Citrus Sinensis ID: 013820

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430------

MASVPSPKILQFAVQSRSMSANYLLFSSPSQPWPCSQKLRNASLFPIIVKVSSKVKCLTESTDEDRLSESEAVDDDVDGVREDTKVHVKRPQRTASSSSDSLSLGIREPVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILLNLGSLRAITMQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNGSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEMLLENYLQRCESCHGQSERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAFWLTTAGIIVGAVMAFLPHVLVSEG

ccccccccEEEccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEHHHHHHHcccccccccccccccccccccccEEEEccEEEEEcccEEEEEEcccEEEEEccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcc

ccccccccEEEEccccccccHHHHEcccccccccHHHHHcccccccEEEcccHHHHHcccccHHHHHcccccccccccccccccHHHHccccccccccHHHHHHHccccEEEEEEEccccEEEcccccHHHHHHHccccHHHHHHccccccccccccEEEEcccEEEEEHHHHEEEEcccEEEEEccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccccccccccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccc

masvpspkiLQFAVQSRSMSAnyllfsspsqpwpcsqklrnaslFPIIVKVSSKvkcltestdedrlseseavdddvdgvredtkvhvkrpqrtassssdslslgirepvYEVVEVKsngvvstrkINRRQLlkssglrprdirsidpslfltnsmpslLVREHAILLNLGSLRAITMQERVFIFDynrkggqafidtllprlnprnlngspcmPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICImgknctlrrgnddvecsvplEKQIAEEEEEEIEMLLENYLQRCESCHGQSERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAFWLTTAGIIVGAVMAFLPHVLVSEG

masvpspkILQFAVQSRSMSANYLLFSSPSQPWPCSQKLRNASLFPIIVKVSSKVKCLtestdedrlseseavdddvdgvredtkvhvkrpqrtassssdslslgirepvyevvevksngvvstrkinrrqllkssglrprdirsidPSLFLTNSMPSLLVREHAILLNLGSLRAITMQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNGSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGknctlrrgnddvecSVPLEKQIAEEEEEEIEMLLENYLQRCESCHGQSERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAFWLTTAGIIVGAVMAFLPHVLVSEG

MASVPSPKILQFAVQSRSMSANYLLFSSPSQPWPCSQKLRNASLFPIIVKVSSKVKCLTESTDEDRLSESEAVDDDVDGVREDTKVHVKRPQRTAssssdslslGIREPVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILLNLGSLRAITMQERVFIFDYNRKGGQAFIDTllprlnprnlnGSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAeeeeeeiemlleNYLQRCESCHGQSERLLDSAKEMEDSIAVNlssrrlevsrvelllQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAFWLTTAGIIVGAVMAFLPHVLVSEG

********************ANYLLFS****PWPCSQKLRNASLFPIIVKVSSKVKCL***********************************************IREPVYEVVEVKSNGVVSTRKI****************RSIDPSLFLTNSMPSLLVREHAILLNLGSLRAITMQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNGSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGKNCTLRRGNDDVECSVPL***********IEMLLENYLQRCESC******************AVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAFWLTTAGIIVGAVMAFLPHVLV***

**************************************************************************************************************YEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILLNLGSLRAITMQERVFIFDYNRKGGQAFIDTLLPRLN********CMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGKNC*******************AEEEEEEIEMLLENYLQRCESCHGQSERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAFWLTTAGIIVGAVMAFLPHVLVSEG

MASVPSPKILQFAVQSRSMSANYLLFSSPSQPWPCSQKLRNASLFPIIVKVSSKVKC*****************DDVDGVRE********************SLGIREPVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILLNLGSLRAITMQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNGSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEMLLENYLQRCESCHGQSERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAFWLTTAGIIVGAVMAFLPHVLVSEG

******PKILQFAVQSRSMSANYLLFSSPSQPWPCSQKLRNASLFPIIVKVSSKV*CL*****************************************DSLSLGIREPVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILLNLGSLRAITMQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNGSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGK*********************AEEEEEEIEMLLENYLQRCESCHGQSERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAFWLTTAGIIVGAVMAFLPHVLVSE*

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiii

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MASVPSPKILQFAVQSRSMSANYLLFSSPSQPWPCSQKLRNASLFPIIVKVSSKVKCLTESTDEDRLSESEAVDDDVDGVREDTKVHVKRPQRTASSSSDSLSLGIREPVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILLNLGSLRAITMQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNGSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGKNCTLRRGNDDVECSVPLExxxxxxxxxxxxxxxxxxxxxCESCHGQSERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAFWLTTAGIIVGAVMAFLPHVLVSEG

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		436	2.2.26 [Sep-21-2011]
Q058N4		459	Magnesium transporter MRS	yes	no	0.745	0.708	0.849	1e-154
Q9AUK4		474	Magnesium transporter MRS	yes	no	0.795	0.732	0.772	1e-148
B8APK3		474	Magnesium transporter MRS	N/A	no	0.795	0.732	0.772	1e-148
Q6C8H7		455	Mitochondrial inner membr	yes	no	0.690	0.661	0.271	4e-26
Q759B8		423	Mitochondrial inner membr	yes	no	0.626	0.645	0.274	4e-24
Q4WCV3		597	Mitochondrial inner membr	yes	no	0.883	0.644	0.258	2e-23
Q02783		413	Mitochondrial inner membr	yes	no	0.623	0.658	0.280	2e-22
Q7SFQ9		547	Mitochondrial inner membr	N/A	no	0.743	0.592	0.270	2e-22
Q6CIB3		397	Mitochondrial inner membr	yes	no	0.628	0.690	0.297	3e-22
Q4I298		498	Mitochondrial inner membr	yes	no	0.683	0.598	0.274	3e-22

>sp\|Q058N4\|MRS2B_ARATH Magnesium transporter MRS2-11, chloroplastic OS=Arabidopsis thaliana GN=MRS2-11 PE=1 SV=1	Back alignment and function desciption

 Score =  546 bits (1407), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 276/325 (84%), Positives = 304/325 (93%)

Query: 104 LGIREPVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVRE 163
           LGIREPVYEVVEVK+ G +STRKINRRQLLKSSGLRPRDIRS+DPSLF+TNS+PSLLVRE
Sbjct: 123 LGIREPVYEVVEVKATGAISTRKINRRQLLKSSGLRPRDIRSVDPSLFMTNSVPSLLVRE 182

Query: 164 HAILLNLGSLRAITMQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNGSPCMPFMIEAVEA 223
           HAILLNLGSLRAI M++RV IFDYNR+GG+AF+DTL+PRLNPR++NG P MPF +EAVE+
Sbjct: 183 HAILLNLGSLRAIAMRDRVLIFDYNRRGGRAFVDTLMPRLNPRSMNGGPSMPFELEAVES 242

Query: 224 ALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQML 283
           AL+SR+QRLEQRLM IEPRVQ LLEVLPNRLTADILE+LRISKQ LVEL SRAGALRQML
Sbjct: 243 ALISRIQRLEQRLMDIEPRVQALLEVLPNRLTADILEELRISKQRLVELGSRAGALRQML 302

Query: 284 LDLLEDPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEMLLENYLQRCES 343
           LDLLEDPHEIRRICIMG+NCTLRRG+DD+EC++P +K IAEEEEEEIEMLLENYLQRCES
Sbjct: 303 LDLLEDPHEIRRICIMGRNCTLRRGDDDLECTLPSDKLIAEEEEEEIEMLLENYLQRCES 362

Query: 344 CHGQSERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKS 403
           CHGQ+ERLLDSAKEMEDSIAVNLSSRRLEVSR ELLLQVG FCVAVGALIAGIFGMNL+S
Sbjct: 363 CHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRFELLLQVGTFCVAVGALIAGIFGMNLRS 422

Query: 404 YLEEHVFAFWLTTAGIIVGAVMAFL 428
           YLEE   AFWLTT GII+GA +AF 
Sbjct: 423 YLEEQASAFWLTTGGIIIGAAVAFF 447

High-affinity magnesium transporter that mediates the influx of magnesium in chloroplast.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9AUK4\|MRS2A_ORYSJ Magnesium transporter MRS2-A, chloroplastic OS=Oryza sativa subsp. japonica GN=MRS2-A PE=2 SV=1	Back alignment and function description

>sp\|B8APK3\|MRS2A_ORYSI Magnesium transporter MRS2-A, chloroplastic OS=Oryza sativa subsp. indica GN=MRS2-A PE=3 SV=1	Back alignment and function description

>sp\|Q6C8H7\|LPE10_YARLI Mitochondrial inner membrane magnesium transporter LPE10 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=LPE10 PE=3 SV=1	Back alignment and function description

>sp\|Q759B8\|MRS2_ASHGO Mitochondrial inner membrane magnesium transporter MRS2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MRS2 PE=3 SV=1	Back alignment and function description

>sp\|Q4WCV3\|MRS2_ASPFU Mitochondrial inner membrane magnesium transporter mrs2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=mrs2 PE=3 SV=1	Back alignment and function description

>sp\|Q02783\|LPE10_YEAST Mitochondrial inner membrane magnesium transporter MFM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MFM1 PE=1 SV=1	Back alignment and function description

>sp\|Q7SFQ9\|MRS2_NEUCR Mitochondrial inner membrane magnesium transporter mrs2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mrs2 PE=3 SV=1	Back alignment and function description

>sp\|Q6CIB3\|LPE10_KLULA Mitochondrial inner membrane magnesium transporter LPE10 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=LPE10 PE=3 SV=1	Back alignment and function description

>sp\|Q4I298\|MRS2_GIBZE Mitochondrial inner membrane magnesium transporter MRS2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=MRS2 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		436
225436387		446	PREDICTED: magnesium transporter MRS2-A,	0.972	0.950	0.747	1e-174
297734870		488	unnamed protein product [Vitis vinifera]	0.972	0.868	0.747	1e-174
449443384		449	PREDICTED: magnesium transporter MRS2-11	0.905	0.879	0.757	1e-162
356565729		456	PREDICTED: magnesium transporter MRS2-11	0.963	0.921	0.712	1e-157
356541972		457	PREDICTED: magnesium transporter MRS2-11	0.963	0.919	0.701	1e-156
12007447		459	magnesium transporter protein [Arabidops	0.745	0.708	0.849	1e-153
18420608		459	magnesium transporter MRS2-11 [Arabidops	0.745	0.708	0.849	1e-153
297808275		456	hypothetical protein ARALYDRAFT_489136 [	0.979	0.936	0.698	1e-151
357118950		445	PREDICTED: magnesium transporter MRS2-A,	0.793	0.777	0.772	1e-147
326508468		435	predicted protein [Hordeum vulgare subsp	0.759	0.760	0.809	1e-147

>gi\|225436387\|ref\|XP_002271504.1\| PREDICTED: magnesium transporter MRS2-A, chloroplastic [Vitis vinifera]	Back alignment and taxonomy information

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 326/436 (74%), Positives = 368/436 (84%), Gaps = 12/436 (2%)

Query: 1   MASVPSPKILQFAVQSRS--------MSANYLLFSSPSQPWPCSQKLRNASLFPIIVKVS 52
           +A   SP +LQF V S +        ++      SS   P+P S K  N+ +FPI V+  
Sbjct: 3   LAPSSSPHLLQFPVSSPAHRLLLFSDLTCATFFRSSWPPPFPISLKKANSFVFPISVR-- 60

Query: 53  SKVKCLTESTDEDRLSESEAVDDDVDGVREDTKVHVKRPQRTASSSSDSLSLGIREPVYE 112
            + KC ++ST+ED LS+SE      D  R  +       QR A+SS+DSLSLGIREPVYE
Sbjct: 61  -REKCFSKSTEEDLLSDSETQTGGNDD-RPASVATTGGSQRIAASSTDSLSLGIREPVYE 118

Query: 113 VVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILLNLGS 172
           VVEVKS+G VSTRKINRRQLLKSSGLRPRDIRS+DPSL+LTNSMPSL+VREHAILLNLGS
Sbjct: 119 VVEVKSDGKVSTRKINRRQLLKSSGLRPRDIRSVDPSLWLTNSMPSLVVREHAILLNLGS 178

Query: 173 LRAITMQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNGSPCMPFMIEAVEAALLSRVQRL 232
           LRAI MQE VFIFDYNRKGG+AF+D+LLPRLNP+N+NG P MPF +E VEAALLSR+QRL
Sbjct: 179 LRAIAMQESVFIFDYNRKGGKAFMDSLLPRLNPKNMNGGPSMPFELEVVEAALLSRIQRL 238

Query: 233 EQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHE 292
           EQ+LM +EPRVQ LLEVLPNRLTADILEQLR+SKQTLVEL SRAGAL+QMLLDLLEDPHE
Sbjct: 239 EQKLMDLEPRVQALLEVLPNRLTADILEQLRLSKQTLVELGSRAGALKQMLLDLLEDPHE 298

Query: 293 IRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEMLLENYLQRCESCHGQSERLL 352
           IRR+CIMGKNCTL +GN+++ECSVPLEKQIAEEEEEEIEMLLENYLQRCESCHGQ+ERLL
Sbjct: 299 IRRMCIMGKNCTLVKGNENMECSVPLEKQIAEEEEEEIEMLLENYLQRCESCHGQAERLL 358

Query: 353 DSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAF 412
           DSA+EMEDSIAVNLSSRRLEVSRVELLLQVG FC+AVGAL+AGIFGMNLKSYLEEH FAF
Sbjct: 359 DSAREMEDSIAVNLSSRRLEVSRVELLLQVGTFCIAVGALVAGIFGMNLKSYLEEHAFAF 418

Query: 413 WLTTAGIIVGAVMAFL 428
           WLTTAGIIVGAV+AF 
Sbjct: 419 WLTTAGIIVGAVVAFF 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297734870\|emb\|CBI17104.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449443384\|ref\|XP_004139457.1\| PREDICTED: magnesium transporter MRS2-11, chloroplastic-like [Cucumis sativus] gi\|449501631\|ref\|XP_004161422.1\| PREDICTED: magnesium transporter MRS2-11, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356565729\|ref\|XP_003551090.1\| PREDICTED: magnesium transporter MRS2-11, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|356541972\|ref\|XP_003539446.1\| PREDICTED: magnesium transporter MRS2-11, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|12007447\|gb\|AAG45213.1\|AF322255_1 magnesium transporter protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|18420608\|ref\|NP_568424.1\| magnesium transporter MRS2-11 [Arabidopsis thaliana] gi\|122163919\|sp\|Q058N4.1\|MRS2B_ARATH RecName: Full=Magnesium transporter MRS2-11, chloroplastic; AltName: Full=Magnesium Transporter 10; Short=AtMGT10; Flags: Precursor gi\|115646791\|gb\|ABJ17119.1\| At5g22830 [Arabidopsis thaliana] gi\|332005702\|gb\|AED93085.1\| magnesium transporter MRS2-11 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297808275\|ref\|XP_002872021.1\| hypothetical protein ARALYDRAFT_489136 [Arabidopsis lyrata subsp. lyrata] gi\|297317858\|gb\|EFH48280.1\| hypothetical protein ARALYDRAFT_489136 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357118950\|ref\|XP_003561210.1\| PREDICTED: magnesium transporter MRS2-A, chloroplastic-like [Brachypodium distachyon]	Back alignment and taxonomy information

>gi\|326508468\|dbj\|BAJ95756.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		436
TAIR\|locus:2172641		459	MGT10 "magnesium (Mg) transpor	0.931	0.884	0.632	3.6e-128
UNIPROTKB\|Q7SFQ9		547	mrs2 "Mitochondrial inner memb	0.740	0.590	0.236	1.5e-17
UNIPROTKB\|Q4I298		498	MRS2 "Mitochondrial inner memb	0.685	0.600	0.243	7.8e-17
UNIPROTKB\|Q4WCV3		597	mrs2 "Mitochondrial inner memb	0.894	0.653	0.238	3.5e-16
UNIPROTKB\|Q6C8H7		455	LPE10 "Mitochondrial inner mem	0.692	0.663	0.235	5.2e-16
UNIPROTKB\|F1P344		379	MRS2 "Uncharacterized protein"	0.681	0.783	0.240	1.2e-14
ASPGD\|ASPL0000078212		594	AN11107 [Emericella nidulans (	0.635	0.466	0.242	1.5e-13
SGD\|S000005981		413	MFM1 "Mitochondrial inner memb	0.635	0.670	0.263	2.3e-13
UNIPROTKB\|Q6BX67		476	MRS2 "Mitochondrial inner memb	0.889	0.815	0.229	4.4e-13
POMBASE\|SPBC25H2.08c		422	mrs2 "magnesium ion transporte	0.639	0.661	0.245	7.2e-13

TAIR\|locus:2172641 MGT10 "magnesium (Mg) transporter 10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1258 (447.9 bits), Expect = 3.6e-128, P = 3.6e-128
 Identities = 270/427 (63%), Positives = 307/427 (71%)

Query:    18 SMSANYLL-FSSPSQPWPCSQKLRNASLFPIIVKVSSKVKCLTES--------------- 61
             S S +YLL  SSPS     S   R    F  + KV S+ KC  +S               
Sbjct:    24 SPSLHYLLPGSSPSFSLQLSALSRTPIYFEAL-KVLSRSKCFAKSPTTAEDFVGDYESLN 82

Query:    62 -TDEDRLSESEAVDDDVDGVREDTKVHVKRPQRTAXXXXXXXXXGIREPVYEVVEVKSNG 120
              +D+D  S+S + D D  G R+D+K   K    ++         GIREPVYEVVEVK+ G
Sbjct:    83 VSDDDDGSDSNSSDGDNGGGRDDSK---KIDSSSSSSSSDSTSLGIREPVYEVVEVKATG 139

Query:   121 VVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILLNLGSLRAITMQE 180
              +STRKINRRQLLKSSGLRPRDIRS+DPSLF+TNS+PSLLVREHAILLNLGSLRAI M++
Sbjct:   140 AISTRKINRRQLLKSSGLRPRDIRSVDPSLFMTNSVPSLLVREHAILLNLGSLRAIAMRD 199

Query:   181 RVFIFDYNRKGGQAFIDTXXXXXXXXXXXGSPCMPFMIEAVEAALLSRVQRLEQRLMHIE 240
             RV IFDYNR+GG+AF+DT           G P MPF +EAVE+AL+SR+QRLEQRLM IE
Sbjct:   200 RVLIFDYNRRGGRAFVDTLMPRLNPRSMNGGPSMPFELEAVESALISRIQRLEQRLMDIE 259

Query:   241 PRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMG 300
             PRVQ LLEVLPNRLTADILE+LRISKQ LVEL SRAGALRQMLLDLLEDPHEIRRICIMG
Sbjct:   260 PRVQALLEVLPNRLTADILEELRISKQRLVELGSRAGALRQMLLDLLEDPHEIRRICIMG 319

Query:   301 KNCTLRRGNDDVECSVPLEKQIAXXXXXXXXXXXXNYLQRCESCHGQSERLLDSAKEMED 360
             +NCTLRRG+DD+EC++P +K IA            NYLQRCESCHGQ+ERLLDSAKEMED
Sbjct:   320 RNCTLRRGDDDLECTLPSDKLIAEEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMED 379

Query:   361 SIAVNXXXXXXXXXXXXXXXQVGAFCVAVGALIAGIFGMNLKSYLEEHVFAFWLTTAGII 420
             SIAVN               QVG FCVAVGALIAGIFGMNL+SYLEE   AFWLTT GII
Sbjct:   380 SIAVNLSSRRLEVSRFELLLQVGTFCVAVGALIAGIFGMNLRSYLEEQASAFWLTTGGII 439

Query:   421 VGAVMAF 427
             +GA +AF
Sbjct:   440 IGAAVAF 446

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0030001 "metal ion transport" evidence=IEA

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IGI;IMP

GO:0015693 "magnesium ion transport" evidence=IGI

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

UNIPROTKB\|Q7SFQ9 mrs2 "Mitochondrial inner membrane magnesium transporter mrs2" [Neurospora crassa OR74A (taxid:367110)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4I298 MRS2 "Mitochondrial inner membrane magnesium transporter MRS2" [Gibberella zeae PH-1 (taxid:229533)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4WCV3 mrs2 "Mitochondrial inner membrane magnesium transporter mrs2" [Aspergillus fumigatus Af293 (taxid:330879)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6C8H7 LPE10 "Mitochondrial inner membrane magnesium transporter LPE10" [Yarrowia lipolytica CLIB122 (taxid:284591)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P344 MRS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000078212 AN11107 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

SGD\|S000005981 MFM1 "Mitochondrial inner membrane magnesium transporter" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6BX67 MRS2 "Mitochondrial inner membrane magnesium transporter MRS2" [Debaryomyces hansenii CBS767 (taxid:284592)]	Back alignment and assigned GO terms

POMBASE\|SPBC25H2.08c mrs2 "magnesium ion transporter Mrs2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B8APK3	MRS2A_ORYSI	No assigned EC number	0.7720	0.7958	0.7320	N/A	no
Q9AUK4	MRS2A_ORYSJ	No assigned EC number	0.7720	0.7958	0.7320	yes	no
Q058N4	MRS2B_ARATH	No assigned EC number	0.8492	0.7454	0.7080	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00022114001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (446 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		436
cd12823		323	cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae	3e-89
cd12821		285	cd12821, EcCorA_ZntB-like, Escherichia coli CorA-S	7e-06
pfam01544		291	pfam01544, CorA, CorA-like Mg2+ transporter protei	2e-05
cd12827		289	cd12827, EcCorA_ZntB-like_u2, uncharacterized bact	0.002

>gnl\|CDD\|213357 cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family	Back alignment and domain information

 Score =  273 bits (701), Expect = 3e-89
 Identities = 117/324 (36%), Positives = 182/324 (56%), Gaps = 20/324 (6%)

Query: 113 VVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILLNLGS 172
              + S G  +  ++++ +LL+  GL+PRD+R +DP+L  T+  PS+LVRE+AIL+NL  
Sbjct: 1   WTVIDSTGNATVVELDKSELLRELGLQPRDLRLLDPTL--TSYPPSILVRENAILVNLEH 58

Query: 173 LRAITMQERVFIFDYNRKGG---QAFIDTLLPRLNPRNLNGSPC-----MPFMIEAVEAA 224
           +RAI   + V +FD +        AF++ L  RL   N + S       +PF   A+EAA
Sbjct: 59  IRAIITADEVLLFDPDGSSSALVSAFLEELQRRLASSNGSESESGGEDSLPFEFRALEAA 118

Query: 225 LLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLL 284
           L      LE  L  +EP    LL+ L ++++   LE+L   K+ LVEL +R   +R  L 
Sbjct: 119 LEEVCSHLEAELKRLEPEALPLLDELTDKISTSNLERLLPLKRRLVELETRVQKVRDALE 178

Query: 285 DLLEDPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEMLLENYLQRCESC 344
           +LL+D  ++  + +  K     R           E    E++ EE+EMLLE YLQ+ +  
Sbjct: 179 ELLDDDEDMADMYLTDKAAGPERL----------ESSRKEDDHEEVEMLLEAYLQQVDEL 228

Query: 345 HGQSERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKSY 404
             + E L +   + E+ I + L SRR ++ R+EL L +G   +AVG L+AG+FGMNL S 
Sbjct: 229 LNKLEELREYIDDTEELINLILDSRRNQLMRLELKLSIGTLSLAVGTLVAGLFGMNLPSG 288

Query: 405 LEEHVFAFWLTTAGIIVGAVMAFL 428
           LEE  +AFW+ T G +VG+++ F+
Sbjct: 289 LEESPYAFWIVTGGSVVGSILIFI 312

A eukaryotic subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This functionally diverse subfamily includes the inner mitochondrial membrane Mg2+ transporters Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human MRS2/ MRS2L. It also includes a family of Arabidopsis thaliana proteins (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of two EcCorA_ZntB-like family transporters: Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, as in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 323

>gnl\|CDD\|213355 cd12821, EcCorA_ZntB-like, Escherichia coli CorA-Salmonella typhimurium ZntB_like family	Back alignment and domain information

>gnl\|CDD\|216560 pfam01544, CorA, CorA-like Mg2+ transporter protein	Back alignment and domain information

>gnl\|CDD\|213361 cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		436
KOG2662		414	consensus Magnesium transporters: CorA family [Ino	100.0
COG0598		322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	100.0
TIGR00383		318	corA magnesium Mg(2+) and cobalt Co(2+) transport	100.0
PRK09546		324	zntB zinc transporter; Reviewed	100.0
PF01544		292	CorA: CorA-like Mg2+ transporter protein; InterPro	99.97
PRK11085		316	magnesium/nickel/cobalt transporter CorA; Provisio	99.96
PRK11085		316	magnesium/nickel/cobalt transporter CorA; Provisio	96.73
PRK09546		324	zntB zinc transporter; Reviewed	95.27
COG0598		322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	95.03
TIGR00383		318	corA magnesium Mg(2+) and cobalt Co(2+) transport	92.94
PF01544		292	CorA: CorA-like Mg2+ transporter protein; InterPro	90.9
PF10267		395	Tmemb_cc2: Predicted transmembrane and coiled-coil	86.34

>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=2.3e-68  Score=531.98  Aligned_cols=323  Identities=32%  Similarity=0.465  Sum_probs=285.6

Q ss_pred             ccCceeEEEEEecCCceeEeeecHHHHHHhcCCCcchhhcccCCCCCCCCCceEEEecCeEEeecccceeeeecCeEEEE
Q 013820          106 IREPVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILLNLGSLRAITMQERVFIF  185 (436)
Q Consensus       106 ~~~~~~~wi~id~~G~~~~~~~~k~~L~~~~gL~~RDLR~id~~~~~t~~~PsIl~R~~~Ilvnle~IraII~~d~Vllf  185 (436)
                      ...+...|++||..|+++..+++|++|+++.||+|||||.+||++   .+.++|+.|+++|++|+|+|||||++++|++|
T Consensus        60 ~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~aRDLR~ldp~~---~~~ssIl~RE~aIVlNLe~IKAIItaeeVll~  136 (414)
T KOG2662|consen   60 SGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPARDLRKLDPSL---SYPSSILGRENAIVLNLEHIKAIITADEVLLL  136 (414)
T ss_pred             cCCcceEEEEEcCCCCeeeccccHHHHHHHcCCChhhhhhccccc---cCccccccccceEEeehhhhheeeehhheeEe
Confidence            344677999999999999999999999999999999999999986   25556999999999999999999999999999


Q ss_pred             ecCCCCccchHhhhhhhhCCCC--------CCC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCccc
Q 013820          186 DYNRKGGQAFIDTLLPRLNPRN--------LNG--SPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLT  255 (436)
Q Consensus       186 ~~~~~~~~~fl~~L~~RL~~~~--------~~~--~~~LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~~v~  255 (436)
                      +..++ +.++.+++++|+....        +.+  .+.+||||+|||++|..+|..|++++.++|..+.++||+|+.+++
T Consensus       137 d~~~~-v~~~~~el~~~l~~~~~~~~~q~s~~~~~~~~lPFEFrALE~aLe~~~s~L~~~~~~Le~~~~~~LdeLt~~is  215 (414)
T KOG2662|consen  137 DSLDP-VIPYNEELQRRLPVELESRGNQLSSDGGSKDELPFEFRALEVALEAACSFLDSRLSELETEAYPLLDELTNKIS  215 (414)
T ss_pred             ccccc-cchHHHHHHHHhcccccccccccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            98665 5688888888875432        222  379999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHhhcccccccc------------CCCCCCCcCcchhhhhh
Q 013820          256 ADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGKNCTLR------------RGNDDVECSVPLEKQIA  323 (436)
Q Consensus       256 ~~~L~~L~~LKr~L~~l~~~v~~vre~L~~LL~dd~dl~~m~Lt~~~~~~~------------~~~~~~~~~~~~~~~~~  323 (436)
                      +++|++++.+|++|+.|.++++.+||+|++||+||+||++||||+|+....            .+.....+..++..-..
T Consensus       216 ~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~~~~~~~~sp~~~~~~~r~~~~~~~s~~~~  295 (414)
T KOG2662|consen  216 TLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQASSPESAPTSPTIKAGISRAKSNRASSTVRG  295 (414)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhccccccCCCCccccCCccchhhcccchhccc
Confidence            999999999999999999999999999999999999999999999842111            11111111111221112


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHhHhccCCCC
Q 013820          324 EEEEEEIEMLLENYLQRCESCHGQSERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAVGALIAGIFGMNLKS  403 (436)
Q Consensus       324 ~~~~eevE~LLE~Y~r~vd~i~~~le~L~e~i~~ted~i~i~Ld~~rN~imkl~l~LTIiS~if~p~TfIAGiFGMNf~~  403 (436)
                      .+++||+|||||+||+|+|++.+++++++++|++|||+++++||++||++|+++++||++|++++++++|||+||||+++
T Consensus       296 ~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~InI~LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl~~  375 (414)
T KOG2662|consen  296 EDDVEELEMLLEAYFMQIDSTLNKLESLREYIDDTEDIINIQLDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNLPS  375 (414)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 013820          404 YLEEHVFAFWLTTAGIIVGAVMAFLPHVL  432 (436)
Q Consensus       404 ~~Ee~~~gF~~v~~~mv~~~v~~~~~~~~  432 (436)
                      ++|+.+|+||+|+++++++|+++|...+.
T Consensus       376 ~l~~~~~~F~~vv~~~~~~~~~lf~~i~~  404 (414)
T KOG2662|consen  376 SLEEDHYAFKWVVGITFTLCIVLFVVILG  404 (414)
T ss_pred             hhccCCChhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999887553

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)	Back alignment and domain information

>PRK09546 zntB zinc transporter; Reviewed	Back alignment and domain information

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]	Back alignment and domain information

>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional	Back alignment and domain information

>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional	Back alignment and domain information

>PRK09546 zntB zinc transporter; Reviewed	Back alignment and domain information

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)	Back alignment and domain information

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]	Back alignment and domain information

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		436
3rkg_A		261	Structural And Functional Characterization Of The Y		5e-05

>pdb|3RKG|A Chain A, Structural And Functional Characterization Of The Yeast Mg2+ Channel Mrs2 Length = 261

Back alignment and structure

Iteration: 1

Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 57/256 (22%), Positives = 104/256 (40%), Gaps = 28/256 (10%) Query: 113 VVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILLNLGS 172 V K N + + K + L L PRD+R ID S + +P+++ + + I++NL Sbjct: 21 VFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSI--DIIPTIMCKPNCIVINLLH 78 Query: 173 LRAITMQERVFIFDYNRKGGQAFIDTXXXXXXXXXXXGSPCMPFMIE-AVEAALLSRVQR 231 ++A+ +++V++FD A + F A+E+ ++ + Sbjct: 79 IKALIERDKVYVFDTTNPSAAAKLSVLMYDLESKLSSTKNNSQFYEHRALESIFINVMSA 138 Query: 232 LEQRL-MHIEPRVQGL--LEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLLDLLE 288 LE +H + +Q L LE NRL L L I + L + +R +L +LLE Sbjct: 139 LETDFKLHSQICIQILNDLENEVNRLK---LRHLLIKSKDLTLFYQKTLLIRDLLDELLE 195 Query: 289 DPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAXXXXXXXXXXXXNYLQRCESCHGQS 348 + ++ + + K +D LE I Y +C+ QS Sbjct: 196 NDDDLANMYLTVKKSPKDNFSD-------LEMLIET------------YYTQCDEYVQQS 236 Query: 349 ERLLDSAKEMEDSIAV 364 E L+ K E+ + + Sbjct: 237 ESLIQDIKSTEEIVNI 252

PyMOL of 3rkg

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		436
3rkg_A		261	Magnesium transporter MRS2, mitochondrial; matrix	1e-45
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07

>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae} Length = 261	Back alignment and structure

 Score =  158 bits (400), Expect = 1e-45
 Identities = 55/259 (21%), Positives = 110/259 (42%), Gaps = 22/259 (8%)

Query: 113 VVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILLNLGS 172
           V   K N +  + K  +   L    L PRD+R ID S    + +P+++ + + I++NL  
Sbjct: 21  VFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSI--DIIPTIMCKPNCIVINLLH 78

Query: 173 LRAITMQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNGSPC-MPFMIEAVEAALLSRVQR 231
           ++A+  +++V++FD       A +  L+  L  +  +       +   A+E+  ++ +  
Sbjct: 79  IKALIERDKVYVFDTTNPSAAAKLSVLMYDLESKLSSTKNNSQFYEHRALESIFINVMSA 138

Query: 232 LEQRLMHIEPRVQGLLEVLPNRLTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPH 291
           LE            +L  L N +    L  L I  + L     +   +R +L +LLE+  
Sbjct: 139 LETDFKLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDD 198

Query: 292 EIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEMLLENYLQRCESCHGQSERL 351
           ++  + +  K                      ++   ++EML+E Y  +C+    QSE L
Sbjct: 199 DLANMYLTVKKSP-------------------KDNFSDLEMLIETYYTQCDEYVQQSESL 239

Query: 352 LDSAKEMEDSIAVNLSSRR 370
           +   K  E+ + + L + R
Sbjct: 240 IQDIKSTEEIVNIILDANR 258

PyMOL of 3rkg

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		436
3rkg_A		261	Magnesium transporter MRS2, mitochondrial; matrix	100.0
2iub_A		363	CORA, divalent cation transport-related protein; m	100.0
4ev6_A		339	Magnesium transport protein CORA; membrane protein	100.0
4egw_A		280	Magnesium transport protein CORA; magnesium transp	99.81
3nvo_A		264	Zinc transport protein ZNTB; alpha-beta-alpha sand	99.7
3ck6_A		252	Putative membrane transport protein; APC91421.1, Z	99.66
2bbh_A		269	Divalent cation transport-related protein; transpo	99.57
2hn1_A		266	CORA, magnesium and cobalt transporter; integral m	99.53
2iub_A		363	CORA, divalent cation transport-related protein; m	95.82
4ev6_A		339	Magnesium transport protein CORA; membrane protein	94.52
1nfn_A		191	Apolipoprotein E3; lipid transport, heparin-bindin	84.17
4egw_A		280	Magnesium transport protein CORA; magnesium transp	82.32

>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=100.00  E-value=1.2e-49  Score=385.71  Aligned_cols=240  Identities=22%  Similarity=0.387  Sum_probs=220.3

Q ss_pred             eeEEEEEecCCceeEee--ecHHHHHHhcCCCcchhhcccCCCCCCCCCceEEEecCeEEeecccceeeeecCeEEEEec
Q 013820          110 VYEVVEVKSNGVVSTRK--INRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILLNLGSLRAITMQERVFIFDY  187 (436)
Q Consensus       110 ~~~wi~id~~G~~~~~~--~~k~~L~~~~gL~~RDLR~id~~~~~t~~~PsIl~R~~~Ilvnle~IraII~~d~Vllf~~  187 (436)
                      .+.|+.||..|++..+.  ++|++|++++||+|||||.|||++  .++.|+|++|++||+||+++|||||++|.|++|++
T Consensus        16 ~~~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~--~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~   93 (261)
T 3rkg_A           16 FISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSS--IDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDT   93 (261)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCC--SSCCCEEEECSSCEEEEETTEEEEECSSCEEEECC
T ss_pred             eEEEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccc--cCCCceEEecCCeEEEechhceEEEEcceEEEEcC
Confidence            68899999999999865  999999999999999999999974  46899999999999999999999999999999998


Q ss_pred             CCCCcc----chHhhhhhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCccchhHHHHHH
Q 013820          188 NRKGGQ----AFIDTLLPRLNPRNLNGSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPNRLTADILEQLR  263 (436)
Q Consensus       188 ~~~~~~----~fl~~L~~RL~~~~~~~~~~LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~~v~~~~L~~L~  263 (436)
                      .++...    .|+.++..|+++++   .+.+||||+|||+||.++|..|++++..++..+..++++|+++++++.|++|+
T Consensus        94 ~~~~~~~~~~~f~~~l~~~l~~~~---~~~lPFEfraLEa~L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~~~L~~Ll  170 (261)
T 3rkg_A           94 TNPSAAAKLSVLMYDLESKLSSTK---NNSQFYEHRALESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRHLL  170 (261)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCSS---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred             CCchhhhhHHHHHHHHHHHhccCC---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            764332    58889999997643   45799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHhhccccccccCCCCCCCcCcchhhhhhhhhHHHHHHHHHHHHHHHHH
Q 013820          264 ISKQTLVELSSRAGALRQMLLDLLEDPHEIRRICIMGKNCTLRRGNDDVECSVPLEKQIAEEEEEEIEMLLENYLQRCES  343 (436)
Q Consensus       264 ~LKr~L~~l~~~v~~vre~L~~LL~dd~dl~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~eevE~LLE~Y~r~vd~  343 (436)
                      ..|++|..+.++++.+|++|+++|++|+||+.||||+++.                   ..++|+|+|||||+||+|+|+
T Consensus       171 ~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~-------------------~~~d~eElEmLLE~Y~~q~d~  231 (261)
T 3rkg_A          171 IKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS-------------------PKDNFSDLEMLIETYYTQCDE  231 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCC-------------------TTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCC-------------------CccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999997641                   256789999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 013820          344 CHGQSERLLDSAKEMEDSIAVNLSSRRLEV  373 (436)
Q Consensus       344 i~~~le~L~e~i~~ted~i~i~Ld~~rN~i  373 (436)
                      +.+.+++++++|++|||+|++.||++||++
T Consensus       232 ~~~~~~~L~~~I~~TEe~i~i~LD~~RN~L  261 (261)
T 3rkg_A          232 YVQQSESLIQDIKSTEEIVNIILDANRNSL  261 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence            999999999999999999999999999985

PyMOL of 3rkg

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A	Back alignment and structure

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}	Back alignment and structure

>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}	Back alignment and structure

>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A	Back alignment and structure

>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*	Back alignment and structure

>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1	Back alignment and structure

>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}	Back alignment and structure

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A	Back alignment and structure

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}	Back alignment and structure

>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A	Back alignment and structure

>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		436
d2iuba2		64	f.17.3.1 (A:286-349) Magnesium transport protein C	5e-04

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]} Length = 64	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.2 bits (84), Expect = 5e-04
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 379 LLQVGAFCVAVGALIAGIFGMNLKSYLE-EHVFAFWLTTAGIIVGAVMAFL 428
           +L + A        IAGI+GMN +   E    + + +  A + V AV+  +
Sbjct: 8   VLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVV 58

PyMOL of d2iuba2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		436
d2bbha1		232	Magnesium transport protein CorA, soluble domain {	99.67
d2iuba2		64	Magnesium transport protein CorA {Thermotoga marit	99.63
d1lrza1		65	Methicillin resistance protein FemA probable tRNA-	83.21

>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: CorA soluble domain-like
superfamily: CorA soluble domain-like
family: CorA soluble domain-like
domain: Magnesium transport protein CorA, soluble domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=2e-16  Score=147.79  Aligned_cols=174  Identities=15%  Similarity=0.118  Sum_probs=136.7

Q ss_pred             cCceeEEEEEecCCceeEeeecHHHHHHhcCCCcchhhcccCCCCCCCCCceEEEecCeEEe--------------eccc
Q 013820          107 REPVYEVVEVKSNGVVSTRKINRRQLLKSSGLRPRDIRSIDPSLFLTNSMPSLLVREHAILL--------------NLGS  172 (436)
Q Consensus       107 ~~~~~~wi~id~~G~~~~~~~~k~~L~~~~gL~~RDLR~id~~~~~t~~~PsIl~R~~~Ilv--------------nle~  172 (436)
                      ....+.|++++|.++...++    .|++.|||||..++++..    ..++|++...++.+++              ...+
T Consensus        43 ~~~~~~Widi~~~~~~e~l~----~l~~~f~i~~l~led~l~----~~~rpk~e~~~~~~fiil~~~~~~~~~~~~~~~~  114 (232)
T d2bbha1          43 DSSTPTWINITGIHRTDVVQ----RVGEFFGTHPLVLEDILN----VHQRPKVEFFENYVFIVLKMFTYDKNLHELESEQ  114 (232)
T ss_dssp             GCSSCEEEEEECTTCHHHHH----HHHHHHTCCHHHHHHHHC----TTCCCEEEECSSEEEEEEEEEECCC--CCCEEEE
T ss_pred             CCCCcEEEEeCCCCCHHHHH----HHHHHcCcCHhHHHHHhC----cccCCceEEeCCEEEEEEEeecccCCCCcceeEE
Confidence            34668999999999877777    899999999999999998    5799999988887442              3457


Q ss_pred             ceeeeecCeEEEEecCCCCccchHhhhhhhhCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccC
Q 013820          173 LRAITMQERVFIFDYNRKGGQAFIDTLLPRLNPRNLNGSPCMPFMIEAVEAALLSRVQRLEQRLMHIEPRVQGLLEVLPN  252 (436)
Q Consensus       173 IraII~~d~Vllf~~~~~~~~~fl~~L~~RL~~~~~~~~~~LpfE~~aLEaiLd~v~~~Le~~l~~Le~~v~~~ld~L~~  252 (436)
                      +.++++++++++|+..+   .++++.+++|++...+.....-|.  .++.++++.+++.|...++.++++++.+++.+.+
T Consensus       115 l~i~l~~~~lITv~~~~---~~~~~~v~~~~~~~~~~~~~~~~~--~ll~~lld~ivd~y~~~l~~l~~~id~lE~~v~~  189 (232)
T d2bbha1         115 VSLILTKNCVLMFQEKI---GDVFDPVRERIRYNRGIIRKKRAD--YLLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLE  189 (232)
T ss_dssp             EEEEEETTEEEEEESSS---CCSCHHHHHHHHTTCTTGGGSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             EEEEEECCEEEEEecCC---CchHHHHHHHHHhCccccccCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            89999999999999765   377889999987544321111111  2556777777788888888899999999999888


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Q 013820          253 RLTADILEQLRISKQTLVELSSRAGALRQMLLDLLEDPHEI  293 (436)
Q Consensus       253 ~v~~~~L~~L~~LKr~L~~l~~~v~~vre~L~~LL~dd~dl  293 (436)
                      +.+.+.+.+|+.+|+++..+|+.++|.|+++.+|.+++.++
T Consensus       190 ~~~~~~l~~i~~lrr~l~~lrr~l~p~revl~~L~r~~~~l  230 (232)
T d2bbha1         190 RPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPL  230 (232)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            88888899999999999999999999999999999987765

PyMOL of d2bbha1

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure