Citrus Sinensis ID: 013766

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
MAGSDENNPVVNGQSNLHGCIRAGGGKFVGAVGQNRRALSAINRNIIAAPPYPCAVNKRTLSESNAICDKNPPIPVHRPITRKFAAEIANKQQQLKPEIEETKKSAQVVPISSELDDRTIKDVHNYKPTTESTVPMFVQHTEAMLEEIDRMEEDELEDVAEDPVMDIDYEEKKNPQAVVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQKAGTGKLTGVHRKYSTSKFGYAAKTRLPNFLLGAGF
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHcHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccEEEEccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccccccccc
ccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccHccccHHHHHcHccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcHHHHHHHccccccccccccHcccccHHHcHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHHHHHcccccccHEEEEEccccHHcHHccccccHHHHHHHc
magsdennpvvngqsnlhgciragggkfvgavgqnrRALSAINRniiaappypcavnkrtlsesnaicdknppipvhrpiTRKFAAEIANKQQQLKPEIEetkksaqvvpisselddrtikdvhnykpttestvpMFVQHTEAMLEEIDRMEedeledvaedpvmdidyeekknpqAVVEYIDDIYNFYKkaessgyvppnymaqqfDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRfltvqpvvRKKLQLVGVTAMLLACKYEEVSVPVVEDLILIsdkaysrkeVLDMEKLMVNTLQfnmsvptpYVFMRRFLKASQSDKKLELLSFFLIELCLVEyemlkfppsLLAAAAVYTAQCTlsgfkqwskTSEWYTSYSEEQLLECSRLMVIFHqkagtgkltgvhrkystskfgyaaktrlpnfllgagf
MAGSDENNPVVNGQSNLHGCIRAGGGKFVGAVGQNRRALSAINRNIIAAPPYPCAVNKRTLSEsnaicdknppipVHRPITRKFAAEIANKQQqlkpeieetkksaqvvpisselddrtikdvhnykpttestvpmfVQHTEAMLEEIDRMEEDELEDVAEDPVMDIDYEEKKNPQAVVEYIDDIYNFYKKaessgyvppNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQkagtgkltgvhRKYSTskfgyaaktrlpnfllgagf
MAGSDENNPVVNGQSNLHGCIRAGGGKFVGAVGQNRRALSAINRNIIAAPPYPCAVNKRTLSESNAICDKNPPIPVHRPITRKFAAEIANKQQQLKPEIEETKKSAQVVPISSELDDRTIKDVHNYKPTTESTVPMFVQHTEAmleeidrmeedeledVAEDPVMDIDYEEKKNPQAVVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQKAGTGKLTGVHRKYSTSKFGYAAKTRLPNFLLGAGF
***************NLHGCIRAGGGKFVGAVGQNRRALSAINRNIIAAPPYPCAVNKRTLSESNAICD******V***I***********************************************************************************************QAVVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQKAGTGKLTGVHRKYSTSKFGYAAKTRLPNFLL****
*****************************************************************************************************************************************************************DPVMDIDYEEKKNPQAVVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQKAGTGKLTGVHRKYSTSKFGYAAKTRLPNFLLGAGF
*********VVNGQSNLHGCIRAGGGKFVGAVGQNRRALSAINRNIIAAPPYPCAVNKRTLSESNAICDKNPPIPVHRPITRKFAAEIANKQQQLKPEIEETKKSAQVVPISSELDDRTIKDVHNYKPTTESTVPMFVQHTEAMLEEIDRMEEDELEDVAEDPVMDIDYEEKKNPQAVVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQKAGTGKLTGVHRKYSTSKFGYAAKTRLPNFLLGAGF
**************************************LS****NIIAAPPY**********************************************************************************************************VAEDPVMDIDYEEKKNPQAVVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQKAGTGKLTGVHRKYSTSKFGYAAKTRLPNFLLGAGF
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MAGSDENNPVVNGQSNLHGCIRAGGGKFVGAVGQNRRALSAINRNIIAAPPYPCAVNKRTLSESNAICDKNPPIPVHRPITRKFAAEIANKQQQLKPEIEETKKSAQVVPISSELDDRTIKDVHNYKPTTESTVPMFVQHTEAMLEEIDRMEEDELEDVAEDPVMDIDYEEKKNPQAVVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQKAGTGKLTGVHRKYSTSKFGYAAKTRLPNFLLGAGF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query437 2.2.26 [Sep-21-2011]
Q9SFW6431 Cyclin-B2-4 OS=Arabidopsi yes no 0.963 0.976 0.674 1e-161
Q9LDM4429 Cyclin-B2-3 OS=Arabidopsi no no 0.972 0.990 0.652 1e-157
P46277428 G2/mitotic-specific cycli N/A no 0.967 0.988 0.633 1e-153
P46278434 G2/mitotic-specific cycli N/A no 0.917 0.923 0.614 1e-143
Q0D9C7419 Cyclin-B2-2 OS=Oryza sati yes no 0.867 0.904 0.589 1e-129
A2YH60419 Cyclin-B2-2 OS=Oryza sati N/A no 0.867 0.904 0.589 1e-129
Q01J96423 Cyclin-B2-1 OS=Oryza sati N/A no 0.897 0.926 0.570 1e-126
Q7XSJ6420 Cyclin-B2-1 OS=Oryza sati no no 0.897 0.933 0.570 1e-125
P30278328 G2/mitotic-specific cycli N/A no 0.684 0.911 0.685 1e-120
Q39068429 Cyclin-B2-1 OS=Arabidopsi no no 0.878 0.895 0.545 1e-110
>sp|Q9SFW6|CCB24_ARATH Cyclin-B2-4 OS=Arabidopsis thaliana GN=CYCB2-4 PE=2 SV=2 Back     alignment and function desciption
 Score =  569 bits (1466), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 298/442 (67%), Positives = 337/442 (76%), Gaps = 21/442 (4%)

Query: 1   MAGSDENNPVVNGQSNLH-GCIRAGGGKFVGAVGQNRRALSAINRNIIAAPPYPCAVNKR 59
           M GSDEN   V G  N   G +R  GGK +   GQ RRALS IN+NII AP YPCAV KR
Sbjct: 1   MGGSDENRHGVIGPMNRQQGGLR--GGKVIPTNGQTRRALSNINKNIIGAPVYPCAV-KR 57

Query: 60  TLSESNAICDKN-PPIPVHRPITRKFAAEIANKQQQLKPEIEETKKSAQVVPISSELDDR 118
             +E N IC+K  PP+PVHRP+TRKFAA++A    Q+  E  ETKK      IS+E  DR
Sbjct: 58  PFTEKNGICNKKIPPVPVHRPVTRKFAAQLAENNLQIHKE--ETKKPDL---ISNEALDR 112

Query: 119 TIKDVHNYKPTTESTVPMFVQHTEAMLEEIDRMEEDELEDV------AEDPVMDIDYEEK 172
            I DV       +   PMFVQHTEAMLEEID+ME  E++D        E+ VMDID  +K
Sbjct: 113 IITDVEE----GDFNEPMFVQHTEAMLEEIDKMEGIEMQDSNDIDAEVEESVMDIDSCDK 168

Query: 173 KNPQAVVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELME 232
            NP +VVEYI+DIY FYKK E    VPPNYM  Q DINERMRGIL DWLIEVHYKFELME
Sbjct: 169 NNPLSVVEYINDIYCFYKKNECRSCVPPNYMENQHDINERMRGILFDWLIEVHYKFELME 228

Query: 233 ETLYLTVNLIDRFLTV-QPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSR 291
           ETLYLT+NLIDRFL V Q + RKKLQLVGVTAMLLACKYEEVSVPVV+DLILISDKAY+R
Sbjct: 229 ETLYLTINLIDRFLAVHQHIARKKLQLVGVTAMLLACKYEEVSVPVVDDLILISDKAYTR 288

Query: 292 KEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKF 351
            E+LDMEKLM NTLQFN  +PTPYVFMRRFLKA+QSDKKLELLSFF+IELCLVEYEML++
Sbjct: 289 TEILDMEKLMANTLQFNFCLPTPYVFMRRFLKAAQSDKKLELLSFFMIELCLVEYEMLQY 348

Query: 352 PPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQKAGTGKLTGV 411
            PS LAA+A+YTAQ TL G++ WSKTSE+++ Y+EE LLECSR MV  H KAGTGKLTGV
Sbjct: 349 TPSQLAASAIYTAQSTLKGYEDWSKTSEFHSGYTEEALLECSRKMVGLHHKAGTGKLTGV 408

Query: 412 HRKYSTSKFGYAAKTRLPNFLL 433
           HRKY+TSKFGYAA+     FLL
Sbjct: 409 HRKYNTSKFGYAARIEPAGFLL 430

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LDM4|CCB23_ARATH Cyclin-B2-3 OS=Arabidopsis thaliana GN=CYCB2-3 PE=2 SV=2 Back     alignment and function description
>sp|P46277|CCNB1_MEDSV G2/mitotic-specific cyclin-1 OS=Medicago sativa subsp. varia PE=2 SV=1 Back     alignment and function description
>sp|P46278|CCNB2_MEDSV G2/mitotic-specific cyclin-2 OS=Medicago sativa subsp. varia PE=2 SV=1 Back     alignment and function description
>sp|Q0D9C7|CCB22_ORYSJ Cyclin-B2-2 OS=Oryza sativa subsp. japonica GN=CYCB2-2 PE=1 SV=1 Back     alignment and function description
>sp|A2YH60|CCB22_ORYSI Cyclin-B2-2 OS=Oryza sativa subsp. indica GN=CYCB2-2 PE=1 SV=2 Back     alignment and function description
>sp|Q01J96|CCB21_ORYSI Cyclin-B2-1 OS=Oryza sativa subsp. indica GN=CYCB2-1 PE=1 SV=1 Back     alignment and function description
>sp|Q7XSJ6|CCB21_ORYSJ Cyclin-B2-1 OS=Oryza sativa subsp. japonica GN=CYCB2-1 PE=1 SV=2 Back     alignment and function description
>sp|P30278|CCNB2_MEDSA G2/mitotic-specific cyclin-2 (Fragment) OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|Q39068|CCB21_ARATH Cyclin-B2-1 OS=Arabidopsis thaliana GN=CYCB2-1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
255539220438 cyclin B, putative [Ricinus communis] gi 0.983 0.981 0.789 0.0
224086042436 predicted protein [Populus trichocarpa] 0.997 1.0 0.773 0.0
302142651441 unnamed protein product [Vitis vinifera] 0.986 0.977 0.739 0.0
359492732437 PREDICTED: cyclin-B2-4 [Vitis vinifera] 0.979 0.979 0.739 0.0
347361138439 cyclin [Camellia sinensis] 0.993 0.988 0.746 0.0
449455599440 PREDICTED: cyclin-B2-4-like [Cucumis sat 0.983 0.977 0.722 1e-172
297842387432 predicted protein [Arabidopsis lyrata su 0.965 0.976 0.683 1e-163
449512698412 PREDICTED: cyclin-B2-4-like [Cucumis sat 0.919 0.975 0.703 1e-163
22330658431 cyclin-B2-4 [Arabidopsis thaliana] gi|14 0.963 0.976 0.674 1e-159
297850480427 CYCB2_3 [Arabidopsis lyrata subsp. lyrat 0.963 0.985 0.662 1e-158
>gi|255539220|ref|XP_002510675.1| cyclin B, putative [Ricinus communis] gi|223551376|gb|EEF52862.1| cyclin B, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/437 (78%), Positives = 374/437 (85%), Gaps = 7/437 (1%)

Query: 1   MAGSDENNPVVNGQSNLHGCIRAGGGKFVGA---VGQNRRALSAINRNIIAAPPYPCAVN 57
           MAGSDENNP V G  N+ G +RAG GKF  A    G NRRALS+INRNII APPYPCAVN
Sbjct: 1   MAGSDENNPGVIGPVNVQGGLRAGVGKFTAAAATTGNNRRALSSINRNIIGAPPYPCAVN 60

Query: 58  KRTLSESNAICDKNPPIPVHRPITRKFAAEIANKQQQLKPEIEETKKSAQVVPISSELDD 117
           KR  SE  AIC KNP IPVHRPITRKFAA++ANKQQ   P+ EE KK    +PISS+ +D
Sbjct: 61  KRGPSERQAICGKNPSIPVHRPITRKFAAQLANKQQ---PKPEEIKKPDHSIPISSDPED 117

Query: 118 RTIKDVHNYKPTT-ESTVPMFVQHTEAMLEEIDRMEEDELEDVAEDPVMDIDYEEKKNPQ 176
            TI D  +Y  T  + +VPMFVQHTEAMLEEIDRMEE E+EDV E+P MDID  +KKNP 
Sbjct: 118 CTIIDAEDYNKTNGDFSVPMFVQHTEAMLEEIDRMEEVEMEDVVEEPFMDIDSYDKKNPL 177

Query: 177 AVVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLY 236
           AVVEYIDD+YNFY+KAE S   P NYM+QQ DINERMRGILIDWLIEVHYKFELM+ETLY
Sbjct: 178 AVVEYIDDLYNFYRKAELSSCAPSNYMSQQSDINERMRGILIDWLIEVHYKFELMDETLY 237

Query: 237 LTVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLD 296
           LTVNLIDRFL V PVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLD
Sbjct: 238 LTVNLIDRFLAVHPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLD 297

Query: 297 MEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLL 356
           MEKLMVNTLQFN+SVPTPYVFMRRFLKA+QSDKKLELLSFF+IELCLVEYEMLKFPPS+L
Sbjct: 298 MEKLMVNTLQFNVSVPTPYVFMRRFLKAAQSDKKLELLSFFIIELCLVEYEMLKFPPSVL 357

Query: 357 AAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQKAGTGKLTGVHRKYS 416
           AAAA+YTAQ TLS F+ WSKT+EWYTSYSEEQLLECSRLMV FHQ AG+GKLTGVHRKYS
Sbjct: 358 AAAAIYTAQSTLSRFRHWSKTNEWYTSYSEEQLLECSRLMVKFHQNAGSGKLTGVHRKYS 417

Query: 417 TSKFGYAAKTRLPNFLL 433
            SKFG+AA+T   NFLL
Sbjct: 418 VSKFGFAARTEPANFLL 434

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224086042|ref|XP_002307791.1| predicted protein [Populus trichocarpa] gi|222857240|gb|EEE94787.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302142651|emb|CBI19854.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359492732|ref|XP_002280079.2| PREDICTED: cyclin-B2-4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|347361138|gb|AEO86797.1| cyclin [Camellia sinensis] Back     alignment and taxonomy information
>gi|449455599|ref|XP_004145540.1| PREDICTED: cyclin-B2-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297842387|ref|XP_002889075.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297334916|gb|EFH65334.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449512698|ref|XP_004164118.1| PREDICTED: cyclin-B2-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|22330658|ref|NP_177758.2| cyclin-B2-4 [Arabidopsis thaliana] gi|147636286|sp|Q9SFW6.2|CCB24_ARATH RecName: Full=Cyclin-B2-4; AltName: Full=G2/mitotic-specific cyclin-B2-4; Short=CycB2;4 gi|332197702|gb|AEE35823.1| cyclin-B2-4 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297850480|ref|XP_002893121.1| CYCB2_3 [Arabidopsis lyrata subsp. lyrata] gi|297338963|gb|EFH69380.1| CYCB2_3 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
TAIR|locus:2014574431 CYCB2;4 "CYCLIN B2;4" [Arabido 0.963 0.976 0.651 2.4e-138
TAIR|locus:2030482429 CYCB2;3 "Cyclin B2;3" [Arabido 0.972 0.990 0.633 6.7e-136
TAIR|locus:2127948429 CYCB2;2 "Cyclin B2;2" [Arabido 0.874 0.890 0.555 9.2e-107
TAIR|locus:2057243429 CYCB2;1 "Cyclin B2;1" [Arabido 0.878 0.895 0.530 1.3e-102
TAIR|locus:2160722445 CYC1BAT [Arabidopsis thaliana 0.917 0.901 0.379 4.8e-71
TAIR|locus:2030457265 AT1G20590 [Arabidopsis thalian 0.389 0.641 0.8 1.6e-70
TAIR|locus:2080717414 CYCB1;3 "CYCLIN B1;3" [Arabido 0.780 0.823 0.423 1.7e-68
TAIR|locus:2126377428 CYCB1;1 "CYCLIN B1;1" [Arabido 0.881 0.899 0.376 7.6e-64
TAIR|locus:2043818387 CYCB1;4 "Cyclin B1;4" [Arabido 0.590 0.666 0.467 5.5e-61
DICTYBASE|DDB_G0275493436 cycB "G2/M-specific cyclinB" [ 0.594 0.596 0.431 5.1e-58
TAIR|locus:2014574 CYCB2;4 "CYCLIN B2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1354 (481.7 bits), Expect = 2.4e-138, P = 2.4e-138
 Identities = 288/442 (65%), Positives = 324/442 (73%)

Query:     1 MAGSDENNPVVNGQSNLH-GCIRAGGGKFVGAVGQNRRALSAINRNIIAAPPYPCAVNKR 59
             M GSDEN   V G  N   G +R  GGK +   GQ RRALS IN+NII AP YPCAV KR
Sbjct:     1 MGGSDENRHGVIGPMNRQQGGLR--GGKVIPTNGQTRRALSNINKNIIGAPVYPCAV-KR 57

Query:    60 TLSESNAICDKN-PPIPVHRPITRKFAAEIANKQQQLKPEIEETKKSAQVVPISSELDDR 118
               +E N IC+K  PP+PVHRP+TRKFAA++A    Q+  E  ETKK      IS+E  DR
Sbjct:    58 PFTEKNGICNKKIPPVPVHRPVTRKFAAQLAENNLQIHKE--ETKKPDL---ISNEALDR 112

Query:   119 TIKDVHNYKPTTESTVPMFVQHTEAXXXXXXXXX------XXXXXXVAEDPVMDIDYEEK 172
              I DV       +   PMFVQHTEA                       E+ VMDID  +K
Sbjct:   113 IITDVEE----GDFNEPMFVQHTEAMLEEIDKMEGIEMQDSNDIDAEVEESVMDIDSCDK 168

Query:   173 KNPQAVVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELME 232
              NP +VVEYI+DIY FYKK E    VPPNYM  Q DINERMRGIL DWLIEVHYKFELME
Sbjct:   169 NNPLSVVEYINDIYCFYKKNECRSCVPPNYMENQHDINERMRGILFDWLIEVHYKFELME 228

Query:   233 ETLYLTVNLIDRFLTV-QPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSR 291
             ETLYLT+NLIDRFL V Q + RKKLQLVGVTAMLLACKYEEVSVPVV+DLILISDKAY+R
Sbjct:   229 ETLYLTINLIDRFLAVHQHIARKKLQLVGVTAMLLACKYEEVSVPVVDDLILISDKAYTR 288

Query:   292 KEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKF 351
              E+LDMEKLM NTLQFN  +PTPYVFMRRFLKA+QSDKKLELLSFF+IELCLVEYEML++
Sbjct:   289 TEILDMEKLMANTLQFNFCLPTPYVFMRRFLKAAQSDKKLELLSFFMIELCLVEYEMLQY 348

Query:   352 PPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQKAGTGKLTGV 411
              PS LAA+A+YTAQ TL G++ WSKTSE+++ Y+EE LLECSR MV  H KAGTGKLTGV
Sbjct:   349 TPSQLAASAIYTAQSTLKGYEDWSKTSEFHSGYTEEALLECSRKMVGLHHKAGTGKLTGV 408

Query:   412 HRKYSTSKFGYAAKTRLPNFLL 433
             HRKY+TSKFGYAA+     FLL
Sbjct:   409 HRKYNTSKFGYAARIEPAGFLL 430
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS
GO:0019901 "protein kinase binding" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=IEA;ISS;RCA
GO:0005515 "protein binding" evidence=IPI
GO:0006260 "DNA replication" evidence=RCA
GO:0006270 "DNA replication initiation" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0010440 "stomatal lineage progression" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0031048 "chromatin silencing by small RNA" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
TAIR|locus:2030482 CYCB2;3 "Cyclin B2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127948 CYCB2;2 "Cyclin B2;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057243 CYCB2;1 "Cyclin B2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160722 CYC1BAT [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030457 AT1G20590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080717 CYCB1;3 "CYCLIN B1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126377 CYCB1;1 "CYCLIN B1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043818 CYCB1;4 "Cyclin B1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275493 cycB "G2/M-specific cyclinB" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P46278CCNB2_MEDSVNo assigned EC number0.61460.91760.9239N/Ano
P46277CCNB1_MEDSVNo assigned EC number0.63360.96790.9883N/Ano
A2YH60CCB22_ORYSINo assigned EC number0.58960.86720.9045N/Ano
Q9SFW6CCB24_ARATHNo assigned EC number0.67420.96330.9767yesno
Q01J96CCB21_ORYSINo assigned EC number0.57000.89700.9267N/Ano
Q0D9C7CCB22_ORYSJNo assigned EC number0.58960.86720.9045yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_V0693
hypothetical protein (436 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 6e-63
COG5024440 COG5024, COG5024, Cyclin [Cell division and chromo 1e-59
pfam02984117 pfam02984, Cyclin_C, Cyclin, C-terminal domain 1e-46
cd0004388 cd00043, CYCLIN, Cyclin box fold 2e-24
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 9e-22
cd0004388 cd00043, CYCLIN, Cyclin box fold 7e-18
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 1e-17
COG5333297 COG5333, CCL1, Cdk activating kinase (CAK)/RNA pol 1e-07
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score =  198 bits (507), Expect = 6e-63
 Identities = 70/127 (55%), Positives = 97/127 (76%)

Query: 184 DIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLID 243
           DIY + ++ E     PP+Y+ QQ DIN +MR ILIDWL+EVH +F+L+ ETLYL VN +D
Sbjct: 1   DIYAYLRELEEEDRPPPDYLDQQPDINPKMRAILIDWLVEVHEEFKLLPETLYLAVNYLD 60

Query: 244 RFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVN 303
           RFL+ QPV R KLQLVGVT +L+A KYEE+  P VED + I+D AY+++E+L ME L+++
Sbjct: 61  RFLSKQPVPRTKLQLVGVTCLLIAAKYEEIYPPSVEDFVYITDNAYTKEEILRMELLILS 120

Query: 304 TLQFNMS 310
           TL +++S
Sbjct: 121 TLNWDLS 127

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|217307 pfam02984, Cyclin_C, Cyclin, C-terminal domain Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|227640 COG5333, CCL1, Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 437
KOG0653391 consensus Cyclin B and related kinase-activating p 100.0
COG5024440 Cyclin [Cell division and chromosome partitioning] 100.0
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 100.0
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 100.0
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 100.0
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.92
TIGR00569305 ccl1 cyclin ccl1. University). 99.89
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 99.86
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.85
KOG0835 367 consensus Cyclin L [General function prediction on 99.82
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 99.77
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.74
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.72
KOG1597308 consensus Transcription initiation factor TFIIB [T 99.48
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.47
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.44
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.4
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 99.33
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.74
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.69
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 98.55
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.45
KOG1598 521 consensus Transcription initiation factor TFIIIB, 98.0
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 97.43
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 97.27
PRK00423310 tfb transcription initiation factor IIB; Reviewed 96.69
KOG1674218 consensus Cyclin [General function prediction only 95.3
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 92.78
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 92.31
KOG1675343 consensus Predicted cyclin [General function predi 91.26
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 90.48
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 85.44
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 85.05
KOG1597308 consensus Transcription initiation factor TFIIB [T 84.52
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-46  Score=387.15  Aligned_cols=271  Identities=48%  Similarity=0.757  Sum_probs=247.9

Q ss_pred             CCCCCCCCCCCCccchhhhHHHHHHHHHHhhhcCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHH
Q 013766          163 PVMDIDYEEKKNPQAVVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLI  242 (437)
Q Consensus       163 ~~~did~~~~~~p~~~~eY~~dI~~~l~~~E~~~~~~~~yl~~q~~i~~~~R~~LvdWl~ev~~~~~L~~eTl~lAV~l~  242 (437)
                      .+.|+|..+..+|+++.+|+++||.||+..|.. +.+..|+..|.+++.+||.+++|||++||.+|+|.+||+|+||+|+
T Consensus       108 ~~~dl~~~d~~~~~~~~ey~~di~~~l~~~e~~-~~p~~~~~~~~e~~~~mR~iLvdwlvevh~~F~L~~ETL~LaVnli  186 (391)
T KOG0653|consen  108 SILDLDSEDKSDPSMIVEYVQDIFEYLRQLELE-FLPLSYDISQSEIRAKMRAILVDWLVEVHEKFGLSPETLYLAVNLI  186 (391)
T ss_pred             CccCcchhcccCcHHHHHHHHHHHHHHHHHHHh-hCchhhhcccccccHHHHHHHHHHHHHhhhhcCcCHHHHHHHHHHH
Confidence            689999999999999999999999999999952 3445566789999999999999999999999999999999999999


Q ss_pred             HHhhccCcccccchhhhHhhHHH-hhhhccccCCcchhHHHhhhhcccCHHHHHHHHHHHHHHcCCccccCChHHHHHHH
Q 013766          243 DRFLTVQPVVRKKLQLVGVTAML-LACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRF  321 (437)
Q Consensus       243 DRfLs~~~v~~~~lqLva~acL~-IAsK~EE~~~p~i~dl~~is~~~yt~~eI~~mE~~IL~~L~f~L~~pTp~~FL~~f  321 (437)
                      ||||++..+.+.++||+|++||| ||||+||..+|.++|++.++++.||+++|++||+.||.+|+|+++.|+|+.||++|
T Consensus       187 DRfL~~~~v~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv~isd~~~s~~~il~mE~~il~~L~f~l~~p~~~~FLrr~  266 (391)
T KOG0653|consen  187 DRFLSKVKVPLKKLQLVGVSALLSIACKYEEISLPSVEDLVLITDGAYSREEILRMEKYILNVLEFDLSVPTPLSFLRRF  266 (391)
T ss_pred             HHHHHHhcccHHHhhHHhHHHHHHHHHhhhhccCCccceeEeeeCCccchHHHHHHHHHHHhccCeeecCCchHHHHHHH
Confidence            99999999999999999999966 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCcHHHHHHHHHHHHHHHccccccCcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhcCCCHHHHHHHHHHHHHHHH
Q 013766          322 LKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQ  401 (437)
Q Consensus       322 l~~~~~~~~l~~la~~llelsl~d~~~l~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~tgys~~~l~ec~~~l~~l~~  401 (437)
                      +++...+.+.+.++.+++|++++|+.++.++||.+|+|+.++++........|...+.+++||+..++.+|.+.+..++.
T Consensus       267 ~ka~~~d~~~~~~~k~~~El~l~d~~~~~~~~s~~aaa~~~~~~~~~~~~~~w~~~~~~~sg~~~~~~~~~~~~~~~~~~  346 (391)
T KOG0653|consen  267 LKAADYDIKTRTLVKYLLELSLCDYSMLSIPPSSSAAASFTLALRMLSKGDVWSPTLEHYSGYSESYLFECARSLSALSL  346 (391)
T ss_pred             HHhhhcchhHHHHHHHHHHHHHhhhHHhccCcHHHHHHHHHHHHHHhccCCccCCCCeeccCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999877655579999999999999999999999998665


Q ss_pred             hcC-CCCcch-hhcccCCcccCccc----cCCCchhhhc
Q 013766          402 KAG-TGKLTG-VHRKYSTSKFGYAA----KTRLPNFLLG  434 (437)
Q Consensus       402 ~~~-~~~l~~-i~~KYss~kf~~va----~~~~~~~l~~  434 (437)
                      ... .+...+ +++||++++|+.++    ..+.+.....
T Consensus       347 ~~~~~~~~~~~~~~ky~~~~~~~~~~~~~~~~~~~~~~~  385 (391)
T KOG0653|consen  347 SSLQNPSLRASVLNKYNSSKFLPASPHVWILEKITSSAP  385 (391)
T ss_pred             HhcccchhHHHHHHHhcccccchhhhhcceecccccccc
Confidence            443 345565 99999999999999    4555444433

>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1675 consensus Predicted cyclin [General function prediction only] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
2b9r_A269 Crystal Structure Of Human Cyclin B1 Length = 269 9e-45
2jgz_B260 Crystal Structure Of Phospho-Cdk2 In Complex With C 2e-43
3qhr_B261 Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic 5e-41
4ii5_B258 Structure Of Pcdk2/cyclina Bound To Adp And 1 Magne 6e-41
4i3z_B257 Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES 7e-41
4bco_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 4e-40
3dog_B264 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 5e-40
2g9x_B262 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 5e-40
1vin_A268 Bovine Cyclin A3 Length = 268 5e-40
3ddq_B269 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 6e-40
3ddp_B268 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 6e-40
3bht_B262 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 6e-40
1vyw_B265 Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 7e-40
4bcq_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 1e-39
2x1n_B261 Truncation And Optimisation Of Peptide Inhibitors O 1e-39
1fin_B260 Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 1e-39
1ogu_B260 Structure Of Human Thr160-phospho Cdk2/cyclin A Com 1e-39
1qmz_B259 Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com 1e-39
1jst_B258 Phosphorylated Cyclin-Dependent Kinase-2 Bound To C 1e-39
1e9h_B261 Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex 1e-39
3f5x_B256 Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Boun 2e-39
4bcq_D262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 2e-39
1w98_B283 The Structural Basis Of Cdk2 Activation By Cyclin E 3e-19
3g33_B306 Crystal Structure Of Cdk4CYCLIN D3 Length = 306 1e-16
2w96_A271 Crystal Structure Of Cdk4 In Complex With A D-Type 3e-14
2w9z_A257 Crystal Structure Of Cdk4 In Complex With A D-Type 3e-14
2i53_A258 Crystal Structure Of Cyclin K Length = 258 2e-05
1jow_A254 Crystal Structure Of A Complex Of Human Cdk6 And A 3e-05
1bu2_A229 X-Ray Structure Of A Viral Cyclin From Herpesvirus 4e-05
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1 Length = 269 Back     alignment and structure 
Iteration: 1

 Score =  177 bits (449), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 98/256 (38%), Positives = 154/256 (60%), Gaps = 10/256 (3%)
Query: 180 EYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTV 239
           EY+ DIY + ++ E++  V P Y+  + ++   MR ILIDWL++V  KF L++ET+Y+TV
Sbjct: 5   EYVKDIYAYLRQLEAAQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTV 63
Query: 240 NLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEK 299
           ++IDRF+    V +K LQLVGVTAM +A KYEE+  P + D   ++D  Y++ ++  ME 
Sbjct: 64  SIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEM 123
Query: 300 LMVNTLQFNMSVPTPYVFMRRFLKASQSDKKLELLSFFLIELCLVEYEMLKFPPSLLAAA 359
            ++  L F +  P P  F+RR  K  + D +   L+ +L+EL +++Y+M+ FPPS +AA 
Sbjct: 124 KILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAG 183
Query: 360 AVYTAQCTLSGFKQWSKTSEWYTSYSEEQLL----ECSRLMVIFHQKAGTGKLTGVHRKY 415
           A   A   L    +W+ T + Y SY+EE LL      ++ +V+ +Q  G  K   V  KY
Sbjct: 184 AFSLALKILDN-GEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQ--GLTKHMTVKNKY 240
Query: 416 STSKFGYAAKTRLPNF 431
           +TSK  +A  + LP  
Sbjct: 241 ATSK--HAKISTLPQL 254
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 260 Back     alignment and structure
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 261 Back     alignment and structure
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium Ion Length = 258 Back     alignment and structure
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 257 Back     alignment and structure
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN Complex With The Inhibitor N-&-N1 Length = 264 Back     alignment and structure
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Nu6271 Length = 262 Back     alignment and structure
>pdb|1VIN|A Chain A, Bovine Cyclin A3 Length = 268 Back     alignment and structure
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine Length = 269 Back     alignment and structure
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Cr8 Length = 268 Back     alignment and structure
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 262 Back     alignment and structure
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 265 Back     alignment and structure
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2, Cyclin A Through Structure Guided Design Length = 261 Back     alignment and structure
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 260 Back     alignment and structure
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 260 Back     alignment and structure
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 259 Back     alignment and structure
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 258 Back     alignment and structure
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 261 Back     alignment and structure
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At Its Active Site Length = 256 Back     alignment and structure
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 283 Back     alignment and structure
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3 Length = 306 Back     alignment and structure
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 271 Back     alignment and structure
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 257 Back     alignment and structure
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K Length = 258 Back     alignment and structure
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 254 Back     alignment and structure
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri Length = 229 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 1e-125
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 1e-124
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 1e-112
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 1e-110
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 1e-109
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 1e-108
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 1e-100
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 6e-91
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 2e-36
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 5e-20
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 3e-17
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 1e-16
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 1e-16
2ivx_A257 Cyclin-T2; transcription regulation, cell division 6e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
 Score =  363 bits (934), Expect = e-125
 Identities = 95/257 (36%), Positives = 148/257 (57%), Gaps = 3/257 (1%)

Query: 178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYL 237
           V +Y +DI+ + ++ E        YM +Q DI   MR IL+DWL+EV  +++L  ETL+L
Sbjct: 3   VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 62

Query: 238 TVNLIDRFLTVQPVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDM 297
            VN IDRFL+   V+R KLQLVG  AMLLA K+EE+  P V + + I+D  Y++K+VL M
Sbjct: 63  AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122

Query: 298 EKLMVNTLQFNMSVPTPYVFMRRFL-KASQSDKKLELLSFFLIELCLVEYE-MLKFPPSL 355
           E L++  L F+++ PT   F+ ++      ++ K+E L+ FL EL L++ +  LK+ PS+
Sbjct: 123 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 182

Query: 356 LAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQKAGTGKLTGVHRKY 415
           +A AA + A  T++G + W ++    T Y+ E L  C   +   + KA       +  KY
Sbjct: 183 IAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 241

Query: 416 STSKFGYAAKTRLPNFL 432
             SK+   +    P  L
Sbjct: 242 KNSKYHGVSLLNPPETL 258
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query437
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 100.0
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 99.97
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.96
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.92
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.81
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.58
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 98.28
1ais_B200 TFB TFIIB, protein (transcription initiation facto 97.36
1c9b_A207 General transcription factor IIB; protein-DNA comp 96.22
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 94.03
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 92.82
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 91.9
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 91.29
2ivx_A257 Cyclin-T2; transcription regulation, cell division 90.08
2b9r_A 269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 90.02
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 88.7
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 87.92
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 87.69
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 87.68
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 87.5
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 87.03
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 86.77
3g33_B 306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 84.84
1w98_B 283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 84.58
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 84.24
1jkw_A 323 Cyclin H; cell cycle, cell division, nuclear prote 82.93
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
Probab=100.00  E-value=3.2e-55  Score=426.66  Aligned_cols=255  Identities=38%  Similarity=0.590  Sum_probs=245.7

Q ss_pred             hhhhHHHHHHHHHHhhhcCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhccCcccccchh
Q 013766          178 VVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQPVVRKKLQ  257 (437)
Q Consensus       178 ~~eY~~dI~~~l~~~E~~~~~~~~yl~~q~~i~~~~R~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~~v~~~~lq  257 (437)
                      |+||++|||.||++.|.++.+.++|+..|++|++.||.++++||++++..|+++++|+++|++|+|||+++..+.+.++|
T Consensus         3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lq   82 (260)
T 2cch_B            3 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQ   82 (260)
T ss_dssp             CCTTHHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             hHhHHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHhhHHHhhhhccccCCcchhHHHhhhhcccCHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHcCCcH-HHHHHHH
Q 013766          258 LVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKASQSDK-KLELLSF  336 (437)
Q Consensus       258 Lva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~~eI~~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~-~l~~la~  336 (437)
                      ++|+||||||||+||..+|++++|+.++++.|++++|.+||+.||++|+|+++.|||++|+.+|++.++.+. ++..+|+
T Consensus        83 lv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~  162 (260)
T 2cch_B           83 LVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAM  162 (260)
T ss_dssp             HHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998665 8899999


Q ss_pred             HHHHHHHcccc-ccCcCHHHHHHHHHHHHHHHhcCCCCchhhhhhhcCCCHHHHHHHHHHHHHHHHhcCCCCcchhhccc
Q 013766          337 FLIELCLVEYE-MLKFPPSLLAAAAVYTAQCTLSGFKQWSKTSEWYTSYSEEQLLECSRLMVIFHQKAGTGKLTGVHRKY  415 (437)
Q Consensus       337 ~llelsl~d~~-~l~~~PS~IAaAaI~lA~~~l~~~~~W~~~l~~~tgys~~~l~ec~~~l~~l~~~~~~~~l~~i~~KY  415 (437)
                      +++++++.++. ++.|+||.||+|||++|+..++. +.|+..+..++||++++|.+|++.|..++.+....++++|++||
T Consensus       163 ~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~~~~i~~Ky  241 (260)
T 2cch_B          163 FLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY  241 (260)
T ss_dssp             HHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSSCCHHHHHH
T ss_pred             HHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            99999999999 99999999999999999988765 78999999999999999999999999999988888899999999


Q ss_pred             CCcccCccccCCCchhhh
Q 013766          416 STSKFGYAAKTRLPNFLL  433 (437)
Q Consensus       416 ss~kf~~va~~~~~~~l~  433 (437)
                      ++++|+.||+++||+.|.
T Consensus       242 ~~~~~~~vs~~~~~~~~~  259 (260)
T 2cch_B          242 KNSKYHGVSLLNPPETLN  259 (260)
T ss_dssp             TSGGGTTGGGSCCCSCCC
T ss_pred             CcccccceeCCCCcccCC
Confidence            999999999999998763
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 437
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 1e-45
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 2e-45
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 2e-42
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 3e-40
d2cchb2124 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [T 8e-40
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 1e-39
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 6e-30
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 9e-25
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 3e-22
d1w98b1130 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Huma 3e-04
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 1e-45
 Identities = 39/137 (28%), Positives = 73/137 (53%), Gaps = 1/137 (0%)

Query: 175 PQAVVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEET 234
           P       ++++      E +     +++ Q   +  +MR IL+DWL+EV   ++L  ET
Sbjct: 4   PVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRET 63

Query: 235 LYLTVNLIDRFLTVQPVVR-KKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKE 293
            YL  +  DR++  Q  V    LQL+G++++ +A K EE+  P +     ++D A S  E
Sbjct: 64  FYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDE 123

Query: 294 VLDMEKLMVNTLQFNMS 310
           +L ME +++  L++ +S
Sbjct: 124 ILTMELMIMKALKWRLS 140
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 124 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 130 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query437
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 100.0
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.98
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.97
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.97
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.95
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.89
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.79
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.77
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.74
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 98.58
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 98.46
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.34
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 98.34
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.3
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 98.21
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 98.1
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.04
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.73
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.72
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 97.7
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 97.4
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 96.23
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 93.41
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 90.45
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 89.2
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 89.1
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 87.38
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 86.28
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 85.78
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 84.47
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-33  Score=245.09  Aligned_cols=137  Identities=29%  Similarity=0.564  Sum_probs=131.8

Q ss_pred             CccchhhhHHHHHHHHHHhhhcCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHhhccC-ccc
Q 013766          174 NPQAVVEYIDDIYNFYKKAESSGYVPPNYMAQQFDINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLTVQ-PVV  252 (437)
Q Consensus       174 ~p~~~~eY~~dI~~~l~~~E~~~~~~~~yl~~q~~i~~~~R~~LvdWl~ev~~~~~L~~eTl~lAV~l~DRfLs~~-~v~  252 (437)
                      .|.++..|.+|||.+|.++|.++.++++|+..|++++++||.++++||++++..++++++|+|+||+||||||+.. .+.
T Consensus         3 ~p~~~~~~~~dI~~~l~~~E~~~~~~~~~l~~q~~i~~~~R~~lidW~~~v~~~~~l~~et~~lAv~llDryl~~~~~v~   82 (140)
T d1w98b2           3 LPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVV   82 (140)
T ss_dssp             SCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             CccccccCHHHHHHHHHHHHHhhCCChHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhcccccc
Confidence            5788899999999999999999988999999999999999999999999999999999999999999999999855 489


Q ss_pred             ccchhhhHhhHHHhhhhccccCCcchhHHHhhhhcccCHHHHHHHHHHHHHHcCCccc
Q 013766          253 RKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMS  310 (437)
Q Consensus       253 ~~~lqLva~acL~IAsK~EE~~~p~i~dl~~is~~~yt~~eI~~mE~~IL~~L~f~L~  310 (437)
                      ++++||+|+||||||+|+||..+|.+++++.++++.|+.++|.+||+.||++|+|+|+
T Consensus        83 ~~~lqL~a~acL~IAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~~~Ln  140 (140)
T d1w98b2          83 KTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS  140 (140)
T ss_dssp             GGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHhHHHHHHHHHHHHHcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCcCC
Confidence            9999999999999999999999999999999999999999999999999999999985
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure