Citrus Sinensis ID: 013803

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430------
Protein Sequence
MTNRFTSSAVEGGNGVGLTRQLDHPGPPSGINLHSVSALDIEESLLDLRREGRGRHLGRNKRRENGPGYSQGGDDVDDFGEDLVDSLLPDDESELKNDNHERNDKKHRNSRDKEIRSDNRGKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQASRLARGPSMNSSSRRAPMDFGPRGLSLGTPIFNIIYYLCLVVLIWWWVQV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccEEEEccccccccccHHHHccccccccccccccccccHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtnrftssaveggngvgltrqldhpgppsginlhsvsALDIEESLLDLRREgrgrhlgrnkrrengpgysqggddvddfGEDLvdsllpddeselkndnherndkkhrnsrdkeirsdnrgkRRLSKRMRNLKWHIecrgdigrlnapnFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLagelpdfsedneKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLgqyenpdeeDVEALCILMSTIGemidhpkakeHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRrkvegpkkIEEVHRDAAQERQAQASRlargpsmnsssrrapmdfgprglslgtpiFNIIYYLCLVVLIWWWVQV
Flexible Loop (DISEMBL)
mtnrftssaveggnGVGLTRQLDHPGPPSGINLHSVSALDIEESLLDLRregrgrhlgrnkrrengpgysqggddvDDFGEDLVDSLlpddeselkndnherndkkhrnsrdkeirsdnrgkrrlskrmrnlkwhiecrgdigrlnaPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKCQEEFErgereqeeankadkegeikqteeereekrikarrrwlgnirligelykkkmlteRIMHECIKKLlgqyenpdEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSielrknkwqqrrkvegpkkieEVHRDAAQERQAqasrlargpsmnsssrrapmdfgpRGLSLGTPIFNIIYYLCLVVLIWWWVQV
Low Complexity Region (SEG)
MTNRFTSSAVEGGNGVGLTRQLDHPGPPSGINLHSVSALDIeeslldlrregrgrhlgrNKRRENGPGYSQggddvddfgedlvdSLLPDDESELKNDNHERNDKKHRNSRDKEIRSDNRGKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKCqeefergereqeeANKADkegeikqteeereekrikarrrWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQASRLARGPSMNSSSRRAPMDFGPRGLSLGTPIFNIIYYLCLVVLIWWWVQV
Disordered region (IsUnstruct)
**********************************************************************************************************************************NLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKC************************************ARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDH*********Y**********************************************************************************GLSLGTPIFNIIYYLCLVVLIWWWV**
Disordered Region (DISOPRED)
****************************************************************************************************************************************ECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGEL*********ITFKRLLLNKCQEEFERGER*******************EREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSN**KLSSRVRLMLKDSIELRKNKW*****************************************************************CLVVLIWWWVQV
Disordered Region (DISEMBL)
***********GGNGVGLTRQLDHPGPPSGINLHSVSALDIEESLLDLRREGRGRHLGRNKRRENGPGYSQGGDDVDDFGEDLVDSLLPDDE*****************************KRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKCQEE********************************KARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKN*******************************************RAPMDFGPRGLSLGTPIFNIIYYLCLVVLIWWWVQV
Disordered Region (DISPRO)
*****************LTRQLDHPGPPSGIN*HSVSALDIEESLLDLRR*******************************DLVDS*LPDDESELKNDN*************************LSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQER****************************LSLGTPIFNIIYYLCLVVLIWWWVQV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTNRFTSSAVEGGNGVGLTRQLDHPGPPSGINLHSVSALDIEESLLDLRREGRGRHLGRNKRRENGPGYSQGGDDVDDFGEDLVDSLLPDDESELKNDNHERNDKKHRNSRDKEIRSDNRGKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQERQAQASRLARGPSMNSSSRRAPMDFGPRGLSLGTPIFNIIYYLCLVVLIWWWVQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	436	2.2.26 [Sep-21-2011]
G5CEW6	1488	Eukaryotic translation in	N/A	no	0.626	0.183	0.775	1e-115
B9FXV5	1792	Eukaryotic translation in	no	no	0.616	0.150	0.800	1e-114
Q76E23	1727	Eukaryotic translation in	yes	no	0.616	0.155	0.725	3e-98
Q6NZJ6	1600	Eukaryotic translation in	yes	no	0.623	0.17	0.403	1e-51
Q04637	1599	Eukaryotic translation in	yes	no	0.623	0.170	0.406	2e-51
Q80XI3	1579	Eukaryotic translation in	no	no	0.555	0.153	0.438	3e-51
O43432	1585	Eukaryotic translation in	no	no	0.557	0.153	0.433	1e-50
Q6K641	780	Eukaryotic translation in	no	no	0.566	0.316	0.419	7e-48
Q84PB3	793	Eukaryotic translation in	no	no	0.626	0.344	0.384	3e-44
O82233	747	Eukaryotic translation in	no	no	0.543	0.317	0.396	3e-42

>sp|G5CEW6|IF4G_WHEAT Eukaryotic translation initiation factor 4G OS=Triticum aestivum PE=1 SV=1

 Score =  417 bits (1071), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/276 (77%), Positives = 241/276 (87%), Gaps = 3/276 (1%)

Query: 137  ECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFL 196
            + +  + +L   NF KLFEQVK VNIDN  TL GV+SQIFDKALMEPTFCEMYANF   L
Sbjct: 885  QLKAILNKLTPQNFDKLFEQVKEVNIDNVSTLTGVISQIFDKALMEPTFCEMYANFCSHL 944

Query: 197  AGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIK 256
            AG LPDFSEDNEKITFKRLLLNKCQEEFERGERE+ EA+K ++EGEIKQT+EEREEKR+K
Sbjct: 945  AGALPDFSEDNEKITFKRLLLNKCQEEFERGEREEAEADKTEEEGEIKQTKEEREEKRVK 1004

Query: 257  ARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMID 316
            ARRR LGNIRLIGELYKK+MLTERIMHECIKKLLG Y+NPDEE++EALC LMSTIGEMID
Sbjct: 1005 ARRRMLGNIRLIGELYKKRMLTERIMHECIKKLLGNYQNPDEENIEALCKLMSTIGEMID 1064

Query: 317  HPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHR 376
            HPKAKEHMDAYFDRM  LS +  +SSRVR +L+DSI+LRKNKWQQRRKV+GPKKI+EVHR
Sbjct: 1065 HPKAKEHMDAYFDRMRNLSTSQLISSRVRFLLRDSIDLRKNKWQQRRKVDGPKKIDEVHR 1124

Query: 377  DAAQERQAQASRLARGPSMNSSSRR-AP-MDFGPRG 410
            DAAQER AQ+SR +RGP ++S  RR AP MD+G RG
Sbjct: 1125 DAAQERHAQSSR-SRGPVVSSLPRRGAPSMDYGSRG 1159

Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome.
Triticum aestivum (taxid: 4565)

>sp|B9FXV5|IF4G_ORYSJ Eukaryotic translation initiation factor 4G OS=Oryza sativa subsp. japonica GN=Os07g0555200 PE=2 SV=2

 Score =  412 bits (1060), Expect = e-114,   Method: Composition-based stats.
 Identities = 217/271 (80%), Positives = 241/271 (88%), Gaps = 2/271 (0%)

Query: 142  IGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELP 201
            + +L   NF+KLFE+VK VNIDN  TL GV+SQIFDKALMEPTFCEMYANF + LAG LP
Sbjct: 1190 LNKLTPQNFEKLFEKVKEVNIDNVATLTGVISQIFDKALMEPTFCEMYANFCFHLAGALP 1249

Query: 202  DFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRW 261
            DFSEDNEKITFKRLLLNKCQEEFERGERE+ EA+K ++EGEIKQT+EEREEKRI+ARRR 
Sbjct: 1250 DFSEDNEKITFKRLLLNKCQEEFERGEREEAEADKTEEEGEIKQTKEEREEKRIRARRRM 1309

Query: 262  LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 321
            LGNIRLIGELYKK+MLTERIMHECIKKLLG Y+NPDEE++EALC LMSTIGEMIDH KAK
Sbjct: 1310 LGNIRLIGELYKKRMLTERIMHECIKKLLGNYQNPDEENIEALCKLMSTIGEMIDHAKAK 1369

Query: 322  EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 381
            EHMDAYFD M KLS + +LSSRVR ML+DSI+LRKNKWQQRRKVEGPKKI+EVHRDAAQE
Sbjct: 1370 EHMDAYFDIMLKLSTSQQLSSRVRFMLRDSIDLRKNKWQQRRKVEGPKKIDEVHRDAAQE 1429

Query: 382  RQAQASRLARGPSMNSSSRR--APMDFGPRG 410
            R AQ+SRLARG  + S  RR  APMD+GPRG
Sbjct: 1430 RHAQSSRLARGSVVGSGPRRGAAPMDYGPRG 1460

Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q76E23|IF4G_ARATH Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=2

 Score =  359 bits (921), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 196/270 (72%), Positives = 235/270 (87%), Gaps = 1/270 (0%)

Query: 142  IGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELP 201
            + +L   NF+KLFEQVK+VNIDNAVTL+GV+SQIFDKALMEPTFCEMYA+F + L+G LP
Sbjct: 1103 LNKLTPQNFEKLFEQVKSVNIDNAVTLSGVISQIFDKALMEPTFCEMYADFCFHLSGALP 1162

Query: 202  DFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRW 261
            DF+E+ EKITFKRLLLNKCQEEFERGE+E+EEA++  +EG+++QTEEEREEKR++ RRR 
Sbjct: 1163 DFNENGEKITFKRLLLNKCQEEFERGEKEEEEASRVAEEGQVEQTEEEREEKRLQVRRRM 1222

Query: 262  LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 321
            LGNIRLIGELYKK+MLTE+IMH CI+KLLG  ++P EE++EALC LMSTIG MIDH KAK
Sbjct: 1223 LGNIRLIGELYKKRMLTEKIMHACIQKLLGYNQDPHEENIEALCKLMSTIGVMIDHNKAK 1282

Query: 322  EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 381
              MD YF++M+ LS   +LSSRVR ML ++I+LRKNKWQ+R KVEGPKKIEEVHRDAAQE
Sbjct: 1283 FQMDGYFEKMKMLSCKQELSSRVRFMLINAIDLRKNKWQERMKVEGPKKIEEVHRDAAQE 1342

Query: 382  RQAQASRLARGPSMNSSSRRAPMDF-GPRG 410
            RQ QA+RL+RGPSMNSS RR  M+F  PRG
Sbjct: 1343 RQTQANRLSRGPSMNSSGRRGHMEFSSPRG 1372

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NZJ6|IF4G1_MOUSE Eukaryotic translation initiation factor 4 gamma 1 OS=Mus musculus GN=Eif4g1 PE=1 SV=1

 Score =  204 bits (519), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 119/295 (40%), Positives = 177/295 (60%), Gaps = 23/295 (7%)

Query: 138  CRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFF-YFL 196
             R  + +L    F++L +QV  + ID    L GV+  IF+KA+ EP F   YAN     +
Sbjct: 768  VRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMCRCLM 827

Query: 197  AGELPDFSEDNEKITFKRLLLNKCQEEFERG----------EREQEEANKADKEGEIKQT 246
            A ++P   +    + F++LLLN+CQ+EFE+           ++E +EA  A++ G +K  
Sbjct: 828  ALKVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAEERGRLK-- 885

Query: 247  EEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCI 306
             EE EE R  ARRR LGNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC 
Sbjct: 886  -EELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCR 941

Query: 307  LMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVE 366
            L++TIG+ +D  KAK  MD YF++MEK+    K SSR+R ML+D ++LR++ W  RR  +
Sbjct: 942  LLTTIGKDLDFAKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRQSNWVPRRGDQ 1001

Query: 367  GPKKIEEVHRDAAQERQAQASRLARGPSMNSSSRRAPMDFGPRGLSL--GTPIFN 419
            GPK I+++H++A  E   +  ++ +  +  S  RR     GP G  +  G P+ +
Sbjct: 1002 GPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRG----GPPGPPINRGLPLVD 1052

Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome.

Mus musculus (taxid: 10090)

>sp|Q04637|IF4G1_HUMAN Eukaryotic translation initiation factor 4 gamma 1 OS=Homo sapiens GN=EIF4G1 PE=1 SV=4

 Score =  203 bits (517), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 120/295 (40%), Positives = 177/295 (60%), Gaps = 23/295 (7%)

Query: 138  CRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFF-YFL 196
             R  + +L    F++L +QV  + ID    L GV+  IF+KA+ EP F   YAN     +
Sbjct: 764  VRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIFEKAISEPNFSVAYANMCRCLM 823

Query: 197  AGELPDFSEDNEKITFKRLLLNKCQEEFERG----------EREQEEANKADKEGEIKQT 246
            A ++P   +    + F++LLLN+CQ+EFE+           ++E +EA  A++ G +K  
Sbjct: 824  ALKVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEVFEKKQKEMDEAATAEERGRLK-- 881

Query: 247  EEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCI 306
             EE EE R  ARRR LGNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC 
Sbjct: 882  -EELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCR 937

Query: 307  LMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVE 366
            L++TIG+ +D  KAK  MD YF++MEK+    K SSR+R ML+D ++LR + W  RR  +
Sbjct: 938  LLTTIGKDLDFEKAKPRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRGSNWVPRRGDQ 997

Query: 367  GPKKIEEVHRDAAQERQAQASRLARGPSMNSSSRRAPMDFGPRG--LSLGTPIFN 419
            GPK I+++H++A  E   +  ++ +  +  S  RR     GP G  +S G P+ +
Sbjct: 998  GPKTIDQIHKEAEMEEHREHIKVQQLMAKGSDKRRG----GPPGPPISRGLPLVD 1048

Component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome.

Homo sapiens (taxid: 9606)

>sp|Q80XI3|IF4G3_MOUSE Eukaryotic translation initiation factor 4 gamma 3 OS=Mus musculus GN=Eif4g3 PE=1 SV=2

 Score =  202 bits (515), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 111/253 (43%), Positives = 157/253 (62%), Gaps = 11/253 (4%)

Query: 139  RGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAG 198
            R  + +L    F +L +QV A+ +D    L GV+  +F+KA+ EP+F   YAN    L  
Sbjct: 754  RSILNKLTPQMFNQLMKQVSALTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVT 813

Query: 199  -ELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEER------- 250
             ++P   +    + F++LLLN+CQ+EFE+ + + +   K  KE E     EER       
Sbjct: 814  LKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDEL 873

Query: 251  EEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMST 310
            EE + KARRR +GNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++T
Sbjct: 874  EEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTT 930

Query: 311  IGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKK 370
            IG+ +D  KAK  MD YF++MEK+    K SSR+R ML+D I+LR   W  RR  +GPK 
Sbjct: 931  IGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKT 990

Query: 371  IEEVHRDAAQERQ 383
            IE++H++A  E Q
Sbjct: 991  IEQIHKEAKIEEQ 1003

Probable component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome. Thought to be a functional homolog of EIF4G1.

Mus musculus (taxid: 10090)

>sp|O43432|IF4G3_HUMAN Eukaryotic translation initiation factor 4 gamma 3 OS=Homo sapiens GN=EIF4G3 PE=1 SV=2

 Score =  201 bits (510), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 110/254 (43%), Positives = 156/254 (61%), Gaps = 11/254 (4%)

Query: 138  CRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLA 197
             R  + +L    F +L +QV  + +D    L GV+  +F+KA+ EP+F   YAN    L 
Sbjct: 758  VRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLV 817

Query: 198  G-ELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEER------ 250
              ++P   +    + F++LLLN+CQ+EFE+ + + +   K  KE E     EER      
Sbjct: 818  TLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDE 877

Query: 251  -EEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMS 309
             EE + KARRR +GNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++
Sbjct: 878  LEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLT 934

Query: 310  TIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPK 369
            TIG+ +D  KAK  MD YF++MEK+    K SSR+R ML+D I+LR   W  RR  +GPK
Sbjct: 935  TIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPK 994

Query: 370  KIEEVHRDAAQERQ 383
             IE++H++A  E Q
Sbjct: 995  TIEQIHKEAKIEEQ 1008

Probable component of the protein complex eIF4F, which is involved in the recognition of the mRNA cap, ATP-dependent unwinding of 5'-terminal secondary structure and recruitment of mRNA to the ribosome. Thought to be a functional homolog of EIF4G1.

Homo sapiens (taxid: 9606)

>sp|Q6K641|IF4G2_ORYSJ Eukaryotic translation initiation factor isoform 4G-2 OS=Oryza sativa subsp. japonica GN=Os02g0611500 PE=2 SV=1

 Score =  191 bits (486), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 109/260 (41%), Positives = 162/260 (62%), Gaps = 13/260 (5%)

Query: 125 LSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPT 184
           LS + R LK     +G + +L    F  L  Q+    I  A  L  V+S IF+KA++EPT
Sbjct: 201 LSNKERVLK---TVKGILNKLTPEKFDLLKGQLIEAGITTADILKDVISLIFEKAVLEPT 257

Query: 185 FCEMYANFFYFLAGELPDFSED---NEKITFKRLLLNKCQEEFERGEREQEEANKADKEG 241
           FC MYA   + L  +LP F  +    ++ITFKR+LLN CQE FE  +  + E NK     
Sbjct: 258 FCPMYAQLCFDLNEKLPSFPSEEPGGKEITFKRVLLNNCQEAFEGADNLRSEVNKLTG-- 315

Query: 242 EIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYEN--PDEE 299
            + Q  E R+++R+  + R LGNIRL+GEL K+KM+ E+I+H  +++LLG   N  P EE
Sbjct: 316 -LDQEMERRDKERL-VKLRTLGNIRLVGELLKQKMVPEKIVHHIVQELLGSESNRCPAEE 373

Query: 300 DVEALCILMSTIGEMID-HPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNK 358
           +VEA+C   +TIG+ +D +PK++   D YF+R++ L+ N +L+SR+R M +D ++LR N+
Sbjct: 374 NVEAICQFFNTIGKQLDENPKSRRFNDVYFNRLKDLTTNSQLASRLRFMARDVLDLRSNQ 433

Query: 359 WQQRRKVEGPKKIEEVHRDA 378
           W  RR+    KKI E+HR+A
Sbjct: 434 WVPRREEMKAKKISEIHREA 453

Plays a role in the accumulation of a sobemovirus (RYMV) during viral infection.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84PB3|IF4G1_ORYSJ Eukaryotic translation initiation factor isoform 4G-1 OS=Oryza sativa subsp. japonica GN=Os04g0499300 PE=2 SV=2

 Score =  179 bits (455), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/291 (38%), Positives = 167/291 (57%), Gaps = 18/291 (6%)

Query: 99  NHERNDKKHRNSRDKEIRSDNRGKRR---LSKRMRNLKWHIECRGDIGRLNAPNFKKLFE 155
           NH+   K         I+++     R   LS++ R LK     +G + +L    F  L  
Sbjct: 172 NHQFASKAQVGPTPALIKAEVPWSARRGNLSEKDRVLK---TVKGILNKLTPEKFDLLKG 228

Query: 156 QVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSED---NEKITF 212
           Q+    I  A  L  V+S IF+KA+ EPTFC MYA     L  +LP F  +    ++ITF
Sbjct: 229 QLMESGITTADILKDVISLIFEKAVFEPTFCPMYAQLCSDLNEKLPSFPSEEPGGKEITF 288

Query: 213 KRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELY 272
           KR+LLN CQE FE  E  + E  K        Q  E R+++RI  + R LGNIRLIGEL 
Sbjct: 289 KRVLLNNCQEAFEGAESLRAEIAKLTGP---DQEMERRDKERI-VKLRTLGNIRLIGELL 344

Query: 273 KKKMLTERIMHECIKKLLGQYEN----PDEEDVEALCILMSTIGEMID-HPKAKEHMDAY 327
           K+KM+ E+I+H  +++LLG   +    P+EE+VEA+C   +TIG+ +D +PK++   D Y
Sbjct: 345 KQKMVPEKIVHHIVQELLGSGPDKKACPEEENVEAICQFFNTIGKQLDENPKSRRINDTY 404

Query: 328 FDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDA 378
           F +M++L+ N++L+ R+R M++D ++LR N W  RR+    K I E+H +A
Sbjct: 405 FIQMKELTTNLQLAPRLRFMVRDVVDLRSNNWVPRREEIKAKTISEIHDEA 455

Plays a role in the accumulation of a sobemovirus (RYMV) during viral infection.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82233|IF4G2_ARATH Eukaryotic translation initiation factor isoform 4G-2 OS=Arabidopsis thaliana GN=EIF(ISO)4G2 PE=1 SV=1

 Score =  173 bits (438), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/247 (39%), Positives = 150/247 (60%), Gaps = 10/247 (4%)

