Citrus Sinensis ID: 013798

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430------
MEPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS
ccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccEEEccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccEEEHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHccc
ccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHccHHHHHHHHHHHccEEcHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHEcccccEEccccccEcHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHccEcccccEEccccccEcHHHHHHHHHHHHHcccccccccccHHHHHHHcEcccccEcccccccccHHHHHHHHHHHHHHccHHHccHHHHHHHHHHcEcccccEcccccccccHHHHHHHHHHHHHHccHHHccHHHHHHHHHHHcccccccHHcccccccccccccccHHHcccccccccccccccccccHHHHHHHHHHHcEcccccEcccccccccHHHHHHHHHHHHHHHEccccccccccccccccccccccccccccEEcccHHHHHHHHHHHHcc
mepdteprgtvtqREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQqlgpsfcsldanrpwICYWILHSMALLgefvdadleDRTIEFLSrcqdpnggygggpgqmphLATTYAAVNALISlggekslpsinrsKVYTFLKcmkdpsgafrmhdageiDVRACYTAISVASILNILDDELLQNVGNYILSCqtyeggiagepgseahggytfCGLAAMILINEADRLDLDALIGWVVFRqgveggfqgrtnkLVDGCYSFWQGGVFALLRRFHsiigesptpvdqrgaecsidntqtttasdvsegdgssdeissqgdehchfqhrereplfHSIALQRYLLLCsqdprgglrdklrkprdyyhtcyclsglsicqhswlkdedssplpravlgpysnvlepvhpVFNIVLDRYHEaheffsrs
mepdteprgtvtqreqSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLggekslpsinRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGesptpvdqrgaecsidntqtttasdvsegdgSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS
MEPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNggygggpgQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTAsdvsegdgssdeissqgdeHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS
*****************MVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIG***************************************************EPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDED**PLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEF****
MEPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR*
************QREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNT**************************HFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS
*****EPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS
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MEPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query436 2.2.26 [Sep-21-2011]
Q04903419 Protein farnesyltransfera N/A no 0.892 0.928 0.608 1e-155
Q38920482 Protein farnesyltransfera yes no 0.979 0.885 0.611 1e-143
Q02293437 Protein farnesyltransfera yes no 0.848 0.846 0.448 3e-89
P49356437 Protein farnesyltransfera yes no 0.848 0.846 0.448 4e-89
P49355437 Protein farnesyltransfera yes no 0.848 0.846 0.448 7e-89
Q8K2I1437 Protein farnesyltransfera yes no 0.855 0.853 0.444 1e-88
Q55D51500 Protein farnesyltransfera yes no 0.766 0.668 0.346 4e-60
O13782382 Protein farnesyltransfera yes no 0.839 0.958 0.334 1e-55
P22007431 Protein farnesyltransfera yes no 0.850 0.860 0.322 3e-50
B0G172339 Probable geranylgeranyl t no no 0.653 0.840 0.273 5e-30
>sp|Q04903|FNTB_PEA Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB PE=2 SV=1 Back     alignment and function desciption
 Score =  546 bits (1408), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 273/449 (60%), Positives = 324/449 (72%), Gaps = 60/449 (13%)

Query: 7   PRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           P  TV+QR+Q +V + V  +Y ++A +PP AQ+++                         
Sbjct: 10  PTPTVSQRDQWIVESQVFHIYQLFANIPPNAQSII------------------------- 44

Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYA 126
               RPW+CYWI+HS+ALLGE +D DLED T++FL+RCQDPNGGY GGPGQMPHLATTYA
Sbjct: 45  ----RPWLCYWIIHSIALLGESIDDDLEDNTVDFLNRCQDPNGGYAGGPGQMPHLATTYA 100

Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVN LI+LGGEKSL SINR+K+Y F++ MK P+G FRMHD GEIDVRACYTAISVAS+LN
Sbjct: 101 AVNTLITLGGEKSLASINRNKLYGFMRRMKQPNGGFRMHDEGEIDVRACYTAISVASVLN 160

Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           ILDDEL++NVG++ILSCQTYEGG+AGEPGSEAHGGYTFCGLAAMILI E +RLDL  L+ 
Sbjct: 161 ILDDELIKNVGDFILSCQTYEGGLAGEPGSEAHGGYTFCGLAAMILIGEVNRLDLPRLLD 220

Query: 247 WVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDN 306
           WVVFRQG E GFQGRTNKLVDGCYSFWQGG  ALL+R HSII       D++ AE S   
Sbjct: 221 WVVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLHSII-------DEQMAEAS--- 270

Query: 307 TQTTTASDVSEGDGSSDEISSQGDEHCHF--------------------QHREREPLFHS 346
            Q  T SD  E     D  SS    H                       + R+ EPLFHS
Sbjct: 271 -QFVTVSDAPEEKECLDGTSSHATSHIRHEGMNESCSSDVKNIGYNFISEWRQSEPLFHS 329

Query: 347 IALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLG 406
           IALQ+Y+LLCSQ+  GGLRDK  K RD+YH+CYCLSGLS+CQ+SW K  DS PLP+ V+G
Sbjct: 330 IALQQYILLCSQEQDGGLRDKPGKRRDHYHSCYCLSGLSLCQYSWSKRPDSPPLPKVVMG 389

Query: 407 PYSNVLEPVHPVFNIVLDRYHEAHEFFSR 435
           PYSN+LEP+HP+FN+VLDRY EAHEFFS+
Sbjct: 390 PYSNLLEPIHPLFNVVLDRYREAHEFFSQ 418
Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
Pisum sativum (taxid: 3888)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 8
>sp|Q38920|FNTB_ARATH Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana GN=FTB PE=1 SV=3 Back     alignment and function description
>sp|Q02293|FNTB_RAT Protein farnesyltransferase subunit beta OS=Rattus norvegicus GN=Fntb PE=1 SV=1 Back     alignment and function description
>sp|P49356|FNTB_HUMAN Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB PE=1 SV=1 Back     alignment and function description
>sp|P49355|FNTB_BOVIN Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2 SV=1 Back     alignment and function description
>sp|Q8K2I1|FNTB_MOUSE Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb PE=1 SV=1 Back     alignment and function description
>sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta OS=Dictyostelium discoideum GN=fntB PE=3 SV=1 Back     alignment and function description
>sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1 Back     alignment and function description
>sp|P22007|FNTB_YEAST Protein farnesyltransferase subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAM1 PE=1 SV=2 Back     alignment and function description
>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query436
225452468438 PREDICTED: protein farnesyltransferase s 0.995 0.990 0.681 1e-168
255552586438 protein farnesyltransferase beta subunit 0.974 0.970 0.673 1e-165
356548601455 PREDICTED: protein farnesyltransferase s 0.970 0.929 0.661 1e-165
356516702455 PREDICTED: protein farnesyltransferase s 0.961 0.920 0.638 1e-165
296087672421 unnamed protein product [Vitis vinifera] 0.956 0.990 0.690 1e-164
417482419 RecName: Full=Protein farnesyltransferas 0.892 0.928 0.608 1e-153
449446662428 PREDICTED: protein farnesyltransferase s 0.967 0.985 0.644 1e-149
242058625451 hypothetical protein SORBIDRAFT_03g03400 0.981 0.949 0.589 1e-147
20466314443 beta subunit of protein farnesyl transfe 0.979 0.963 0.611 1e-141
15242635482 protein farnesyltransferase subunit beta 0.979 0.885 0.611 1e-141
>gi|225452468|ref|XP_002278403.1| PREDICTED: protein farnesyltransferase subunit beta-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 300/440 (68%), Positives = 354/440 (80%), Gaps = 6/440 (1%)

