK  212 (437)
Q Consensus       186 i~~~L~~~ga~~~~~~~~~~~~~~~~~  212 (437)
                      +.+.+++.|......+..+.++.....
T Consensus       159 ~~~~~~~~~~~~~~~d~~g~t~L~~A~  185 (228)
T d1k1aa_         159 MVQLLLQHGANVNAQMYSGSSALHSAS  185 (228)
T ss_dssp             HHHHHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred             hhhhhhhhccccccccccCcchHHHHH
Confidence            999999999988877777777655443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.3e-25  Score=212.86  Aligned_cols=143  Identities=25%  Similarity=0.312  Sum_probs=107.2

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCH-------HHHHHHHhCCCCCCcccCCCC
Q 013760           31 TDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHL-------EVVKALVSKDPSTGFRTDKKG  103 (437)
Q Consensus        31 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~-------~iv~~Ll~~~~~~~~~~d~~g  103 (437)
                      .|.+|+||||+||..|+.++|++|+++|+++ +.+|..|+||||.|+..|+.       ++++++...    ...+|..|
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~----~~~~d~~g  177 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC----LILEDSMN  177 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG----GGEECTTC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh----hhhccccc
Confidence            4889999999999999999999999999998 67899999999999987752       444444332    23458899


Q ss_pred             CcHHHHHHhCCC----HHH--------HHHhhcCCCCc------------------------------------cccCCC
Q 013760          104 QTALHMAVKGQN----EDI--------VLELIRPDPSV------------------------------------LKLEDN  135 (437)
Q Consensus       104 ~t~Lh~A~~~g~----~~i--------v~~Ll~~~~~~------------------------------------~~~~d~  135 (437)
                      +||||.++..+.    ..+        +..+++.+...                                    +|.+|.
T Consensus       178 ~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~  257 (301)
T d1sw6a_         178 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS  257 (301)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCT
T ss_pred             CCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCC
Confidence            999998875433    222        23333322211                                    466778


Q ss_pred             CCChHHHHHHHcCcHHHHHHhhcccCCCccccccCCCCHHHHHH
Q 013760          136 KGNTALHIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAE  179 (437)
Q Consensus       136 ~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~  179 (437)
                      +|+||||+|++.|+.+++++|++ .|+|++.+|++|.||||+|+
T Consensus       258 ~G~TpLh~A~~~g~~~iv~~Ll~-~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         258 NGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHcC
Confidence            88888888888888888888887 68888888888888887764

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.6e-24  Score=178.03  Aligned_cols=120  Identities=23%  Similarity=0.322  Sum_probs=69.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCC-CcHHHHHHhC
Q 013760           35 CSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKG-QTALHMAVKG  113 (437)
Q Consensus        35 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g-~t~Lh~A~~~  113 (437)
                      +.++||+|+..|+.++|++|+++|+++ +.+|.+|.||||+|+ .|+.+++++|++++++++.. |..| .||||+|++.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA-DPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCC-CTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-cccccccccccccccccccc-ccccccccccccccc
Confidence            345666666666666666666666554 455556666666443 45666666666666555443 3333 3466666666


Q ss_pred             CCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcHHHHHHhhc
Q 013760          114 QNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRTQIVRCLLS  158 (437)
Q Consensus       114 g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~  158 (437)
                      |+.+++++|++.+.++ +.+|.+|+||||+|+++|+.+++++|++
T Consensus        80 g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            6666666666655443 5556666666666666666666665553

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-23  Score=171.86  Aligned_cols=120  Identities=20%  Similarity=0.293  Sum_probs=110.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCC-hHHHHHHHc
Q 013760           69 GKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGN-TALHIAIKK  147 (437)
Q Consensus        69 G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~-TpLh~A~~~  147 (437)
                      +.++||+|+..|+.+++++|+++|.+++. +|.+|.||||+|+ .|+.+++++|++.+.++ +.+|..|. ||||.|++.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~-~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNA-PNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTC-CCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcccc-ccccccccccccc-ccccccccccccccccc-cccccccccccccccccc
Confidence            56899999999999999999999999875 4999999999775 69999999999999887 77888765 699999999


Q ss_pred             CcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHH
Q 013760          148 GRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKE  192 (437)
Q Consensus       148 g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~  192 (437)
                      |+.+++++|++ .|++++.+|..|+||||+|++.|+.+++++|+.
T Consensus        80 g~~~~v~~Ll~-~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHH-HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccc-cccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999 799999999999999999999999999999875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=2.7e-24  Score=174.76  Aligned_cols=105  Identities=25%  Similarity=0.294  Sum_probs=51.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHHcCcH
Q 013760           71 TVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIKKGRT  150 (437)
Q Consensus        71 tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~g~~  150 (437)
                      |||++|++.|+.+++++|++.+.+++.. |.+|+||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+.+|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~-~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCC-SSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccc-ccccccccccccccccccccccccccccee-eecccccccchhhhhhcCch
Confidence            4444444444444444444444444322 444444555544444444444444444443 44455555555555555555


Q ss_pred             HHHHHhhcccCCCccccccCCCCHHHHH
Q 013760          151 QIVRCLLSIEGIDVNSLNKAGESPLDVA  178 (437)
Q Consensus       151 ~iv~~Ll~~~g~~~n~~n~~G~T~L~~A  178 (437)
                      +++++|++ .|+|++.+|.+|.||||+|
T Consensus        82 ~~v~~Ll~-~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLS-KGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHT-TCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhhc-ccccceeeCCCCCCHHHHH
Confidence            55555554 4455555555555555544

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.7e-22  Score=185.35  Aligned_cols=165  Identities=21%  Similarity=0.272  Sum_probs=141.9

Q ss_pred             CchhhHHHHcCCcHHHHHHHHhhCCcc---------cccCCCCCCcHHHHHHHcCCHHHHHHHHhc-CCchhHhhhcCCC
Q 013760            1 MDMIHFMWQQSRVILVLKELLGEFPNL---------VMTTDLSCSTALHTAAAQGHIDVVNFLLEI-DSNLAKIARNNGK   70 (437)
Q Consensus         1 ~t~Lh~A~~~g~~~~~vk~Ll~~~~~~---------~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~G~   70 (437)
                      .|+|+.|+..|+ .+.++.+++...+.         ....+..|.||||+|++.|+.+++++|+++ |.++ +..+..|.
T Consensus       106 ~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~~~~  183 (285)
T d1wdya_         106 FTAFMEAAVYGK-VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGR  183 (285)
T ss_dssp             CBHHHHHHHTTC-HHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSC
T ss_pred             CchhHHHHHhcc-hhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc-ccccCCCC
Confidence            478999999999 99999999865432         223567899999999999999999999976 5555 67788899


Q ss_pred             cHHHHHHHcC----CHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccccCCCCCChHHHHHHH
Q 013760           71 TVLHSAARMG----HLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLKLEDNKGNTALHIAIK  146 (437)
Q Consensus        71 tpLh~Aa~~g----~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~  146 (437)
                      ++++.+...+    ..+++++|+++++++.. +|..|.||||.|++.|+.+++++|++.++..++.+|.+|+||||+|++
T Consensus       184 ~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~-~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~  262 (285)
T d1wdya_         184 NALIHALLSSDDSDVEAITHLLLDHGADVNV-RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE  262 (285)
T ss_dssp             CHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC-CCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHH
T ss_pred             cccccccccccchHHHHHHHHHHHCCCCCCc-cCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            8888776544    35799999999999875 489999999999999999999999987555559999999999999999


Q ss_pred             cCcHHHHHHhhcccCCCcccccc
Q 013760          147 KGRTQIVRCLLSIEGIDVNSLNK  169 (437)
Q Consensus       147 ~g~~~iv~~Ll~~~g~~~n~~n~  169 (437)
                      .|+.+++++|++ .|+|+|++|.
T Consensus       263 ~~~~eiv~~Ll~-~GAd~n~~d~  284 (285)
T d1wdya_         263 LKLKKIAELLCK-RGASTDCGDL  284 (285)
T ss_dssp             TTCHHHHHHHHH-HSSCSCCSSC
T ss_pred             cCCHHHHHHHHH-CCCCCCcccC
Confidence            999999999999 8999999874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.9e-23  Score=169.62  Aligned_cols=107  Identities=24%  Similarity=0.255  Sum_probs=101.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCC
Q 013760           36 STALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQN  115 (437)
Q Consensus        36 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~  115 (437)
                      .|||++|++.|+.++|++|+++|+++ +.+|.+|+||||+|+..|+.+++++|++.+++.+.. |.+|+||||+|+.+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~-d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCC-SSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccccceeeec-ccccccchhhhhhcCc
Confidence            58999999999999999999999987 678999999999999999999999999999998754 9999999999999999


Q ss_pred             HHHHHHhhcCCCCccccCCCCCChHHHHHH
Q 013760          116 EDIVLELIRPDPSVLKLEDNKGNTALHIAI  145 (437)
Q Consensus       116 ~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~  145 (437)
                      .+++++|++.|.++ +.+|.+|+||||+|.
T Consensus        81 ~~~v~~Ll~~Gad~-~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          81 VSCVKLLLSKGADK-TVKGPDGLTALEATD  109 (118)
T ss_dssp             CHHHHHHHTTCCCS-SSSSSSTCCCCCTCS
T ss_pred             hhhhhhhhcccccc-eeeCCCCCCHHHHHh
Confidence            99999999999886 899999999999983

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7e-23  Score=169.24  Aligned_cols=119  Identities=24%  Similarity=0.243  Sum_probs=61.7

Q ss_pred             chhhHHHHcCCcHHHHHHHHhhCCcccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCC
Q 013760            2 DMIHFMWQQSRVILVLKELLGEFPNLVMTTDLSCSTALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGH   81 (437)
Q Consensus         2 t~Lh~A~~~g~~~~~vk~Ll~~~~~~~~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~   81 (437)
                      ++||.||..|+ +|+|+.|++++.+ ++.+|.+|+||||+|+..|+.+++++|++.|++. +.+|.+|+||||+|+..|+
T Consensus         3 ~lL~~A~~~G~-~~~v~~Ll~~g~d-~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLEGE-FDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHTC-HHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCC-HHHHHHHHHcCCC-cccccccccccccccccccccccccccccccccc-ccccccCcccccccchhhH
Confidence            34555555555 5555555555444 2345555555555555555555555555555544 4455555555555555555


Q ss_pred             HHHHHHHHhCCCCCCcccCCCCCcHHHHH--HhCCCHHHHHHhh
Q 013760           82 LEVVKALVSKDPSTGFRTDKKGQTALHMA--VKGQNEDIVLELI  123 (437)
Q Consensus        82 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~g~~~iv~~Ll  123 (437)
                      .+++++|+++|+++....+.+|+||++++  ++.|+.+++++|+
T Consensus        80 ~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~  123 (130)
T d1ycsb1          80 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY  123 (130)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHH
Confidence            55555555555554433233444444433  3444455555554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-22  Score=167.44  Aligned_cols=118  Identities=26%  Similarity=0.321  Sum_probs=56.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHH
Q 013760           38 ALHTAAAQGHIDVVNFLLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNED  117 (437)
Q Consensus        38 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~  117 (437)
                      +|+.||..|+.++|+.|+++|+++ +.+|.+|+||||+|+..|+.+++++|++.+++.+. .|.+|+||||+|+.+|+.+
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~-~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCc-ccccccccccccccccccccccccccccccccccc-ccccCcccccccchhhHHH
Confidence            445555555555555555555543 34455555555555555555555555555444432 2444555555555555555


Q ss_pred             HHHHhhcCCCCccccCC-CCCChHHHHH--HHcCcHHHHHHhhc
Q 013760          118 IVLELIRPDPSVLKLED-NKGNTALHIA--IKKGRTQIVRCLLS  158 (437)
Q Consensus       118 iv~~Ll~~~~~~~~~~d-~~G~TpLh~A--~~~g~~~iv~~Ll~  158 (437)
                      ++++|+++|+++ +..+ .+|+||++++  +..|+.+++++|++
T Consensus        82 ~v~~Ll~~ga~v-~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          82 VCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHcCCCc-ccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            555555544443 2222 2344443333  23344444444443

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.85  E-value=1.5e-23  Score=202.41  Aligned_cols=137  Identities=17%  Similarity=0.229  Sum_probs=113.5

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHH---HHhcCCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcc-cCCCCC
Q 013760           29 MTTDLSCSTALHTAAAQGHIDVVNF---LLEIDSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFR-TDKKGQ  104 (437)
Q Consensus        29 ~~~d~~g~TpLh~Aa~~g~~~iv~~---Ll~~~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-~d~~g~  104 (437)
                      ..+|..|.||||+||+.||.+++++   |++.|+++ +..|.+|+||||+||.+||.++|++|++.+++.... .+.+|.
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~  162 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY  162 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHH
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCC
Confidence            3567899999999999999887765   78888887 678889999999999999999999999999987644 234699


Q ss_pred             cHHHHHHhCCCHHHHHHhhcCCCCc--cccCCCCCChHHHHHHHcCcHHHHHHhhcccCCCcccc
Q 013760          105 TALHMAVKGQNEDIVLELIRPDPSV--LKLEDNKGNTALHIAIKKGRTQIVRCLLSIEGIDVNSL  167 (437)
Q Consensus       105 t~Lh~A~~~g~~~iv~~Ll~~~~~~--~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~n~~  167 (437)
                      ||||+|+++|+.+++++|++.++..  .+..+.+|.||+|.|+.+|+.+++++|++ .|++++..
T Consensus       163 t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~-~ga~~~~~  226 (346)
T d2ajaa1         163 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD-CPVMLAYA  226 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT-SHHHHHHH
T ss_pred             ChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHh-CCCCcchH
Confidence            9999999999999999999988654  24455677888999999999999999998 67665543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=5.7e-22  Score=187.52  Aligned_cols=147  Identities=26%  Similarity=0.332  Sum_probs=114.6

Q ss_pred             CCchhHhhhcCCCcHHHHHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCH-------HHHHHhhcCCCCcc
Q 013760           58 DSNLAKIARNNGKTVLHSAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNE-------DIVLELIRPDPSVL  130 (437)
Q Consensus        58 ~~~~~~~~~~~G~tpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~-------~iv~~Ll~~~~~~~  130 (437)
                      +.++....|.+|+||||+||..|+.++|++|+++|+++.. +|..|+||||.|+..++.       ++++.+.    ..+
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~-~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~----~~~  170 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEALLDYLY----PCL  170 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB-CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG----GGG
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc-CCcccccHHHHhhhcccchhhhhHHHHHHHHh----hhh
Confidence            3444222388999999999999999999999999999875 499999999999987652       3444443    234


Q ss_pred             ccCCCCCChHHHHHHHcCc----HHH--------HHHhhcccCC------------------------------------
Q 013760          131 KLEDNKGNTALHIAIKKGR----TQI--------VRCLLSIEGI------------------------------------  162 (437)
Q Consensus       131 ~~~d~~G~TpLh~A~~~g~----~~i--------v~~Ll~~~g~------------------------------------  162 (437)
                      +.+|..|+||||.++..+.    ...        +.+++.....                                    
T Consensus       171 ~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (301)
T d1sw6a_         171 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN  250 (301)
T ss_dssp             GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH
T ss_pred             hhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc
Confidence            6789999999998886443    222        2333332111                                    


Q ss_pred             CccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCcccCCCCCCChHH
Q 013760          163 DVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAHSKDHGKPPSATK  209 (437)
Q Consensus       163 ~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~~~~~~~~~~~~~  209 (437)
                      .+|.+|.+|+||||+|++.|+.+++++|+++|++++..++.+.+|.+
T Consensus       251 ~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~  297 (301)
T d1sw6a_         251 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVD  297 (301)
T ss_dssp             TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGG
T ss_pred             CccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            26889999999999999999999999999999999998888887754

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=3.7e-21  Score=163.31  Aligned_cols=126  Identities=21%  Similarity=0.245  Sum_probs=99.6

Q ss_pred             hhhHHHHcCCcHHHHHHHHhhCCcccc-----cCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCchhHhhhcCCCcHHH
Q 013760            3 MIHFMWQQSRVILVLKELLGEFPNLVM-----TTDLSCSTALHTAAAQ---GHIDVVNFLLEIDSNLAKIARNNGKTVLH   74 (437)
Q Consensus         3 ~Lh~A~~~g~~~~~vk~Ll~~~~~~~~-----~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~~~~~~G~tpLh   74 (437)
                      .|+.|++.++ ++.++.++..+.++..     ..+..|+||||+|+..   |+.++|++|+++|+++ +.+|.+|+||||
T Consensus         9 ~L~~Av~~~d-l~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh   86 (154)
T d1dcqa1           9 SLCEAVKTRD-IFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHH
T ss_pred             HHHHHHHhCC-HHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhccccc
Confidence            4678888999 8888888877654322     2366788899988874   6788888888888886 678888888888


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCcccCCCCCcHHHHHHhCCCHHHHHHhhcCCCCccc
Q 013760           75 SAARMGHLEVVKALVSKDPSTGFRTDKKGQTALHMAVKGQNEDIVLELIRPDPSVLK  131 (437)
Q Consensus        75 ~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~  131 (437)
                      +|+..|+.+++++|+++++++.. +|.+|+||||+|++.|+.+++++|++.+....+
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~~~-~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~  142 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASIEI-ANESGETPLDIAKRLKHEHCEELLTQALSGRFN  142 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred             cccccccccccccccccCccccc-cCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence            88888888888888888888764 488888888888888888888888876544433

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.8e-20  Score=158.94  Aligned_cols=123  Identities=24%  Similarity=0.317  Sum_probs=91.9

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCc-----ccCCCCCcHHHHHHhC---CCHHHHHHhhcCCCCccccCCCCCChHHHHH
Q 013760           73 LHSAARMGHLEVVKALVSKDPSTGF-----RTDKKGQTALHMAVKG---QNEDIVLELIRPDPSVLKLEDNKGNTALHIA  144 (437)
Q Consensus        73 Lh~Aa~~g~~~iv~~Ll~~~~~~~~-----~~d~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A  144 (437)
                      |..|++.+++..+..++..+.+...     ..+..|+||||+|++.   +..+++++|++.|.++ +.+|.+|+||||+|
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~A   88 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhccccccc
Confidence            4455666666666666665544332     1256678888888863   5678888888877765 77888888888888


Q ss_pred             HHcCcHHHHHHhhcccCCCccccccCCCCHHHHHHHcCcHHHHHHHHHcCCCc
Q 013760          145 IKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDVAEKLGNTELFSLLKEAGAAH  197 (437)
Q Consensus       145 ~~~g~~~iv~~Ll~~~g~~~n~~n~~G~T~L~~A~~~~~~~i~~~L~~~ga~~  197 (437)
                      +..|+.+++++|++ .|++++.+|.+|.||||+|++.|+.+++++|+++++..
T Consensus        89 ~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          89 CLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccccccccccccc-cCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            88888888888887 78888888888888888888888888888888876654