Query: 138 CRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLA 197
            +G + +L    ++ L  Q+    I +A  L  V+  IF+ A+++PTFCEMYA   + + 
Sbjct: 178 VKGILNKLTPEKYELLKGQLIDAGITSADILKEVIQLIFENAILQPTFCEMYALLCFDIN 237

Query: 198 GELPDFSED---NEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKR 254
           G+LP F  +    ++ITFKR+LLN CQE FE   + +EE  +     +    E ER +K 
Sbjct: 238 GQLPSFPSEEPGGKEITFKRVLLNNCQEAFEGAGKLKEEIRQMTNPDQ----EMERMDKE 293

Query: 255 IKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLG--QYENPDEEDVEALCILMSTIG 312
             A+ R LGNIRLIGEL K+KM+ E+I+H  +++LLG      P E DVEALC    TIG
Sbjct: 294 KMAKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGDDTKACPAEGDVEALCQFFITIG 353

Query: 313 EMID-HPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKI 371
           + +D  P+++   D YF R+++L+ + +L  R+R M+++ ++LR NKW  RR+    KKI
Sbjct: 354 KQLDDSPRSRGINDTYFGRLKELARHPQLELRLRFMVQNVVDLRANKWVPRREEVKAKKI 413

Query: 372 EEVHRDA 378
            E+H +A
Sbjct: 414 NEIHSEA 420

Plays a role in the accumulation of some potyvirus during viral infection.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	436
255571077	1753	eukaryotic translation initiation factor	0.628	0.156	0.854	1e-134
224136374	1166	predicted protein [Populus trichocarpa]	0.635	0.237	0.830	1e-133
118488070	670	unknown [Populus trichocarpa]	0.635	0.413	0.830	1e-132
309296911	1899	eukaryotic translation initiation factor	0.635	0.145	0.826	1e-131
359489318	1935	PREDICTED: eukaryotic translation initia	0.623	0.140	0.864	1e-129
224067564	797	predicted protein [Populus trichocarpa]	0.635	0.347	0.833	1e-129
449495991	1887	PREDICTED: LOW QUALITY PROTEIN: eukaryot	0.630	0.145	0.815	1e-129
147832292	1778	hypothetical protein VITISV_043311 [Viti	0.610	0.149	0.864	1e-126
356527260	1847	PREDICTED: eukaryotic translation initia	0.637	0.150	0.796	1e-124
356503216	1668	PREDICTED: eukaryotic translation initia	0.628	0.164	0.829	1e-123

>gi|255571077|ref|XP_002526489.1| eukaryotic translation initiation factor 4g, putative [Ricinus communis] gi|223534164|gb|EEF35880.1| eukaryotic translation initiation factor 4g, putative [Ricinus communis]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 234/274 (85%), Positives = 252/274 (91%)

Query: 137  ECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFL 196
            + +  + +L   NF+KLFEQVKAVNIDNAVTL GV+SQIFDKALMEPTFCEMYANF + L
Sbjct: 1115 QLKAILNKLTPQNFEKLFEQVKAVNIDNAVTLTGVISQIFDKALMEPTFCEMYANFCHHL 1174

Query: 197  AGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIK 256
            AGELPDF+EDNEKITFKRLLLNKCQEEFERGEREQEEANKAD+EGE KQ+EEEREEKR K
Sbjct: 1175 AGELPDFTEDNEKITFKRLLLNKCQEEFERGEREQEEANKADEEGETKQSEEEREEKRTK 1234

Query: 257  ARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMID 316
            ARRR LGNIRLIGELYKKKMLTERIMHECIKKLLGQY+NPDEEDVEALC LMSTIGEMID
Sbjct: 1235 ARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQYQNPDEEDVEALCKLMSTIGEMID 1294

Query: 317  HPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHR 376
            HPKAKEHMDAYFDRM KLSNNMKLSSRVR MLKD+I+LR+NKWQQRRKVEGPKKI+EVHR
Sbjct: 1295 HPKAKEHMDAYFDRMAKLSNNMKLSSRVRFMLKDAIDLRRNKWQQRRKVEGPKKIDEVHR 1354

Query: 377  DAAQERQAQASRLARGPSMNSSSRRAPMDFGPRG 410
            DAAQER  Q+SRL+R P +N S RRAPMDFGPRG
Sbjct: 1355 DAAQERHHQSSRLSRNPVINPSPRRAPMDFGPRG 1388

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136374|ref|XP_002326844.1| predicted protein [Populus trichocarpa] gi|222835159|gb|EEE73594.1| predicted protein [Populus trichocarpa]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/277 (83%), Positives = 252/277 (90%)

Query: 137 ECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFL 196
           + +G + +L   NF+KLFEQVKAVNIDNAVTL GV+SQIFDKALMEPTFCEMYANF + L
Sbjct: 519 QLKGILNKLTPQNFEKLFEQVKAVNIDNAVTLNGVISQIFDKALMEPTFCEMYANFCFHL 578

Query: 197 AGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIK 256
           A ELP+  ED+EK+TFKRLLLNKCQEEFERGEREQEEANKAD+EGEIK+++EEREE+RIK
Sbjct: 579 AAELPELIEDDEKVTFKRLLLNKCQEEFERGEREQEEANKADEEGEIKKSDEEREEQRIK 638

Query: 257 ARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMID 316
           ARRR LGNIRLIGELYKK+MLTERIMHECIKKLLGQY+NPDEEDVE+LC LMSTIGEMID
Sbjct: 639 ARRRMLGNIRLIGELYKKRMLTERIMHECIKKLLGQYQNPDEEDVESLCKLMSTIGEMID 698

Query: 317 HPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHR 376
           HPKAK HMDAYFD M KLSNNMKLSSRVR MLKD+I+LRKNKWQQRRKVEGPKKIEEVHR
Sbjct: 699 HPKAKVHMDAYFDMMAKLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHR 758

Query: 377 DAAQERQAQASRLARGPSMNSSSRRAPMDFGPRGLSL 413
           DAAQERQ Q SRLAR P MNSS RR PMDFGPRG ++
Sbjct: 759 DAAQERQLQTSRLARNPGMNSSPRRGPMDFGPRGSTM 795

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488070|gb|ABK95855.1| unknown [Populus trichocarpa]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/277 (83%), Positives = 252/277 (90%)

Query: 137 ECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFL 196
           + +G + +L   NF+KLFEQVKAVNIDNAVTL GV+SQIFDKALMEPTFCEMYANF + L
Sbjct: 23  QLKGILNKLTPQNFEKLFEQVKAVNIDNAVTLNGVISQIFDKALMEPTFCEMYANFCFHL 82

Query: 197 AGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIK 256
           A ELP+  ED+EK+TFKRLLLNKCQEEFERGEREQEEANKAD+EGEIK+++EEREE+RIK
Sbjct: 83  AAELPELIEDDEKVTFKRLLLNKCQEEFERGEREQEEANKADEEGEIKKSDEEREEQRIK 142

Query: 257 ARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMID 316
           ARRR LGNIRLIGELYKK+MLTERIMHECIKKLLGQY+NPDEEDVE+LC LMSTIGEMID
Sbjct: 143 ARRRMLGNIRLIGELYKKRMLTERIMHECIKKLLGQYQNPDEEDVESLCKLMSTIGEMID 202

Query: 317 HPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHR 376
           HPKAK HMDAYFD M KLSNNMKLSSRVR MLKD+I+LRKNKWQQRRKVEGPKKIEEVHR
Sbjct: 203 HPKAKVHMDAYFDMMAKLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHR 262

Query: 377 DAAQERQAQASRLARGPSMNSSSRRAPMDFGPRGLSL 413
           DAAQERQ Q SRLAR P MNSS RR PMDFGPRG ++
Sbjct: 263 DAAQERQLQTSRLARNPGMNSSPRRGPMDFGPRGSTM 299

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|309296911|gb|ADO64263.1| eukaryotic translation initiation factor 4G [Carica papaya]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/277 (82%), Positives = 249/277 (89%)

Query: 137  ECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFL 196
            + +  + +L   NF KLFEQVKAVNIDN VTL GV+SQIFDKALMEPTFCEMYANF Y L
Sbjct: 1253 QLKAILNKLTPQNFDKLFEQVKAVNIDNTVTLTGVISQIFDKALMEPTFCEMYANFCYHL 1312

Query: 197  AGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIK 256
            A  LPDFSE+NEKITFKRLLLNKCQEEFERGEREQEEANK ++EGE+KQ+EEEREEKRIK
Sbjct: 1313 AAVLPDFSEENEKITFKRLLLNKCQEEFERGEREQEEANKVEEEGEVKQSEEEREEKRIK 1372

Query: 257  ARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMID 316
            ARRR LGNIRLIGELYKKKMLTERIMH CI KLLGQY+NPDEED+EALC LMSTIGE+ID
Sbjct: 1373 ARRRMLGNIRLIGELYKKKMLTERIMHSCINKLLGQYQNPDEEDIEALCKLMSTIGEIID 1432

Query: 317  HPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHR 376
            HP AKEHMDAYFDRM KLSNNMKLSSRVR MLKD+I+LRKNKWQQRRKVEGPKKIEEVHR
Sbjct: 1433 HPLAKEHMDAYFDRMTKLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHR 1492

Query: 377  DAAQERQAQASRLARGPSMNSSSRRAPMDFGPRGLSL 413
            DAAQERQ QASRL RGP +N S+RRAPM+F PRG ++
Sbjct: 1493 DAAQERQTQASRLTRGPGINPSARRAPMEFSPRGSTM 1529

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489318|ref|XP_002269466.2| PREDICTED: eukaryotic translation initiation factor 4G-like [Vitis vinifera]

 Score =  469 bits (1207), Expect = e-129,   Method: Composition-based stats.
 Identities = 237/274 (86%), Positives = 255/274 (93%), Gaps = 2/274 (0%)

Query: 142  IGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELP 201
            + +L   NF+KLFEQVKAVNIDNA TL  V+SQIFDKALMEPTFCEMYANF + LA ELP
Sbjct: 1289 LNKLTPQNFEKLFEQVKAVNIDNADTLTRVISQIFDKALMEPTFCEMYANFCFHLARELP 1348

Query: 202  DFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRW 261
            DFSEDNEKITFKRLLLNKCQEEFERGEREQEEAN+AD+EGEIKQ+EEEREEKRIKARRR 
Sbjct: 1349 DFSEDNEKITFKRLLLNKCQEEFERGEREQEEANRADEEGEIKQSEEEREEKRIKARRRM 1408

Query: 262  LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 321
            LGNIRLIGELYKK+MLTERIMHECIKKLLGQY+NPDEED+E+LC LMSTIGEMIDHPKAK
Sbjct: 1409 LGNIRLIGELYKKRMLTERIMHECIKKLLGQYQNPDEEDIESLCKLMSTIGEMIDHPKAK 1468

Query: 322  EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 381
            EHMD YFDRM KLSNNMKLSSRVR MLKD+I+LRKNKWQQRRKVEGPKKIEEVHRDAAQE
Sbjct: 1469 EHMDVYFDRMAKLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHRDAAQE 1528

Query: 382  RQAQASRLARGPSMNSSSRRA--PMDFGPRGLSL 413
            RQAQASRL+RGPSMNSS+RR   PMDFGPRG ++
Sbjct: 1529 RQAQASRLSRGPSMNSSTRRGAPPMDFGPRGSTM 1562

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067564|ref|XP_002302506.1| predicted protein [Populus trichocarpa] gi|222844232|gb|EEE81779.1| predicted protein [Populus trichocarpa]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/277 (83%), Positives = 251/277 (90%)

Query: 137 ECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFL 196
           + +G + +L   NF+KLFEQVKAVNIDN VTL GV+SQIFDKALMEPTFCEMYANF + L
Sbjct: 306 QLKGILNKLTPQNFEKLFEQVKAVNIDNVVTLNGVISQIFDKALMEPTFCEMYANFCFHL 365

Query: 197 AGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIK 256
           A ELP+ +EDNEK+TFKR+LLNKCQEEFERGEREQEEANKAD+EGEIKQ+EEEREEKRIK
Sbjct: 366 AAELPELTEDNEKVTFKRILLNKCQEEFERGEREQEEANKADEEGEIKQSEEEREEKRIK 425

Query: 257 ARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMID 316
           ARRR LGNIRLIGELYKK+MLTERIMHECIKKLLGQY+NPDEED+EALC LMSTIGEMID
Sbjct: 426 ARRRMLGNIRLIGELYKKRMLTERIMHECIKKLLGQYQNPDEEDLEALCKLMSTIGEMID 485

Query: 317 HPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHR 376
           HPKAKEHMD YFD M KLSNNMKLSSRVR MLKDSI+LRKNKWQQRRKVEGPKKIEEVHR
Sbjct: 486 HPKAKEHMDVYFDMMAKLSNNMKLSSRVRFMLKDSIDLRKNKWQQRRKVEGPKKIEEVHR 545

Query: 377 DAAQERQAQASRLARGPSMNSSSRRAPMDFGPRGLSL 413
           DAAQERQ Q SRLAR P +N S RR PMDFGPRG ++
Sbjct: 546 DAAQERQLQTSRLARNPGINPSPRRGPMDFGPRGSTM 582

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495991|ref|XP_004160005.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4G-like [Cucumis sativus]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/277 (81%), Positives = 250/277 (90%), Gaps = 2/277 (0%)

Query: 142  IGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELP 201
            + +L   NF+KLFEQVKAVNIDN  TL GV+SQIFDKALMEPTFCEMYANF + LAGELP
Sbjct: 1245 LNKLTPQNFEKLFEQVKAVNIDNGRTLTGVISQIFDKALMEPTFCEMYANFCFHLAGELP 1304

Query: 202  DFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRW 261
            D SEDNEKITFKRLLLNKCQEEFERGEREQEEANK ++EGE+KQ+EEEREEKR+KARRR 
Sbjct: 1305 DLSEDNEKITFKRLLLNKCQEEFERGEREQEEANKVEEEGEVKQSEEEREEKRVKARRRM 1364

Query: 262  LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 321
            LGNIRLIGELYKKKMLTERIMHECIKKLLG+Y+NPDEEDVEALC LMSTIGEMIDHP+AK
Sbjct: 1365 LGNIRLIGELYKKKMLTERIMHECIKKLLGEYQNPDEEDVEALCKLMSTIGEMIDHPRAK 1424

Query: 322  EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 381
            ++MD+YF+ M  LSNNMKLSSRVR MLKD+I+LRKNKWQQRRKVEGPKKIEEVHRDAAQE
Sbjct: 1425 DYMDSYFEIMTMLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHRDAAQE 1484

Query: 382  RQAQASRLARGPSMNSSSRRA--PMDFGPRGLSLGTP 416
            RQAQ  R  RGPS+NSS+RR   PMD+GPRG  + +P
Sbjct: 1485 RQAQTGRFGRGPSINSSARRGGPPMDYGPRGSVVSSP 1521

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832292|emb|CAN77792.1| hypothetical protein VITISV_043311 [Vitis vinifera]

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 230/266 (86%), Positives = 247/266 (92%)

Query: 142  IGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELP 201
            + +L   NF+KLFEQVKAVNIDNA TL  V+SQIFDKALMEPTFCEMYANF + LA ELP
Sbjct: 1289 LNKLTPQNFEKLFEQVKAVNIDNADTLTRVISQIFDKALMEPTFCEMYANFCFHLARELP 1348

Query: 202  DFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRW 261
            DFSEDNEKITFKRLLLNKCQEEFERGEREQEEAN+AD+EGEIKQ+EEEREEKRIKARRR 
Sbjct: 1349 DFSEDNEKITFKRLLLNKCQEEFERGEREQEEANRADEEGEIKQSEEEREEKRIKARRRM 1408

Query: 262  LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 321
            LGNIRLIGELYKK+MLTERIMHECIKKLLGQY+NPDEED+E+LC LMSTIGEMIDHPKAK
Sbjct: 1409 LGNIRLIGELYKKRMLTERIMHECIKKLLGQYQNPDEEDIESLCKLMSTIGEMIDHPKAK 1468

Query: 322  EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 381
            EHMD YFDRM KLSNNMKLSSRVR MLKD+I+LRKNKWQQRRKVEGPKKIEEVHRDAAQE
Sbjct: 1469 EHMDVYFDRMAKLSNNMKLSSRVRFMLKDAIDLRKNKWQQRRKVEGPKKIEEVHRDAAQE 1528

Query: 382  RQAQASRLARGPSMNSSSRRAPMDFG 407
            RQAQASRL+RGPSMNSS+RR    +G
Sbjct: 1529 RQAQASRLSRGPSMNSSTRRGAPSYG 1554

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527260|ref|XP_003532230.1| PREDICTED: eukaryotic translation initiation factor 4G-like [Glycine max]

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 223/280 (79%), Positives = 246/280 (87%), Gaps = 2/280 (0%)

Query: 137  ECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFL 196
            + +G + +L   NF+KLF+QV+AVNIDN VTL GV+SQIF+KALMEPTFCEMYANF + L
Sbjct: 1224 QLKGILNKLTPQNFEKLFDQVRAVNIDNVVTLNGVISQIFEKALMEPTFCEMYANFCFHL 1283

Query: 197  AGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIK 256
            A  LPD S+DNEKITFKRLLLNKCQEEFERGEREQEEANKAD EGE+K + EEREEKR K
Sbjct: 1284 AAVLPDLSQDNEKITFKRLLLNKCQEEFERGEREQEEANKAD-EGEVKLSNEEREEKRTK 1342

Query: 257  ARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMID 316
            ARRR LGNIRLIGELYKKKMLTERIMHECIKKLLGQY++PDEED+EALC LMSTIGEMID
Sbjct: 1343 ARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQYQDPDEEDIEALCKLMSTIGEMID 1402

Query: 317  HPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHR 376
            HPKAKEHMDAYF+ M  LSNNM LSSR+R MLKD I+LRKNKWQQRRKVEGPKKIEEVHR
Sbjct: 1403 HPKAKEHMDAYFEMMRSLSNNMNLSSRLRFMLKDVIDLRKNKWQQRRKVEGPKKIEEVHR 1462

Query: 377  DAAQERQAQASRLARGPSMNSSSRRAPMDFGPRGLSLGTP 416
            DA+QER AQASRL RGP  N+  RR PMDFGPRG S+ +P
Sbjct: 1463 DASQERLAQASRLGRGPG-NNPPRRIPMDFGPRGSSMLSP 1501

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503216|ref|XP_003520407.1| PREDICTED: eukaryotic translation initiation factor 4G-like [Glycine max]

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/275 (82%), Positives = 247/275 (89%), Gaps = 1/275 (0%)

Query: 142  IGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELP 201
            + +L   NF +LFEQVKAVNIDNAVTL GV+SQIF+KALMEPTFCEMYANF + LA ELP
Sbjct: 1033 LNKLTPQNFDRLFEQVKAVNIDNAVTLTGVISQIFEKALMEPTFCEMYANFCFHLASELP 1092

Query: 202  DFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRW 261
            DFSEDNEKITFKRLLLNKCQEEFERGERE+EEANKAD EGE+KQ+ EEREE+R+KARRR 
Sbjct: 1093 DFSEDNEKITFKRLLLNKCQEEFERGEREEEEANKAD-EGEVKQSAEEREERRVKARRRM 1151

Query: 262  LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 321
            LGNIRLIGELYKKKMLTERIMHECIKKLLGQY++PDEED+EALC LMSTIGEMIDHPKAK
Sbjct: 1152 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYQDPDEEDIEALCKLMSTIGEMIDHPKAK 1211

Query: 322  EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 381
             HMDAYF+RM+ LSNNM LSSRVR MLKDSI+LRKNKWQQRRKVEGPKKIEEVHRDAAQE
Sbjct: 1212 VHMDAYFERMKLLSNNMNLSSRVRFMLKDSIDLRKNKWQQRRKVEGPKKIEEVHRDAAQE 1271

Query: 382  RQAQASRLARGPSMNSSSRRAPMDFGPRGLSLGTP 416
            RQAQA R  RG   N S+RR PMDFGPRG  L +P
Sbjct: 1272 RQAQAGRPGRGLGNNQSARRNPMDFGPRGSMLSSP 1306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	436
TAIR|locus:2081927	1727	EIF4G "AT3G60240" [Arabidopsis	0.616	0.155	0.629	1e-83
ZFIN|ZDB-GENE-070112-702	1592	zgc:158450 "zgc:158450" [Danio	0.360	0.098	0.457	4.4e-42
UNIPROTKB|E1BSG5	1431	Gga.53666 "Uncharacterized pro	0.314	0.095	0.485	6.7e-42
UNIPROTKB|F1MX04	1627	EIF4G1 "Uncharacterized protei	0.341	0.091	0.462	2.5e-41
UNIPROTKB|J9P357	1255	EIF4G1 "Uncharacterized protei	0.341	0.118	0.455	4e-41
UNIPROTKB|F1PNF3	1421	EIF4G1 "Uncharacterized protei	0.341	0.104	0.455	5.8e-41
ZFIN|ZDB-GENE-090312-49	1700	eif4g3b "eukaryotic translatio	0.318	0.081	0.475	7.6e-41
UNIPROTKB|G5E9S1	1404	EIF4G1 "Eukaryotic translation	0.341	0.106	0.455	9.1e-41
UNIPROTKB|E7EX73	1436	EIF4G1 "Eukaryotic translation	0.341	0.103	0.455	9.7e-41
UNIPROTKB|E9PGM1	1513	EIF4G1 "Eukaryotic translation	0.341	0.098	0.455	1.1e-40

TAIR|locus:2081927 EIF4G "AT3G60240" [Arabidopsis thaliana (taxid:3702)]

 Score = 844 (302.2 bits), Expect = 1.0e-83, Sum P(2) = 1.0e-83
 Identities = 170/270 (62%), Positives = 201/270 (74%)

Query:   142 IGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELP 201
             + +L   NF+KLFEQVK+VNIDNAVTL+GV+SQIFDKALMEPTFCEMYA+F + L+G LP
Sbjct:  1103 LNKLTPQNFEKLFEQVKSVNIDNAVTLSGVISQIFDKALMEPTFCEMYADFCFHLSGALP 1162

Query:   202 DFSEDNEKITFKRLLLNKCXXXXXXXXXXXXXANKADXXXXXXXXXXXXXXXXXXXXXXW 261
             DF+E+ EKITFKRLLLNKC             A++                         
Sbjct:  1163 DFNENGEKITFKRLLLNKCQEEFERGEKEEEEASRVAEEGQVEQTEEEREEKRLQVRRRM 1222

Query:   262 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 321
             LGNIRLIGELYKK+MLTE+IMH CI+KLLG  ++P EE++EALC LMSTIG MIDH KAK
Sbjct:  1223 LGNIRLIGELYKKRMLTEKIMHACIQKLLGYNQDPHEENIEALCKLMSTIGVMIDHNKAK 1282

Query:   322 EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 381
               MD YF++M+ LS   +LSSRVR ML ++I+LRKNKWQ+R KVEGPKKIEEVHRDAAQE
Sbjct:  1283 FQMDGYFEKMKMLSCKQELSSRVRFMLINAIDLRKNKWQERMKVEGPKKIEEVHRDAAQE 1342

Query:   382 RQAQASRLARGPSMNSSSRRAPMDFG-PRG 410
             RQ QA+RL+RGPSMNSS RR  M+F  PRG
Sbjct:  1343 RQTQANRLSRGPSMNSSGRRGHMEFSSPRG 1372

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0009615 "response to virus" evidence=IMP

ZFIN|ZDB-GENE-070112-702 zgc:158450 "zgc:158450" [Danio rerio (taxid:7955)]

 Score = 345 (126.5 bits), Expect = 4.4e-42, Sum P(2) = 4.4e-42
 Identities = 76/166 (45%), Positives = 102/166 (61%)

Query:   262 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 321
             LGNI+ IGEL+K KMLTE IMH+CI KLL   +N DE+ +E LC L+STIG+ +D  KAK
Sbjct:   871 LGNIKFIGELFKLKMLTEPIMHDCIVKLL---KNHDEDSLECLCRLLSTIGKDLDFEKAK 927

Query:   322 EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 381
               MD YF +MEK+    K SSR+R ML+D ++LRKN W  RR  +GPK I+++H++A  E
Sbjct:   928 PRMDQYFHQMEKIIKEKKTSSRIRFMLQDVLDLRKNNWVPRRGDQGPKTIDQIHKEAELE 987

Query:   382 R-----QAQASRLAR-GPSMNSSSRRAPMDFGPRGLSLGTPIFNII 421
                   + Q   L++   S     R  P   G RG       +NI+
Sbjct:   988 EHREQIKVQQQLLSKKDSSQGRGGRGGPHSSGGRGSQTQDEGWNIV 1033

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1BSG5 Gga.53666 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 349 (127.9 bits), Expect = 6.7e-42, Sum P(2) = 6.7e-42
 Identities = 69/142 (48%), Positives = 97/142 (68%)

Query:   262 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 321
             LGNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++TIG+ +D  KAK
Sbjct:   826 LGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFEKAK 882

Query:   322 EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 381
               MD YF++MEK+    K SSR+R ML+D I+LR+N W  RR  +GPK I+++H++A  E
Sbjct:   883 PRMDQYFNQMEKIIKEKKTSSRIRFMLQDVIDLRRNSWVPRRGDQGPKTIDQIHKEAEME 942

Query:   382 RQAQASRLARGPSMNSSSRRAP 403
                +  ++ +   M+   RR P
Sbjct:   943 EHREHIKVQQ--LMSKDKRRGP 962

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1MX04 EIF4G1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 352 (129.0 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
 Identities = 73/158 (46%), Positives = 104/158 (65%)

Query:   262 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 321
             LGNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++TIG+ +D  KAK
Sbjct:   923 LGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFEKAK 979

Query:   322 EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 381
               MD YF++MEK+    K SSR+R ML+D ++LRK+ W  RR  +GPK I+++H++A  E
Sbjct:   980 PRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRKSNWVPRRGDQGPKTIDQIHKEAEME 1039

Query:   382 RQAQASRLARGPSMNSSSRRAPMDFGPRG--LSLGTPI 417
                +  ++ +  +  S  RR     GP G  +S G P+
Sbjct:  1040 EHREHIKVQQLMAKGSDKRRG----GPPGPPISRGLPL 1073

GO:0005737 "cytoplasm" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|J9P357 EIF4G1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 347 (127.2 bits), Expect = 4.0e-41, Sum P(2) = 4.0e-41
 Identities = 72/158 (45%), Positives = 104/158 (65%)

Query:   262 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 321
             LGNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++TIG+ +D  KAK
Sbjct:   915 LGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFEKAK 971

Query:   322 EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 381
               MD YF++MEK+    K SSR+R ML+D ++LR++ W  RR  +GPK I+++H++A  E
Sbjct:   972 PRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRRSNWVPRRGDQGPKTIDQIHKEAEME 1031

Query:   382 RQAQASRLARGPSMNSSSRRAPMDFGPRG--LSLGTPI 417
                +  ++ +  +  S  RR     GP G  +S G P+
Sbjct:  1032 EHWEHVKVQQLMAKGSDKRRG----GPPGPPISRGLPL 1065

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1PNF3 EIF4G1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 347 (127.2 bits), Expect = 5.8e-41, Sum P(2) = 5.8e-41
 Identities = 72/158 (45%), Positives = 104/158 (65%)

Query:   262 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 321
             LGNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++TIG+ +D  KAK
Sbjct:   723 LGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFEKAK 779

Query:   322 EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 381
               MD YF++MEK+    K SSR+R ML+D ++LR++ W  RR  +GPK I+++H++A  E
Sbjct:   780 PRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRRSNWVPRRGDQGPKTIDQIHKEAEME 839

Query:   382 RQAQASRLARGPSMNSSSRRAPMDFGPRG--LSLGTPI 417
                +  ++ +  +  S  RR     GP G  +S G P+
Sbjct:   840 EHWEHVKVQQLMAKGSDKRRG----GPPGPPISRGLPL 873

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

ZFIN|ZDB-GENE-090312-49 eif4g3b "eukaryotic translation initiation factor 4 gamma, 3b" [Danio rerio (taxid:7955)]

 Score = 345 (126.5 bits), Expect = 7.6e-41, Sum P(2) = 7.6e-41
 Identities = 68/143 (47%), Positives = 97/143 (67%)

Query:   262 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 321
             +GNI+ IGEL+K +MLTE IMH+C+ KLL   +N DEE +E LC L++TIG+ +D  KAK
Sbjct:  1005 IGNIKFIGELFKLRMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFEKAK 1061

Query:   322 EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 381
               MD YF++MEK+    K SSR+R ML+D I+LR + W  RR  +GPK IE++H+DA  E
Sbjct:  1062 PRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLHNWVSRRADQGPKTIEQIHKDAKLE 1121

Query:   382 RQAQASRLARGPSMNSSSRRAPM 404
              Q +  R      ++  ++R P+
Sbjct:  1122 EQEE-QRKVHQQLLSKDNKRRPV 1143

GO:0003723 "RNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|G5E9S1 EIF4G1 "Eukaryotic translation initiation factor 4 gamma, 1, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 345 (126.5 bits), Expect = 9.1e-41, Sum P(2) = 9.1e-41
 Identities = 72/158 (45%), Positives = 103/158 (65%)

Query:   262 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 321
             LGNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++TIG+ +D  KAK
Sbjct:   701 LGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFEKAK 757

Query:   322 EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 381
               MD YF++MEK+    K SSR+R ML+D ++LR + W  RR  +GPK I+++H++A  E
Sbjct:   758 PRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRGSNWVPRRGDQGPKTIDQIHKEAEME 817

Query:   382 RQAQASRLARGPSMNSSSRRAPMDFGPRG--LSLGTPI 417
                +  ++ +  +  S  RR     GP G  +S G P+
Sbjct:   818 EHREHIKVQQLMAKGSDKRRG----GPPGPPISRGLPL 851

GO:0003677 "DNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|E7EX73 EIF4G1 "Eukaryotic translation initiation factor 4 gamma 1" [Homo sapiens (taxid:9606)]

 Score = 345 (126.5 bits), Expect = 9.7e-41, Sum P(2) = 9.7e-41
 Identities = 72/158 (45%), Positives = 103/158 (65%)

Query:   262 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 321
             LGNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++TIG+ +D  KAK
Sbjct:   733 LGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFEKAK 789

Query:   322 EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 381
               MD YF++MEK+    K SSR+R ML+D ++LR + W  RR  +GPK I+++H++A  E
Sbjct:   790 PRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRGSNWVPRRGDQGPKTIDQIHKEAEME 849

Query:   382 RQAQASRLARGPSMNSSSRRAPMDFGPRG--LSLGTPI 417
                +  ++ +  +  S  RR     GP G  +S G P+
Sbjct:   850 EHREHIKVQQLMAKGSDKRRG----GPPGPPISRGLPL 883

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

UNIPROTKB|E9PGM1 EIF4G1 "Eukaryotic translation initiation factor 4 gamma 1" [Homo sapiens (taxid:9606)]

 Score = 345 (126.5 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
 Identities = 72/158 (45%), Positives = 103/158 (65%)

Query:   262 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAK 321
             LGNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++TIG+ +D  KAK
Sbjct:   810 LGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTTIGKDLDFEKAK 866

Query:   322 EHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKKIEEVHRDAAQE 381
               MD YF++MEK+    K SSR+R ML+D ++LR + W  RR  +GPK I+++H++A  E
Sbjct:   867 PRMDQYFNQMEKIIKEKKTSSRIRFMLQDVLDLRGSNWVPRRGDQGPKTIDQIHKEAEME 926

Query:   382 RQAQASRLARGPSMNSSSRRAPMDFGPRG--LSLGTPI 417
                +  ++ +  +  S  RR     GP G  +S G P+
Sbjct:   927 EHREHIKVQQLMAKGSDKRRG----GPPGPPISRGLPL 960

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q76E23	IF4G_ARATH	No assigned EC number	0.7259	0.6169	0.1557	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019025001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (1577 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00007223001	SubName- Full=Chromosome undetermined scaffold_186, whole genome shotgun sequence; (236 aa)						•	•		0.868
	GSVIVG00020333001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (190 aa)						•	•		0.858
	GSVIVG00025466001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (225 aa)						•	•		0.854
	GSVIVG00032180001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (413 aa)						•			0.806
	GSVIVG00034135001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (413 aa)						•			0.806
	GSVIVG00016530001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (413 aa)						•			0.806
	GSVIVG00025658001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (437 aa)						•	•		0.574
	GSVIVG00022664001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (977 aa)				•		•	•		0.560
	GSVIVG00025451001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (605 aa)						•	•		0.519
	GSVIVG00016373001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (200 aa)						•	•		0.512

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	436
pfam02854	198	pfam02854, MIF4G, MIF4G domain	7e-42
smart00543	200	smart00543, MIF4G, Middle domain of eukaryotic ini	1e-38

>gnl|CDD|217253 pfam02854, MIF4G, MIF4G domain

 Score =  146 bits (371), Expect = 7e-42
 Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 36/226 (15%)

Query: 138 CRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLA 197
            +G + +L+  NF+K+ +++  +N+ +   L  ++  IF+KA+ EP F   YA     L 
Sbjct: 4   VKGLLNKLSPSNFEKIIDELLKLNMSDKNLLKYILELIFEKAVEEPNFIPAYARLCAGLN 63

Query: 198 GELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKA 257
            + PDF E         LLLN+ QEEFE+G                       EE+    
Sbjct: 64  SKNPDFGE---------LLLNRLQEEFEKGV----------------------EEEERGN 92

Query: 258 RRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQ---YENPDEEDVEALCILMSTIGEM 314
           R+R LG +R +GEL+  K+LTE+I+ EC+K+LL      +  DE  +E L +L++T G++
Sbjct: 93  RKRRLGLVRFLGELFNFKVLTEKIILECLKELLESLTEEDPRDEFSLEILLLLLTTCGKL 152

Query: 315 IDHPKAKEHMDAYFDRMEKLSNNM--KLSSRVRLMLKDSIELRKNK 358
           +D  K K+ MD   +R++K   +   +LSSR+R ML+D IELRKNK
Sbjct: 153 LDREKLKKLMDEILERIQKYLLSADPELSSRLRFMLEDLIELRKNK 198

MIF4G is named after Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Length = 198

>gnl|CDD|214713 smart00543, MIF4G, Middle domain of eukaryotic initiation factor 4G (eIF4G)

 Score =  138 bits (349), Expect = 1e-38
 Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 38/228 (16%)

Query: 138 CRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLA 197
            +G I +L+  NF+ + +++  +N  +      ++  IF+KA+ EP F   YA     L 
Sbjct: 4   VKGLINKLSPSNFESIIKELLKLNNSDKNLRKYILELIFEKAVEEPNFIPAYARLCALLN 63

Query: 198 GELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKA 257
            + PDF           LLL + QEEFE+G                       E +    
Sbjct: 64  AKNPDFGS---------LLLERLQEEFEKG----------------------LESEEESD 92

Query: 258 RRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPD----EEDVEALCILMSTIGE 313
           ++R LG +R +GELY  ++LT +I+ E +K+LL      D    +  VE L  L+ T G+
Sbjct: 93  KQRRLGLVRFLGELYNFQVLTSKIILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCGK 152

Query: 314 MIDHPKAKEHMDAYFDRMEKLSNNMK---LSSRVRLMLKDSIELRKNK 358
            ++  K+ + +D   +R++          LSSR+R ML+  IELRKNK
Sbjct: 153 DLEREKSPKLLDEILERLQDYLLKKDKTELSSRLRFMLELLIELRKNK 200

Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press). Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	436
KOG0401	970	consensus Translation initiation factor 4F, riboso	100.0
PF02854	209	MIF4G: MIF4G domain; InterPro: IPR003890 This entr	100.0
smart00543	200	MIF4G Middle domain of eukaryotic initiation facto	99.97
KOG2140	739	consensus Uncharacterized conserved protein [Gener	99.85
KOG2141	822	consensus Protein involved in high osmolarity sign	99.72
KOG3942	348	consensus MIF4G domain-containing protein [Transla	99.18
KOG2051	1128	consensus Nonsense-mediated mRNA decay 2 protein [	98.83
KOG0401	970	consensus Translation initiation factor 4F, riboso	98.56
KOG2051	1128	consensus Nonsense-mediated mRNA decay 2 protein [	97.93
KOG1104	759	consensus Nuclear cap-binding complex, subunit NCB	95.96
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	93.92
PF02847	113	MA3: MA3 domain; InterPro: IPR003891 This entry re	92.73
smart00544	113	MA3 Domain in DAP-5, eIF4G, MA-3 and other protein	90.98
KOG2140	739	consensus Uncharacterized conserved protein [Gener	89.44
PF07817	256	GLE1: GLE1-like protein; InterPro: IPR012476 The m	83.03

>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.9e-39  Score=363.47  Aligned_cols=272  Identities=38%  Similarity=0.663  Sum_probs=231.2

Q ss_pred             CCcccccchhhhhhhcccccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhccccChHHHHHHHHHHHHHhhcC
Q 013803          103 NDKKHRNSRDKEIRSDNRGKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALME  182 (436)
Q Consensus       103 ~~~~~~~~r~~~~r~~~~g~~~~s~~~~~~kl~r~Vk~ILNKLTpenFd~i~~qL~~l~i~~~e~L~~VI~lIfeKAi~E  182 (436)
                      |.|.++.......+.+.++....     ...+.+.|++|||||||.+|+.+..+++.+.+++.+.++.+|.+||+||+.|
T Consensus       323 ~~ps~k~a~~~~~~~~~~~~~~~-----~~el~~~vrsilnkltp~~~~~l~~q~~~~~i~t~~~l~~vi~~vfdkAi~E  397 (970)
T KOG0401|consen  323 PSPSPKRAKSKSDQGAERKDVEL-----KEELAKRVRSLLNKLTPERKELLIEQLIELNVDTDDALKEVIELVFDKAINE  397 (970)
T ss_pred             CCCcchhhccccccccccchhHH-----HHHHHHHHhhhcCCCchHHHHHHHHHHHhhccCcHHHHhHHHHHHHHhhhcc
Confidence            66777766655556666665533     3358999999999999999999999999999999999999999999999999


Q ss_pred             CchhhHHHHHHHHHHh--cCCCCCCchhhhHHHHHHHHHHHHHHHhhH-HHHHHhhhhcchhhhhccHHHHHHHHHHHhh
Q 013803          183 PTFCEMYANFFYFLAG--ELPDFSEDNEKITFKRLLLNKCQEEFERGE-REQEEANKADKEGEIKQTEEEREEKRIKARR  259 (436)
Q Consensus       183 p~fs~mYA~LC~~L~~--~lp~~~~~~~~~~FR~~LL~rcQ~eFe~~~-~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Kr  259 (436)
                      |.||.|||+||..|..  ..|....++..++||+.||++||.+|+... ....+.....+..   ..++++++.+..+++
T Consensus       398 P~f~~~yA~lc~~l~~~~~~~~~~~~~~~~~fr~~lL~rcq~~fe~~~~~~~~~~~~~~~~~---~~e~~le~~k~~~~~  474 (970)
T KOG0401|consen  398 PTFCAMYARLCFDLEGPPSEPELDMGGDEINFRRLLLNRCQKEFEGEDDKIADEYSEAEEPD---ELEEELEEEKYILRR  474 (970)
T ss_pred             cccchhcchhcccccCCccCCCcCCCCCcccHHHHHHHHhHHHhhcccHHHHHHhhhhcCch---hHHHHHHhccceecC
Confidence            9999999999999987  223333455788999999999999999876 2222222221111   246677788889999


Q ss_pred             hHHHHHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhhccCccchHH-HHHHHHHHHHHhhCC
Q 013803          260 RWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEH-MDAYFDRMEKLSNNM  338 (436)
Q Consensus       260 r~lG~IrFIGELFk~~vLs~kII~~cI~~LL~~~~~p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~-md~~f~~L~~l~~~~  338 (436)
                      +.+|+++|||+||+..|++++|||.|+..||...+ ++|++|||+|.|++|+|..+|..+.+.. ||.||..++.+....
T Consensus       475 rtlgn~~~ig~l~~~~ml~e~i~~~~v~~Ll~~~~-~~ee~ie~lc~f~~tig~~lD~~~~s~r~md~~~~~~k~~~~~~  553 (970)
T KOG0401|consen  475 RTLGNFRFIGELFKLKMLTEKIVHACVQKLLSDDQ-PSEESIECLCRFLTTIGKKLDFSKESPRNMDEYFNSMKNLKRKP  553 (970)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhhhHHhhhhcccccccccCcccchhHHHHHHHHHhhhhh
Confidence            99999999999999999999999999999998533 7999999999999999999997555555 999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHcCCccccccCCCC-ChHHHHHHHHHHHH
Q 013803          339 KLSSRVRLMLKDSIELRKNKWQQRRKVEGPK-KIEEVHRDAAQERQ  383 (436)
Q Consensus       339 ~lS~RIRFmI~dLiDLR~nnW~~r~~~~~pk-ti~eih~ea~~e~~  383 (436)
                      .+++|+|||+++++|||.++|++++...++. +|++||.++..+.+
T Consensus       554 ~~s~r~RfM~~~~idlR~~~w~~rr~~~~~~~~ieei~~~~~~~~~  599 (970)
T KOG0401|consen  554 QRSNRIRFMLQSVIDLRKSGWGPRRAEETNDKPIEEIAPEAPSANR  599 (970)
T ss_pred             hhccchhhhhccccccccccccchhcccCCCCchhhcchhhhhhcc
Confidence            9999999999999999999999999988887 99999999987766

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain

Probab=100.00  E-value=3.1e-33  Score=258.31  Aligned_cols=198  Identities=38%  Similarity=0.695  Sum_probs=174.9

Q ss_pred             HHHHHhhcCCCCCCHHHHHHHHHhccccC-hHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCCCCchhhhHHHH
Q 013803          136 IECRGDIGRLNAPNFKKLFEQVKAVNIDN-AVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKR  214 (436)
Q Consensus       136 r~Vk~ILNKLTpenFd~i~~qL~~l~i~~-~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~~~~~~FR~  214 (436)
                      ++|+++|||||++||+.++++|..+...+ .+.++.+++.||++|+.+|+|+.+||+||..|+...+        ..|+.
T Consensus         2 r~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~--------~~f~~   73 (209)
T PF02854_consen    2 RKVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFP--------SEFRS   73 (209)
T ss_dssp             HHHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCH--------HHHHH
T ss_pred             chHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccch--------hhHHH
Confidence            78999999999999999999999987764 8999999999999999999999999999999998753        68999


Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhcCCC
Q 013803          215 LLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYE  294 (436)
Q Consensus       215 ~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~cI~~LL~~~~  294 (436)
                      .|++.||++|+....                 .++.+......+++..|+++||||||+.++++.++|++|+..|+....
T Consensus        74 ~ll~~~~~~f~~~~~-----------------~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~  136 (209)
T PF02854_consen   74 LLLNRCQEEFEERYS-----------------NEELEENRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGT  136 (209)
T ss_dssp             HHHHHHHHHHHHHT------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhhh-----------------hhhHHHHHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhccc
Confidence            999999999998541                 111223445677889999999999999999999999999999998532


Q ss_pred             -----CCChhhHHHHHHHHHHHhhhcc-CccchHHHHHHHHHHHHHhhC---CCCChHHHHHHHHHHHHHHcC
Q 013803          295 -----NPDEEDVEALCILMSTIGEMID-HPKAKEHMDAYFDRMEKLSNN---MKLSSRVRLMLKDSIELRKNK  358 (436)
Q Consensus       295 -----~p~Ee~IE~Lc~LL~tiG~~Ld-~~k~k~~md~~f~~L~~l~~~---~~lS~RIRFmI~dLiDLR~nn  358 (436)
                           .+++++|||+|.+|.++|+.|+ .+..+..|+.+|..++....+   ..+++|+||||++++|+|++|
T Consensus       137 ~~~~~~~~~~~ie~~~~lL~~~G~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~l~~lr~~~  209 (209)
T PF02854_consen  137 DECQPPPDEENIECLCTLLKTCGKKLENSEESPKALDEIFERLQKYANSKKDPNLSSRIRFMLEDLIELRNNK  209 (209)
T ss_dssp             HHCCHHTCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHSSSSSHHHHHHHHHHHHHHHTC
T ss_pred             ccccCCCcHhHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhcCC
Confidence                 2567999999999999999999 445678999999999999887   789999999999999999986

MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....

>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G)

Probab=99.97  E-value=5.2e-29  Score=230.36  Aligned_cols=192  Identities=33%  Similarity=0.534  Sum_probs=169.7

Q ss_pred             HHHHHhhcCCCCCCHHHHHHHHHhccccChHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCCCCchhhhHHHHH
Q 013803          136 IECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRL  215 (436)
Q Consensus       136 r~Vk~ILNKLTpenFd~i~~qL~~l~i~~~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~~~~~~FR~~  215 (436)
                      ++|+++|||||++||+.++++|..++..+++..+.+++.||++|+.+|.|+.+||+||..|+...         ..|+..
T Consensus         2 ~~v~~~lnkLs~~n~~~~~~~l~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~l~~~~---------~~f~~~   72 (200)
T smart00543        2 KKVKGLINKLSPSNFESIIKELLKLNNSDKNLRKYILELIFEKAVEEPNFIPAYARLCALLNAKN---------PDFGSL   72 (200)
T ss_pred             hHHHHHHhhCCHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH---------HHHHHH
Confidence            57899999999999999999999998888889999999999999999999999999999998764         279999


Q ss_pred             HHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhcCCCC
Q 013803          216 LLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYEN  295 (436)
Q Consensus       216 LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~cI~~LL~~~~~  295 (436)
                      +++.|+++|+.....                      .+...++++.|+++||||||+.++++..++++|+..|+.....
T Consensus        73 ll~~~~~~f~~~~e~----------------------~~~~~~~~~~~~i~fl~eL~~~~~i~~~~i~~~l~~ll~~~~~  130 (200)
T smart00543       73 LLERLQEEFEKGLES----------------------EEESDKQRRLGLVRFLGELYNFQVLTSKIILELLKELLNDLTK  130 (200)
T ss_pred             HHHHHHHHHHHHHHH----------------------HHHHhhhhHHhHHHHHHHHHHcccCcHHHHHHHHHHHHhccCC
Confidence            999999999875211                      1123457789999999999999999999999999999986433


Q ss_pred             ----CChhhHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHcC
Q 013803          296 ----PDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNM---KLSSRVRLMLKDSIELRKNK  358 (436)
Q Consensus       296 ----p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~f~~L~~l~~~~---~lS~RIRFmI~dLiDLR~nn  358 (436)
                          +++.++||+|.+|.++|+.|+.+..+..|+.+|+.++....+.   .+++|++||+++++++|++.
T Consensus       131 ~~~~~~~~~ve~l~~lL~~~G~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~r~~~~l~~l~~l~~~~  200 (200)
T smart00543      131 LDPPRSDFSVECLLSLLPTCGKDLEREKSPKLLDEILERLQDYLLKKDKTELSSRLRFMLELLIELRKNK  200 (200)
T ss_pred             CCCCCcHHHHHHHHHHHHHhhHHHcCcccHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHhhCc
Confidence                3468999999999999999995456789999999999998776   78999999999999999863

Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)

>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]

Probab=99.85  E-value=1e-20  Score=195.56  Aligned_cols=220  Identities=20%  Similarity=0.337  Sum_probs=187.7

Q ss_pred             cCCCcccccchh-hhhhhcccccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhccccChHHHHHHHHHHHHHh
Q 013803          101 ERNDKKHRNSRD-KEIRSDNRGKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKA  179 (436)
Q Consensus       101 ~r~~~~~~~~r~-~~~r~~~~g~~~~s~~~~~~kl~r~Vk~ILNKLTpenFd~i~~qL~~l~i~~~e~L~~VI~lIfeKA  179 (436)
                      |=|.|+-++++- .+|.-.+..  .+ ||+-|..|+++|.+|+|||+.+|+..|+.+|++.+|-.+..|  ++..|++..
T Consensus       133 G~YIPPaKL~~mq~qi~Dk~s~--~y-QRmnWEalkksInglInkvn~sNi~~ii~eLfqeNiirgRgl--~crsv~~aq  207 (739)
T KOG2140|consen  133 GAYIPPAKLRMMQAQITDKNSI--EY-QRMNWEALKKSINGLINKVNASNIQEIIRELFQENIIRGRGL--LCRSVMQAQ  207 (739)
T ss_pred             CeecCHHHHHHHHHHhcccchH--HH-HHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHhccch--hHHHHHHHH
Confidence            338999888853 334333322  23 677777999999999999999999999999999999888888  999999999


Q ss_pred             hcCCchhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhh
Q 013803          180 LMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARR  259 (436)
Q Consensus       180 i~Ep~fs~mYA~LC~~L~~~lp~~~~~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Kr  259 (436)
                      ...|.|+++||.|.+.|...+|.+.         .+||.+..-.|.+.+..+                         .|.
T Consensus       208 ~asp~ft~vyaALvAviNskfP~Ig---------ElLlkrLilqf~r~f~Rn-------------------------Dk~  253 (739)
T KOG2140|consen  208 AASPGFTPVYAALVAVINSKFPQIG---------ELLLKRLILQFKRSFRRN-------------------------DKV  253 (739)
T ss_pred             hcCCCCcHHHHHHHHHHccCCchHH---------HHHHHHHHHHHHHHhccc-------------------------chH
Confidence            9999999999999999999998764         466666666777766432                         124


Q ss_pred             hHHHHHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHhhCCC
Q 013803          260 RWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMK  339 (436)
Q Consensus       260 r~lG~IrFIGELFk~~vLs~kII~~cI~~LL~~~~~p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~f~~L~~l~~~~~  339 (436)
                      .|++.++||++||+++|..+-++.+++.-||.   .|++++||.++.+|+.||..|-. .++..++.+|++++.|+....
T Consensus       254 ~c~~~~kfiahLinq~VahEIv~Leil~lLLe---~PTddSvevaI~flkecGakL~~-VSpr~~n~IfErlR~ILhe~E  329 (739)
T KOG2140|consen  254 SCLNASKFIAHLINQQVAHEIVALEILTLLLE---RPTDDSVEVAIAFLKECGAKLAE-VSPRALNGIFERLRYILHEGE  329 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHHHHHHH-hChHHHhHHHHHHHHHHhHhh
Confidence            58999999999999999999999999999998   59999999999999999999974 456789999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHcCCcccc
Q 013803          340 LSSRVRLMLKDSIELRKNKWQQRR  363 (436)
Q Consensus       340 lS~RIRFmI~dLiDLR~nnW~~r~  363 (436)
                      ++.|++|||+.++..|+.+++...
T Consensus       330 ld~rvqy~iEtlf~iRkdkfk~~p  353 (739)
T KOG2140|consen  330 LDRRVQYMIETLFQIRKDKFKSHP  353 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCC
Confidence            999999999999999999988763

>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]

Probab=99.72  E-value=6.3e-16  Score=164.96  Aligned_cols=200  Identities=20%  Similarity=0.338  Sum_probs=149.9

Q ss_pred             HHHHHHHHHHhhcCCCCCCHHHHHHHHHhccccCh-HHHHHHHHHHHHHhhcCC-----chhhHHHHHHHHHHhcCCCCC
Q 013803          131 NLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNA-VTLAGVVSQIFDKALMEP-----TFCEMYANFFYFLAGELPDFS  204 (436)
Q Consensus       131 ~~kl~r~Vk~ILNKLTpenFd~i~~qL~~l~i~~~-e~L~~VI~lIfeKAi~Ep-----~fs~mYA~LC~~L~~~lp~~~  204 (436)
                      ..+++++|+|+||||+..|+.+|+..|..++..+. ...+.-+.-...+|+.-|     .++..||.|...|+...    
T Consensus       316 l~rl~rkv~g~LNKLSdaNi~~I~~~i~~Ly~~~sr~~v~~sLtk~l~~~~~~~~~~ld~~~~~y~AL~~~l~~~v----  391 (822)
T KOG2141|consen  316 LQRLRRKVNGSLNKLSDANIIKIIAGIAELYMNNSRYDVTSSLTKLLLKALLGPFRLLDSLLTTYAALAAMLHTMV----  391 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH----
Confidence            45799999999999999999999999999987542 233333444444555544     58899999999998754    


Q ss_pred             CchhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHH
Q 013803          205 EDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHE  284 (436)
Q Consensus       205 ~~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~  284 (436)
                          +..|--.++....+.|-...+..++         +...           -+.+.|++.|+++||+++++.+.+|++
T Consensus       392 ----g~eigahf~q~~ve~f~~~~~~~~~---------~~~~-----------~K~~~Nl~~~l~ylynF~ivs~~Liyd  447 (822)
T KOG2141|consen  392 ----GNEIGAHFLQTFVEDFLKSYKEEEE---------MDLK-----------DKSLNNIVLFLSYLYNFGIVSCSLIYD  447 (822)
T ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHHh---------cccc-----------cchhhhHHHHHHHHHHhhcccHHHHHH
Confidence                2223334444444455544432110         0000           245889999999999999999999999


Q ss_pred             HHHHHhcCCCCCChhhHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHhhCCC---CChHHHHHHHHHHHHHHcCCcc
Q 013803          285 CIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMK---LSSRVRLMLKDSIELRKNKWQQ  361 (436)
Q Consensus       285 cI~~LL~~~~~p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~f~~L~~l~~~~~---lS~RIRFmI~dLiDLR~nnW~~  361 (436)
                      +|..|..   +++|-++||+..++..||..|..+. ...|..++..|+..+.+..   .++|+|||++.++.|++|+-++
T Consensus       448 iI~kl~~---~l~e~~ve~ll~ii~~~G~~LRkDD-p~alk~~i~eiq~~a~~a~~s~~~pR~rFmleti~aLKnN~~kk  523 (822)
T KOG2141|consen  448 IIRKLAE---NLNETNVEALLTIIANCGFSLRKDD-PLALKDIITEIQSKAASAKISAISPRLRFMLETISALKNNKLKK  523 (822)
T ss_pred             HHHHHHh---chhhhhHHHHHHHHHHccchhcCCC-hHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHhcCCCcC
Confidence            9999998   5999999999999999999998653 3667788888877665433   4799999999999999988766


Q ss_pred             c
Q 013803          362 R  362 (436)
Q Consensus       362 r  362 (436)
                      .
T Consensus       524 i  524 (822)
T KOG2141|consen  524 I  524 (822)
T ss_pred             C
Confidence            5

>KOG3942 consensus MIF4G domain-containing protein [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=3.4e-10  Score=111.66  Aligned_cols=170  Identities=18%  Similarity=0.154  Sum_probs=137.7

Q ss_pred             ChHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhh
Q 013803          164 NAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEI  243 (436)
Q Consensus       164 ~~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~  243 (436)
                      +.+.|-.++-.|..+|++.-.|.-.-++||..|.....      .++.|+..||+.|++.|+-...-             
T Consensus       163 ~de~l~rc~~~~~r~avegg~ggl~v~klC~n~~~~~~------~gt~f~~~Lln~lrq~f~~r~gl-------------  223 (348)
T KOG3942|consen  163 DDEMLFRCGPTIARQAVEGGGGGLFVCKLCTNLGSSWR------NGTQFMDELLNLLRQGFLLRTGL-------------  223 (348)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCchhHHHHhhhhhhhhh------ccchHHHHHHHHHHHhhccchhc-------------
Confidence            34778888999999999999999999999999976542      25679999999999999876321             


Q ss_pred             hccHHHHHHHHHHHhhhHHHHHHHHHHHHhcc-----CCcHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhhccCc
Q 013803          244 KQTEEEREEKRIKARRRWLGNIRLIGELYKKK-----MLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHP  318 (436)
Q Consensus       244 ~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~-----vLs~kII~~cI~~LL~~~~~p~Ee~IE~Lc~LL~tiG~~Ld~~  318 (436)
                                ......+++++|.|++|||..-     ++=..+++.|++.|+.. ++-.+..+|||.-.|...|..|++ 
T Consensus       224 ----------~s~~~~rw~~fisfltelf~nlgs~p~~vL~~~l~~cl~~llrs-pd~~~~e~ecl~~~L~~~g~dle~-  291 (348)
T KOG3942|consen  224 ----------SSLASCRWWRFISFLTELFDNLGSCPQVVLQRSLRLCLQILLRS-PDWPEFEYECLSMKLAVEGLDLEK-  291 (348)
T ss_pred             ----------cchhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHccC-CCcchHHHHHHHHHHHHcCccchh-
Confidence                      1123468999999999999875     66678999999999985 344588999999999999999986 


Q ss_pred             cchHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHHHHcCCccccc
Q 013803          319 KAKEHMDAYFDRMEKLSNNMKLS-SRVRLMLKDSIELRKNKWQQRRK  364 (436)
Q Consensus       319 k~k~~md~~f~~L~~l~~~~~lS-~RIRFmI~dLiDLR~nnW~~r~~  364 (436)
                      .....|..+|.-.++..-...-| .-+|.+|..+|+|.++.|+.+..
T Consensus       292 qlP~ql~lL~~s~rDafL~~sep~a~~r~~lllliel~As~wqlpt~  338 (348)
T KOG3942|consen  292 QLPFQLLLLFPSRRDAFLVRSEPLAPWRCPLLLLIELPASAWQLPTT  338 (348)
T ss_pred             hhhHHHHHHHHHHHHhhhccccccccccchhhhccccCccccCCCCC
Confidence            35577888888888765544333 34699999999999999999754

>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]

Probab=98.83  E-value=4.1e-08  Score=109.58  Aligned_cols=172  Identities=18%  Similarity=0.338  Sum_probs=129.0

Q ss_pred             CHHHHHHHHHhccccChHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHHHHHHHHhhH
Q 013803          149 NFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKCQEEFERGE  228 (436)
Q Consensus       149 nFd~i~~qL~~l~i~~~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~~~~~~FR~~LL~rcQ~eFe~~~  228 (436)
                      -+|..+-++... +++...=+.++..+|.---+.-...+.|++|++.|..-+|++.         .-|++.+-.+|....
T Consensus       442 liD~~a~ef~~n-lNtKa~RkrLvKal~~vprt~ldllPyYsRlVAtl~~~M~dva---------t~lv~~L~~eFr~~~  511 (1128)
T KOG2051|consen  442 LIDQAAIEFCSN-LNTKANRKRLVKALFVVPRTRLDLLPYYSRLVATLSKCMPDVA---------TELVTMLRKEFRSHL  511 (1128)
T ss_pred             HHHHHHHHHHHH-hccHHHHHHHHHhhhcccchhhhhhhHHHHHHHHHHhhhhHHH---------HHHHHHHHHHHHHHH
Confidence            333344344332 5666666778888887666666788999999999988766543         566777777777654


Q ss_pred             HHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 013803          229 REQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILM  308 (436)
Q Consensus       229 ~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~cI~~LL~~~~~p~Ee~IE~Lc~LL  308 (436)
                      ..+...            +-|          ..+-+|+|||||.|+++++..-++.|+..||.+.   .-.+||.+|.||
T Consensus       512 hkK~q~------------~ie----------tk~~~VrfIsEL~KF~lv~~~~if~cLk~ll~dF---~~hnIEm~c~lL  566 (1128)
T KOG2051|consen  512 HKKAQI------------NIE----------TKLKIVRFISELCKFQLVPKFEIFSCLKMLLNDF---THHNIEMACVLL  566 (1128)
T ss_pred             hhhhhh------------hhh----------hhhhhhhhHHhhhhhCccChHHHHHHHHHHHHhc---ccccHHHHHHHH
Confidence            321000            000          1245899999999999999999999999999854   445699999999


Q ss_pred             HHHhhhcc-CccchHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Q 013803          309 STIGEMID-HPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELR  355 (436)
Q Consensus       309 ~tiG~~Ld-~~k~k~~md~~f~~L~~l~~~~~lS~RIRFmI~dLiDLR  355 (436)
                      .+||..|- .|..+..|..+++.|........+.+|..-+|+|.+-+=
T Consensus       567 E~~GrfLlr~pEt~lrM~~~Le~i~rkK~a~~lDsr~~~~iENay~~~  614 (1128)
T KOG2051|consen  567 ESCGRFLLRSPETKLRMRVFLEQIKRKKRASALDSRQATLIENAYYLC  614 (1128)
T ss_pred             HhcchhhhcChhHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHhHHhc
Confidence            99999886 477788899999999977777788999999999988874

>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis]

Probab=98.56  E-value=9.7e-09  Score=117.27  Aligned_cols=285  Identities=19%  Similarity=0.225  Sum_probs=190.0

Q ss_pred             CCCCCcccCccCcCCCcccccchhhhhh--hcccccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhc-----c
Q 013803           89 PDDESELKNDNHERNDKKHRNSRDKEIR--SDNRGKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAV-----N  161 (436)
Q Consensus        89 ~~~~~~~~~~~~~r~~~~~~~~r~~~~r--~~~~g~~~~s~~~~~~kl~r~Vk~ILNKLTpenFd~i~~qL~~l-----~  161 (436)
                      +.++.-++..+.++|+|.....+-...-  ..+.+-.  ...    -..+.+.+.++++++++|+.+...++..     .
T Consensus       586 ~ieei~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~  659 (970)
T KOG0401|consen  586 PIEEIAPEAPSANRWSPKSLSKKTEGRLAEESDSGLL--GKE----VVERKGKSGLRKLTPEMFDKISDPILDIADQSMD  659 (970)
T ss_pred             chhhcchhhhhhcccCccccccccccccccccccccc--Ccc----ccccccccccccCChhhcccccccccccchhhcc
Confidence            5577777777888899988766433321  1111111  110    1346778999999999999999998754     2


Q ss_pred             ccChHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCC-C-----CCchhhhHHHHHHHHHHHHHHHhhHHHHHHhh
Q 013803          162 IDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPD-F-----SEDNEKITFKRLLLNKCQEEFERGEREQEEAN  235 (436)
Q Consensus       162 i~~~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~~lp~-~-----~~~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~  235 (436)
                      -.+.+..+.++..++.|+..+++|+.+|+..|.+....... +     ........+.+.+..+|+.+|.+.|.......
T Consensus       660 e~~~~~~k~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  739 (970)
T KOG0401|consen  660 EEDGEASKQKGEQGGRKASDEQHFSSMRAPALEKVVPSLSSDIDDKRNRGSNGELLSDSYLSARCHEEFENGWSRELPSG  739 (970)
T ss_pred             ccccchhhhcccccccccCccccccccCCccccccccccccccccccccCCccccccccccchhhhhhccccccccCCCC
Confidence            35678999999999999999999999999999987654421 1     01124556788999999999999987543322


Q ss_pred             hhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhhc
Q 013803          236 KADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMI  315 (436)
Q Consensus       236 k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~cI~~LL~~~~~p~Ee~IE~Lc~LL~tiG~~L  315 (436)
                      +..+. +.++...++ +.....+++.+|+| +......+.+.+..|+..|+...+.+...+..+.++..|.++++||..+
T Consensus       740 ~~~~~-~~e~~~~~~-~~~~~~~~~~~~~v-~~~~~~~l~~~sk~l~ee~~~~~~~~~~~~~ie~l~S~~~~~~~v~~~v  816 (970)
T KOG0401|consen  740 KDGER-EPEMMSPEY-YAAKAAKRAGLGLV-IALSSELLELLSKSLLEEFLSLRLEKEALKCIEELESPSLLLKTVGENI  816 (970)
T ss_pred             ccccc-chhhcCccc-chhhhhhccCCcch-hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhhHHHHHHhc
Confidence            21111 112222222 45567788999999 6666666778889999998888877666788899999999999999999


Q ss_pred             cCc--cchHHHHHHHHHHH-HHhhC-------CCCChHHHHHHHHHHHHH-HcCCccccccCCCCChHHHHHHHHHHHH
Q 013803          316 DHP--KAKEHMDAYFDRME-KLSNN-------MKLSSRVRLMLKDSIELR-KNKWQQRRKVEGPKKIEEVHRDAAQERQ  383 (436)
Q Consensus       316 d~~--k~k~~md~~f~~L~-~l~~~-------~~lS~RIRFmI~dLiDLR-~nnW~~r~~~~~pkti~eih~ea~~e~~  383 (436)
                      +..  +. ..+..+..+|. .++..       -..+.+..|-+.+-+.+. -..|.--....||.+++.++...+..+.
T Consensus       817 ~~~l~~~-~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~d~pk~w~~~~e~~gp~~~~~~~~~~e~~~~  894 (970)
T KOG0401|consen  817 EPTLEKS-PQAVEELLQLLDILVSKNPLSIETLEIGYREKFKLADDKELDLPKGWNYIKEFLGPLIHQKILDESELVRE  894 (970)
T ss_pred             CcccccC-hhHHHHHHHHHHHHHhcCcccHHHHhhhHHHHHhhhHHHhcccccchhHHHHhhhhHhhhccccHHHHHHH
Confidence            841  11 22222222222 22211       123556666666655554 4457766666777777777777665444

>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]

Probab=97.93  E-value=0.00039  Score=78.58  Aligned_cols=190  Identities=16%  Similarity=0.239  Sum_probs=121.6

Q ss_pred             HHHHHHhhc-CCCCCCHHHHHHHHHhccccChHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCCCCchhhhHHH
Q 013803          135 HIECRGDIG-RLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFK  213 (436)
Q Consensus       135 ~r~Vk~ILN-KLTpenFd~i~~qL~~l~i~~~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~~~~~~FR  213 (436)
                      +..|+-++- .|+.++|+.++..+-.+.=.++++-+.+|..+..-=.-.-.--..-|.|..-|+...|++.         
T Consensus       631 ~efiR~Li~~dL~k~tvd~~lkllRkl~W~D~e~~~yli~~~~k~w~iky~~i~~lA~llaGL~~y~~~fv---------  701 (1128)
T KOG2051|consen  631 QEFIRYLIRSDLSKDTVDRVLKLLRKLDWSDPEVKQYLISCFSKPWKIKYQNIHALASLLAGLSSYHPEFV---------  701 (1128)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHhcccccHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHhhchhhh---------
Confidence            334444333 6677788888888877766676766667766653322111222334555555544333321         


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhcCC
Q 013803          214 RLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQY  293 (436)
Q Consensus       214 ~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~cI~~LL~~~  293 (436)
                      -..+   -..+|......          |+         .....+.+++..++|+||||++.|+...+|...+-.++.--
T Consensus       702 i~VI---D~vlE~Ir~gl----------Ei---------n~~~~nQrriA~aryL~ELynfemvds~vIl~tLy~~i~~g  759 (1128)
T KOG2051|consen  702 IHVI---DHVLEDIRPGL----------EI---------NDYVSNQRRIALARYLGELYNFEMVDSDVILNTLYHLISLG  759 (1128)
T ss_pred             hhhH---HHHHHHHHhhh----------hc---------CcHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccc
Confidence            1111   11223222110          10         01234567899999999999999999999999998888531


Q ss_pred             --CC-------CCh--hhHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHH
Q 013803          294 --EN-------PDE--EDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNM--KLSSRVRLMLKDSIELR  355 (436)
Q Consensus       294 --~~-------p~E--e~IE~Lc~LL~tiG~~Ld~~k~k~~md~~f~~L~~l~~~~--~lS~RIRFmI~dLiDLR  355 (436)
                        ++       |.+  .-|-.+|.||.|||..++....+..|+.|+-.++...--.  ..|--+.++++|++.+-
T Consensus       760 ~~~~~~~~~ldppddlFRirlV~~lL~tc~~yf~rgs~kkkl~~fL~~fq~Y~~iKk~~~Pld~~~~f~d~~~~~  834 (1128)
T KOG2051|consen  760 HFENLTPSALDPPDDLFRIRLVCMLLQTCGPYFTRGSTKKKLDQFLVAFQRYILIKKSQQPLDMEYEFEDFLELV  834 (1128)
T ss_pred             ccCCCCcccCCChHHHHHHHHHHHHHHHcccccccchhHHHHHHHHHHHHHHhhcccccCCCchhhhHHhhhhhc
Confidence              12       333  3588999999999999997677888999888887654322  37888999999998864

>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]

Probab=95.96  E-value=0.41  Score=53.33  Aligned_cols=193  Identities=16%  Similarity=0.191  Sum_probs=129.8

Q ss_pred             HHHHHHHHhhcCCCCC-------CHHHHHHHHHhccccChHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCCCC
Q 013803          133 KWHIECRGDIGRLNAP-------NFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSE  205 (436)
Q Consensus       133 kl~r~Vk~ILNKLTpe-------nFd~i~~qL~~l~i~~~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~  205 (436)
                      .+.+.+.+..-++...       |++.++.-+.+- +  +..-..+++.|-.=|+.-|.=+..||-|...++.+-+    
T Consensus        26 ~l~krl~~~i~~vg~~s~ss~e~~l~~l~~~l~~~-~--~~~~~~iL~~L~~ca~~lP~K~~~yaTLvgllN~kn~----   98 (759)
T KOG1104|consen   26 TLEKRLESLIREVGEPSGSSVEDNLENLVAVLEAD-L--ENFKSKILDILNTCAVYLPEKITAYATLVGLLNLKNF----   98 (759)
T ss_pred             HHHHHHHHHHHhhcCCCCCcHHHhHHHHHHHHHhh-H--HHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhccch----
Confidence            4666777777777632       333333322221 1  2244557888888899999999999999999876532    


Q ss_pred             chhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHH
Q 013803          206 DNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHEC  285 (436)
Q Consensus       206 ~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~c  285 (436)
                           .|-..++...-.+|......                ..         -.++.+.++|++.|++-+|+...-|..+
T Consensus        99 -----~fg~~~v~~~~~~~q~sl~~----------------~~---------~n~ar~llrfL~dL~~~~vl~~~sli~l  148 (759)
T KOG1104|consen   99 -----NFGGEFVEYMIEELQESLKS----------------GN---------WNEARYLLRFLSDLSNCHVLQADSLINL  148 (759)
T ss_pred             -----hhHHHHHHHHHHHHHHHhhc----------------CC---------hHHHHHHHHHHHHHhcCCccChHHHHHH
Confidence                 33344444333333322110                00         0235579999999999999999998888


Q ss_pred             HHHHhcCC------CCCChhhHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHhhCCC---C------C--------h
Q 013803          286 IKKLLGQY------ENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMK---L------S--------S  342 (436)
Q Consensus       286 I~~LL~~~------~~p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~f~~L~~l~~~~~---l------S--------~  342 (436)
                      +..|+...      +.-.+..+-|+.--|--+|+.+.. +.+..|+.++..++......+   +      +        -
T Consensus       149 ~esl~~~~~e~~~Pqvr~D~~v~~vLs~lPw~g~el~e-~~~~~~e~ll~~ie~Yl~~R~~shi~lL~vw~~~~~~~qee  227 (759)
T KOG1104|consen  149 FESLLDAAIEENVPQVRRDYYVYCVLSSLPWFGRELNE-KKPTEMEELLVYIEIYLKKRKKSHINLLNVWSGEPDHPQEE  227 (759)
T ss_pred             HHHHHHHHHhhcCcchhhhHHHHHHHhccchhhhhhcc-cchHHHHHHHHHHHHHHHHhcccccchhhcCCCCCCchHHH
Confidence            88888642      223456788888888899999975 456789999999886543211   1      1        3


Q ss_pred             HHHHHHHHHHHHHHcCCcccc
Q 013803          343 RVRLMLKDSIELRKNKWQQRR  363 (436)
Q Consensus       343 RIRFmI~dLiDLR~nnW~~r~  363 (436)
                      =+..+...+.-+|.|+|..++
T Consensus       228 yle~L~~qI~~lr~n~w~e~h  248 (759)
T KOG1104|consen  228 YLELLWAQIQKLRQNDWAENH  248 (759)
T ss_pred             HHHHHHHHHHHHHhcCccccc
Confidence            478899999999999999854

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=93.92  E-value=0.83  Score=50.02  Aligned_cols=158  Identities=17%  Similarity=0.159  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhccc----cChHHHHHHHHHHHHHhhcCC----chhhHHHHHHHHHHhc
Q 013803          128 RMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNI----DNAVTLAGVVSQIFDKALMEP----TFCEMYANFFYFLAGE  199 (436)
Q Consensus       128 ~~~~~kl~r~Vk~ILNKLTpenFd~i~~qL~~l~i----~~~e~L~~VI~lIfeKAi~Ep----~fs~mYA~LC~~L~~~  199 (436)
                      .+...-+...|+.+|..+|.+.|+.+.+=|-.+.+    .+....+.+|++|+++|--+.    .....+.+|...+...
T Consensus       173 ~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~A  252 (556)
T PF05918_consen  173 KEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQA  252 (556)
T ss_dssp             HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHh
Confidence            33445678888999999999999999966656665    578899999999999995433    3347777887777777


Q ss_pred             CCCCCCchhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhcc--CC
Q 013803          200 LPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKK--ML  277 (436)
Q Consensus       200 lp~~~~~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~--vL  277 (436)
                      +|-+......+.|-.++..+.--.|...                   .++          ..+-+++.++|+--+-  +-
T Consensus       253 lp~fs~~v~Sskfv~y~~~kvlP~l~~l-------------------~e~----------~kl~lLk~lAE~s~~~~~~d  303 (556)
T PF05918_consen  253 LPFFSRGVSSSKFVNYMCEKVLPKLSDL-------------------PED----------RKLDLLKLLAELSPFCGAQD  303 (556)
T ss_dssp             GGG-BTTB--HHHHHHHHHHTCCCTT----------------------------------HHHHHHHHHHHHHTT----T
T ss_pred             hHHhcCCCChHHHHHHHHHHhcCChhhC-------------------ChH----------HHHHHHHHHHHHcCCCCccc
Confidence            7766544455667666654322222211                   011          1245677788876652  22


Q ss_pred             cHHHHHHHHHHHhcCCC----CCC--hhhHHHHHHHHHHHhhh
Q 013803          278 TERIMHECIKKLLGQYE----NPD--EEDVEALCILMSTIGEM  314 (436)
Q Consensus       278 s~kII~~cI~~LL~~~~----~p~--Ee~IE~Lc~LL~tiG~~  314 (436)
                      ...++-.+...|+....    .|+  --.||||...+...|+.
T Consensus       304 ~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k  346 (556)
T PF05918_consen  304 ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARK  346 (556)
T ss_dssp             HHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhh
Confidence            23333333344433211    121  25799999999888876

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]

Probab=92.73  E-value=1.2  Score=37.57  Aligned_cols=63  Identities=17%  Similarity=0.231  Sum_probs=45.6

Q ss_pred             HHHHHHhhcCC-CCCCHHHHHHHHHhccccChHHHHHHHHHHHHHhhcC-CchhhHHHHHHHHHHhc
Q 013803          135 HIECRGDIGRL-NAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALME-PTFCEMYANFFYFLAGE  199 (436)
Q Consensus       135 ~r~Vk~ILNKL-TpenFd~i~~qL~~l~i~~~e~L~~VI~lIfeKAi~E-p~fs~mYA~LC~~L~~~  199 (436)
                      +++|+.+|.-- +-...+..+..|.++.+.  .....||..++..+.++ +.+..+|+.|...|...
T Consensus         2 rk~i~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~   66 (113)
T PF02847_consen    2 RKKIFSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKR   66 (113)
T ss_dssp             HHHHHHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhc
Confidence            34444444321 124677788888887666  66778999999999998 89999999999999863

It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....

>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins

Probab=90.98  E-value=1.7  Score=36.84  Aligned_cols=62  Identities=18%  Similarity=0.137  Sum_probs=47.5

Q ss_pred             HHHHHhhcCC-CCCCHHHHHHHHHhccccChHHHHHHHHHHHHHhhcC-CchhhHHHHHHHHHHhc
Q 013803          136 IECRGDIGRL-NAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALME-PTFCEMYANFFYFLAGE  199 (436)
Q Consensus       136 r~Vk~ILNKL-TpenFd~i~~qL~~l~i~~~e~L~~VI~lIfeKAi~E-p~fs~mYA~LC~~L~~~  199 (436)
                      ++|..+|+.- +...++..+..|.++++.  ....+++..++.-|+++ +.+.++|+.|...|+..
T Consensus         3 k~i~~~l~ey~~~~D~~ea~~~l~~L~~~--~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~   66 (113)
T smart00544        3 KKIFLIIEEYLSSGDTDEAVHCLLELKLP--EQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQA   66 (113)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHc
Confidence            4444444332 356888899999888776  36677999999999988 58999999999999853

Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press

>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]

Probab=89.44  E-value=4.4  Score=44.05  Aligned_cols=115  Identities=12%  Similarity=0.177  Sum_probs=72.8

Q ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHHhccccChHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCCCCchhhhHHH
Q 013803          134 WHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFK  213 (436)
Q Consensus       134 l~r~Vk~ILNKLTpenFd~i~~qL~~l~i~~~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~~~~~~FR  213 (436)
                      ++++|  -|--.+-=.|+.....|+.+.|.+... ++|+.+|++-+.+|..|...|.-|...++.-         .....
T Consensus       454 frr~I--YLti~SSldfeEaaHKLLKmkip~~q~-~elc~mii~cc~QerTy~kFYglL~eRfc~l---------~r~~q  521 (739)
T KOG2140|consen  454 FRRTI--YLTIQSSLDFEEAAHKLLKMKIPESQE-KELCNMIIDCCAQERTYEKFYGLLGERFCML---------HREWQ  521 (739)
T ss_pred             hhhhh--eeeeeccCcHHHHHHHHHhccCCchhh-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---------HHHHH
Confidence            44444  233334446999999999988865433 4689999999999999999999888877642         11111


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHH
Q 013803          214 RLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIK  287 (436)
Q Consensus       214 ~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~cI~  287 (436)
                      .+.=..|++.|.....-  +                        -.+..+..+|+|+|.....|+-.++ .||.
T Consensus       522 ~~fe~~f~q~YstIhr~--E------------------------tnkLRnlakffahLlstd~lpw~vl-~~ik  568 (739)
T KOG2140|consen  522 EAFEKCFKQQYSTIHRY--E------------------------TNKLRNLAKFFAHLLSTDALPWDVL-ACIK  568 (739)
T ss_pred             HHHHHHHHHHHHHHHHH--h------------------------HHHHHHHHHHHHHHhcccccchHHH-HHhh
Confidence            22222233333332110  0                        0234567899999999999887765 4654

>PF07817 GLE1: GLE1-like protein; InterPro: IPR012476 The members of this family are sequences that are similar to the human protein GLE1 (O75458 from SWISSPROT)

Probab=83.03  E-value=29  Score=34.29  Aligned_cols=173  Identities=14%  Similarity=0.161  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHhhcCCCCC--CHHHHHHHHHhc-------------ccc-C----hHHHHHHHHHHHHHhhc----CCchh
Q 013803          131 NLKWHIECRGDIGRLNAP--NFKKLFEQVKAV-------------NID-N----AVTLAGVVSQIFDKALM----EPTFC  186 (436)
Q Consensus       131 ~~kl~r~Vk~ILNKLTpe--nFd~i~~qL~~l-------------~i~-~----~e~L~~VI~lIfeKAi~----Ep~fs  186 (436)
                      +..+++.|+.-+|.||..  .+..++.+|.++             ... +    .-.|..+++.|+..|-.    .|..+
T Consensus        26 ~~~~kr~I~~~vgQls~~~~qi~~i~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~lAk~iv~Q~e~ev~~~~~~A  105 (256)
T PF07817_consen   26 RFDLKRKINPKVGQLSNSSSQINRIINQISNLLSGQPVKSNDLQQSKNDHPLAYKYLLNFLAKKIVSQAETEVSANPESA  105 (256)
T ss_dssp             HHHHHHHHCCHHHC--SBHHHHHHHHHHHHHH----------HHTTTT-SHHHHHHHHHHHHHHHHHHHHHHHHH-GGGH
T ss_pred             HHHhhhhCcCcHhhccCcHHHHHHHHHHHHHHhhhhhhchhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccCCchh
Confidence            457889999999999965  455556666555             111 1    23455566666666654    57888


Q ss_pred             hHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHHHHHHHHhhH----HHHHHhhhhcchhhhh----ccHHHHHHHHHHHh
Q 013803          187 EMYANFFYFLAGELPDFSEDNEKITFKRLLLNKCQEEFERGE----REQEEANKADKEGEIK----QTEEEREEKRIKAR  258 (436)
Q Consensus       187 ~mYA~LC~~L~~~lp~~~~~~~~~~FR~~LL~rcQ~eFe~~~----~~~~e~~k~~ee~e~~----~s~eE~e~~~~k~K  258 (436)
                      .-+|.++..|....|++         ...|+.++...---..    ....  +..++++-..    ..+.- -|.....-
T Consensus       106 ~PlA~v~~~l~~~~p~~---------~dillA~l~k~Cp~~vP~~~~~~~--~~~~e~~~k~lGyk~~~~~-~E~~~~y~  173 (256)
T PF07817_consen  106 FPLARVAVQLWSQHPEF---------GDILLARLHKKCPYLVPKYPGFTC--DQSTEEYRKRLGYKRDDGG-WESEDQYL  173 (256)
T ss_dssp             HHHHHHHHHHHHHSTCH---------HHHHHHHHHHH-GGGG----T-------SSHHHHHHTT--B-TTS-B--HHHHH
T ss_pred             hhHHHHHHHHHHcCCcH---------HHHHHHHHHHcCceeEeecCcccC--CCCHHHHHHHcCCccCCCC-ccchHHHH
Confidence            88999999998887764         3455554333211000    0000  0001111000    00000 01122344


Q ss_pred             hhHHHHHHHHHHHHhccC---------CcHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHHhhhccC
Q 013803          259 RRWLGNIRLIGELYKKKM---------LTERIMHECIKKLLGQYENP-DEEDVEALCILMSTIGEMIDH  317 (436)
Q Consensus       259 rr~lG~IrFIGELFk~~v---------Ls~kII~~cI~~LL~~~~~p-~Ee~IE~Lc~LL~tiG~~Ld~  317 (436)
                      +|+-|.+++-+-+-....         .+..--=..+..+|..  .| .+-....|..+|+.+|..|-.
T Consensus       174 ~Rm~Gi~~lyaAi~~~~~~~~~~~~~p~~~~~~W~wlAr~lN~--~p~~~~~~~lL~~~Le~ag~~l~~  240 (256)
T PF07817_consen  174 KRMTGIIRLYAAIIQTPPPKGQKTSNPHGLEHGWRWLARILNL--PPAPNITATLLHSFLEVAGFRLLQ  240 (256)
T ss_dssp             HHHHHHHHHHHHHHHS---CCCCTT-SS-THHHHHHHHHHHCS---CC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCcCCCCCCCCCcHHHHHHHHHHhCC--CCCcccHHHHHHHHHHHHHHHHHH
Confidence            789999999999987542         2223334556666653  23 466788999999999998863

This protein is localised at the nuclear pore complexes and functions in poly(A)+ RNA export to the cytoplasm []. ; GO: 0016973 poly(A)+ mRNA export from nucleus, 0005643 nuclear pore; PDB: 3PEV_B 3RRN_B 3PEU_B 3RRM_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	436
1hu3_A	260	Middle Domain Of Human Eif4gii Length = 260		4e-35
2vso_E	284	Crystal Structure Of A Translation Initiation Compl		4e-13

>pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii Length = 260

Iteration: 1
 Score =  145 bits (366), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 87/248 (35%), Positives = 127/248 (51%), Gaps = 11/248 (4%)
Query: 139 RGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAG 198
           R  + +L    F +L +QV  + +D    L GV+  +F+KA+ EP+F   YAN    L  
Sbjct: 16  RSILNKLTPQXFNQLXKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANXCRCLVT 75
Query: 199 -ELPDFSEDNEKITFKRLLLNKCXXXXXXXXXXXXXANK-------ADXXXXXXXXXXXX 250
            ++P   +    + F++LLLN+C               K       A             
Sbjct: 76  LKVPXADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDEL 135
Query: 251 XXXXXXXXXXWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMST 310
                      +GNI+ IGEL+K K LTE I H+C+ KLL   +N DEE +E LC L++T
Sbjct: 136 EEAKDKARRRSIGNIKFIGELFKLKXLTEAIXHDCVVKLL---KNHDEESLECLCRLLTT 192
Query: 311 IGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKK 370
           IG+ +D  KAK   D YF++ EK+    K SSR+R  L+D I+LR   W  RR  +GPK 
Sbjct: 193 IGKDLDFEKAKPRXDQYFNQXEKIVKERKTSSRIRFXLQDVIDLRLCNWVSRRADQGPKT 252
Query: 371 IEEVHRDA 378
           IE++H++A
Sbjct: 253 IEQIHKEA 260

>pdb|2VSO|E Chain E, Crystal Structure Of A Translation Initiation Complex Length = 284

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 108/238 (45%), Gaps = 22/238 (9%)
Query: 142 IGRLNAPNFKKLFEQVKAV-NID----NAVTLAGVVSQIFDKALMEPTFCEMYANFFYFL 196
           + +L    F  +  ++ A+ NI     N  TL  V+ QIF KA  EP +  MYA     +
Sbjct: 44  LNKLTLEMFDAISSEILAIANISVWETNGETLKAVIEQIFLKACDEPHWSSMYAQLCGKV 103
Query: 197 AGEL-PDFS-EDNEKITFKRLLLN----KCXXXXXXXXXXXXXANKADXXXXXXXXXXXX 250
             EL PD + E NE  T  +L+L+    +C              N+ D            
Sbjct: 104 VKELNPDITDETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNE-DGTPLEPEMMSEE 162
Query: 251 XXXXXXXXXXWLGNIRLIGELYKKKMLTERIMHECIKKLLGQY-ENPDEEDVEALCILMS 309
                      LG +R IG LY+  +LT ++M EC ++L+    ++P EE +E++  L++
Sbjct: 163 YYAAASAKRRGLGLVRFIGFLYRLNLLTGKMMFECFRRLMKDLTDSPSEETLESVVELLN 222
Query: 310 TIGEMIDHP---------KAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNK 358
           T+GE  +           +  + +D+ F  ++ +    K+SSR++  L D  ELR +K
Sbjct: 223 TVGEQFETDSFRTGQATLEGSQLLDSLFGILDNIIQTAKISSRIKFKLIDIKELRHDK 280

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	436
1hu3_A	260	EIF4GII; heat repeat, translation; 2.37A {Homo sap	2e-70
2vso_E	284	Eukaryotic initiation factor 4F subunit P150; acet	5e-57
2i2o_A	224	EIF4G-like protein; protein structure initiative,	5e-53
3rk6_A	234	Polyadenylate-binding protein-interacting protein;	1e-47
1uw4_B	248	UPF2, regulator of nonsense transcripts 2; nonsens	5e-25

>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Length = 260

 Score =  222 bits (567), Expect = 2e-70
 Identities = 107/248 (43%), Positives = 155/248 (62%), Gaps = 11/248 (4%)

Query: 139 RGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAG 198
           R  + +L    F +L +QV  + +D    L GV+  +F+KA+ EP+F   YAN    L  
Sbjct: 16  RSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVT 75

Query: 199 -ELPDFSEDNEKITFKRLLLNKCQEEFERG-------EREQEEANKADKEGEIKQTEEER 250
            ++P   +    + F++LLLN+CQ+EFE+        E++Q+E   A    E  +  +E 
Sbjct: 76  LKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDEL 135

Query: 251 EEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILMST 310
           EE + KARRR +GNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L++T
Sbjct: 136 EEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLLTT 192

Query: 311 IGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVEGPKK 370
           IG+ +D  KAK  MD YF++MEK+    K SSR+R ML+D I+LR   W  RR  +GPK 
Sbjct: 193 IGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVSRRADQGPKT 252

Query: 371 IEEVHRDA 378
           IE++H++A
Sbjct: 253 IEQIHKEA 260

>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E* Length = 284

 Score =  188 bits (478), Expect = 5e-57
 Identities = 70/282 (24%), Positives = 126/282 (44%), Gaps = 32/282 (11%)

Query: 101 ERNDKKHRNSRDKEIRSDNRGKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAV 160
           +   KK       + +++   K  + ++M++L         + +L    F  +  ++ A+
Sbjct: 12  KFKSKKTEKKLAPDGKTELLDKDEVERKMKSL---------LNKLTLEMFDAISSEILAI 62

Query: 161 -----NIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSED------NEK 209
                   N  TL  V+ QIF KA  EP +  MYA     +  EL     D         
Sbjct: 63  ANISVWETNGETLKAVIEQIFLKACDEPHWSSMYAQLCGKVVKELNPDITDETNEGKTGP 122

Query: 210 ITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIG 269
                 L+ +C  EF++G  ++   N+     E  +   E       A+RR LG +R IG
Sbjct: 123 KLVLHYLVARCHAEFDKGWTDKLPTNEDGTPLE-PEMMSEEYYAAASAKRRGLGLVRFIG 181

Query: 270 ELYKKKMLTERIMHECIKKLLGQY-ENPDEEDVEALCILMSTIGEMIDHP---------K 319
            LY+  +LT ++M EC ++L+    ++P EE +E++  L++T+GE  +           +
Sbjct: 182 FLYRLNLLTGKMMFECFRRLMKDLTDSPSEETLESVVELLNTVGEQFETDSFRTGQATLE 241

Query: 320 AKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNK-WQ 360
             + +D+ F  ++ +    K+SSR++  L D  ELR +K W 
Sbjct: 242 GSQLLDSLFGILDNIIQTAKISSRIKFKLIDIKELRHDKNWN 283

>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio} Length = 224

 Score =  176 bits (447), Expect = 5e-53
 Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 37/228 (16%)

Query: 149 NFKKLFEQV--KAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSED 206
           +F    +++   A+    +V L  V S I D++L +  F        Y +       +  
Sbjct: 15  SFDLETQKLLKTALKDPGSVDLEKVSSVIVDQSLKDQVFSREAGRICYTIVQAEAKQTNG 74

Query: 207 NEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIR 266
           +    F+R LLN+ Q+EF+                        REE R ++ + W+  + 
Sbjct: 75  S---VFRRNLLNRLQQEFK-----------------------AREETRKRSTQEWVCLVS 108

Query: 267 LIGELYKKKMLTERIM-------HECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPK 319
            I  ++    +    M       ++C+ +L       +EE+V+ L + +  IG+ ++   
Sbjct: 109 FICNIFDYLKVNNMPMVALVHPVYDCLFRLAQSDALKNEEEVDCLVLQLHRIGDQLEKMN 168

Query: 320 AKEHMDAYFDRM-EKLSNNMKLSSRVRLMLKDSIELRKNKWQQRRKVE 366
             + MD  F+ + +       LSS  RL+L + +E R   W+     +
Sbjct: 169 -VQLMDELFNLLRDGFLLQEDLSSMGRLLLLEILEFRAGGWKLSDTAQ 215

>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens} Length = 234

 Score =  162 bits (410), Expect = 1e-47
 Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 38/222 (17%)

Query: 149 NFKKLFEQVKAV---NIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSE 205
           +F+   EQ        +     L  +V  I+ +A   P F  M A    +L+  L     
Sbjct: 36  SFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS-- 93

Query: 206 DNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNI 265
             +   F++LLL +C+ E+E                     +++  +     R+R+   +
Sbjct: 94  -PQSGNFRQLLLQRCRTEYEV--------------------KDQAAKGDEVTRKRFHAFV 132

Query: 266 RLIGELYKK--------KMLTERIMHECIKKLLGQY-ENPDEEDVEALCILMSTIGEMID 316
             +GELY          ++    I+   +++LL     NP ++++     L+   G +++
Sbjct: 133 LFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLE 192

Query: 317 ---HPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELR 355
                K K  M+    R+E +  +   S  V+ ML   +ELR
Sbjct: 193 DAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELR 234

>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14 Length = 248

 Score =  101 bits (254), Expect = 5e-25
 Identities = 36/260 (13%), Positives = 91/260 (35%), Gaps = 53/260 (20%)

Query: 144 RLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDF 203
            L+    +K+  Q++ +   +       V       ++     + Y +  + +A  L   
Sbjct: 15  DLSKVTTEKVLRQMRKLPWQDQE-----VKDYVICCMINIWNVK-YNSI-HCVANLLAGL 67

Query: 204 SEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLG 263
               E +     +++   E+   G    +                       K  +R + 
Sbjct: 68  VLYQEDVGIH--VVDGVLEDIRLGMEVNQ----------------------PKFNQRRIS 103

Query: 264 NIRLIGELYKKKMLTERIMHECIKKLL----GQYENPDEED-------VEALCILMSTIG 312
           + + +GELY  +M+   ++   +            +P   D       +  +C ++ T G
Sbjct: 104 SAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDTCG 163

Query: 313 EMIDHPKAKEHMD---AYFDR-------MEKLSNNMKLSSRVRLMLKDSIELRKNKWQQR 362
           +  D   +K  +D    YF R       +E  + +      +  M+ D++EL + K +  
Sbjct: 164 QYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPKIKLC 223

Query: 363 RKV-EGPKKIEEVHRDAAQE 381
             + E  ++++++ R+   +
Sbjct: 224 NSLEESIRQVQDLEREFLIK 243

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	436
1hu3_A	260	EIF4GII; heat repeat, translation; 2.37A {Homo sap	100.0
2vso_E	284	Eukaryotic initiation factor 4F subunit P150; acet	100.0
3rk6_A	234	Polyadenylate-binding protein-interacting protein;	100.0
2i2o_A	224	EIF4G-like protein; protein structure initiative,	100.0
1uw4_B	248	UPF2, regulator of nonsense transcripts 2; nonsens	99.68
1h2v_C	771	80 kDa nuclear CAP binding protein; CAP-binding-co	98.98
4gmj_A	229	CCR4-NOT transcription complex subunit 1; mRNA dec	96.13
4b89_A	249	General negative regulator of transcription subun;	95.88
3pev_B	297	Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, he	89.51
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	86.29

>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14

Probab=100.00  E-value=8.2e-58  Score=446.05  Aligned_cols=248  Identities=42%  Similarity=0.729  Sum_probs=189.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhccccChHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHh-cCCCCCCc
Q 013803          128 RMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAG-ELPDFSED  206 (436)
Q Consensus       128 ~~~~~kl~r~Vk~ILNKLTpenFd~i~~qL~~l~i~~~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~-~lp~~~~~  206 (436)
                      ...+.+++++|++|||||||+||+.|+.+|+++++.+.+.++.||++||+||+.||+|++|||+||..|+. .+|.....
T Consensus         5 ~~~~~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~~~~   84 (260)
T 1hu3_A            5 NIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKP   84 (260)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC-----
T ss_pred             HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcccCC
Confidence            35677899999999999999999999999999999999999999999999999999999999999999987 56755434


Q ss_pred             hhhhHHHHHHHHHHHHHHHhhHHHHHHhhhh-------cchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcH
Q 013803          207 NEKITFKRLLLNKCQEEFERGEREQEEANKA-------DKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTE  279 (436)
Q Consensus       207 ~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~-------~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~  279 (436)
                      +.+..||++||++||.+|++.+......++.       ..+.+..+..+|+++.+.+.|++++|+|+||||||+++|+++
T Consensus        85 ~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~  164 (260)
T 1hu3_A           85 GNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTE  164 (260)
T ss_dssp             ----CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCH
T ss_pred             ccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCH
Confidence            4578899999999999999987542211110       001111223345556667889999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHcCC
Q 013803          280 RIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKW  359 (436)
Q Consensus       280 kII~~cI~~LL~~~~~p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~f~~L~~l~~~~~lS~RIRFmI~dLiDLR~nnW  359 (436)
                      +||++||..||.   +|+|++|||+|.||++||+.|+.+.++..|+.||.+|+.++.+.++|+|+||||+||+|||++||
T Consensus       165 ~i~~~~l~~Ll~---~~~e~~iE~l~~lL~tvG~~L~~~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~dLR~~~W  241 (260)
T 1hu3_A          165 AIMHDCVVKLLK---NHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNW  241 (260)
T ss_dssp             HHHHHHHHHHHH---SCSHHHHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999998   59999999999999999999998777789999999999999999999999999999999999999


Q ss_pred             ccccccCCCCChHHHHHHH
Q 013803          360 QQRRKVEGPKKIEEVHRDA  378 (436)
Q Consensus       360 ~~r~~~~~pkti~eih~ea  378 (436)
                      ++++.+.|||||+|||+||
T Consensus       242 ~~~~~~~~pkti~~i~~ea  260 (260)
T 1hu3_A          242 VSRRADQGPKTIEQIHKEA  260 (260)
T ss_dssp             CC-----------------
T ss_pred             CCCccccCCCcHHHHHhhC
Confidence            9999999999999999997

>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*

Probab=100.00  E-value=5.4e-54  Score=424.04  Aligned_cols=259  Identities=27%  Similarity=0.454  Sum_probs=197.3

Q ss_pred             CccCcCCCcccccchhhhhhhcccccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhccc-----cChHHHHHH
Q 013803           97 NDNHERNDKKHRNSRDKEIRSDNRGKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNI-----DNAVTLAGV  171 (436)
Q Consensus        97 ~~~~~r~~~~~~~~r~~~~r~~~~g~~~~s~~~~~~kl~r~Vk~ILNKLTpenFd~i~~qL~~l~i-----~~~e~L~~V  171 (436)
                      ..+.+||+|+|+..+ .+...+++|..   ++..+.+++++|++|||||||+||+.|+.+|+.+++     .+.+.|+.|
T Consensus         3 ~~s~~~w~P~~~~~~-~~~~~~~~~~~---~~~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~v   78 (284)
T 2vso_E            3 VPSANRWVPKFKSKK-TEKKLAPDGKT---ELLDKDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAV   78 (284)
T ss_dssp             ----CCCCCC----------------C---CCCCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHH
T ss_pred             CCCCCCCCChhhhcc-cccccCCCccc---ccccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHH
Confidence            346789999999664 33334455532   223345899999999999999999999999999876     678999999


Q ss_pred             HHHHHHHhhcCCchhhHHHHHHHHHHhcCCC-CCCc-----hhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhh-
Q 013803          172 VSQIFDKALMEPTFCEMYANFFYFLAGELPD-FSED-----NEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIK-  244 (436)
Q Consensus       172 I~lIfeKAi~Ep~fs~mYA~LC~~L~~~lp~-~~~~-----~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~-  244 (436)
                      |++||+||+.||+|++|||+||..|+..+|. +...     .+...||++||++||++|++.+.+.........+.+.+ 
T Consensus        79 i~~If~kA~~ep~fs~~YA~Lc~~l~~~l~~~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~e~e~  158 (284)
T 2vso_E           79 IEQIFLKACDEPHWSSMYAQLCGKVVKELNPDITDETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNEDGTPLEPEM  158 (284)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHHHHHSCTTCCBCC---CCTHHHHHHHHHHHHHHHHHHCCCSSCC------------
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhh
Confidence            9999999999999999999999999988763 3211     13568999999999999999864321110000011111 


Q ss_pred             ccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhcCC-CCCChhhHHHHHHHHHHHhhhccCcc----
Q 013803          245 QTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQY-ENPDEEDVEALCILMSTIGEMIDHPK----  319 (436)
Q Consensus       245 ~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~cI~~LL~~~-~~p~Ee~IE~Lc~LL~tiG~~Ld~~k----  319 (436)
                      +++|+  |++.+.|++++|+|+||||||+++|++++||++||..||.+. ..|+|++|||||.||+|||+.|+++.    
T Consensus       159 ~~~e~--~~~~~~k~r~lg~i~FIgeLyk~~~l~~~i~~~ci~~LL~~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~  236 (284)
T 2vso_E          159 MSEEY--YAAASAKRRGLGLVRFIGFLYRLNLLTGKMMFECFRRLMKDLTDSPSEETLESVVELLNTVGEQFETDSFRTG  236 (284)
T ss_dssp             CCTTH--HHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTSCC----
T ss_pred             hhhHH--HHHHHHHHHHhhHHHHHHHHHhccCCcHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhccccccc
Confidence            23332  456788999999999999999999999999999999999731 26999999999999999999999753    


Q ss_pred             -----chHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHc-CCcc
Q 013803          320 -----AKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKN-KWQQ  361 (436)
Q Consensus       320 -----~k~~md~~f~~L~~l~~~~~lS~RIRFmI~dLiDLR~n-nW~~  361 (436)
                           ++..|+.||++|+.++.+.++|+||||||+||+|||+| ||++
T Consensus       237 ~~~~~~~~~md~~f~~l~~l~~~~~ls~RirFml~dlidLR~n~~W~~  284 (284)
T 2vso_E          237 QATLEGSQLLDSLFGILDNIIQTAKISSRIKFKLIDIKELRHDKNWNS  284 (284)
T ss_dssp             ----CHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHTSTTC-
T ss_pred             ccchhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcccCCCC
Confidence                 36799999999999998899999999999999999996 9985

>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-48  Score=373.95  Aligned_cols=204  Identities=24%  Similarity=0.402  Sum_probs=180.2

Q ss_pred             HHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHhc---cccChHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCC
Q 013803          129 MRNLKWHIECRGDIGRLN--APNFKKLFEQVKAV---NIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDF  203 (436)
Q Consensus       129 ~~~~kl~r~Vk~ILNKLT--penFd~i~~qL~~l---~i~~~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~~lp~~  203 (436)
                      +|...+.++|++||||||  |+||+.++++|+++   .+++.+.|+.||++||+||++||+||+|||+||+.|+..++..
T Consensus        14 ~~~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi~ep~fs~~YA~LC~~l~~~l~~~   93 (234)
T 3rk6_A           14 GRGSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTIS   93 (234)
T ss_dssp             ----CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHCCCC
T ss_pred             cchHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCCC
Confidence            445679999999999999  99999999999987   7889999999999999999999999999999999999887643


Q ss_pred             CCchhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------c
Q 013803          204 SEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKK--------K  275 (436)
Q Consensus       204 ~~~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~--------~  275 (436)
                      +   +...||++||++||.+|++.++..    +.         +       .+.|+|++|+|+||||||++        +
T Consensus        94 ~---~~~~Fr~lLL~rcQ~eFe~~~~~~----~~---------d-------~~~k~r~lg~i~FIgELf~~l~~~~~~~~  150 (234)
T 3rk6_A           94 P---QSGNFRQLLLQRCRTEYEVKDQAA----KG---------D-------EVTRKRFHAFVLFLGELYLNLEIKGTNGQ  150 (234)
T ss_dssp             C---TTCCHHHHHHHHHHHHHTTHHHHT----SS---------C-------HHHHHHHHHHHHHHHHHHHHCCEECTTSS
T ss_pred             C---chhHHHHHHHHHHHHHHHhhHHhh----hc---------c-------HHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence            3   356899999999999999987431    11         1       13578999999999999998        8


Q ss_pred             CCcHHHHHHHHHHHhcC-CCCCChhhHHHHHHHHHHHhhhccC---ccchHHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 013803          276 MLTERIMHECIKKLLGQ-YENPDEEDVEALCILMSTIGEMIDH---PKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDS  351 (436)
Q Consensus       276 vLs~kII~~cI~~LL~~-~~~p~Ee~IE~Lc~LL~tiG~~Ld~---~k~k~~md~~f~~L~~l~~~~~lS~RIRFmI~dL  351 (436)
                      |++++||+.||.+||.. ..+|+|++|||+|.||++||+.||+   ++++..||.||++|+.++.+.++|+||||||+||
T Consensus       151 ~l~e~I~~~ci~~Ll~~l~~~p~ee~vE~l~~lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~~~~~ls~Rirfml~dl  230 (234)
T 3rk6_A          151 VTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKL  230 (234)
T ss_dssp             EECCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            99999999999998874 2469999999999999999999996   4677899999999999999899999999999999


Q ss_pred             HHHH
Q 013803          352 IELR  355 (436)
Q Consensus       352 iDLR  355 (436)
                      +|||
T Consensus       231 ieLR  234 (234)
T 3rk6_A          231 VELR  234 (234)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            9997

>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}

Probab=100.00  E-value=1.8e-43  Score=338.22  Aligned_cols=195  Identities=23%  Similarity=0.406  Sum_probs=166.0

Q ss_pred             cCCCCCCHHHHHHHHHhcccc--ChHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCCCCchhhhHHHHHHHHHH
Q 013803          143 GRLNAPNFKKLFEQVKAVNID--NAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITFKRLLLNKC  220 (436)
Q Consensus       143 NKLTpenFd~i~~qL~~l~i~--~~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~~~~~~FR~~LL~rc  220 (436)
                      |..+.++|+..+.+++...+.  +...|++||++||+||++||+||+|||+||.+|+...+.   ..+++.||++||++|
T Consensus         9 ~~~~i~~f~~~~q~ll~~~~~~~~~~~l~~vi~lIfeKAi~ep~fs~~YA~LC~~L~~~~~~---~~g~~~Fr~~LLn~c   85 (224)
T 2i2o_A            9 EDYKIQSFDLETQKLLKTALKDPGSVDLEKVSSVIVDQSLKDQVFSREAGRICYTIVQAEAK---QTNGSVFRRNLLNRL   85 (224)
T ss_dssp             CCCCCTTSCHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHH---HHSCCHHHHHHHHHH
T ss_pred             cccchhccCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHccc---cccchHHHHHHHHHH
Confidence            345677888888888776543  455789999999999999999999999999999876532   123556999999999


Q ss_pred             HHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhc----c--CCc-HHHHHHHHHHHhcCC
Q 013803          221 QEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKK----K--MLT-ERIMHECIKKLLGQY  293 (436)
Q Consensus       221 Q~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~----~--vLs-~kII~~cI~~LL~~~  293 (436)
                      |++|++..                       +.+.+.|+|++|+|+||||||++    +  +++ ++||+.|+..||...
T Consensus        86 Q~eFe~~e-----------------------e~~~~~k~r~lG~i~FIgELf~~l~~~~~~~~~l~~i~~~cl~~Ll~~~  142 (224)
T 2i2o_A           86 QQEFKARE-----------------------ETRKRSTQEWVCLVSFICNIFDYLKVNNMPMVALVHPVYDCLFRLAQSD  142 (224)
T ss_dssp             HHHHHTHH-----------------------HHHHHCHHHHHHHHHHHHHHHHHSCBTTBCCGGGHHHHHHHHHHHTSHH
T ss_pred             HHHHHChH-----------------------HHHHHHHHHHhHHHHHHHHHHhHhcccCcchHHHHHHHHHHHHHHhccC
Confidence            99999852                       12346789999999999999999    8  456 889999999999753


Q ss_pred             CCCChhhHHHHHHHHHHHhhhccCccchHHHHHHHHHHHH-HhhCCCCChHHHHHHHHHHHHHHcCCccccc
Q 013803          294 ENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEK-LSNNMKLSSRVRLMLKDSIELRKNKWQQRRK  364 (436)
Q Consensus       294 ~~p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~f~~L~~-l~~~~~lS~RIRFmI~dLiDLR~nnW~~r~~  364 (436)
                      ..|+|++|||+|+||+|||+.||++. +..||.||.+|++ ++++.++|+||||||+||||||++||++++.
T Consensus       143 ~~p~Ee~lEcl~~LL~tvG~~Ld~~~-~~~md~~f~~l~~~l~~~~~ls~RiRfml~dlieLR~~~W~~~~~  213 (224)
T 2i2o_A          143 ALKNEEEVDCLVLQLHRIGDQLEKMN-VQLMDELFNLLRDGFLLQEDLSSMGRLLLLEILEFRAGGWKLSDT  213 (224)
T ss_dssp             HHTSHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHCCCCCCch
Confidence            35899999999999999999999753 4899999999999 7888899999999999999999999999853

>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14

Probab=99.68  E-value=1.9e-15  Score=145.92  Aligned_cols=210  Identities=15%  Similarity=0.271  Sum_probs=147.4

Q ss_pred             HHHHHHHhh-cCCCCCCHHHHHHHHHhccccChHHHHHHHHHHHHHhhcCCchh--hHHHHHHHHHHhcCCCCCCchhhh
Q 013803          134 WHIECRGDI-GRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFC--EMYANFFYFLAGELPDFSEDNEKI  210 (436)
Q Consensus       134 l~r~Vk~IL-NKLTpenFd~i~~qL~~l~i~~~e~L~~VI~lIfeKAi~Ep~fs--~mYA~LC~~L~~~lp~~~~~~~~~  210 (436)
                      ++.-|+.+| -.|+..+.+.++.+|..++-.+.+..+.+++. |-|+-. -.|.  ...|.|...|...-         .
T Consensus         4 ~~~fir~Li~~~L~~~~~~~vlk~lrKl~W~D~e~~~~l~k~-l~~~~~-~ky~nI~~lA~ll~~L~~~~---------~   72 (248)
T 1uw4_B            4 LQEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICC-MINIWN-VKYNSIHCVANLLAGLVLYQ---------E   72 (248)
T ss_dssp             HHHHHHHHHHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHH-HHCGGG-SCGGGHHHHHHHHHHHTTTC---------H
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHcCCCCcHHHHHHHHHH-hcchhh-cccchHHHHHHHHHHHHhhC---------h
Confidence            355667777 78888999999999999988877755444443 333321 2343  34466666665432         2


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHh
Q 013803          211 TFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLL  290 (436)
Q Consensus       211 ~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~cI~~LL  290 (436)
                      .|--.++...-+....+.+..                      ..+..++.++.|+||||||+.+|++..+|++|+-.|+
T Consensus        73 ~~~i~vVD~vlE~Ir~gLE~n----------------------~~~~nQrRia~vkyLgELYny~lv~s~vIf~~Ly~li  130 (248)
T 1uw4_B           73 DVGIHVVDGVLEDIRLGMEVN----------------------QPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFT  130 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC----------------------CGGGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHhcC----------------------cHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            343444444433333222110                      0134567899999999999999999999999999999


Q ss_pred             cCCCC-----CChhh-------HHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHh----------hCCCCChHHHHHH
Q 013803          291 GQYEN-----PDEED-------VEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLS----------NNMKLSSRVRLML  348 (436)
Q Consensus       291 ~~~~~-----p~Ee~-------IE~Lc~LL~tiG~~Ld~~k~k~~md~~f~~L~~l~----------~~~~lS~RIRFmI  348 (436)
                      . +..     |++.+       |.++|.||.|||..++....+..||.|+..++...          +...+|.+|+||+
T Consensus       131 ~-fg~~~~~~~~~~D~p~d~FRIrLvCtLL~tcg~~f~~~~~~kkLd~fL~ffQ~Y~~~K~~~~~~~k~~plP~~vef~l  209 (248)
T 1uw4_B          131 S-FGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMI  209 (248)
T ss_dssp             H-TTCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHH
T ss_pred             c-CCCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhhcccccccccCCCCCHHHHHHH
Confidence            6 222     24555       99999999999999998777889999999998764          2456899999999


Q ss_pred             HHHHHH-HHcCCccccccCCCCChHHHHHH
Q 013803          349 KDSIEL-RKNKWQQRRKVEGPKKIEEVHRD  377 (436)
Q Consensus       349 ~dLiDL-R~nnW~~r~~~~~pkti~eih~e  377 (436)
                      +|++++ |.+-|..+.-++.+..+++|.++
T Consensus       210 ~D~~~~lrp~~~~~~~~eEa~~~v~~le~~  239 (248)
T 1uw4_B          210 SDTLELLRPKIKLCNSLEESIRQVQDLERE  239 (248)
T ss_dssp             HHHHHHHCTTCCCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCcccCCHHHHHHHHHHHHHH
Confidence            999998 76666655555666666666443

>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*

Probab=98.98  E-value=1e-08  Score=113.33  Aligned_cols=194  Identities=13%  Similarity=0.176  Sum_probs=147.6

Q ss_pred             HHHHHHHHhhcCCCC---CCHHHHHHHHHhccccC-hHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCCCCchh
Q 013803          133 KWHIECRGDIGRLNA---PNFKKLFEQVKAVNIDN-AVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNE  208 (436)
Q Consensus       133 kl~r~Vk~ILNKLTp---enFd~i~~qL~~l~i~~-~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~~~  208 (436)
                      ..+..+++++-||+.   .++..-+..|...-..+ ...-..+++.|+.-++..|.++.+||.|...++...|       
T Consensus         7 ~~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~p-------   79 (771)
T 1h2v_C            7 ETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNY-------   79 (771)
T ss_dssp             ---CHHHHHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCH-------
T ss_pred             cHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCCh-------
Confidence            356778889999987   55555555554431112 2334458999999999999999999999999987654       


Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHH
Q 013803          209 KITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKK  288 (436)
Q Consensus       209 ~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~cI~~  288 (436)
                        .|...++.++...|+......                         .++++...++|||+|++.+|+++..+..++..
T Consensus        80 --e~G~~lv~~l~~~f~~~l~~~-------------------------~~~~~k~~lrFLa~L~n~~Vv~~~~il~lL~~  132 (771)
T 1h2v_C           80 --NFGGEFVEAMIRQLKESLKAN-------------------------NYNEAVYLVRFLSDLVNCHVIAAPSMVAMFEN  132 (771)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHTT-------------------------CHHHHHHHHHHHHHHHHTTSBCHHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHHHHHHHHcc-------------------------ChHHHHHHHHHHHHhccCCeecHHHHHHHHHH
Confidence              566888888888888765421                         13467889999999999999999999999999


Q ss_pred             HhcCCC---CCC---hhhHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHhhCC-C----------------CChHHH
Q 013803          289 LLGQYE---NPD---EEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNM-K----------------LSSRVR  345 (436)
Q Consensus       289 LL~~~~---~p~---Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~f~~L~~l~~~~-~----------------lS~RIR  345 (436)
                      |+....   .|.   +..+.|++..|..+|+.|-. +.+..++.+|++++.++.+. +                ...++.
T Consensus       133 Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~G~~L~e-~~~~~l~~lle~~~~yl~~r~~~~~~ll~~~~~~~~~~~~~~l~  211 (771)
T 1h2v_C          133 FVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYE-KKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLD  211 (771)
T ss_dssp             HHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCTTHHHHCSBCCCSSCCCCBHHH
T ss_pred             HHHhhhhcCCcccchhHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcCccchhhhhccccCCCCchhhHHH
Confidence            997421   122   56889999999999999974 34577899999999865322 2                247999


Q ss_pred             HHHHHHHHHHHcCCcc
Q 013803          346 LMLKDSIELRKNKWQQ  361 (436)
Q Consensus       346 FmI~dLiDLR~nnW~~  361 (436)
                      +|+..|..+|+++|..
T Consensus       212 ~L~~ql~~lr~~~w~~  227 (771)
T 1h2v_C          212 CLWAQIQKLKKDRWQE  227 (771)
T ss_dssp             HHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHCCCCC
Confidence            9999999999999975

>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A

Probab=96.13  E-value=0.76  Score=43.54  Aligned_cols=189  Identities=15%  Similarity=0.153  Sum_probs=107.7

Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHhccccChHHHHHHHHH-HHHHhhcCCchhhHHHHHHHHHHhcCCCCCCchhhhH
Q 013803          133 KWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQ-IFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKIT  211 (436)
Q Consensus       133 kl~r~Vk~ILNKLTpenFd~i~~qL~~l~i~~~e~L~~VI~l-IfeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~~~~~~  211 (436)
                      .++.+|..|+|.||++|+++-++++.++--  ++...=++.- |.++|-.||+|-.+|++|+..|..           ..
T Consensus         6 ~v~dki~Fi~NNls~~N~~~k~~elk~~l~--~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~-----------~~   72 (229)
T 4gmj_A            6 NIQEKIAFIFNNLSQSNMTQKVEELKETVK--EEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKN-----------PE   72 (229)
T ss_dssp             HHHHHHHHHHHSCCSSTHHHHHHHHHHHSC--GGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTC-----------HH
T ss_pred             HhhhhheeehhcCCHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhCh-----------HH
Confidence            588999999999999999999999987422  3333345544 455588899999999999988742           12


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhc
Q 013803          212 FKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLG  291 (436)
Q Consensus       212 FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~cI~~LL~  291 (436)
                      |-+.+++.   .|.....-. ..++.      ..+..|    +    ...-+.=.+||.|-.-.=.+...-+-.+..||-
T Consensus        73 l~~~vl~~---T~~~i~~LL-~s~~~------~~~~~e----R----~~LKNLG~WLG~lTLarnkPI~~~~l~~K~LL~  134 (229)
T 4gmj_A           73 FNKMVLNE---TYRNIKVLL-TSDKA------AANFSD----R----SLLKNLGHWLGMITLAKNKPILHTDLDVKSLLL  134 (229)
T ss_dssp             HHHHHHHH---HHHHHHHHH-TSCCC------TTCHHH----H----HHHHHHHHHHHHHTGGGTCCCCTTTCCHHHHHH
T ss_pred             HHHHHHHH---HHHHHHHHH-hhccc------ccchHH----H----HHHHHHHHHHHHHHHccCCCchhcccCHHHHHH
Confidence            33333332   222221110 00000      011112    1    112233356777755431000000011222221


Q ss_pred             C-CC-CC--ChhhHHHHHHHHHHHh--hhccCccchHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHH
Q 013803          292 Q-YE-NP--DEEDVEALCILMSTIG--EMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIEL  354 (436)
Q Consensus       292 ~-~~-~p--~Ee~IE~Lc~LL~tiG--~~Ld~~k~k~~md~~f~~L~~l~~~~~lS~RIRFmI~dLiDL  354 (436)
                      + ++ ..  =..-|-.+|++|..+-  +.+. | ..+++-.++.-|.++-....+.--++|=|+-|..-
T Consensus       135 eay~~g~~rL~~viPFVcKvLe~~~~S~iFk-P-PNPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk~  201 (229)
T 4gmj_A          135 EAYVKGQQELLYVVPFVAKVLESSIRSVVFR-P-PNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKN  201 (229)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHTTTTCTTTS-T-TCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHCCCceEEEeehhHHHHHHhcccCCcCC-C-CChhHHHHHHHHHHHHhCccchhhHHHHHHHHHHH
Confidence            0 00 00  0124556677777773  2333 3 23788899999999988888889999999988763

>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B

Probab=95.88  E-value=0.43  Score=45.70  Aligned_cols=188  Identities=9%  Similarity=0.108  Sum_probs=110.9

Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHhccccChHHHHHHHHH-HHHHhhcCCchhhHHHHHHHHHHhcCCCCCCchhhhH
Q 013803          133 KWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQ-IFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKIT  211 (436)
Q Consensus       133 kl~r~Vk~ILNKLTpenFd~i~~qL~~l~i~~~e~L~~VI~l-IfeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~~~~~~  211 (436)
                      .+..+|..++|.||++|++.-++++.++-  +++...=++.- |.++|..||+|-.+|.+|+..+...           .
T Consensus        33 ~v~dki~Fi~NNls~~Nl~~k~~el~~~l--~~~y~~WFA~YLV~~Ra~~EpN~H~lY~~~l~~l~~~-----------~   99 (249)
T 4b89_A           33 DVVEKVLFVLNNVTLANLNNKVDELKKSL--TPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGSG-----------L   99 (249)
T ss_dssp             HHHHHHHHHHHHCCTTTHHHHHHHHHHHC--CGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCH-----------H
T ss_pred             HHHhhhhhhhhcCChHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHhCCH-----------H
Confidence            38899999999999999999999998753  23455556666 4557999999999999999998532           2


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhc
Q 013803          212 FKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLG  291 (436)
Q Consensus       212 FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~cI~~LL~  291 (436)
                      +-+.+++..   |.....-.   + .+   .+...  |        |...-+.=.+||.|-.-.=-+...-+-.+..||-
T Consensus       100 L~~~vl~~T---~~~i~~LL---~-~~---~i~~~--e--------Rs~LKNLG~WLG~iTLarNkPI~~~~ld~K~LL~  159 (249)
T 4b89_A          100 LHQFMVNVT---LRQLFVLL---S-TK---DEQAI--D--------KKHLKNLASWLGCITLALNKPIKHKNIAFREMLI  159 (249)
T ss_dssp             HHHHHHHHH---HHHHHHHH---T-BS---CGGGS--C--------HHHHHHHHHHHHHHTGGGTCCCCTTTBCHHHHHH
T ss_pred             HHHHHHHHH---HHHHHHHh---h-hc---ccChH--H--------HHHHHHHHHHHhHHHHhcCCCchhcccCHHHHHH
Confidence            222332211   11111100   0 00   01000  1        1222234456777765431000000011222221


Q ss_pred             C-CC-CCChhhHHHHHHHHHHHhh-hccCccchHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHH
Q 013803          292 Q-YE-NPDEEDVEALCILMSTIGE-MIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIEL  354 (436)
Q Consensus       292 ~-~~-~p~Ee~IE~Lc~LL~tiG~-~Ld~~k~k~~md~~f~~L~~l~~~~~lS~RIRFmI~dLiDL  354 (436)
                      + ++ ..=+.-|-.+|++|..+-. .+-.|- .+++-.++.-|.++.....+-.-++|-|+-|..-
T Consensus       160 eay~~g~L~~vIPFVcKvLe~~k~SkiFkPP-NPWt~~IL~lL~Ely~~~~LKlnlkFEIEvL~k~  224 (249)
T 4b89_A          160 EAYKENRLEIVVPFVTKILQRASESKIFKPP-NPWTVGILKLLIELNEKANWKLSLTFEVEVLLKS  224 (249)
T ss_dssp             HHHHHTCHHHHHHHHHHHHGGGTTCSSSSTT-CHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCeEEEeeHHHHHHHhcccCCccCCC-CchHHHHHHHHHHHHhCcchhHhHHHHHHHHHHH
Confidence            0 00 1123467777888887742 222332 3789999999999988888889999999998864

>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*

Probab=89.51  E-value=7.6  Score=37.97  Aligned_cols=203  Identities=11%  Similarity=0.157  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHhhcCCCCC--CHHHHHHHHHhc-cc--cCh----HHHHHHHHHHHHHhh----cCCchhhHHHHHHHHHH
Q 013803          131 NLKWHIECRGDIGRLNAP--NFKKLFEQVKAV-NI--DNA----VTLAGVVSQIFDKAL----MEPTFCEMYANFFYFLA  197 (436)
Q Consensus       131 ~~kl~r~Vk~ILNKLTpe--nFd~i~~qL~~l-~i--~~~----e~L~~VI~lIfeKAi----~Ep~fs~mYA~LC~~L~  197 (436)
                      +-..+|+|+-.+|+||.+  .+..++.+|.++ .-  .+.    -.|..+++.|+..|-    ..|..+.-+|.++..|.
T Consensus        41 ~~~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~~~~~~~~~~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~  120 (297)
T 3pev_B           41 LSRHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLL  120 (297)
T ss_dssp             HHHHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHhhhccchhccccCCHHHHHHHHHHHHHHHhCccCCchHHHHHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHH
Confidence            446899999999999944  667777777664 11  111    134445555555543    46888999999999998


Q ss_pred             hcCCCCCCchhhhHHHHHHHHHHHHHH--HhhH--H-HHHHh-hh----hcchhhhhccHHHHHHHHHHHhhhHHHHHHH
Q 013803          198 GELPDFSEDNEKITFKRLLLNKCQEEF--ERGE--R-EQEEA-NK----ADKEGEIKQTEEEREEKRIKARRRWLGNIRL  267 (436)
Q Consensus       198 ~~lp~~~~~~~~~~FR~~LL~rcQ~eF--e~~~--~-~~~e~-~k----~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrF  267 (436)
                      ...|++         ...|+.+....-  --..  . +.++- ..    .++++..+ +++       ..-+|+-|.+++
T Consensus       121 ~~~p~~---------~dillA~l~k~CP~~vp~~~~~~teegr~~mG~~~~~dg~~E-~~~-------~y~~Rm~Gi~~l  183 (297)
T 3pev_B          121 VQFPEL---------QELFMARLVKKCPFVIGFTCEIDTEKGRQNMGWKRNNENKWE-DNT-------SYDERMGGILSL  183 (297)
T ss_dssp             HHSTTH---------HHHHHHHHHHHCGGGGTCCCCCSSHHHHHHTTCCBCTTSCBC-CHH-------HHHHHHHHHHHH
T ss_pred             HhCccH---------HHHHHHHHhhcCCcccccCCCcccHHHHHHcCCeeCCCCCcc-cHH-------HHHHHHHHHHHH
Confidence            877653         344554433321  0000  0 00000 00    01122111 111       234689999999


Q ss_pred             HHHHHhcc-----------CCcHHHHHHHHHHHhcCCCCCCh---hhHHHHHHHHHHHhhhccC---ccchHHHHHHHHH
Q 013803          268 IGELYKKK-----------MLTERIMHECIKKLLGQYENPDE---EDVEALCILMSTIGEMIDH---PKAKEHMDAYFDR  330 (436)
Q Consensus       268 IGELFk~~-----------vLs~kII~~cI~~LL~~~~~p~E---e~IE~Lc~LL~tiG~~Ld~---~k~k~~md~~f~~  330 (436)
                      -+.+-...           -.+..-.=..+..+|..  .|.+   -...+|..+|+.+|..|-.   .+....|..+...
T Consensus       184 yAAI~~~~~~~~~~~~~~~p~~~~~~W~wLArilN~--~p~~~t~t~~~vL~~~Le~ag~~l~~~Yg~Qf~KlL~~i~~~  261 (297)
T 3pev_B          184 FAIITRLQLPQEFITTTSHPFPIALSWHILARICNT--PLNLITNTHFVILGSWWDAAAVQFLQAYGNQASKLLILIGEE  261 (297)
T ss_dssp             HHHHHHSCCCTTTTTTSCCSSCTHHHHHHHHHHHTS--CGGGCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTH
T ss_pred             HHHHHhCcCcccccccCCCCCCchHHHHHHHHHhCC--CHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998653           12223334455556653  2332   2345888999999998864   1223334333332


Q ss_pred             HHHHhhCCCC--ChHHHHHHHHHH
Q 013803          331 MEKLSNNMKL--SSRVRLMLKDSI  352 (436)
Q Consensus       331 L~~l~~~~~l--S~RIRFmI~dLi  352 (436)
                      +-..+...+.  -.|++-++++..
T Consensus       262 ~~~~l~~~~~~~a~RL~~l~e~~~  285 (297)
T 3pev_B          262 LTSRMAEKKYVGAARLRILLEAWQ  285 (297)
T ss_dssp             HHHHTGGGCCHHHHHHHHHHHHHH
T ss_pred             HhhhhcccCCccHHHHHHHHHHHH
Confidence            2222222222  256666666543

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=86.29  E-value=8.7  Score=40.21  Aligned_cols=170  Identities=16%  Similarity=0.202  Sum_probs=106.3

Q ss_pred             ccccccHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhccc-cChHHHHHHHHHHHHHhhcCCch----hhHHHHHHHH
Q 013803          121 GKRRLSKRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNI-DNAVTLAGVVSQIFDKALMEPTF----CEMYANFFYF  195 (436)
Q Consensus       121 g~~~~s~~~~~~kl~r~Vk~ILNKLTpenFd~i~~qL~~l~i-~~~e~L~~VI~lIfeKAi~Ep~f----s~mYA~LC~~  195 (436)
                      +.-.|+++ ...-+...++.+|-.+|.+.|..+.+=|-.+.+ .+....++++++|.++|=.+..|    .....++...
T Consensus       166 ~~~~l~~E-~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C  244 (507)
T 3u0r_A          166 PDEVLTKE-VEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQC  244 (507)
T ss_dssp             CTTTSCHH-HHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHH
T ss_pred             chhhccHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHH
Confidence            33345433 344577888889999999999888855555654 56777889999999998654444    4677888888


Q ss_pred             HHhcCCCCCCchhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Q 013803          196 LAGELPDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKK  275 (436)
Q Consensus       196 L~~~lp~~~~~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~  275 (436)
                      +...+|-+......+.|-.++.++.--.|.....       . .++      +          ...+-.++.++|+--+-
T Consensus       245 ~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e-------~-~~~------~----------~~kL~LLK~lAE~s~~~  300 (507)
T 3u0r_A          245 TRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTT-------P-VEG------L----------DIQLEVLKLLAEMSSFC  300 (507)
T ss_dssp             HHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCC-------C---C------C----------CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccCCChHHHHHHHHHhhccchhhccc-------c-ccc------h----------HHHHHHHHHHHHHccCC
Confidence            8888887765445666777665543222222110       0 000      0          02346788899998764


Q ss_pred             C-Cc--HHHHHHHHHHHhcCCC-CCCh----------------hhHHHHHHHHHHHhhhc
Q 013803          276 M-LT--ERIMHECIKKLLGQYE-NPDE----------------EDVEALCILMSTIGEMI  315 (436)
Q Consensus       276 v-Ls--~kII~~cI~~LL~~~~-~p~E----------------e~IE~Lc~LL~tiG~~L  315 (436)
                      - +.  ...+-.+...|+.... .|+|                -.||||.-.|.+.|+..
T Consensus       301 ~~~e~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~  360 (507)
T 3u0r_A          301 GDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKL  360 (507)
T ss_dssp             CCCTTHHHHHHHHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTC
T ss_pred             CccchHHHHHHHHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhC
Confidence            3 33  3345455555554321 2321                25899999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	436
d1hu3a_	243	a.118.1.14 (A:) Eukaryotic initiation factor eIF4G	6e-58
d1uw4b_	248	a.118.1.14 (B:) Regulator of nonsense transcripts	2e-40
d1h2vc1	262	a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-bin	3e-05

>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  188 bits (478), Expect = 6e-58
 Identities = 96/231 (41%), Positives = 139/231 (60%), Gaps = 11/231 (4%)

Query: 137 ECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFL 196
           + R  + +L    F +L +QV  + +D    L GV+  +F+KA+ EP+F   YAN    L
Sbjct: 14  KVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCL 73

Query: 197 AGELPDFSE-DNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGE-------IKQTEE 248
                  ++     + F++LLLN+CQ+EFE+ + + +   K  KE E         +  +
Sbjct: 74  VTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHD 133

Query: 249 EREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDVEALCILM 308
           E EE + KARRR +GNI+ IGEL+K KMLTE IMH+C+ KLL   +N DEE +E LC L+
Sbjct: 134 ELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLL---KNHDEESLECLCRLL 190

Query: 309 STIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNKW 359
           +TIG+ +D  KAK  MD YF++MEK+    K SSR+R ML+D I+LR   W
Sbjct: 191 TTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNW 241

>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 248

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Regulator of nonsense transcripts 2, UPF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (360), Expect = 2e-40
 Identities = 33/264 (12%), Positives = 86/264 (32%), Gaps = 53/264 (20%)

Query: 142 IGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELP 201
              L+    +K+  Q++ +   +      V+  + +   ++       AN    L     
Sbjct: 13  YKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQE 72

Query: 202 DFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRW 261
           D             +++   E+   G                          + K  +R 
Sbjct: 73  DVGIH---------VVDGVLEDIRLGME----------------------VNQPKFNQRR 101

Query: 262 LGNIRLIGELYKKKMLTERIMHECIKKLLGQYENP-----------DEEDVEALCILMST 310
           + + + +GELY  +M+   ++   +        NP               +  +C ++ T
Sbjct: 102 ISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDT 161

Query: 311 IGEMIDHPKAKEHMDAYF----------DRMEKLSNNMKLSSRVRLMLKDSIELRKNKWQ 360
            G+  D   +K  +D +             +E  + +      +  M+ D++EL + K +
Sbjct: 162 CGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPKIK 221

Query: 361 QRRKV-EGPKKIEEVHRDAAQERQ 383
               + E  ++++++ R+   +  
Sbjct: 222 LCNSLEESIRQVQDLEREFLIKLG 245

>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: CBP80, 80KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 28/249 (11%), Positives = 68/249 (27%), Gaps = 67/249 (26%)

Query: 142 IGRLNAPNFKKLFEQVKAVNIDNAVTLAG-VVSQIFDKALMEPTFCEMYANFFYFLAGEL 200
           +G  +A + +   E +  V   +       ++  +   A + P    +Y      L    
Sbjct: 10  VGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARN 69

Query: 201 PDFSEDNEKITFKRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRR 260
            +F             +     +            ++ K     +               
Sbjct: 70  YNFGG---------EFVEAMIRQL----------KESLKANNYNEA-------------- 96

Query: 261 WLGNIRLIGELYKKKMLTERIMHECIKKLLGQYENPDEEDV-------------EALCIL 307
            +  +R + +L    ++    M    +  +       EEDV              +L  +
Sbjct: 97  -VYLVRFLSDLVNCHVIAAPSMVAMFENFV---SVTQEEDVPQVRRDWYVYAFLSSLPWV 152

Query: 308 MSTIGEMIDHPKAKEHM----DAYFDRMEKLSNNM----------KLSSRVRLMLKDSIE 353
              + E        + +    ++Y  R +K    M               +  +     +
Sbjct: 153 GKELYE--KKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQK 210

Query: 354 LRKNKWQQR 362
           L+K++WQ+R
Sbjct: 211 LKKDRWQER 219

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	436
d1hu3a_	243	Eukaryotic initiation factor eIF4G {Human (Homo sa	100.0
d1uw4b_	248	Regulator of nonsense transcripts 2, UPF2 {Human (	100.0
d1h2vc1	262	CBP80, 80KDa nuclear cap-binding protein {Human (H	99.34

>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-47  Score=360.29  Aligned_cols=232  Identities=41%  Similarity=0.695  Sum_probs=189.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhccccChHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCCCC-
Q 013803          127 KRMRNLKWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSE-  205 (436)
Q Consensus       127 ~~~~~~kl~r~Vk~ILNKLTpenFd~i~~qL~~l~i~~~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~-  205 (436)
                      +..+.++++++|+++|||||++||+.|+++|+++++++.+.++.+|+.||+||+.||+|+++||+||..|....+.... 
T Consensus         4 ~~~~~~~l~r~v~~lLNKLt~~n~~~i~~ei~~l~~~~~~~l~~~v~~I~~kai~e~~f~~~YA~Lc~~l~~~~~~~~~~   83 (243)
T d1hu3a_           4 ENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADK   83 (243)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC----
T ss_pred             hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHhcCccccc
Confidence            3456778999999999999999999999999999999999999999999999999999999999999999987765532 


Q ss_pred             chhhhHHHHHHHHHHHHHHHhhHHHHHHhhhhc-------chhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCc
Q 013803          206 DNEKITFKRLLLNKCQEEFERGEREQEEANKAD-------KEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLT  278 (436)
Q Consensus       206 ~~~~~~FR~~LL~rcQ~eFe~~~~~~~e~~k~~-------ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs  278 (436)
                      .+.+..|++.||++||++|++............       ...+......|.++.+.+.|++.+|+++||||||++++++
T Consensus        84 ~~~~~~F~~~Ll~~~q~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~k~~~~g~i~figeLy~~~~v~  163 (243)
T d1hu3a_          84 PGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLT  163 (243)
T ss_dssp             -----CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSC
T ss_pred             cccchHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHccccch
Confidence            345678999999999999998764321111100       0001112233444556678899999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHcC
Q 013803          279 ERIMHECIKKLLGQYENPDEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNMKLSSRVRLMLKDSIELRKNK  358 (436)
Q Consensus       279 ~kII~~cI~~LL~~~~~p~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~f~~L~~l~~~~~lS~RIRFmI~dLiDLR~nn  358 (436)
                      .++|++|+..|+.   +|+|++|||+|.||+++|+.|+.+..+..|+.||++|+.+..+.++|+|+||||+||+|||++|
T Consensus       164 ~~~i~~~l~~Ll~---~~~e~~ie~l~~lL~~~G~~L~~~~~~~~~~~~~~~l~~~~~~~~~s~Rirfml~~l~elR~~~  240 (243)
T d1hu3a_         164 EAIMHDCVVKLLK---NHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCN  240 (243)
T ss_dssp             HHHHHHHHHHHHH---SCSHHHHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999998   5999999999999999999999877788999999999999999999999999999999999999


Q ss_pred             Ccc
Q 013803          359 WQQ  361 (436)
Q Consensus       359 W~~  361 (436)
                      |++
T Consensus       241 W~s  243 (243)
T d1hu3a_         241 WVS  243 (243)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            984

>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Regulator of nonsense transcripts 2, UPF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-34  Score=278.50  Aligned_cols=217  Identities=14%  Similarity=0.246  Sum_probs=182.4

Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHhccccChHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCCCCchhhhHH
Q 013803          133 KWHIECRGDIGRLNAPNFKKLFEQVKAVNIDNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITF  212 (436)
Q Consensus       133 kl~r~Vk~ILNKLTpenFd~i~~qL~~l~i~~~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~~~~~~F  212 (436)
                      ++-+++  |+|+||+.||+.++.+|.+++++|.+..+.+++.||+++..++.|+.+||.||+.|....         ..|
T Consensus         6 ~flr~l--i~n~Ls~~n~~~i~~~i~kl~~~n~e~~~~li~~i~~~~~~~~~~i~~yA~l~a~L~~~~---------~~f   74 (248)
T d1uw4b_           6 EYVRKL--LYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQ---------EDV   74 (248)
T ss_dssp             HHHHHH--HHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHTTTC---------HHH
T ss_pred             HHHHHH--HHhhCCHhHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhhcCchhHHHHHHHHHHHHHHHh---------HHH
Confidence            344444  799999999999999999999999999999999999999999999999999999997754         358


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhcC
Q 013803          213 KRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQ  292 (436)
Q Consensus       213 R~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~cI~~LL~~  292 (436)
                      ...++++|+++|.......                      ..+.+++.+|+|+||||||+++|++.++|++|+..|+..
T Consensus        75 ~~~~id~l~e~f~~~~e~~----------------------~~~~~~r~~~~v~figeLy~~~~v~~~~i~~~l~~Ll~~  132 (248)
T d1uw4b_          75 GIHVVDGVLEDIRLGMEVN----------------------QPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSF  132 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHC----------------------CGGGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHh----------------------hHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHhc
Confidence            8999999999998776421                      013456789999999999999999999999999999963


Q ss_pred             CC---------CCChh--hHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHH----------hhCCCCChHHHHHHHHH
Q 013803          293 YE---------NPDEE--DVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKL----------SNNMKLSSRVRLMLKDS  351 (436)
Q Consensus       293 ~~---------~p~Ee--~IE~Lc~LL~tiG~~Ld~~k~k~~md~~f~~L~~l----------~~~~~lS~RIRFmI~dL  351 (436)
                      ..         +|.++  .|||+|.||.|||+.++.+..+..|+.||..++..          ..+.++|+||+|||+||
T Consensus       133 ~~~~~~~~~~~d~~~d~~rIe~l~~lL~t~G~~l~~~~~~~~l~~~~~~fq~y~~~~~~~~~~~~~~~lp~ri~f~i~dl  212 (248)
T d1uw4b_         133 GVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDT  212 (248)
T ss_dssp             TCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHHHHH
T ss_pred             CCCcccccccCCCCcchhHHHHHHHHHHHHhHHhcCccchhhHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence            21         22222  39999999999999999877777888877655532          23567999999999999


Q ss_pred             HHHHHcCCccccc-cCCCCChHHHHHHHHHHH
Q 013803          352 IELRKNKWQQRRK-VEGPKKIEEVHRDAAQER  382 (436)
Q Consensus       352 iDLR~nnW~~r~~-~~~pkti~eih~ea~~e~  382 (436)
                      +|+|+++|+.... +++|+++++||++...+-
T Consensus       213 l~lr~~~wk~~~~~~E~~~~l~ei~k~~~~~l  244 (248)
T d1uw4b_         213 LELLRPKIKLCNSLEESIRQVQDLEREFLIKL  244 (248)
T ss_dssp             HHHHCTTCCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCcCCChhhhHHHHHHHHHHHHHhh
Confidence            9999999986554 799999999999987653

>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: CBP80, 80KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=9.5e-12  Score=118.84  Aligned_cols=191  Identities=13%  Similarity=0.194  Sum_probs=144.7

Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHhcc---c-cChHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhcCCCCCCchhhhHH
Q 013803          137 ECRGDIGRLNAPNFKKLFEQVKAVN---I-DNAVTLAGVVSQIFDKALMEPTFCEMYANFFYFLAGELPDFSEDNEKITF  212 (436)
Q Consensus       137 ~Vk~ILNKLTpenFd~i~~qL~~l~---i-~~~e~L~~VI~lIfeKAi~Ep~fs~mYA~LC~~L~~~lp~~~~~~~~~~F  212 (436)
                      ++++++|||+..|..++..+|..+.   . +-.+.-..+++.|++-++..|.++.+||.|+..+...         ...|
T Consensus         2 rl~~LI~rige~~~~s~~~~ie~L~~~l~~~l~~~~~~il~~l~~~~~~~P~k~~~yA~Lv~llN~~---------~~e~   72 (262)
T d1h2vc1           2 HLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNAR---------NYNF   72 (262)
T ss_dssp             HHHHHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTT---------CHHH
T ss_pred             hHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHccC---------cHHH
Confidence            4688999999877767666665542   1 2234556689999999999999999999999887654         3468


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhhhhcchhhhhccHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCcHHHHHHHHHHHhcC
Q 013803          213 KRLLLNKCQEEFERGEREQEEANKADKEGEIKQTEEEREEKRIKARRRWLGNIRLIGELYKKKMLTERIMHECIKKLLGQ  292 (436)
Q Consensus       213 R~~LL~rcQ~eFe~~~~~~~e~~k~~ee~e~~~s~eE~e~~~~k~Krr~lG~IrFIGELFk~~vLs~kII~~cI~~LL~~  292 (436)
                      ...++.++...|+......                         ..+++.+.++|||+||+.++++...|.+|+..|+..
T Consensus        73 g~~~l~~~~~~f~~~l~~~-------------------------~~~~~~~llrFla~L~n~~Vv~~~~i~~ll~~ll~~  127 (262)
T d1h2vc1          73 GGEFVEAMIRQLKESLKAN-------------------------NYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSV  127 (262)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-------------------------CHHHHHHHHHHHHHHHHTTSBCHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHhC-------------------------CHHHHHHHHHHHHHHccCCCCcHhHHHHHHHHHHHH
Confidence            8899999999998765421                         124577899999999999999999999999999963


Q ss_pred             C---CCC---ChhhHHHHHHHHHHHhhhccCccchHHHHHHHHHHHHHhhCC-----------------CCChHHHHHHH
Q 013803          293 Y---ENP---DEEDVEALCILMSTIGEMIDHPKAKEHMDAYFDRMEKLSNNM-----------------KLSSRVRLMLK  349 (436)
Q Consensus       293 ~---~~p---~Ee~IE~Lc~LL~tiG~~Ld~~k~k~~md~~f~~L~~l~~~~-----------------~lS~RIRFmI~  349 (436)
                      .   +.|   .|.-+.|+...|--+|+.|.+ +.+..++.+++.++..++..                 .....+-.+..
T Consensus       128 ~~e~~~~~~~~d~~~~~vL~~LP~~g~~l~~-~~~~~~~~ll~~i~~y~~~r~~~~~~ll~~~~~~~~~~~~~~l~~l~~  206 (262)
T d1h2vc1         128 TQEEDVPQVRRDWYVYAFLSSLPWVGKELYE-KKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWA  206 (262)
T ss_dssp             GGCSSCCHHHHHHHHHHHHTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCTTHHHHCSBCCCSSCCCCBHHHHHHH
T ss_pred             HhhccCCchhHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhccccchhhhhccccCCCCcHHHHHHHHHH
Confidence            2   112   134577777778889999864 23466888888887654221                 12368889999


Q ss_pred             HHHHHHHcCCccc
Q 013803          350 DSIELRKNKWQQR  362 (436)
Q Consensus       350 dLiDLR~nnW~~r  362 (436)
                      .|..+|+++|...
T Consensus       207 qi~~l~~~~w~~~  219 (262)
T d1h2vc1         207 QIQKLKKDRWQER  219 (262)
T ss_dssp             HHHHHHHTTTCCS
T ss_pred             HHHHHHhcCCchh
Confidence            9999999999865