Query: 1   MEPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQL 60
           M+       TVTQREQ MV + V  +Y + ++VP  AQ++++ELQR  H+E+L  GL+QL
Sbjct: 1   MDSSETQSPTVTQREQWMVESQVFQMYELLSSVPRNAQSVLLELQRDKHIEFLTNGLRQL 60

Query: 61  GPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH 120
           GPSFC LDANRPW+CYWILHS+ALLG+ VD +LE+ TI+FLSRCQDPNGGYGGGPGQMPH
Sbjct: 61  GPSFCVLDANRPWLCYWILHSIALLGDSVDDELENNTIDFLSRCQDPNGGYGGGPGQMPH 120

Query: 121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAIS 180
           LATTYAA+NALI+LGG +SL SINR KVYTFL+ MKDPSGAFRMHDAGE+DVRACYTAIS
Sbjct: 121 LATTYAAINALITLGGHRSLSSINRGKVYTFLRRMKDPSGAFRMHDAGEMDVRACYTAIS 180

Query: 181 VASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLD 240
           VAS+L ILDDEL++ VGN+ILSCQTYEGGI+GEPGSEAHGGYTFCGLA M+LI E +RLD
Sbjct: 181 VASVLTILDDELVKGVGNFILSCQTYEGGISGEPGSEAHGGYTFCGLATMVLIGEVNRLD 240

Query: 241 LDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGA 300
           L +LI WVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFAL+++ HSII E    +D  G+
Sbjct: 241 LTSLIDWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALIQKLHSIIEEQLRLLDAGGS 300

Query: 301 ECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHF----QHREREPLFHSIALQRYLLLC 356
             +ID+ Q  + S  S   G  D   S    +  F    +  E EPLFHSIALQ+Y++LC
Sbjct: 301 --AIDSPQLASISCHSGKRGLHDTSGSAKFSNIGFNFLKEPAEMEPLFHSIALQQYIILC 358

Query: 357 SQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVH 416
           SQ   GG RDK  K RDYYHTCYCLSGLS+ Q+S+ KD DS PLPRAV GPYSN+LEP+H
Sbjct: 359 SQLQEGGFRDKPGKHRDYYHTCYCLSGLSVAQYSYSKDADSPPLPRAVFGPYSNLLEPIH 418

Query: 417 PVFNIVLDRYHEAHEFFSRS 436
           P++N++LD YHEAHEFFS S
Sbjct: 419 PLYNVILDLYHEAHEFFSTS 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255552586|ref|XP_002517336.1| protein farnesyltransferase beta subunit, putative [Ricinus communis] gi|223543347|gb|EEF44878.1| protein farnesyltransferase beta subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356548601|ref|XP_003542689.1| PREDICTED: protein farnesyltransferase subunit beta [Glycine max] Back     alignment and taxonomy information
>gi|356516702|ref|XP_003527032.1| PREDICTED: protein farnesyltransferase subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|296087672|emb|CBI34928.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|417482|sp|Q04903.1|FNTB_PEA RecName: Full=Protein farnesyltransferase subunit beta; Short=FTase-beta; AltName: Full=CAAX farnesyltransferase subunit beta; AltName: Full=Ras proteins prenyltransferase subunit beta gi|169049|gb|AAA33649.1| farnesyl-protein transferase beta-subunit [Pisum sativum] Back     alignment and taxonomy information
>gi|449446662|ref|XP_004141090.1| PREDICTED: protein farnesyltransferase subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|242058625|ref|XP_002458458.1| hypothetical protein SORBIDRAFT_03g034000 [Sorghum bicolor] gi|241930433|gb|EES03578.1| hypothetical protein SORBIDRAFT_03g034000 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|20466314|gb|AAM20474.1| beta subunit of protein farnesyl transferase ERA1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15242635|ref|NP_198844.1| protein farnesyltransferase subunit beta [Arabidopsis thaliana] gi|334302904|sp|Q38920.3|FNTB_ARATH RecName: Full=Protein farnesyltransferase subunit beta; Short=FTase-beta; AltName: Full=CAAX farnesyltransferase subunit beta; AltName: Full=Enhanced response to abscisic acid 1; AltName: Full=Ras proteins prenyltransferase subunit beta gi|8347240|gb|AAF74564.1|AF214106_1 farnesyltransferase beta subunit [Arabidopsis thaliana] gi|145651772|gb|ABP88111.1| At5g40280 [Arabidopsis thaliana] gi|332007146|gb|AED94529.1| protein farnesyltransferase subunit beta [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query436
TAIR|locus:2173802482 ERA1 "ENHANCED RESPONSE TO ABA 0.979 0.885 0.579 3.4e-132
ZFIN|ZDB-GENE-030131-2220419 fntb "farnesyltransferase, CAA 0.621 0.646 0.494 1e-88
UNIPROTKB|P49355437 FNTB "Protein farnesyltransfer 0.621 0.620 0.483 4.4e-88
UNIPROTKB|P49356437 FNTB "Protein farnesyltransfer 0.621 0.620 0.48 1.5e-87
RGD|620119437 Fntb "farnesyltransferase, CAA 0.621 0.620 0.48 1.9e-87
UNIPROTKB|Q02293437 Fntb "Protein farnesyltransfer 0.621 0.620 0.48 1.9e-87
MGI|MGI:1861305437 Fntb "farnesyltransferase, CAA 0.621 0.620 0.48 5e-87
UNIPROTKB|F1Q0W7437 FNTB "Uncharacterized protein" 0.614 0.613 0.489 5e-87
UNIPROTKB|B4DL54471 CHURC1-FNTB "cDNA FLJ59570, hi 0.550 0.509 0.518 1.3e-86
UNIPROTKB|B4E1A0391 CHURC1-FNTB "cDNA FLJ58825, hi 0.550 0.613 0.518 1.3e-86
TAIR|locus:2173802 ERA1 "ENHANCED RESPONSE TO ABA 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1296 (461.3 bits), Expect = 3.4e-132, P = 3.4e-132
 Identities = 252/435 (57%), Positives = 310/435 (71%)

Query:    10 TVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDA 69
             TV+QREQ +V NDV  +Y+ +       Q  MME+QR   ++YL++GL+QLGP F SLDA
Sbjct:    47 TVSQREQFLVENDVFGIYNYFDASDVSTQKYMMEIQRDKQLDYLMKGLRQLGPQFSSLDA 106

Query:    70 NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYAAVN 129
             NRPW+CYWILHS+ALLGE VD +LE   I+FL RCQ           Q+PHLATTYAAVN
Sbjct:   107 NRPWLCYWILHSIALLGETVDDELESNAIDFLGRCQGSEGGYGGGPGQLPHLATTYAAVN 166

Query:   130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD 189
             AL++LGG+K+L SINR K+  FL+ MKD SG FRMHD GE+DVRACYTAISVASILNI+D
Sbjct:   167 ALVTLGGDKALSSINREKMSCFLRRMKDTSGGFRMHDMGEMDVRACYTAISVASILNIMD 226

Query:   190 DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249
             DEL Q +G+YILSCQTYEGGI GEPGSEAHGGYT+CGLAAMILINE DRL+LD+L+ W V
Sbjct:   227 DELTQGLGDYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINEVDRLNLDSLMNWAV 286

Query:   250 FRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRF-----HSIIGESPTP--VDQRGAEC 302
              RQGVE GFQGRTNKLVDGCY+FWQ     LL+R      H + G S      ++     
Sbjct:   287 HRQGVEMGFQGRTNKLVDGCYTFWQAAPCVLLQRLYSTNDHDVHGSSHISEGTNEEHHAH 346

Query:   303 SIDNTQTTTAXXXXXXXXXXXXXXXXXXXHCH-FQHREREPLFHSIALQRYLLLCSQDPR 361
               D+ + +                     H   + +R  + +F S+ LQRY+LLCS+ P 
Sbjct:   347 DEDDLEDSDDDDDSDEDNDEDSVNGHRIHHTSTYINRRMQLVFDSLGLQRYVLLCSKIPD 406

Query:   362 GGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNI 421
             GG RDK RKPRD+YHTCYCLSGLS+ QH+WLKDED+ PL R ++G YSN+LEPV  + NI
Sbjct:   407 GGFRDKPRKPRDFYHTCYCLSGLSVAQHAWLKDEDTPPLTRDIMGGYSNLLEPVQLLHNI 466

Query:   422 VLDRYHEAHEFFSRS 436
             V+D+Y+EA EFF ++
Sbjct:   467 VMDQYNEAIEFFFKA 481
GO:0003824 "catalytic activity" evidence=IEA
GO:0004660 "protein farnesyltransferase activity" evidence=IMP
GO:0005965 "protein farnesyltransferase complex" evidence=IMP
GO:0018342 "protein prenylation" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009414 "response to water deprivation" evidence=IMP
GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
GO:0004311 "farnesyltranstransferase activity" evidence=ISS
GO:0009737 "response to abscisic acid stimulus" evidence=IMP
GO:0009934 "regulation of meristem structural organization" evidence=IMP
ZFIN|ZDB-GENE-030131-2220 fntb "farnesyltransferase, CAAX box, beta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P49355 FNTB "Protein farnesyltransferase subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P49356 FNTB "Protein farnesyltransferase subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|620119 Fntb "farnesyltransferase, CAAX box, beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q02293 Fntb "Protein farnesyltransferase subunit beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1861305 Fntb "farnesyltransferase, CAAX box, beta" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q0W7 FNTB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B4DL54 CHURC1-FNTB "cDNA FLJ59570, highly similar to Protein farnesyltransferase subunit beta (EC 2.5.1.58)" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B4E1A0 CHURC1-FNTB "cDNA FLJ58825, highly similar to Protein farnesyltransferase subunit beta (EC 2.5.1.58)" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q38920FNTB_ARATH2, ., 5, ., 1, ., 5, 80.61140.97930.8858yesno
O13782FNTB_SCHPO2, ., 5, ., 1, ., 5, 80.33410.83940.9581yesno
P49355FNTB_BOVIN2, ., 5, ., 1, ., 5, 80.44850.84860.8466yesno
P49356FNTB_HUMAN2, ., 5, ., 1, ., 5, 80.44850.84860.8466yesno
Q02293FNTB_RAT2, ., 5, ., 1, ., 5, 80.44850.84860.8466yesno
P22007FNTB_YEAST2, ., 5, ., 1, ., 5, 80.32280.85090.8607yesno
Q8K2I1FNTB_MOUSE2, ., 5, ., 1, ., 5, 80.44470.85550.8535yesno
Q04903FNTB_PEA2, ., 5, ., 1, ., 5, 80.60800.89220.9284N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.5.10.976
4th Layer2.5.1.580.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020744001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (439 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00001930001
SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (331 aa)
   •• • 0.864

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query436
PLN02710439 PLN02710, PLN02710, farnesyltranstransferase subun 0.0
cd02893299 cd02893, FTase, Protein farnesyltransferase (FTase 1e-167
cd02890286 cd02890, PTase, Protein prenyltransferase (PTase) 1e-123
COG5029342 COG5029, CAL1, Prenyltransferase, beta subunit [Po 5e-80
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 6e-56
cd02895307 cd02895, GGTase-I, Geranylgeranyltransferase types 9e-51
cd02894287 cd02894, GGTase-II, Geranylgeranyltransferase type 1e-45
PLN03201316 PLN03201, PLN03201, RAB geranylgeranyl transferase 3e-40
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 9e-19
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 7e-17
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 9e-15
cd02894287 cd02894, GGTase-II, Geranylgeranyltransferase type 5e-13
COG5029342 COG5029, CAL1, Prenyltransferase, beta subunit [Po 5e-12
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 6e-10
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 6e-09
cd02895307 cd02895, GGTase-I, Geranylgeranyltransferase types 2e-08
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 2e-07
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 3e-05
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 7e-05
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 1e-04
PLN03201316 PLN03201, PLN03201, RAB geranylgeranyl transferase 3e-04
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 0.001
>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta Back     alignment and domain information 
 Score =  725 bits (1873), Expect = 0.0
 Identities = 295/440 (67%), Positives = 349/440 (79%), Gaps = 6/440 (1%)

Query: 1   MEPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQL 60
                 PR TVTQREQ  V   V  +Y  +A+ PP AQ++M+EL R+ H+EYL RGL+QL
Sbjct: 1   RVSSELPRLTVTQREQWKVEAKVFDIYRSFASAPPNAQSVMLELWREKHLEYLTRGLRQL 60

Query: 61  GPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH 120
           GPSF  LDANRPW+CYWILHS+ALLGE +D +LE+ TI+FLSRCQDPNGGYGGGPGQ+PH
Sbjct: 61  GPSFSVLDANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLPH 120

Query: 121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAIS 180
           LATTYAAVN L+++GGE++L SINR K+YTFL  MKDPSG FRMHD GE+DVRACYTAIS
Sbjct: 121 LATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAIS 180

Query: 181 VASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLD 240
           VAS+LNILDDEL++ VG+YILSCQTYEGGI GEPG+EAHGGYTFCGLAAMILINE DRLD
Sbjct: 181 VASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLD 240

Query: 241 LDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGE----SPTPVD 296
           L +LI WVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALL++  +I+ E      + + 
Sbjct: 241 LPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIM 300

Query: 297 QRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLC 356
               E   D  +T+++     GD  S + S  G +     +++  PLFHSIALQ+Y+LLC
Sbjct: 301 FEELED--DACETSSSGKDDAGDTDSADYSKVGFDFIKASNQQMGPLFHSIALQQYILLC 358

Query: 357 SQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVH 416
           SQ   GGLRDK  K RDYYHTCYCLSGLS+ Q+S  KDEDS PLPR VLGPYSN+LEP+H
Sbjct: 359 SQVLDGGLRDKPGKSRDYYHTCYCLSGLSVAQYSASKDEDSPPLPRHVLGPYSNLLEPIH 418

Query: 417 PVFNIVLDRYHEAHEFFSRS 436
           P++N+VLD+YHEA EFFS  
Sbjct: 419 PLYNVVLDKYHEAIEFFSSK 438

Length = 439
>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 436
KOG0365423 consensus Beta subunit of farnesyltransferase [Pos 100.0
PLN02710439 farnesyltranstransferase subunit beta 100.0
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 100.0
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 100.0
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 100.0
KOG0366329 consensus Protein geranylgeranyltransferase type I 100.0
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 100.0
KOG0367347 consensus Protein geranylgeranyltransferase Type I 100.0
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 100.0
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 100.0
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 100.0
PLN02710 439 farnesyltranstransferase subunit beta 100.0
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 100.0
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 100.0
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 100.0
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 100.0
KOG0366329 consensus Protein geranylgeranyltransferase type I 100.0
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 100.0
KOG0365423 consensus Beta subunit of farnesyltransferase [Pos 100.0
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.97
KOG0367347 consensus Protein geranylgeranyltransferase Type I 99.94
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.88
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.75
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.74
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 99.73
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.72
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.69
PLN03012759 Camelliol C synthase 99.68
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 99.67
PLN02993763 lupeol synthase 99.67
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 99.64
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.63
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.63
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 99.62
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 99.59
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 99.58
COG1689274 Uncharacterized protein conserved in archaea [Func 99.49
PLN02993763 lupeol synthase 99.36
PLN03012759 Camelliol C synthase 99.29
COG1689274 Uncharacterized protein conserved in archaea [Func 99.23
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 99.18
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.15
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.12
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.11
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 99.11
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 99.08
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.0
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 98.79
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 98.73
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 98.39
PF07678246 A2M_comp: A-macroglobulin complement component; In 98.32
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 98.12
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 97.86
PF07678246 A2M_comp: A-macroglobulin complement component; In 97.84
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 97.77
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 97.14
KOG1366 1436 consensus Alpha-macroglobulin [Posttranslational m 92.93
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 92.3
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 91.61
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3e-102  Score=747.90  Aligned_cols=385  Identities=54%  Similarity=0.931  Sum_probs=360.5

Q ss_pred             CCCCCccccccchhhhHHHHHHHHHHHhcCCCchhhHHHHHhhhhhHHHHHHhhhhcCCccceecCCCcchhHHHHHHHH
Q 013798            4 DTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMA   83 (436)
Q Consensus         4 ~~~~~~t~ts~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~   83 (436)
                      |+..+.|.||++|.+||..+.++|+.+.+.....+..+++| |+||..||.+.|+++|+.|+.+|++|+|++||++++|+
T Consensus        33 Dd~~v~t~ts~eQ~~~Et~v~~vl~~f~~~~~~~~~~~~~~-r~kH~~YL~~~Lr~Lp~~~~~LDASR~Wm~YWil~sl~  111 (423)
T KOG0365|consen   33 DDLHVDTVTSIEQKETETDVFEVLQSFEEISDDDPRLEPIF-RQKHLMYLDKMLRQLPSQYTCLDASRPWMCYWILNSLA  111 (423)
T ss_pred             hhhhcchHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHH-HHHHHHHHHHHHHhCCCcccccccCcchhHHHHHHHHH
Confidence            45568999999999999999999998876544444455677 99999999999999999999999999999999999999


Q ss_pred             hhcccchhhhhcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCccc
Q 013798           84 LLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFR  163 (436)
Q Consensus        84 lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF~  163 (436)
                      ||+..++++..+++|+||..||.|.|||||+||+.+|++.||+||++|.++|.+++++.|||++++.||.++++|||||+
T Consensus       112 lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFr  191 (423)
T KOG0365|consen  112 LLDEWLDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFR  191 (423)
T ss_pred             HhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeE
Confidence            99988999999999999999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             cccCcccchhhhhhHHHHHHHHhhccHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCccc
Q 013798          164 MHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDA  243 (436)
Q Consensus       164 ~~~~ge~D~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~~  243 (436)
                      .+.+||+|+|.+|||+++++|+|++.++..+.+.+||.+||+++||||+.|+.|+|++|||||+|+|++|++.+.+|.++
T Consensus       192 mh~~GE~DvRs~YcA~svasllni~~deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~  271 (423)
T KOG0365|consen  192 MHVEGEVDVRSAYCALSVASLLNIPMDELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEK  271 (423)
T ss_pred             eecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeeecc-cccccccccccccccchhccchhHHHHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCCC
Q 013798          244 LIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSS  322 (436)
Q Consensus       244 l~~wL~~rQ~-~~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  322 (436)
                      +++|..+||+ .+|||+||+||+||+|||||++|++.||.+........                               
T Consensus       272 Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFWvga~~~il~~~~~~~~~s-------------------------------  320 (423)
T KOG0365|consen  272 LLEWAVRRQMRFEGGFQGRTNKLVDGCYSFWVGASAPILQAFYSSAGHS-------------------------------  320 (423)
T ss_pred             HHHHHHHhhhhhhccccccccchhhhhHHHHhcchHHHHHHHhcccccc-------------------------------
Confidence            9999999999 89999999999999999999999999999976421111                               


Q ss_pred             CCCCCCCCCccccccccccchhhHHHHHHhhhhhccCCCCccCCCCCCCCCcceeeeeccCCchhhccccCCCCCCCCcc
Q 013798          323 DEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPR  402 (436)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~~~~~~~~~~  402 (436)
                                      -...+||.++|++|||.|||.+.|||+|||+|++|.|||||+|+|||++||......+++++++
T Consensus       321 ----------------~~~~~F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~DfYHTCYcLsGLSiAq~y~~~~~d~~~~~~  384 (423)
T KOG0365|consen  321 ----------------LEHLLFNKEALQEYILLCCQSPSGGLRDKPGKPRDFYHTCYCLSGLSIAQHYSCAPSDSPHNPD  384 (423)
T ss_pred             ----------------hhhhhcCHHHHHHHHHhhccCCCCCccCCCCCCcchhhhhhHhcchhHHhhhccCCCCCCCCCc
Confidence                            1125789999999999999999999999999999999999999999999998777777788888


Q ss_pred             ccccCCcccccccchhHHHhhhhhhhhhhhhccC
Q 013798          403 AVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSRS  436 (436)
Q Consensus       403 ~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~  436 (436)
                      .|+|.+.|.|.|+||+||||.+.+.++++||.++
T Consensus       385 ~ilg~~~n~L~p~~pvyni~~~~~~~a~~yF~s~  418 (423)
T KOG0365|consen  385 RILGSSKNSLLPVHPVYNIPIDSVRKAIEYFLSN  418 (423)
T ss_pred             ccccCchhhcCccCccccCCHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999864

>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query436
1ft1_B437 Crystal Structure Of Protein Farnesyltransferase At 6e-89
1n94_B397 Aryl Tetrahydropyridine Inhbitors Of Farnesyltransf 7e-89
3pz4_B426 Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu 8e-89
2zir_B440 Crystal Structure Of Rat Protein Farnesyltransferas 8e-89
1o1r_B427 Structure Of Fpt Bound To Ggpp Length = 427 8e-89
1jcq_B437 Crystal Structure Of Human Protein Farnesyltransfer 8e-89
1nl4_B401 Crystal Structure Of Rat Farnesyl Transferase In Co 9e-89
1n95_B402 Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf 1e-88
1ft2_B401 Co-Crystal Structure Of Protein Farnesyltransferase 1e-88
2h6h_B437 Y365f Protein Farnesyltransferase Mutant Complexed 2e-88
2h6g_B437 W102t Protein Farnesyltransferase Mutant Complexed 3e-87
2h6i_B437 W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTAN 8e-87
3euv_B427 Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu 2e-86
3q73_B520 Cryptococcus Neoformans Protein Farnesyltransferase 2e-52
1dce_B331 Crystal Structure Of Rab Geranylgeranyltransferase 2e-24
3pz1_B330 Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) 2e-24
1n4p_B377 Protein Geranylgeranyltransferase Type-I Complexed 3e-22
3dra_B390 Candida Albicans Protein Geranylgeranyltransferase- 5e-11
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 437 Back     alignment and structure 
Iteration: 1

 Score =  324 bits (830), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 182/428 (42%), Positives = 234/428 (54%), Gaps = 58/428 (13%)
Query: 10  TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
           TVT  EQ+ V   +  ++  Y     VP +       LQR+ H  YL RGL+QL  ++  
Sbjct: 42  TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95
Query: 67  LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
           LDA+RPW+CYWILHS+ LL E +   +     +FL  CQ P+        Q PHLA TYA
Sbjct: 96  LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYA 155
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
           AVNAL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
           I+  +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++ +   L+L +L+ 
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 275
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSID 305
           WV  RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R     G+    +          
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHW------- 328
Query: 306 NTQTTTAXXXXXXXXXXXXXXXXXXXHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLR 365
                                                +FH  ALQ Y+L+C Q P GGL 
Sbjct: 329 -------------------------------------MFHQQALQEYILMCCQCPAGGLL 351
Query: 366 DKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDR 425
           DK  K RD+YHTCYCLSGLSI QH        + L   V+G   NVL+P HPV+NI  D+
Sbjct: 352 DKPGKSRDFYHTCYCLSGLSIAQHF----GSGAMLHDVVMGVPENVLQPTHPVYNIGPDK 407
Query: 426 YHEAHEFF 433
             +A   F
Sbjct: 408 VIQATTHF 415
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase: Glycine, Phenylalanine And Histidine Derivates Length = 397 Back     alignment and structure
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 426 Back     alignment and structure
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase Complexed With A Benzofuran Inhibitor And Fpp Length = 440 Back     alignment and structure
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp Length = 427 Back     alignment and structure
>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 437 Back     alignment and structure
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 401 Back     alignment and structure
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 402 Back     alignment and structure
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 401 Back     alignment and structure
>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A Farnesylated Ddptasacvls Peptide Product At 1.8a Length = 437 Back     alignment and structure
>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A Geranylgeranylated Ddptasacvls Peptide Product At 1.85a Resolution Length = 437 Back     alignment and structure
>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide Product At 3.0a Length = 437 Back     alignment and structure
>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10, W102t, Y154t) In Complex With Biotingpp Length = 427 Back     alignment and structure
>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo Enzyme Length = 520 Back     alignment and structure
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 331 Back     alignment and structure
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 Length = 330 Back     alignment and structure
>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With Geranylgeranyl Diphosphate Length = 377 Back     alignment and structure
>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I Complexed With Ggpp Length = 390 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query436
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 1e-126
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 1e-118
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 8e-96
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 1e-05
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 3e-82
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 5e-81
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 5e-04
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437 Back     alignment and structure
 Score =  372 bits (955), Expect = e-126
 Identities = 186/427 (43%), Positives = 239/427 (55%), Gaps = 52/427 (12%)

Query: 10  TVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDA 69
           TVT  EQ+ V   +  ++  Y     + +   + LQR+ H  YL RGL+QL  ++  LDA
Sbjct: 42  TVTSIEQAKVEEKIQEVFSSYKFNHLVPR---LVLQREKHFHYLKRGLRQLTDAYECLDA 98

Query: 70  NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVN 129
           +RPW+CYWILHS+ LL E +   +     +FL  CQ P GG+GGGPGQ PHLA TYAAVN
Sbjct: 99  SRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVN 158

Query: 130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD 189
           AL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ NI+ 
Sbjct: 159 ALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIIT 218

Query: 190 DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249
            +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++     L+L +L+ WV 
Sbjct: 219 PDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVT 278

Query: 250 FRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQ 308
            RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R     G+    +             
Sbjct: 279 SRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMS------------ 326

Query: 309 TTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKL 368
                                             +FH  ALQ Y+L+C Q P GGL DK 
Sbjct: 327 --------------------------------HWMFHQQALQEYILMCCQCPAGGLLDKP 354

Query: 369 RKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHE 428
            K RD+YHTCYCLSGLSI QH              VLG   N L+P HPV+NI  D+  +
Sbjct: 355 GKSRDFYHTCYCLSGLSIAQHFGSGAMLHDV----VLGVPENALQPTHPVYNIGPDKVIQ 410

Query: 429 AHEFFSR 435
           A  +F +
Sbjct: 411 ATTYFLQ 417
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520 Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390 Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query436
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 100.0
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 100.0
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 100.0
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 100.0
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 100.0
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 100.0
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 100.0
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 100.0
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 100.0
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 100.0
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.82
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.76
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.75
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.73
2wy7_A310 Complement C3D fragment; immune system, immune res 99.41
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 99.41
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 98.91
2pn5_A1325 TEP1R, thioester-containing protein I; FULL-length 98.77
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 98.75
2wy7_A310 Complement C3D fragment; immune system, immune res 98.65
2hr0_B 915 Complement C3 alpha' chain; complement component C 98.51
4acq_A1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 98.42
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 98.28
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 97.74
3prx_B 1642 Cobra venom factor; immune system, complement, imm 97.55
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 97.48
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 97.48
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 97.48
2hr0_B 915 Complement C3 alpha' chain; complement component C 97.43
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 97.39
2pn5_A1325 TEP1R, thioester-containing protein I; FULL-length 97.39
4fxk_B767 Complement C4-A alpha chain; immune system, proteo 97.36
4acq_A1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 97.11
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 97.01
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 96.98
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 96.89
2pmv_A399 Gastric intrinsic factor; cobalamin transport prot 96.7
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 95.3
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 94.76
2pmv_A399 Gastric intrinsic factor; cobalamin transport prot 94.35
3prx_B 1642 Cobra venom factor; immune system, complement, imm 94.06
4fxk_B767 Complement C4-A alpha chain; immune system, proteo 93.93
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
Probab=100.00  E-value=6e-92  Score=729.08  Aligned_cols=407  Identities=37%  Similarity=0.637  Sum_probs=340.0

Q ss_pred             CCCCCCccccccchhhhHHHHHHHHHHHhcCCC---chhhHHHHHhhhhhHHHHHHhhhhcCCccceecCCCcchhHHHH
Q 013798            3 PDTEPRGTVTQREQSMVLNDVNMLYHIYATVPP---IAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWIL   79 (436)
Q Consensus         3 ~~~~~~~t~ts~~q~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~r~~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l   79 (436)
                      .++|+++|.||++|.+||+.|+++|+.......   .......+|+|++|++||+++|..||.+|+++|++|+|++||++
T Consensus        17 ~~~d~~~T~Ts~~Q~~te~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~~Hi~yl~~~L~~LP~~y~~~Dasr~wl~Yw~l   96 (520)
T 3q7a_B           17 LPSNSRPSATLDEQAETEDLISQLFDLTADPNALVSEHGKRYSGLRKQEHTQFLASSFFQLPGKFVSLDASRPWLVFWTV   96 (520)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHHHHHHHHBCCTTCSSCCTTSBCCCCCHHHHHHHHHHHHSCBCGGGGGGGGGHHHHHHHHH
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHhhhCChhhhhcccchHHHHHHHH
Confidence            578999999999999999999999986321100   00111246999999999999999999999999999999999999


Q ss_pred             HHHHhhcccchhhhhcchhHhhhccCCCCCCCCCCC--CCCchhhHHHHHHHHHHhccCC---Ccccccc--chhHHHHH
Q 013798           80 HSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGP--GQMPHLATTYAAVNALISLGGE---KSLPSIN--RSKVYTFL  152 (436)
Q Consensus        80 ~~L~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~--~~~sh~~~Ty~Al~~L~~Lg~~---~~l~~id--~~~~~~~L  152 (436)
                      ++|+|||..++++.++++|+||++||+++|||++++  ++.+|+.+||+||++|.+++..   ++++.+|  |+++++||
T Consensus        97 ~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL  176 (520)
T 3q7a_B           97 HSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFF  176 (520)
T ss_dssp             HHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHH
T ss_pred             HHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHH
Confidence            999999977888889999999999999999999999  9999999999999999999974   3578899  99999999


Q ss_pred             HhhcCCCCccccccCcccchhhhhhHHHHHHHHhhccHHHhhhccCeeeeeceeccccCC--------------------
Q 013798          153 KCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAG--------------------  212 (436)
Q Consensus       153 ~~~Q~~dGgF~~~~~ge~D~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~~dGGFg~--------------------  212 (436)
                      .++|++||||.++.+|+.|+|+||||++++.+||..+.++++++++||++||++|||||.                    
T Consensus       177 ~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp  256 (520)
T 3q7a_B          177 MRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEP  256 (520)
T ss_dssp             HHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CC
T ss_pred             HHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCcccccccccccccccccccc
Confidence            999999999999888999999999999999999998889999999999999999999999                    


Q ss_pred             ---CCCCccccCcchhhHHHHHhhhccc------cCCcccccceeeeecc---cccccccccccccccchhccchhHHHH
Q 013798          213 ---EPGSEAHGGYTFCGLAAMILINEAD------RLDLDALIGWVVFRQG---VEGGFQGRTNKLVDGCYSFWQGGVFAL  280 (436)
Q Consensus       213 ---~pg~esh~~~TycAlaaL~llg~~~------~~~~~~l~~wL~~rQ~---~~GGF~gr~~k~~D~cYsfw~~~~l~l  280 (436)
                         .|+.|||+++||||||+|++|++++      .+|.+++++||++||.   ++|||+||+||++|+|||||++++|+|
T Consensus       257 ~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~i  336 (520)
T 3q7a_B          257 SCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPV  336 (520)
T ss_dssp             SEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHH
T ss_pred             ccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHH
Confidence               6899999999999999999999963      6789999999999997   469999999999999999999999999


Q ss_pred             HHHHHhhhcCC-CCccccCcccccCCCCcccccccCCCCCCCCCCCCCCCCCccccccccccchhhHHHHHHhhhhhccC
Q 013798          281 LRRFHSIIGES-PTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQD  359 (436)
Q Consensus       281 L~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~  359 (436)
                      |+.+....... .            .   .|.+...-.           ...+-+.+......++|+++|++|||.|||.
T Consensus       337 L~~~~~~~~~~~~------------~---~~~~~~~~~-----------~~~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~  390 (520)
T 3q7a_B          337 AEELVRREKSRKV------------K---KSRIEVFEE-----------EKEGDWEDVPPIPPIFNRVALQEFTLVAAQQ  390 (520)
T ss_dssp             HHHHHHHHHHHHC-----------------------------------------------CCCSSCHHHHHHHHHHTTBC
T ss_pred             HHHHhhccccccc------------c---ccccccccc-----------ccccccccccccccccCHHHHHHHHHHHccC
Confidence            99974321100 0            0   000000000           0000000000112578999999999988899


Q ss_pred             CC---CccCCCCCCCCCcceeeeeccCCchhhccccCC----------CCCC-----------C----------------
Q 013798          360 PR---GGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKD----------EDSS-----------P----------------  399 (436)
Q Consensus       360 ~~---GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~~----------~~~~-----------~----------------  399 (436)
                      +.   |||+|||++.||+|||||+|+|||++||....+          .+.+           +                
T Consensus       391 ~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (520)
T 3q7a_B          391 DPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHKMSHSPSTVSSNRLKFDASKGLPAVKPVAPGGGWKNEDERQNARREI  470 (520)
T ss_dssp             CTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHSCEEECHHHHHHHHHHCCTTCCCCCCCCSSTTCSCSSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCChhhHHHhhhccccccccccccccccccccccchhhHHHHHHH
Confidence            97   999999999999999999999999999865310          0110           0                


Q ss_pred             -----------CccccccCCcccccccchhHHHhhhhhhhhhhhhcc
Q 013798          400 -----------LPRAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR  435 (436)
Q Consensus       400 -----------~~~~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~~  435 (436)
                                 -.+.|+|.+.|.++++||+|||+..++++|++||..
T Consensus       471 ~~~~~~w~~~~~~~~~~g~~~n~~~~~hp~~ni~~~~~~~~~~~f~~  517 (520)
T 3q7a_B          471 WANALGWIEEEGGEIIVGGKDNRINTTTPVFNILGLRLKPFINYFYC  517 (520)
T ss_dssp             HHHHTCEEECTTCCCCTTCGGGCCCCBCTTTCSBHHHHHHHHHHHTT
T ss_pred             HhhhhccccccCCceeecCccccccCCCCcccCCHHHHHHHHHHHhh
Confidence                       013478999999999999999999999999999964
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 436
d2h6fb1401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 1e-140
d3dssb1325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 3e-90
d3dssb1325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 4e-21
d3dssb1325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 2e-05
d1n4qb_346 a.102.4.3 (B:) Protein farnesyltransferase, beta-s 2e-88
d2sqca1352 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla 2e-04
d1w6ka2279 a.102.4.2 (A:100-378) Lanosterol synthase {Human ( 0.004
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  406 bits (1044), Expect = e-140
 Identities = 186/427 (43%), Positives = 240/427 (56%), Gaps = 52/427 (12%)

Query: 10  TVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDA 69
           TVT  EQ+ V   +     ++++         + LQR+ H  YL RGL+QL  ++  LDA
Sbjct: 22  TVTSIEQAKVEEKIQ---EVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECLDA 78

Query: 70  NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVN 129
           +RPW+CYWILHS+ LL E +   +     +FL  CQ P GG+GGGPGQ PHLA TYAAVN
Sbjct: 79  SRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVN 138

Query: 130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD 189
           AL  +G E++   INR K+  +L  +K P G+F MH  GE+DVR+ Y A SVAS+ NI+ 
Sbjct: 139 ALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIIT 198

Query: 190 DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249
            +L +    +I  CQ +EGGI G PG EAHGGYTFCGLAA++++     L+L +L+ WV 
Sbjct: 199 PDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVT 258

Query: 250 FRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQ 308
            RQ   EGGFQGR NKLVDGCYSFWQ G+  LL R     G+    +             
Sbjct: 259 SRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSH----------- 307

Query: 309 TTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKL 368
                                             +FH  ALQ Y+L+C Q P GGL DK 
Sbjct: 308 ---------------------------------WMFHQQALQEYILMCCQCPAGGLLDKP 334

Query: 369 RKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLPRAVLGPYSNVLEPVHPVFNIVLDRYHE 428
            K RD+YHTCYCLSGLSI QH        + L   VLG   N L+P HPV+NI  D+  +
Sbjct: 335 GKSRDFYHTCYCLSGLSIAQHFG----SGAMLHDVVLGVPENALQPTHPVYNIGPDKVIQ 390

Query: 429 AHEFFSR 435
           A  +F +
Sbjct: 391 ATTYFLQ 397
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346 Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352 Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 279 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query436
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 100.0
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 100.0
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 100.0
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 100.0
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 100.0
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 100.0
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.71
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.7
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.65
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.41
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.11
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 98.5
d1w6ka2279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 97.83
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 97.56
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 97.55
d1w6ka2279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 97.19
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 97.09
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 96.88
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 96.84
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 96.51
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 95.85
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 92.23
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-98  Score=757.70  Aligned_cols=382  Identities=49%  Similarity=0.865  Sum_probs=349.2

Q ss_pred             CCCCCCccccccchhhhHHHHHHHHHHHhcCCCchhhHHHHHhhhhhHHHHHHhhhhcCCccceecCCCcchhHHHHHHH
Q 013798            3 PDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSM   82 (436)
Q Consensus         3 ~~~~~~~t~ts~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~h~~yl~~~l~~lp~~~~~~d~~r~~~~yw~l~~L   82 (436)
                      .+||+++|.||++|.+||+.|.++|+.+....   ....+.|.|++|++||+++|+.+|.+|+++|++|+|++||++++|
T Consensus        15 ~~~~~~~t~ts~~q~~~e~~~~~~~~~~~~~~---~~~~~~L~r~~H~~y~~~~L~~lp~~~~~lD~~r~~l~yw~l~~L   91 (401)
T d2h6fb1          15 LQDDSVETVTSIEQAKVEEKIQEVFSSYKFNH---LVPRLVLQREKHFHYLKRGLRQLTDAYECLDASRPWLCYWILHSL   91 (401)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHHHHHHHTTCBTT---BCCCCCCCHHHHHHHHHHHTTEECGGGGGGTTCHHHHHHHHHHHH
T ss_pred             ccCCCCccCCHHHHHHHHHHHHHHHHHhhhhc---CCccccccHHHHHHHHHHHHHhCCHHhhccccccHHHHHHHHHHH
Confidence            57899999999999999999999999775321   112367999999999999999999999999999999999999999


Q ss_pred             HhhcccchhhhhcchhHhhhccCCCCCCCCCCCCCCchhhHHHHHHHHHHhccCCCccccccchhHHHHHHhhcCCCCcc
Q 013798           83 ALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAF  162 (436)
Q Consensus        83 ~lL~~~~~~~~~~~~i~~l~~~q~~dGGF~~~~~~~sh~~~Ty~Al~~L~~Lg~~~~l~~id~~~~~~~L~~~Q~~dGgF  162 (436)
                      +|||.+++++.++++++||.+||+++|||+++|++.||+++||+||++|.++|+++.++.+||+++++||.++|++||||
T Consensus        92 ~LL~~~~~~~~~~~ii~~l~~~q~~~GGF~g~pg~~~hla~Ty~Al~~L~ilg~~~~~~~idR~~i~~fL~slQ~pDGsF  171 (401)
T d2h6fb1          92 ELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSF  171 (401)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCB
T ss_pred             HHcCCCccHHHHHHHHHHHHHHcCCCCCcCCCCCCCcchHHHHHHHHHHHHcCCccccchhhHHHHHHHHHHhcCCCCCc
Confidence            99998888888999999999999999999999999999999999999999999876788999999999999999999999


Q ss_pred             ccccCcccchhhhhhHHHHHHHHhhccHHHhhhccCeeeeeceeccccCCCCCCccccCcchhhHHHHHhhhccccCCcc
Q 013798          163 RMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLD  242 (436)
Q Consensus       163 ~~~~~ge~D~r~tY~a~~~~~LL~~~~~~~~~~~~~yIlscQ~~dGGFg~~pg~esh~~~TycAlaaL~llg~~~~~~~~  242 (436)
                      .++++++.|+|++|||+++++|||..++++++++++||++||++|||||..|+.|||+++||||||+|+++++.+.+|++
T Consensus       172 ~~~~~ge~D~R~~Y~Av~i~~lL~~~~~~~~~~~~~~I~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~lL~~~~~~d~~  251 (401)
T d2h6fb1         172 LMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLK  251 (401)
T ss_dssp             BSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHH
T ss_pred             cccccCCcccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCCccCCCCCCcchhHHHHHHHHHHHhCCCcccCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeeeeccc-ccccccccccccccchhccchhHHHHHHHHHhhhcCCCCccccCcccccCCCCcccccccCCCCCCC
Q 013798          243 ALIGWVVFRQGV-EGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGS  321 (436)
Q Consensus       243 ~l~~wL~~rQ~~-~GGF~gr~~k~~D~cYsfw~~~~l~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  321 (436)
                      ++++||++||.. +|||+||+||++|+|||||++++|.||+..........                            .
T Consensus       252 ~l~~WL~~RQ~~~eGGF~GR~nKlvD~CYSfW~ga~l~lL~~~~~~~~~~~----------------------------~  303 (401)
T d2h6fb1         252 SLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPA----------------------------L  303 (401)
T ss_dssp             HHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTT----------------------------C
T ss_pred             HHHHHHHHcCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHhhcccccc----------------------------c
Confidence            999999999984 89999999999999999999999999999865422110                            0


Q ss_pred             CCCCCCCCCCccccccccccchhhHHHHHHhhhhhccCCCCccCCCCCCCCCcceeeeeccCCchhhccccCCCCCCCCc
Q 013798          322 SDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQDPRGGLRDKLRKPRDYYHTCYCLSGLSICQHSWLKDEDSSPLP  401 (436)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~Q~~~GGf~~~P~k~~D~~hT~~~la~Lsl~~~~~~~~~~~~~~~  401 (436)
                                      ....+++|.++|++|||.|||++.|||+|+|+++||+|||||+|+|||++||.....    ...
T Consensus       304 ----------------~~~~~l~d~~~l~~yiL~~~Q~~~GGf~d~Pg~~pD~yHT~y~L~gLSl~~~~~~~~----~~~  363 (401)
T d2h6fb1         304 ----------------SMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDFYHTCYCLSGLSIAQHFGSGA----MLH  363 (401)
T ss_dssp             ----------------CSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHHEEEETT----EEE
T ss_pred             ----------------cccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHhcCCcCccC----ccc
Confidence                            011257899999999999999999999999999999999999999999999976422    112


Q ss_pred             cccccCCcccccccchhHHHhhhhhhhhhhhhcc
Q 013798          402 RAVLGPYSNVLEPVHPVFNIVLDRYHEAHEFFSR  435 (436)
Q Consensus       402 ~~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~~  435 (436)
                      ..+.+.++|.|.++||+||||.+++++|++||.+
T Consensus       364 ~~~~~~~~~~l~~~~P~~~i~~~~~~~~~~~f~~  397 (401)
T d2h6fb1         364 DVVLGVPENALQPTHPVYNIGPDKVIQATTYFLQ  397 (401)
T ss_dssp             ECCCSSGGGCCCCCCTTTSSCHHHHHHHHHHHHT
T ss_pred             ccccCCcccccccCCCcccCCHHHHHHHHHHHHh
Confidence            3467788999999999999999999999999986
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure